Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 84 of 161
Found at i:26593002 original size:32 final size:32
Alignment explanation
Indices: 26592961--26593030 Score: 131
Period size: 32 Copynumber: 2.2 Consensus size: 32
26592951 GGCCAACAAA
26592961 GAACATGCATGGTTATTACTATACAGGAAAAT
1 GAACATGCATGGTTATTACTATACAGGAAAAT
*
26592993 GAACATGCATGGTTATTACTATACAGGATAAT
1 GAACATGCATGGTTATTACTATACAGGAAAAT
26593025 GAACAT
1 GAACAT
26593031 AAAAGCTCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.29
Consensus pattern (32 bp):
GAACATGCATGGTTATTACTATACAGGAAAAT
Found at i:26596498 original size:75 final size:74
Alignment explanation
Indices: 26596395--26596605 Score: 323
Period size: 75 Copynumber: 2.8 Consensus size: 74
26596385 AATTTCACGT
* * * * *
26596395 TCCCTCTCTTGATCGCGTTCACTTTCGTGTCTCCTCAACCTACTACTGCTTCTCTCTCTCCTATC
1 TCCCTCTCTAG-TCACGATCACTTTCGTGCCTCCTCGACCTACTACTGCTTCTCTCTCTCCTATC
26596460 TCTCTCCCGC
65 TCTCTCCCGC
* *
26596470 TCCCTCTCTAGCTCACGATCACTCTCGTGCCTCCTCGACCTACTACTGCTCCTCTCTCTCCTATC
1 TCCCTCTCTAG-TCACGATCACTTTCGTGCCTCCTCGACCTACTACTGCTTCTCTCTCTCCTATC
*
26596535 TCTCTCCCGT
65 TCTCTCCCGC
26596545 TCCCTCTCTATGTCACGATCACTTTCGTGCCTCCTCGACCTACTACTGCTTCTCTCTCTCC
1 TCCCTCTCTA-GTCACGATCACTTTCGTGCCTCCTCGACCTACTACTGCTTCTCTCTCTCC
26596606 GGTCCATCAT
Statistics
Matches: 124, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
75 123 0.99
76 1 0.01
ACGTcount: A:0.10, C:0.44, G:0.09, T:0.36
Consensus pattern (74 bp):
TCCCTCTCTAGTCACGATCACTTTCGTGCCTCCTCGACCTACTACTGCTTCTCTCTCTCCTATCT
CTCTCCCGC
Found at i:26599109 original size:25 final size:25
Alignment explanation
Indices: 26599064--26599111 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
26599054 AAATTATTAA
*
26599064 AATATTAATAAAATATTATATTTTT
1 AATATTAATAAAATATCATATTTTT
*
26599089 AATATTATTAAACATA-CATATTT
1 AATATTAATAAA-ATATCATATTT
26599112 AATTATTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 17 0.85
26 3 0.15
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (25 bp):
AATATTAATAAAATATCATATTTTT
Found at i:26599193 original size:13 final size:14
Alignment explanation
Indices: 26599177--26599218 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
26599167 TTTCAATTTT
26599177 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
26599190 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
26599205 ATTTTAAATAATAT
1 ATTTT-AATAATAT
26599219 TATTCAATCT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:26599203 original size:16 final size:16
Alignment explanation
Indices: 26599181--26599217 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
26599171 AATTTTATTT
26599181 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
26599198 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
26599213 TAATA
1 TAATA
26599218 TTATTCAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:26600236 original size:16 final size:17
Alignment explanation
Indices: 26600215--26600247 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
26600205 CACTCAAATG
26600215 TTCAACATTT-ATTTTT
1 TTCAACATTTAATTTTT
26600231 TTCAACATTTAATTTTT
1 TTCAACATTTAATTTTT
26600248 CAATTTATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.27, C:0.12, G:0.00, T:0.61
Consensus pattern (17 bp):
TTCAACATTTAATTTTT
Found at i:26600946 original size:23 final size:24
Alignment explanation
Indices: 26600902--26600956 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 24
26600892 ACAATTTATA
26600902 AATA-TTTAATAATAAATAAAATATT
1 AATATTTTAATAAT-AATAAAATA-T
26600927 AATATTTTAATAAT-AT-AAATAT
1 AATATTTTAATAATAATAAAATAT
26600949 AAGTATTT
1 AA-TATTT
26600957 GTTTAAATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
22 3 0.11
23 10 0.36
24 2 0.07
25 4 0.14
26 9 0.32
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (24 bp):
AATATTTTAATAATAATAAAATAT
Found at i:26601270 original size:29 final size:30
Alignment explanation
Indices: 26601238--26601299 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
26601228 AATGTGCATA
* * *
26601238 TTTATACATAAACTTTT-ATTTTATGCAAT
1 TTTATACATAAAATTTTGATTTGATCCAAT
26601267 TTTATACATAAAATTTTGATTTGATCCAAT
1 TTTATACATAAAATTTTGATTTGATCCAAT
26601297 TTT
1 TTT
26601300 CACAAATTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 16 0.55
30 13 0.45
ACGTcount: A:0.34, C:0.10, G:0.05, T:0.52
Consensus pattern (30 bp):
TTTATACATAAAATTTTGATTTGATCCAAT
Found at i:26601892 original size:25 final size:25
Alignment explanation
Indices: 26601864--26601912 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
26601854 GGTTAAATAA
*
26601864 GTTAAATATGTCGTTTTTTTAATTG
1 GTTAAATAGGTCGTTTTTTTAATTG
**
26601889 GTTAAATAGGTTTTTTTTTTAATT
1 GTTAAATAGGTCGTTTTTTTAATT
26601913 TAAGGAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.24, C:0.02, G:0.14, T:0.59
Consensus pattern (25 bp):
GTTAAATAGGTCGTTTTTTTAATTG
Found at i:26602486 original size:85 final size:85
Alignment explanation
Indices: 26602338--26602512 Score: 287
Period size: 85 Copynumber: 2.1 Consensus size: 85
26602328 TTATTTTAAT
* * *
26602338 GCATACTACGTCGTTGATGGTGCGTATTCTAATAGCCAAATACTTTCCTAATACAAGGTTTCTTA
1 GCATCCTACGTCGTTCATGGTGCGTATTCTAAGAGCCAAATACTTTCCTAATACAAGGTTTCTTA
* *
26602403 GTGCTTAGTTAGGTTTCAAA
66 GTGCTCAGTTAGGTTCCAAA
*
26602423 GCATCCTACGTCGTTCATGGTGCGTATTCTAAGGGCCAAATACTTTCCTAATACAAGGTTTCTTA
1 GCATCCTACGTCGTTCATGGTGCGTATTCTAAGAGCCAAATACTTTCCTAATACAAGGTTTCTTA
26602488 GTGCTCAGTTAGGTTCCAAA
66 GTGCTCAGTTAGGTTCCAAA
*
26602508 CCATC
1 GCATC
26602513 ACTCGTTTGG
Statistics
Matches: 83, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 83 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (85 bp):
GCATCCTACGTCGTTCATGGTGCGTATTCTAAGAGCCAAATACTTTCCTAATACAAGGTTTCTTA
GTGCTCAGTTAGGTTCCAAA
Found at i:26609158 original size:14 final size:14
Alignment explanation
Indices: 26609139--26609178 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
26609129 TTGATTGGCA
26609139 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
26609153 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
26609167 GGAAAATGTTTT
1 GTAAAATGTTTT
26609179 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:26609187 original size:20 final size:20
Alignment explanation
Indices: 26609162--26609201 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
26609152 CGTAAAATGA
*
26609162 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
26609182 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
26609202 GGAAACTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:26609325 original size:20 final size:20
Alignment explanation
Indices: 26609300--26609338 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
26609290 GTTTTTACAT
26609300 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
*
26609320 ATATTAATAAATTTTTATA
1 ATATTAATAAATTTATATA
26609339 TTTTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:26611940 original size:14 final size:14
Alignment explanation
Indices: 26611917--26611984 Score: 58
Period size: 14 Copynumber: 5.2 Consensus size: 14
26611907 AGAATATGCT
* *
26611917 AAGAAGAGAAGATG
1 AAGAACAGAAGAAG
26611931 AAGAACAGAAGAAG
1 AAGAACAGAAGAAG
26611945 AA-AA-AG--GAATG
1 AAGAACAGAAGAA-G
*
26611956 AAGAACGGAAGAAG
1 AAGAACAGAAGAAG
26611970 AAG-A-AGAAGAAG
1 AAGAACAGAAGAAG
26611982 AAG
1 AAG
26611985 GAGCCTTACC
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
10 3 0.07
11 3 0.07
12 14 0.31
13 4 0.09
14 18 0.40
15 3 0.07
ACGTcount: A:0.62, C:0.03, G:0.32, T:0.03
Consensus pattern (14 bp):
AAGAACAGAAGAAG
Found at i:26611945 original size:3 final size:3
Alignment explanation
Indices: 26611917--26611984 Score: 59
Period size: 3 Copynumber: 22.0 Consensus size: 3
26611907 AGAATATGCT
* * *
26611917 AAG AAG -AG AAG ATG AAG AA- CAG AAG AAG AAA AAGG AATG AAG AACGG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA-G AA-G AAG AA--G
26611964 AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG
26611985 GAGCCTTACC
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
2 3 0.06
3 42 0.79
4 5 0.09
5 3 0.06
ACGTcount: A:0.62, C:0.03, G:0.32, T:0.03
Consensus pattern (3 bp):
AAG
Found at i:26611945 original size:25 final size:25
Alignment explanation
Indices: 26611917--26611984 Score: 77
Period size: 25 Copynumber: 2.7 Consensus size: 25
26611907 AGAATATGCT
26611917 AAGAAGAGAAGATGAAGAACAGAAG
1 AAGAAGAGAAGATGAAGAACAGAAG
*
26611942 AAGAA-A-AAGGAATGAAGAACGGAAG
1 AAGAAGAGAA-G-ATGAAGAACAGAAG
*
26611967 AAGAAGAAGAAGAAGAAG
1 AAGAAG-AGAAGATGAAG
26611985 GAGCCTTACC
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
23 2 0.06
24 2 0.06
25 23 0.64
26 5 0.14
27 2 0.06
28 2 0.06
ACGTcount: A:0.62, C:0.03, G:0.32, T:0.03
Consensus pattern (25 bp):
AAGAAGAGAAGATGAAGAACAGAAG
Found at i:26612067 original size:6 final size:6
Alignment explanation
Indices: 26612046--26612087 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
26612036 TTTGCAACCC
*
26612046 AAGGGG AAGGGAA AAGGGA AAGGG- AAGGGA AAGGGGA AAGGG
1 AAGGGA AAGGG-A AAGGGA AAGGGA AAGGGA AA-GGGA AAGGG
26612088 GAGAAGAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
5 5 0.16
6 16 0.50
7 11 0.34
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (6 bp):
AAGGGA
Found at i:26612072 original size:18 final size:18
Alignment explanation
Indices: 26612049--26612087 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
26612039 GCAACCCAAG
26612049 GGGAAGGGAAAAGGGAAA
1 GGGAAGGGAAAAGGGAAA
*
26612067 GGGAAGGGAAAGGGGAAA
1 GGGAAGGGAAAAGGGAAA
26612085 GGG
1 GGG
26612088 GAGAAGAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (18 bp):
GGGAAGGGAAAAGGGAAA
Found at i:26614270 original size:29 final size:32
Alignment explanation
Indices: 26614238--26614297 Score: 81
Period size: 29 Copynumber: 2.0 Consensus size: 32
26614228 TTTTTGCTTC
26614238 TTTCTTCAATCTAG-CCC-AATTGT-TTCCTT
1 TTTCTTCAATCTAGCCCCAAATTGTATTCCTT
* *
26614267 TTTCTTCTATTTAGCCCCAAATTGTATTCCT
1 TTTCTTCAATCTAGCCCCAAATTGTATTCCT
26614298 GCACAAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 12 0.46
30 3 0.12
31 6 0.23
32 5 0.19
ACGTcount: A:0.18, C:0.27, G:0.07, T:0.48
Consensus pattern (32 bp):
TTTCTTCAATCTAGCCCCAAATTGTATTCCTT
Found at i:26616360 original size:34 final size:36
Alignment explanation
Indices: 26616303--26616369 Score: 86
Period size: 34 Copynumber: 1.9 Consensus size: 36
26616293 TAATAATATT
*
26616303 ATTATATTAAAATAATTATTAAA-TAT-TATTAATA
1 ATTATATTAAAATAATTACTAAATTATATATTAATA
*
26616337 ATTATATTAAGAAT-GTTACTAAATTATATATTA
1 ATTATATTAA-AATAATTACTAAATTATATATTA
26616370 TTTTATTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
34 17 0.61
35 6 0.21
36 5 0.18
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.46
Consensus pattern (36 bp):
ATTATATTAAAATAATTACTAAATTATATATTAATA
Found at i:26616421 original size:25 final size:26
Alignment explanation
Indices: 26616372--26616422 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26616362 ATATATTATT
* *
26616372 TTATTAAATTTTATTTAACAATAATC
1 TTATTAAAATTTATATAACAATAATC
26616398 TTATTAAAATTTA-ATAACAATAATC
1 TTATTAAAATTTATATAACAATAATC
26616423 AACTACCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (26 bp):
TTATTAAAATTTATATAACAATAATC
Found at i:26616666 original size:16 final size:15
Alignment explanation
Indices: 26616642--26616698 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 15
26616632 GGTTGGGGGG
26616642 AATGAAATAGAGCTGT
1 AATG-AATAGAGCTGT
*
26616658 AATGTAATAGAGCTATT
1 AATG-AATAGAGCT-GT
*
26616675 AATAGAATAGAGTTGT
1 AAT-GAATAGAGCTGT
*
26616691 AATCAATA
1 AATGAATA
26616699 ATTCAGTTGT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
15 4 0.12
16 17 0.50
17 12 0.35
18 1 0.03
ACGTcount: A:0.46, C:0.05, G:0.19, T:0.30
Consensus pattern (15 bp):
AATGAATAGAGCTGT
Found at i:26616892 original size:62 final size:57
Alignment explanation
Indices: 26616825--26616989 Score: 167
Period size: 57 Copynumber: 2.8 Consensus size: 57
26616815 TTTTAATAAG
* *
26616825 ATTATTATTAAATATAATTTAATAATAAATAATAATAAATAATTTAATCATATT-TTAACAT
1 ATTATTATTAAATATAA-TTAATAA-AAATAATAAT-AATAATTTAATAACATTCTT-A-AT
*
26616886 ATTTATTATTAAATACAAGTTAAT-AAAATAAT-AT-ATAATTTAATAACATTCTTAAT
1 A-TTATTATTAAATATAA-TTAATAAAAATAATAATAATAATTTAATAACATTCTTAAT
*
26616942 ATTATTATTAAAATATGAATTAATAAAAATCATAATATATAATATTAA
1 ATTATTATT-AAATAT-AATTAATAAAAATAATAATA-ATAAT-TTAA
26616990 AAAAATAATA
Statistics
Matches: 89, Mismatches: 6, Indels: 18
0.79 0.05 0.16
Matches are distributed among these distances:
55 8 0.09
56 13 0.15
57 24 0.27
58 4 0.04
59 2 0.02
60 12 0.13
61 6 0.07
62 20 0.22
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (57 bp):
ATTATTATTAAATATAATTAATAAAAATAATAATAATAATTTAATAACATTCTTAAT
Found at i:26626318 original size:309 final size:309
Alignment explanation
Indices: 26625747--26626340 Score: 974
Period size: 309 Copynumber: 1.9 Consensus size: 309
26625737 TCCACGTGGG
*
26625747 GATATAATTAACCCACACATCCCTACACTCAAAGTAGTACCGAATGGGGCACTAGACAGTAGTTT
1 GATATAATTAACCCACACATCCCTACACTCAAAGTAGTACCGAATGCGGCACTAGACAGTAGTTT
* * * *
26625812 GCAGCTGAGCTGCCAGTAAATTAAGCTCGAGGCCTTTCAGTACACTTCCTCCAAACATTATAATC
66 GCAGCTAAGCTGCCAGTAAATTAAGCTCAAGGCCTTCCAGTACACCTCCTCCAAACATTATAATC
* * * *
26625877 GCCCAACCCAATGGAATGCAATATACATATATGACATGCTATAACATAATATCATGCATGTAAAT
131 CCCCAACCCAATGCAATGCAATATACAGATATGACATGCTATAACATAATATCATGCATGTAAAC
*
26625942 AAGGCATACAGTATCAAATCAGTGGGACATCATCGGGCTTAATCATATCAGTCATACAGTCGTTT
196 AAGGCATACAGTATCAAATCAGTGGGACATCATCAGGCTTAATCATATCAGTCATACAGTCGTTT
26626007 CAGTCAATTAGGGGTCTAGGTAAGCTTACTGAACCTATAGATATGACAT
261 CAGTCAATTAGGGGTCTAGGTAAGCTTACTGAACCTATAGATATGACAT
* * * *
26626056 GATATAATTAACGCACCCATCCCTACACTCCAAGTAGTACCGAATGCGGCATTAGACAGTAGTTT
1 GATATAATTAACCCACACATCCCTACACTCAAAGTAGTACCGAATGCGGCACTAGACAGTAGTTT
* *
26626121 GCAGCTAAGCTGCCAGTAAATTAAGCTCAATGCCTTCCAGTACACCTCCTTCAAACATTATAATC
66 GCAGCTAAGCTGCCAGTAAATTAAGCTCAAGGCCTTCCAGTACACCTCCTCCAAACATTATAATC
**
26626186 CCCCAATGCAATGCAATGCAATATACAGATATGACATGCTATAACATAATATCATGCATGTAAAC
131 CCCCAACCCAATGCAATGCAATATACAGATATGACATGCTATAACATAATATCATGCATGTAAAC
* * * *
26626251 AAGGCATACAGTATCAAATTAGTGGGACATCATCAGGCTTAATCGTATCAG-CTATATAGTTGTT
196 AAGGCATACAGTATCAAATCAGTGGGACATCATCAGGCTTAATCATATCAGTC-ATACAGTCGTT
26626315 TCAGTCAATTAGGGGTCTAGGTAAGC
260 TCAGTCAATTAGGGGTCTAGGTAAGC
26626341 ATACCGACCC
Statistics
Matches: 262, Mismatches: 22, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
308 1 0.00
309 261 1.00
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.26
Consensus pattern (309 bp):
GATATAATTAACCCACACATCCCTACACTCAAAGTAGTACCGAATGCGGCACTAGACAGTAGTTT
GCAGCTAAGCTGCCAGTAAATTAAGCTCAAGGCCTTCCAGTACACCTCCTCCAAACATTATAATC
CCCCAACCCAATGCAATGCAATATACAGATATGACATGCTATAACATAATATCATGCATGTAAAC
AAGGCATACAGTATCAAATCAGTGGGACATCATCAGGCTTAATCATATCAGTCATACAGTCGTTT
CAGTCAATTAGGGGTCTAGGTAAGCTTACTGAACCTATAGATATGACAT
Found at i:26628791 original size:11 final size:11
Alignment explanation
Indices: 26628775--26628817 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
26628765 AGATAAATGT
26628775 TATTTTATTAA
1 TATTTTATTAA
26628786 TATTTTATTAA
1 TATTTTATTAA
* * *
26628797 GATTTTTAGTAT
1 TA-TTTTATTAA
26628809 TATTTTATT
1 TATTTTATT
26628818 GTTAAATGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
11 18 0.69
12 8 0.31
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:26630331 original size:29 final size:29
Alignment explanation
Indices: 26630298--26630355 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
26630288 TGGATATTAC
* *
26630298 AGAAATATGTGTTAGTATTGAATTGAATG
1 AGAAATATATGTTAATATTGAATTGAATG
26630327 AGAAATATATGTTAATATTGAATTGAATG
1 AGAAATATATGTTAATATTGAATTGAATG
26630356 TTGATTAGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (29 bp):
AGAAATATATGTTAATATTGAATTGAATG
Found at i:26630547 original size:21 final size:21
Alignment explanation
Indices: 26630519--26630578 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
26630509 GCTTTTCCGA
26630519 TCAGGCACTATATGTGTCATAT
1 TCAGGCACTATATGTGTCAT-T
* ** *
26630541 T-AGGCACCACGTGTGTCGTT
1 TCAGGCACTATATGTGTCATT
*
26630561 TCAGGCACTTTATGTGTC
1 TCAGGCACTATATGTGTC
26630579 GTATACTGCT
Statistics
Matches: 29, Mismatches: 8, Indels: 3
0.73 0.20 0.08
Matches are distributed among these distances:
20 2 0.07
21 26 0.90
22 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (21 bp):
TCAGGCACTATATGTGTCATT
Found at i:26630578 original size:42 final size:42
Alignment explanation
Indices: 26630519--26630665 Score: 138
Period size: 42 Copynumber: 3.5 Consensus size: 42
26630509 GCTTTTCCGA
* *
26630519 TCAGGCACTATATGTGTCATATTAGGCACCACGTGTGTCGTT
1 TCAGGCACTTTATGTGTCGTATTAGGCACCACGTGTGTCGTT
* ** * * * * *
26630561 TCAGGCACTTTATGTGTCGTA-TACTGC-TTATGATATATTG-A
1 TCAGGCACTTTATGTGTCGTATTA-GGCACCACG-TGTGTCGTT
* *
26630602 TCCGGCACTGTATGTGTCGTATTAGGCACCACGTGTGTCGTT
1 TCAGGCACTTTATGTGTCGTATTAGGCACCACGTGTGTCGTT
*
26630644 TCAGGCACTTTATGTGTTGTAT
1 TCAGGCACTTTATGTGTCGTAT
26630666 ACTGCTTCTG
Statistics
Matches: 77, Mismatches: 23, Indels: 10
0.70 0.21 0.09
Matches are distributed among these distances:
41 29 0.38
42 48 0.62
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (42 bp):
TCAGGCACTTTATGTGTCGTATTAGGCACCACGTGTGTCGTT
Found at i:26630629 original size:21 final size:22
Alignment explanation
Indices: 26630605--26630665 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 22
26630595 ATATTGATCC
*
26630605 GGCACTGTATGTGTCGTATT-A
1 GGCACTATATGTGTCGTATTCA
* **
26630626 GGCACCACGTGTGTCGT-TTCA
1 GGCACTATATGTGTCGTATTCA
* *
26630647 GGCACTTTATGTGTTGTAT
1 GGCACTATATGTGTCGTAT
26630666 ACTGCTTCTG
Statistics
Matches: 29, Mismatches: 9, Indels: 3
0.71 0.22 0.07
Matches are distributed among these distances:
20 2 0.07
21 26 0.90
22 1 0.03
ACGTcount: A:0.16, C:0.18, G:0.28, T:0.38
Consensus pattern (22 bp):
GGCACTATATGTGTCGTATTCA
Found at i:26630666 original size:83 final size:83
Alignment explanation
Indices: 26630517--26630689 Score: 292
Period size: 83 Copynumber: 2.1 Consensus size: 83
26630507 CGGCTTTTCC
26630517 GATCAGGCACTATATGTGTCATATTAGGCACCACGTGTGTCGTTTCAGGCACTTTATGTGTCGTA
1 GATCAGGCACTATATGTGTCATATTAGGCACCACGTGTGTCGTTTCAGGCACTTTATGTGTCGTA
26630582 TACTGCTTATGATATATT
66 TACTGCTTATGATATATT
* * * *
26630600 GATCCGGCACTGTATGTGTCGTATTAGGCACCACGTGTGTCGTTTCAGGCACTTTATGTGTTGTA
1 GATCAGGCACTATATGTGTCATATTAGGCACCACGTGTGTCGTTTCAGGCACTTTATGTGTCGTA
* *
26630665 TACTGCTTCTGATATGTT
66 TACTGCTTATGATATATT
26630683 GATCAGG
1 GATCAGG
26630690 TATTGAGTAC
Statistics
Matches: 83, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
83 83 1.00
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.37
Consensus pattern (83 bp):
GATCAGGCACTATATGTGTCATATTAGGCACCACGTGTGTCGTTTCAGGCACTTTATGTGTCGTA
TACTGCTTATGATATATT
Found at i:26636357 original size:130 final size:131
Alignment explanation
Indices: 26636055--26636342 Score: 332
Period size: 132 Copynumber: 2.2 Consensus size: 131
26636045 TTGCCAATAG
* * *
26636055 CTAAGAACAGTAAAATCAACAAAAGGAGCAATCAATAAGAATCAAATAGTAAAAGAAAAATGTAA
1 CTAAGAACAGCAAAATCAACAAAAGAAGCAAACAATAAGAATCAAATAGTAAAAGAAAAATGTAA
* * * *
26636120 AAATAGACAAACCCATTTAAATTTTAACTAAAAGAACACAAAAGCAAAGACTATAATTTGCAAAG
66 AAACAAACAAACCCATTTAAATTTGAACTAAAAGAACACAAAAGCAAAGACCATAATTT-CAAAG
*
26636185 AG
130 AA
** * * *
26636187 CTAAGAACAGCAAAATCAACAAAAGGGGCAATCAATAAGAATCAAATAGTACAA-AAGAA-GTAA
1 CTAAGAACAGCAAAATCAACAAAAGAAGCAAACAATAAGAATCAAATAGTAAAAGAAAAATGTAA
* * * * * *
26636250 AAACAAACAAACCCATTTTAA-TTGAACTGAAATAACACAAAAGCGAAGACCATAGTTT-AAGGA
66 AAACAAACAAACCCATTTAAATTTGAACTAAAAGAACACAAAAGCAAAGACCATAATTTCAAAGA
26636313 A
131 A
* *
26636314 CTAAGAATAGCTAAATCAATCAATAAGAA
1 CTAAGAACAGCAAAATCAA-CAA-AAGAA
26636343 TTAAACAGTA
Statistics
Matches: 135, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
127 21 0.16
128 3 0.02
129 34 0.25
130 22 0.16
131 4 0.03
132 51 0.38
ACGTcount: A:0.56, C:0.14, G:0.13, T:0.17
Consensus pattern (131 bp):
CTAAGAACAGCAAAATCAACAAAAGAAGCAAACAATAAGAATCAAATAGTAAAAGAAAAATGTAA
AAACAAACAAACCCATTTAAATTTGAACTAAAAGAACACAAAAGCAAAGACCATAATTTCAAAGA
A
Found at i:26638043 original size:17 final size:17
Alignment explanation
Indices: 26638031--26638068 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
26638021 TATTCACATA
26638031 TTAAA-TTTTTTCAAAT
1 TTAAACTTTTTTCAAAT
*
26638047 TTAAACTTTTTTACAATT
1 TTAAACTTTTTT-CAAAT
26638065 TTAA
1 TTAA
26638069 TTTAGTCCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 5 0.26
17 6 0.32
18 8 0.42
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (17 bp):
TTAAACTTTTTTCAAAT
Found at i:26642083 original size:18 final size:19
Alignment explanation
Indices: 26642062--26642106 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
26642052 TTTATCTATT
26642062 TTTTTTCTTGTT-TTTT-TG
1 TTTTTTCTT-TTCTTTTCTG
26642080 TTTTTTCTTTTCTTTTCTG
1 TTTTTTCTTTTCTTTTCTG
*
26642099 TATTTTCT
1 TTTTTTCT
26642107 ATATTTGGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 2 0.08
18 13 0.54
19 9 0.38
ACGTcount: A:0.02, C:0.11, G:0.07, T:0.80
Consensus pattern (19 bp):
TTTTTTCTTTTCTTTTCTG
Found at i:26642095 original size:19 final size:18
Alignment explanation
Indices: 26642062--26642106 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
26642052 TTTATCTATT
*
26642062 TTTTTTCTTGTTTTTTTG
1 TTTTTTCTTGTTTTTCTG
*
26642080 TTTTTTCTTTTCTTTTCTG
1 TTTTTTCTTGT-TTTTCTG
*
26642099 TATTTTCT
1 TTTTTTCT
26642107 ATATTTGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 10 0.43
19 13 0.57
ACGTcount: A:0.02, C:0.11, G:0.07, T:0.80
Consensus pattern (18 bp):
TTTTTTCTTGTTTTTCTG
Found at i:26642104 original size:29 final size:29
Alignment explanation
Indices: 26642043--26642104 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
26642033 ATATATAACC
* *
26642043 TTTTATTGTTTTATCTATTTTTTTTCTTG
1 TTTTATTGTTTTATCTATTTCTTTTCTTA
* *
26642072 TTTTTTTGTTTTTTCT-TTTCTTTTCTGTA
1 TTTTATTGTTTTATCTATTTCTTTTCT-TA
26642101 TTTT
1 TTTT
26642105 CTATATTTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 9 0.32
29 19 0.68
ACGTcount: A:0.06, C:0.08, G:0.06, T:0.79
Consensus pattern (29 bp):
TTTTATTGTTTTATCTATTTCTTTTCTTA
Found at i:26643546 original size:11 final size:11
Alignment explanation
Indices: 26643530--26643560 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
26643520 ACCATTGAAA
26643530 GAATTTTATAT
1 GAATTTTATAT
26643541 GAATTTTATAT
1 GAATTTTATAT
26643552 GAATTTTAT
1 GAATTTTAT
26643561 GGGTATTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (11 bp):
GAATTTTATAT
Found at i:26645452 original size:20 final size:21
Alignment explanation
Indices: 26645416--26645454 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
26645406 ATATATGTTT
26645416 TTTTGTTGTTTATATGTTAAA
1 TTTTGTTGTTTATATGTTAAA
26645437 TTTTG-TGTTGTA-ATGTTA
1 TTTTGTTGTT-TATATGTTA
26645455 TATCTAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.21, C:0.00, G:0.18, T:0.62
Consensus pattern (21 bp):
TTTTGTTGTTTATATGTTAAA
Found at i:26646883 original size:27 final size:27
Alignment explanation
Indices: 26646864--26646981 Score: 168
Period size: 27 Copynumber: 4.4 Consensus size: 27
26646854 GGTATAACAG
26646864 TCATTTTACCCTATGAGGGTATTTCGA
1 TCATTTTACCCTATGAGGGTATTTCGA
* *
26646891 TCATTTTACCCTAT-AGGGGTATTTTGG
1 TCATTTTACCCTATGA-GGGTATTTCGA
*
26646918 TCATTTTACCCTATG-GAGGTATTTTGA
1 TCATTTTACCCTATGAG-GGTATTTCGA
*
26646945 TCATTTTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGAGGGTATTTCGA
26646972 TCATTTTACC
1 TCATTTTACC
26646982 TATTTTGAGG
Statistics
Matches: 83, Mismatches: 4, Indels: 8
0.87 0.04 0.08
Matches are distributed among these distances:
26 2 0.02
27 80 0.96
28 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.19, T:0.43
Consensus pattern (27 bp):
TCATTTTACCCTATGAGGGTATTTCGA
Found at i:26646908 original size:54 final size:54
Alignment explanation
Indices: 26646850--26646966 Score: 164
Period size: 54 Copynumber: 2.2 Consensus size: 54
26646840 TTTCATCTCT
26646850 TAGGGGTATAACAGTCATTTTACCCTAT-GAGGGTATTTCGATCATTTTACCCTA
1 TAGGGGTATAACAGTCATTTTACCCTATGGA-GGTATTTCGATCATTTTACCCTA
**** *
26646904 TAGGGGTATTTTGGTCATTTTACCCTATGGAGGTATTTTGATCATTTTACCCTA
1 TAGGGGTATAACAGTCATTTTACCCTATGGAGGTATTTCGATCATTTTACCCTA
*
26646958 TGGGGGTAT
1 TAGGGGTAT
26646967 TTCGATCATT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
54 54 0.96
55 2 0.04
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.40
Consensus pattern (54 bp):
TAGGGGTATAACAGTCATTTTACCCTATGGAGGTATTTCGATCATTTTACCCTA
Found at i:26646967 original size:54 final size:54
Alignment explanation
Indices: 26646863--26646981 Score: 186
Period size: 54 Copynumber: 2.2 Consensus size: 54
26646853 GGGTATAACA
*
26646863 GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATAGGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATAGGGGTATTTCG
* *
26646917 GTCATTTTACCCTATG-GAGGTATTTTGATCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAG-GGTATTTCGATCATTTTACCCTATAGGGGTATTTCG
*
26646971 ATCATTTTACC
1 GTCATTTTACC
26646982 TATTTTGAGG
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
53 1 0.02
54 59 0.98
ACGTcount: A:0.20, C:0.18, G:0.19, T:0.43
Consensus pattern (54 bp):
GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATAGGGGTATTTCG
Found at i:26652138 original size:7 final size:8
Alignment explanation
Indices: 26652121--26652149 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
26652111 AAATAATTTT
26652121 AAAAATAA
1 AAAAATAA
26652129 AAAAATAA
1 AAAAATAA
26652137 AAAAATAA
1 AAAAATAA
26652145 AAAAA
1 AAAAA
26652150 AAGTATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAATAA
Found at i:26657901 original size:18 final size:17
Alignment explanation
Indices: 26657853--26657902 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
26657843 TTAAAATAAA
*
26657853 TATTTTATATTTAAAAT
1 TATTATATATTTAAAAT
* *
26657870 GATGATA-ATTTAAAAT
1 TATTATATATTTAAAAT
26657886 TATTATATACTTTAAAA
1 TATTATATA-TTTAAAA
26657903 ACAAAGTTGA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
16 14 0.54
17 5 0.19
18 7 0.27
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (17 bp):
TATTATATATTTAAAAT
Found at i:26661973 original size:15 final size:15
Alignment explanation
Indices: 26661953--26661984 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
26661943 TGAGTTCAAA
26661953 TGCTCCCCACATGAG
1 TGCTCCCCACATGAG
26661968 TGCTCCCCACATGAG
1 TGCTCCCCACATGAG
26661983 TG
1 TG
26661985 TGTAACATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.38, G:0.22, T:0.22
Consensus pattern (15 bp):
TGCTCCCCACATGAG
Found at i:26665312 original size:15 final size:15
Alignment explanation
Indices: 26665279--26665322 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
26665269 TAGATTTTAG
*
26665279 TTAATTAAGCTTAATGT
1 TTAATTAA--TTAAAGT
*
26665296 TTGATTAATTAAAGT
1 TTAATTAATTAAAGT
26665311 TTAATTAATTAA
1 TTAATTAATTAA
26665323 TTATAATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 17 0.71
17 7 0.29
ACGTcount: A:0.41, C:0.02, G:0.09, T:0.48
Consensus pattern (15 bp):
TTAATTAATTAAAGT
Found at i:26666462 original size:20 final size:20
Alignment explanation
Indices: 26666446--26666496 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
26666436 TAGAGTGTAT
* *
26666446 ACAGAGTCACTGAAGTGTGA
1 ACAGAGACACCGAAGTGTGA
**
26666466 ACAGAGACACCGAAGTGCAA
1 ACAGAGACACCGAAGTGTGA
*
26666486 ACAGAGGCACC
1 ACAGAGACACC
26666497 AAAGCGCAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.39, C:0.24, G:0.27, T:0.10
Consensus pattern (20 bp):
ACAGAGACACCGAAGTGTGA
Found at i:26666505 original size:20 final size:20
Alignment explanation
Indices: 26666465--26666507 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
26666455 CTGAAGTGTG
* *
26666465 AACAGAGACACCGAAGTGCA
1 AACAGAGACACCAAAGCGCA
*
26666485 AACAGAGGCACCAAAGCGCA
1 AACAGAGACACCAAAGCGCA
26666505 AAC
1 AAC
26666508 CCTTACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.47, C:0.28, G:0.23, T:0.02
Consensus pattern (20 bp):
AACAGAGACACCAAAGCGCA
Found at i:26673200 original size:8 final size:8
Alignment explanation
Indices: 26673187--26673213 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
26673177 GAGAGGTATG
26673187 AAACCTCT
1 AAACCTCT
26673195 AAACCTCT
1 AAACCTCT
26673203 AAACCTCT
1 AAACCTCT
26673211 AAA
1 AAA
26673214 TGGTGGAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.22
Consensus pattern (8 bp):
AAACCTCT
Found at i:26676519 original size:15 final size:16
Alignment explanation
Indices: 26676499--26676529 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
26676489 GTTTAAATAG
26676499 CATTTTAATG-TATTT
1 CATTTTAATGCTATTT
26676514 CATTTTAATGCTATTT
1 CATTTTAATGCTATTT
26676530 TTTCATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.26, C:0.10, G:0.06, T:0.58
Consensus pattern (16 bp):
CATTTTAATGCTATTT
Found at i:26677295 original size:12 final size:12
Alignment explanation
Indices: 26677278--26677309 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
26677268 CTTGTCGGAG
26677278 ATCCATCACACT
1 ATCCATCACACT
*
26677290 ATCCATCATACT
1 ATCCATCACACT
26677302 ATCCATCA
1 ATCCATCA
26677310 GCTATATCGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.38, G:0.00, T:0.28
Consensus pattern (12 bp):
ATCCATCACACT
Found at i:26679938 original size:140 final size:135
Alignment explanation
Indices: 26679654--26680076 Score: 596
Period size: 138 Copynumber: 3.1 Consensus size: 135
26679644 AGAGAACATA
*
26679654 AATATAATGAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAAAATTTAT
1 AATATAATCAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTAC-AAATTTAT
* ** * *
26679719 TAATATAAACATTTATATTAATT-ATTTATGTCAAAATGCAAAAGACATGGAAATAAATATTATT
65 TAATATAAACAATTATATTAATTAATTTA-GTCAAAATATAAAAGACATGGAAATTAATATTCTT
26679783 TTGGAAAG
129 TT-GAAAG
*
26679791 AATATAATCAATATATTAATTTGATTCATACAAAATATTAATTGTATATATATTTTATCAAATTT
1 AATATAATCAATATATGAATTTGATTCATACAAAATATTAATTG--TATATATTTTA-CAAATTT
* * *
26679856 ATTAATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGACATTAATATCC
63 ATTAATATAAACAATTATATTAATTAATTT-AGTCAAAATATAAAAGACATGGAAATTAATATTC
26679921 TTTTGCAAAG
127 TTTTG-AAAG
* *
26679931 AATATAATTAATATATGAATTTGATTCAAACAAAATATTAATTGTATATATTTTACCAAATTTAT
1 AATATAATCAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTA-CAAATTTAT
* * *
26679996 TAATATAAACAATTATATTAATGAAGTTTGGTCAAAATATAAAAGACATAGAAATTAATATTCTT
65 TAATATAAACAATTATATTAATTAA-TTTAGTCAAAATATAAAAGACATGGAAATTAATATTCTT
*
26680061 TTAGAAAT
129 TT-GAAAG
26680069 AATATAAT
1 AATATAAT
26680077 TCATTTTTCT
Statistics
Matches: 258, Mismatches: 20, Indels: 15
0.88 0.07 0.05
Matches are distributed among these distances:
137 42 0.16
138 88 0.34
139 46 0.18
140 81 0.31
141 1 0.00
ACGTcount: A:0.47, C:0.06, G:0.07, T:0.39
Consensus pattern (135 bp):
AATATAATCAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAAATTTATT
AATATAAACAATTATATTAATTAATTTAGTCAAAATATAAAAGACATGGAAATTAATATTCTTTT
GAAAG
Found at i:26692761 original size:58 final size:59
Alignment explanation
Indices: 26692647--26693027 Score: 296
Period size: 58 Copynumber: 6.6 Consensus size: 59
26692637 TTAAGATTTT
* *** * * * * *
26692647 GCCACGAAGGCATTCCTTTTAACAGAG-TTTTCC-ACAAGGTATTCCTTTAATAGAGATG
1 GCCACAAAGGCA-TCCTTTTAACAGAGATCAGCCAAAAAGGCATTCATTTAATTGAGATA
* * * * *
26692705 GCCATAAAGACATCCTTTTAACATAGAT-AGCCATAAAGACATTCATTTAATTGAGATA
1 GCCACAAAGGCATCCTTTTAACAGAGATCAGCCAAAAAGGCATTCATTTAATTGAGATA
* * *
26692763 GCCACAAAGGCATCCTTTTAACAAAGATC-GCCAAAAAGTCATTCATTTAATTTAGATCA
1 GCCACAAAGGCATCCTTTTAACAGAGATCAGCCAAAAAGGCATTCATTTAATTGAGAT-A
* * * * * *
26692822 -CTACAAAGGCATCCTTTCAACAGAGATCGGCAAAAAAGGCATTCATTTAACTAAGATA
1 GCCACAAAGGCATCCTTTTAACAGAGATCAGCCAAAAAGGCATTCATTTAATTGAGATA
* * * * *
26692880 TCCACAAAGGCTTCCTTATAACAGAGATCA-CCATAAAGGCATTCATTTAACTGAGATA
1 GCCACAAAGGCATCCTTTTAACAGAGATCAGCCAAAAAGGCATTCATTTAATTGAGATA
* * * * * * * *
26692938 GCCACAAAGGCATTCATTTAACTA-AGA-CTGCCACAAAGGC-TTCGTTATAACTAAGATC
1 GCCACAAAGGCATCCTTTTAAC-AGAGATCAGCCAAAAAGGCATTCATT-TAATTGAGATA
* * * *
26692996 GCCACAAATGCTTTCTTATAACAGAGAT-AGCC
1 GCCACAAAGGCATCCTTTTAACAGAGATCAGCC
26693028 GTAAAGGTGT
Statistics
Matches: 263, Mismatches: 49, Indels: 22
0.79 0.15 0.07
Matches are distributed among these distances:
57 22 0.08
58 191 0.73
59 50 0.19
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.27
Consensus pattern (59 bp):
GCCACAAAGGCATCCTTTTAACAGAGATCAGCCAAAAAGGCATTCATTTAATTGAGATA
Found at i:26692811 original size:29 final size:29
Alignment explanation
Indices: 26692678--26693003 Score: 211
Period size: 29 Copynumber: 11.2 Consensus size: 29
26692668 ACAGAGTTTT
* * *
26692678 CCAC-AAGGTATTCCTTTAA-TAGAGATGG
1 CCACAAAGGCATTCATTTAACTA-AGATCG
* * * * *
26692706 CCATAAAGACATCCTTTTAAC-ATAGATAG
1 CCACAAAGGCATTCATTTAACTA-AGATCG
* * * * *
26692735 CCATAAAGACATTCATTTAATTGAGATAG
1 CCACAAAGGCATTCATTTAACTAAGATCG
* * *
26692764 CCACAAAGGCATCCTTTTAACAAAGATCG
1 CCACAAAGGCATTCATTTAACTAAGATCG
* * * * *
26692793 CCAAAAAGTCATTCATTTAATTTAGATCA
1 CCACAAAGGCATTCATTTAACTAAGATCG
* *
26692822 CTACAAAGGCA-TCCTTTCAAC-AGAGATCGG
1 CCACAAAGGCATTCATTT-AACTA-AGATC-G
* * **
26692852 CAAAAAAGGCATTCATTTAACTAAGATAT
1 CCACAAAGGCATTCATTTAACTAAGATCG
* *
26692881 CCACAAAGGC-TTCCTTATAAC-AGAGATCA
1 CCACAAAGGCATTCATT-TAACTA-AGATCG
* * *
26692910 CCATAAAGGCATTCATTTAACTGAGATAG
1 CCACAAAGGCATTCATTTAACTAAGATCG
26692939 CCACAAAGGCATTCATTTAACTAAGA-CTG
1 CCACAAAGGCATTCATTTAACTAAGATC-G
*
26692968 CCACAAAGGC-TTCGTTATAACTAAGATCG
1 CCACAAAGGCATTCATT-TAACTAAGATCG
26692997 CCACAAA
1 CCACAAA
26693004 TGCTTTCTTA
Statistics
Matches: 230, Mismatches: 53, Indels: 29
0.74 0.17 0.09
Matches are distributed among these distances:
28 19 0.08
29 183 0.80
30 22 0.10
31 6 0.03
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.25
Consensus pattern (29 bp):
CCACAAAGGCATTCATTTAACTAAGATCG
Found at i:26692972 original size:87 final size:87
Alignment explanation
Indices: 26692648--26693027 Score: 281
Period size: 87 Copynumber: 4.4 Consensus size: 87
26692638 TAAGATTTTG
* * * ** * * * *
26692648 CCACGAAGGCATTCCTTTTAACAGAGTTTTCCAC-AAGGTATTCCTTTAA-TAGAGATGGCCATA
1 CCACAAAGGCATT-CATTTAACAGAGATAGCCACAAAGGCATTCATTTAACTA-AGATAGCCACA
* * *
26692711 AAGACATCCTTTTAACATAGAT-A
64 AAGGCTTCCTTATAACATAGATCA
* * ** * * * * *
26692734 GCCATAAAGACATTCATTTAATTGAGATAGCCACAAAGGCATCCTTTTAACAAAGATCGCCAAAA
1 -CCACAAAGGCATTCATTTAACAGAGATAGCCACAAAGGCATTCATTTAACTAAGATAGCCACAA
* * **
26692799 AGTCATTCATT-TAATTTAGATCA
65 AGGC-TTCCTTATAACATAGATCA
* * * * * *
26692822 CTACAAAGGCA-TCCTTTCAACAGAGATCGGCAAAAAAGGCATTCATTTAACTAAGATATCCACA
1 CCACAAAGGCATTCATTT-AACAGAGAT-AGCCACAAAGGCATTCATTTAACTAAGATAGCCACA
*
26692886 AAGGCTTCCTTATAACAGAGATCA
64 AAGGCTTCCTTATAACATAGATCA
* *
26692910 CCATAAAGGCATTCATTTAACTGAGATAGCCACAAAGGCATTCATTTAACTAAGACT-GCCACAA
1 CCACAAAGGCATTCATTTAACAGAGATAGCCACAAAGGCATTCATTTAACTAAGA-TAGCCACAA
* *
26692974 AGGCTTCGTTATAAC-TAAGATCG
65 AGGCTTCCTTATAACAT-AGATCA
* *
26692997 CCACAAATGCTTTC-TTATAACAGAGATAGCC
1 CCACAAAGGCATTCATT-TAACAGAGATAGCC
26693028 GTAAAGGTGT
Statistics
Matches: 227, Mismatches: 55, Indels: 22
0.75 0.18 0.07
Matches are distributed among these distances:
86 21 0.09
87 137 0.60
88 64 0.28
89 5 0.02
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (87 bp):
CCACAAAGGCATTCATTTAACAGAGATAGCCACAAAGGCATTCATTTAACTAAGATAGCCACAAA
GGCTTCCTTATAACATAGATCA
Found at i:26693023 original size:29 final size:30
Alignment explanation
Indices: 26692647--26693090 Score: 178
Period size: 29 Copynumber: 15.4 Consensus size: 30
26692637 TTAAGATTTT
* * * * *
26692647 GCCACGAAGGCATTCCTTTTAACAGAGTTT
1 GCCACAAAGGCATTCATTATAACAGAGATC
* * * * *
26692677 TCCAC-AAGGTATTCCTT-TAATAGAGATG
1 GCCACAAAGGCATTCATTATAACAGAGATC
* * * * * *
26692705 GCCATAAAGACA-TCCTTTTAACATAGATA
1 GCCACAAAGGCATTCATTATAACAGAGATC
* * ** *
26692734 GCCATAAAGACATTCATT-TAATTGAGATA
1 GCCACAAAGGCATTCATTATAACAGAGATC
* * *
26692763 GCCACAAAGGCA-TCCTTTTAACAAAGATC
1 GCCACAAAGGCATTCATTATAACAGAGATC
* * ***
26692792 GCCAAAAAGTCATTCATT-TAATTTAGATC
1 GCCACAAAGGCATTCATTATAACAGAGATC
* * *
26692821 ACTACAAAGGCA-TCCTT-TCAACAGAGATC
1 GCCACAAAGGCATTCATTAT-AACAGAGATC
* * *
26692850 GGCAAAAAAGGCATTCATT-TAACTA-AGATA
1 -GCCACAAAGGCATTCATTATAAC-AGAGATC
* *
26692880 TCCACAAAGGC-TTCCTTATAACAGAGATC
1 GCCACAAAGGCATTCATTATAACAGAGATC
* * * *
26692909 ACCATAAAGGCATTCATT-TAACTGAGATA
1 GCCACAAAGGCATTCATTATAACAGAGATC
26692938 GCCACAAAGGCATTCATT-TAACTA-AGA-C
1 GCCACAAAGGCATTCATTATAAC-AGAGATC
*
26692966 TGCCACAAAGGC-TTCGTTATAACTA-AGATC
1 -GCCACAAAGGCATTCATTATAAC-AGAGATC
* * *
26692996 GCCACAAATGCTTTC-TTATAACAGAGATA
1 GCCACAAAGGCATTCATTATAACAGAGATC
** ** * *
26693025 GCCGTAAAGGTGTCCA-T-T-A-AGAGATA
1 GCCACAAAGGCATTCATTATAACAGAGATC
* ** *
26693051 GCGACAAAGGCATTCATT-TAATTGAGATA
1 GCCACAAAGGCATTCATTATAACAGAGATC
26693080 GCCACAAAGGC
1 GCCACAAAGGC
26693091 TTACGTATAC
Statistics
Matches: 319, Mismatches: 73, Indels: 45
0.73 0.17 0.10
Matches are distributed among these distances:
26 17 0.05
27 3 0.01
28 39 0.12
29 217 0.68
30 37 0.12
31 6 0.02
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (30 bp):
GCCACAAAGGCATTCATTATAACAGAGATC
Found at i:26698445 original size:25 final size:25
Alignment explanation
Indices: 26698417--26698501 Score: 109
Period size: 25 Copynumber: 3.4 Consensus size: 25
26698407 CCTATACATG
26698417 TATGCTCATACGAGCTATGAATCGA
1 TATGCTCATACGAGCTATGAATCGA
* * * *
26698442 TATGCTC-TCATGAGTTGTGAATCGG
1 TATGCTCAT-ACGAGCTATGAATCGA
*
26698467 TAAGCTCATACGAGCTATGAATCGA
1 TATGCTCATACGAGCTATGAATCGA
26698492 TATGCTCATA
1 TATGCTCATA
26698502 AGAGTCGTAG
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
24 1 0.02
25 46 0.96
26 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (25 bp):
TATGCTCATACGAGCTATGAATCGA
Found at i:26703056 original size:20 final size:19
Alignment explanation
Indices: 26703016--26703061 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
26703006 CATGCTTTCT
*
26703016 ATTCACATTTTCATATTTA
1 ATTCACATTTTCAAATTTA
*
26703035 ATTCACATTTTTAAATTATA
1 ATTCACATTTTCAAATT-TA
*
26703055 ATCCACA
1 ATTCACA
26703062 ATCACGTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.46
Consensus pattern (19 bp):
ATTCACATTTTCAAATTTA
Found at i:26703457 original size:18 final size:17
Alignment explanation
Indices: 26703411--26703464 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
26703401 TTTCCAATTC
*
26703411 TCAATTCAAATTGACTT
1 TCAATTCAAATTCACTT
* *
26703428 TCATTTCAAAATTTACTT
1 TCAATTC-AAATTCACTT
26703446 TCAATATCAAATTCACTT
1 TCAAT-TCAAATTCACTT
26703464 T
1 T
26703465 TTCATTCACT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
17 6 0.19
18 23 0.74
19 2 0.06
ACGTcount: A:0.35, C:0.19, G:0.02, T:0.44
Consensus pattern (17 bp):
TCAATTCAAATTCACTT
Found at i:26704472 original size:18 final size:18
Alignment explanation
Indices: 26704449--26704496 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
26704439 TAATAATAAC
*
26704449 AATAATAATTAT-TATTAT
1 AATAATAAATATCTATT-T
26704467 AATAATAAATATCTATTT
1 AATAATAAATATCTATTT
*
26704485 AATAACAAATAT
1 AATAATAAATAT
26704497 AAATATTACA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
18 23 0.85
19 4 0.15
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (18 bp):
AATAATAAATATCTATTT
Found at i:26704646 original size:30 final size:31
Alignment explanation
Indices: 26704582--26704648 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 31
26704572 TATTTATCAT
26704582 ATAAAAATCTTTTACTAATTAGTAATAAATA
1 ATAAAAATCTTTTACTAATTAGTAATAAATA
26704613 ATAAAATATCTTTTTACTAATTA-TATATAAATA
1 ATAAAA-ATC-TTTTACTAATTAGTA-ATAAATA
26704646 ATA
1 ATA
26704649 CATATGTACT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
31 6 0.18
32 5 0.15
33 22 0.67
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.42
Consensus pattern (31 bp):
ATAAAAATCTTTTACTAATTAGTAATAAATA
Found at i:26704761 original size:29 final size:29
Alignment explanation
Indices: 26704712--26704768 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
26704702 GTCTTTTCCT
* * *
26704712 AATTTATTTCATGATATAATAATATAATC
1 AATTTATTTCATAATACAATAAAATAATC
26704741 AATTTAATTT-ATAATACAATAAAATAAT
1 AATTT-ATTTCATAATACAATAAAATAAT
26704769 AACAATAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (29 bp):
AATTTATTTCATAATACAATAAAATAATC
Found at i:26706116 original size:226 final size:225
Alignment explanation
Indices: 26705722--26706168 Score: 867
Period size: 226 Copynumber: 2.0 Consensus size: 225
26705712 TGTTCATCAT
26705722 AACAACAACAAAATTAAAAGGATGGGGAACAAGAATCAAATCCAGTGTTTCTCCGTGGCTTGATT
1 AACAACAACAAAATTAAAAGGATGGGGAACAAGAATCAAATCCAGTGTTTCTCCGTGGCTTGATT
26705787 AGTTTGCTCCACTCCTCATTCTCCGCTTGTTCTTGTCGAACCGAGGCTTCTACGAACACTGAAAT
66 AGTTTGCTCCACTCCTCATTCTCCGCTTGTTCTTGTCGAACCGAGGCTTCTACGAACACTGAAAT
26705852 GCTGCTCCAAATGGTGGGATTTATAGGTTTGAGATGATGTTGAAGTGAGAAGCCAAGGGGGGTAT
131 GCTGCTCCAAATGGTGGGATTTATAGGTTTGAGATGATGTTGAAGTGAGAAGCCAA-GGGGGTAT
26705917 TTATAGGTTGAGAACGCTTGATACGAGCCAA
195 TTATAGGTTGAGAACGCTTGATACGAGCCAA
26705948 AACAACAACAAAATTAAAAGGATGGGGAACAAGAATCAAATCCAGTGTTTCTCCGTGGCTTGATT
1 AACAACAACAAAATTAAAAGGATGGGGAACAAGAATCAAATCCAGTGTTTCTCCGTGGCTTGATT
*
26706013 AGTTTGCTCCACTCCTCATTCTCCGCTTGTTCTTGTCGAACCGAGGCTTCTACGAACACTTAAAT
66 AGTTTGCTCCACTCCTCATTCTCCGCTTGTTCTTGTCGAACCGAGGCTTCTACGAACACTGAAAT
*
26706078 GCTGCTCTAAATGGTGGGATTTATAGGTTTGAGATGATGTTGAAGTGAGAAGCCAAGGGGGTATT
131 GCTGCTCCAAATGGTGGGATTTATAGGTTTGAGATGATGTTGAAGTGAGAAGCCAAGGGGGTATT
26706143 TATAGGTTGAGAACGCTTGATACGAG
196 TATAGGTTGAGAACGCTTGATACGAG
26706169 TCACAAAGGC
Statistics
Matches: 219, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
225 35 0.16
226 184 0.84
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (225 bp):
AACAACAACAAAATTAAAAGGATGGGGAACAAGAATCAAATCCAGTGTTTCTCCGTGGCTTGATT
AGTTTGCTCCACTCCTCATTCTCCGCTTGTTCTTGTCGAACCGAGGCTTCTACGAACACTGAAAT
GCTGCTCCAAATGGTGGGATTTATAGGTTTGAGATGATGTTGAAGTGAGAAGCCAAGGGGGTATT
TATAGGTTGAGAACGCTTGATACGAGCCAA
Found at i:26726039 original size:16 final size:17
Alignment explanation
Indices: 26726020--26726051 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
26726010 TAGTGTATTA
26726020 TATTTTTAAA-AAAAAT
1 TATTTTTAAATAAAAAT
26726036 TATTTTTAAATAAAAA
1 TATTTTTAAATAAAAA
26726052 ACTAATCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TATTTTTAAATAAAAAT
Found at i:26726503 original size:5 final size:5
Alignment explanation
Indices: 26726494--26726536 Score: 52
Period size: 5 Copynumber: 8.8 Consensus size: 5
26726484 CTCTCTCACT
* * *
26726494 ATATT ATATT ATAT- ATATA ATATC ATATC ATATC ATATC ATAT
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATAT
26726537 ATTAATAGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
4 4 0.11
5 32 0.89
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (5 bp):
ATATC
Found at i:26726614 original size:256 final size:249
Alignment explanation
Indices: 26726144--26726636 Score: 649
Period size: 256 Copynumber: 1.9 Consensus size: 249
26726134 TGAGCACCTC
* * *
26726144 TATATGTTAATTATTATAATATATTACTGTTTATTATTATACTGGTTAAAATATGCTCCAAGTCC
1 TATATATTAATTATTATAATATATTACCGTTTATTATTATACTAGTTAAAATATGCTCCAAGT-C
* * *
26726209 CTATATTTTTCTTACATTTGAAAGTTAGCCCTCCTACTATAATGTTATATCATATCATATAGTAT
65 CTATATTTTTCTTACATTTAAAAGTTAGCCCTCCTACTATAATATTATATAATATCATATAGTAT
* *
26726274 ATAATATGTTAATAGTTTATATATATATGCATCAATGATTAAGCATTATAATATCATGTAATACT
130 ATAATATATTAATAGTTTATATATATATGCATCAATGATTAAACATTATAATATCATGTAATACT
*
26726339 ATATCTTTTATTGTAATCTATATTATAATAATAGTTATATATAATAGCAATACAT
195 ATATCTTTTATTATAATCTATATTATAATAATAGTTATATATAATAGCAATACAT
* * * *
26726394 TATATATTACTTATTAT-ATATATTACCGTTTATTATTCTACTAGTTGAAATATGCTCTAAGT-C
1 TATATATTAATTATTATAATATATTACCGTTTATTATTATACTAGTTAAAATATGCTCCAAGTCC
26726457 TATATTTTTCTTACATTTAAAAGTTAGCTCTCTCACTA-TATTATATTATATATATAATATCATA
66 TATATTTTTCTTACATTTAAAAGTTAGC-C-CTC-CTACTA-TA-A-TAT-TATATAATATCATA
*
26726521 TCA-TATCATATCATATATTAATAG-TT-TATATATATGCA-CTGATGATTAAACATTATAATAT
124 T-AGTAT-ATA--ATATATTAATAGTTTATATATATATGCATC-AATGATTAAACATTATAATAT
* * *
26726582 CACATGTAATATTTTATCTTTTATTATAATCTATATTATAATAATATTTATATAT
184 --CATGTAATACTATATCTTTTATTATAATCTATATTATAATAATAGTTATATAT
26726637 GTATTAATCT
Statistics
Matches: 212, Mismatches: 17, Indels: 22
0.84 0.07 0.09
Matches are distributed among these distances:
247 28 0.13
248 1 0.00
249 45 0.21
250 20 0.09
251 1 0.00
252 2 0.01
253 18 0.08
254 35 0.17
255 2 0.01
256 60 0.28
ACGTcount: A:0.37, C:0.11, G:0.06, T:0.46
Consensus pattern (249 bp):
TATATATTAATTATTATAATATATTACCGTTTATTATTATACTAGTTAAAATATGCTCCAAGTCC
TATATTTTTCTTACATTTAAAAGTTAGCCCTCCTACTATAATATTATATAATATCATATAGTATA
TAATATATTAATAGTTTATATATATATGCATCAATGATTAAACATTATAATATCATGTAATACTA
TATCTTTTATTATAATCTATATTATAATAATAGTTATATATAATAGCAATACAT
Found at i:26740216 original size:16 final size:14
Alignment explanation
Indices: 26740197--26740231 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 14
26740187 ATTTATAAAC
26740197 TTTAATTATTATTATA
1 TTTAATTATT-TT-TA
26740213 TTTAATTATTTTTA
1 TTTAATTATTTTTA
26740227 TTTAA
1 TTTAA
26740232 AGTGTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.37
15 2 0.11
16 10 0.53
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
TTTAATTATTTTTA
Found at i:26752265 original size:7 final size:7
Alignment explanation
Indices: 26752253--26752279 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
26752243 TTGCTCTTGG
26752253 TCTCAAT
1 TCTCAAT
26752260 TCTCAAT
1 TCTCAAT
26752267 TCTCAAT
1 TCTCAAT
26752274 TCTCAA
1 TCTCAA
26752280 AATCAAATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.41
Consensus pattern (7 bp):
TCTCAAT
Found at i:26752555 original size:16 final size:17
Alignment explanation
Indices: 26752525--26752557 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
26752515 CTGAAAGAGG
*
26752525 AAATATTTTCTTTCAAA
1 AAATATTTTCCTTCAAA
26752542 AAAT-TTTTCCTTCAAA
1 AAATATTTTCCTTCAAA
26752558 TCTGCAAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.45
Consensus pattern (17 bp):
AAATATTTTCCTTCAAA
Found at i:26752836 original size:39 final size:40
Alignment explanation
Indices: 26752718--26752853 Score: 116
Period size: 40 Copynumber: 3.5 Consensus size: 40
26752708 GTGTCTGGAC
* * *
26752718 AAAAAACGCCACTAAAAATCAAGCAGTAGCGGCGCTTTTGT
1 AAAAAACGCCGCTAAAAATCAAGCATTAGCGGCG-TTTTTT
* ** * * **
26752759 -AAAACCGCCGCTAAAGGTCGATCATTAGCGGCAATTTTT
1 AAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGTTTTTT
*
26752798 AAAAAACACCGCTAAAAAT-AAGCATTAGCGGCGTTTTTT
1 AAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGTTTTTT
** *
26752837 GGAAAGCGCCGC-AAAAA
1 AAAAAACGCCGCTAAAAA
26752854 GCCTAAGCCC
Statistics
Matches: 72, Mismatches: 22, Indels: 5
0.73 0.22 0.05
Matches are distributed among these distances:
38 5 0.07
39 28 0.39
40 39 0.54
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (40 bp):
AAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGTTTTTT
Found at i:26752956 original size:41 final size:41
Alignment explanation
Indices: 26752886--26753149 Score: 338
Period size: 41 Copynumber: 6.5 Consensus size: 41
26752876 TAGTTTTTGG
*
26752886 GGTCTTTAGCGGCATTTTCTGAA-AAGCGCCGCTAATGCTCA
1 GGTCTTTAGCGGCGTTTT-TGAATAAGCGCCGCTAATGCTCA
* * *
26752927 GGTCTTTAGCGGCGTTTTTGAACATGCGCCGCTAATGCTCC
1 GGTCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTCA
* *
26752968 GGTCTTTAGCGGCGTTTTTGATTAAGTGCCGCTAATGCTCA
1 GGTCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTCA
* * * * *
26753009 GGTCTTTAGTGTCATTTTTTAATAAGCGCCGCTAATTCTCA
1 GGTCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTCA
* * *
26753050 GGTC-TTAGCGGCATTTTTTAATAACCGCCGCTAATGCTCA
1 GGTCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTCA
*
26753090 GGTCTTTAGCGGCGTTTTTTAATAAGCGCCGCTAATGCTC-
1 GGTCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTCA
26753130 -GTACCTTTAGCGGCGTTTTT
1 GGT--CTTTAGCGGCGTTTTT
26753150 AAGGAAGCAC
Statistics
Matches: 198, Mismatches: 21, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 2 0.01
40 40 0.20
41 156 0.79
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (41 bp):
GGTCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTCA
Found at i:26753139 original size:122 final size:122
Alignment explanation
Indices: 26752887--26753129 Score: 337
Period size: 122 Copynumber: 2.0 Consensus size: 122
26752877 AGTTTTTGGG
* * * *
26752887 GTCTTTAGCGGCATTTTCTGAA-AAGCGCCGCTAATGCTCAGGTCTTTAGCGGCGTTTTTGAACA
1 GTCTTTAGTGTCATTTT-TTAATAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCATTTTTGAACA
** * * *
26752951 TGCGCCGCTAATGCTCCGGTCTTTAGCGGCGTTTTTGATTAAGTGCCGCTAATGCTCA
65 ACCGCCGCTAATGCTCAGGTCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTCA
* * *
26753009 GGTCTTTAGTGTCATTTTTTAATAAGCGCCGCTAATTCTCAGGTC-TTAGCGGCATTTTTTAATA
1 -GTCTTTAGTGTCATTTTTTAATAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCATTTTTGAACA
*
26753073 ACCGCCGCTAATGCTCAGGTCTTTAGCGGCGTTTTTTAATAAGCGCCGCTAATGCTC
65 ACCGCCGCTAATGCTCAGGTCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTC
26753130 GTACCTTTAG
Statistics
Matches: 106, Mismatches: 13, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
122 70 0.66
123 36 0.34
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (122 bp):
GTCTTTAGTGTCATTTTTTAATAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCATTTTTGAACAA
CCGCCGCTAATGCTCAGGTCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTCA
Found at i:26753757 original size:20 final size:21
Alignment explanation
Indices: 26753723--26753761 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26753713 TAAATAATGT
26753723 TTAGGGGTTAGGGATTTAGGG
1 TTAGGGGTTAGGGATTTAGGG
*
26753744 TTAGGGTTTA-GGATTTAG
1 TTAGGGGTTAGGGATTTAG
26753762 ATTAATTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.21, C:0.00, G:0.41, T:0.38
Consensus pattern (21 bp):
TTAGGGGTTAGGGATTTAGGG
Found at i:26753761 original size:14 final size:14
Alignment explanation
Indices: 26753722--26753755 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
26753712 TTAAATAATG
26753722 TTTAGGGGTTAGGGA
1 TTTA-GGGTTAGGGA
26753737 TTTAGGGTTAGGG-
1 TTTAGGGTTAGGGA
26753750 TTTAGG
1 TTTAGG
26753756 ATTTAGATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 9 0.47
15 4 0.21
ACGTcount: A:0.18, C:0.00, G:0.44, T:0.38
Consensus pattern (14 bp):
TTTAGGGTTAGGGA
Found at i:26753999 original size:177 final size:179
Alignment explanation
Indices: 26753743--26754170 Score: 749
Period size: 177 Copynumber: 2.4 Consensus size: 179
26753733 GGGATTTAGG
26753743 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGGT
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGGT
*
26753808 TAGGGGTTAGTGATTCGGGGTCGAGTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAAATT
66 TAGGGGTTAGTGATTCGGGGTCGAGTTAAGGTTTAGGATTTAGATTAATTAGTGTTTTTTAAATT
26753873 -TATATATTAAATAATGTTTAGGGG-TTAGGGGTTAGTGATTCGGGGTCGA
131 ATATATATTAAATAATGTTTAGGGGTTTA-GGGTTAGTGATTC-GGGTCGA
*
26753922 GTTAGGATTTAGGATTTAGATTAATTAGTGTTTTTTAA-TT-TATATTAAATAATGTTTAGGGGT
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGGT
*
26753985 TAGGGGTTAGTGATTCGGGGTCGAGTTAAGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTT
66 TAGGGGTTAGTGATTCGGGGTCGAGTTAAGGTTTAGGATTTAGATTAATTAGTGTTTTTTAAATT
*
26754050 ATATATATTAAATAATGTTTAGGGGTTTAGGGTTAGTGATTCGGGTTGA
131 ATATATATTAAATAATGTTTAGGGGTTTAGGGTTAGTGATTCGGGTCGA
* *
26754099 GTTAGGGTTTAGGATTCAGA-TAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGTT
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGGT
26754163 TAGGGGTT
66 TAGGGGTT
26754171 TGAGGTTTGA
Statistics
Matches: 238, Mismatches: 7, Indels: 9
0.94 0.03 0.04
Matches are distributed among these distances:
176 17 0.07
177 112 0.47
178 69 0.29
179 40 0.17
ACGTcount: A:0.27, C:0.02, G:0.26, T:0.45
Consensus pattern (179 bp):
GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGGT
TAGGGGTTAGTGATTCGGGGTCGAGTTAAGGTTTAGGATTTAGATTAATTAGTGTTTTTTAAATT
ATATATATTAAATAATGTTTAGGGGTTTAGGGTTAGTGATTCGGGTCGA
Found at i:26754020 original size:87 final size:89
Alignment explanation
Indices: 26753743--26754170 Score: 740
Period size: 90 Copynumber: 4.8 Consensus size: 89
26753733 GGGATTTAGG
26753743 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGGT
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGGT
26753808 TAGGGGTTAGTGATTCGGGGTCGA
66 TAGGGGTTAGTGATTCGGGGTCGA
26753832 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAAATTTATATATTAAATAATGTTTAGGGG
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTT-AATTTATATATTAAATAATGTTTAGGGG
26753897 TTAGGGGTTAGTGATTCGGGGTCGA
65 TTAGGGGTTAGTGATTCGGGGTCGA
*
26753922 GTTAGGATTTAGGATTTAGATTAATTAGTGTTTTTTAA-TT-TATATTAAATAATGTTTAGGGGT
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGGT
26753985 TAGGGGTTAGTGATTCGGGGTCGA
66 TAGGGGTTAGTGATTCGGGGTCGA
*
26754009 GTTAAGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATATTAAATAATGTTTAGGG
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAA-TT-TATATATTAAATAATGTTTAGGG
*
26754074 GTTTA-GGGTTAGTGATTC-GGGTTGA
64 G-TTAGGGGTTAGTGATTCGGGGTCGA
* *
26754099 GTTAGGGTTTAGGATTCAGA-TAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGTT
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGGT
26754163 TAGGGGTT
66 TAGGGGTT
26754171 TGAGGTTTGA
Statistics
Matches: 325, Mismatches: 7, Indels: 16
0.93 0.02 0.05
Matches are distributed among these distances:
86 3 0.01
87 111 0.34
88 4 0.01
89 56 0.17
90 113 0.35
91 35 0.11
92 3 0.01
ACGTcount: A:0.27, C:0.02, G:0.26, T:0.45
Consensus pattern (89 bp):
GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGGT
TAGGGGTTAGTGATTCGGGGTCGA
Found at i:26754227 original size:17 final size:18
Alignment explanation
Indices: 26754205--26754243 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
26754195 AGTTAGTGAT
26754205 TTAAGGTTT-AGATCAGA
1 TTAAGGTTTAAGATCAGA
*
26754222 TTAAGGTTTAAGCTCAGA
1 TTAAGGTTTAAGATCAGA
26754240 TTAA
1 TTAA
26754244 TTAGTTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.36
Consensus pattern (18 bp):
TTAAGGTTTAAGATCAGA
Found at i:26755606 original size:38 final size:38
Alignment explanation
Indices: 26755563--26755648 Score: 163
Period size: 38 Copynumber: 2.3 Consensus size: 38
26755553 AGATAATCCT
26755563 GTCATTTATCCGGTTTGTTTGAATAATTTCAACTTCCA
1 GTCATTTATCCGGTTTGTTTGAATAATTTCAACTTCCA
*
26755601 GTCATTTATCCGGTTTGTTTGAATAATTTCAACTTCCT
1 GTCATTTATCCGGTTTGTTTGAATAATTTCAACTTCCA
26755639 GTCATTTATC
1 GTCATTTATC
26755649 ATTACAAATT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.22, C:0.19, G:0.13, T:0.47
Consensus pattern (38 bp):
GTCATTTATCCGGTTTGTTTGAATAATTTCAACTTCCA
Found at i:26756042 original size:33 final size:33
Alignment explanation
Indices: 26756005--26756067 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
26755995 GATCTTTAAG
* **
26756005 TTGGTTATTTTTTTTTTGTATAGTTTAATTTTT
1 TTGGTTATATTTTAGTTGTATAGTTTAATTTTT
26756038 TTGGTTATATTTTAGTTGTATAGTTTAATT
1 TTGGTTATATTTTAGTTGTATAGTTTAATT
26756068 ATTATTTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.19, C:0.00, G:0.14, T:0.67
Consensus pattern (33 bp):
TTGGTTATATTTTAGTTGTATAGTTTAATTTTT
Found at i:26773004 original size:20 final size:21
Alignment explanation
Indices: 26772970--26773008 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26772960 TAAATAATGT
26772970 TTAGGGGTTAGGGATTTAGGG
1 TTAGGGGTTAGGGATTTAGGG
*
26772991 TTAGGGTTTA-GGATTTAG
1 TTAGGGGTTAGGGATTTAG
26773009 ATTAATTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.21, C:0.00, G:0.41, T:0.38
Consensus pattern (21 bp):
TTAGGGGTTAGGGATTTAGGG
Found at i:26773008 original size:14 final size:14
Alignment explanation
Indices: 26772969--26773002 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
26772959 TTAAATAATG
26772969 TTTAGGGGTTAGGGA
1 TTTA-GGGTTAGGGA
26772984 TTTAGGGTTAGGG-
1 TTTAGGGTTAGGGA
26772997 TTTAGG
1 TTTAGG
26773003 ATTTAGATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 9 0.47
15 4 0.21
ACGTcount: A:0.18, C:0.00, G:0.44, T:0.38
Consensus pattern (14 bp):
TTTAGGGTTAGGGA
Found at i:26773096 original size:81 final size:81
Alignment explanation
Indices: 26772910--26773227 Score: 392
Period size: 89 Copynumber: 3.8 Consensus size: 81
26772900 TCGATGTTAG
* * * * * * *
26772910 GTTAGAGTTTAGGGTTTAAACTAATTAATATATTTTAAATTATATAATATTAAATAATGTTTAGG
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGT-TTTTTAATT-TAT-ATATTAAATAATGTTTAGG
* * *
26772975 GGTTAGGGATT----TAGG
63 GGTTAGTGATTCGGGTCGA
26772990 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGGT
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGGT
26773055 TAGTGATTCGGGTCGA
66 TAGTGATTCGGGTCGA
* *
26773071 GTTAGGGTTTAAGATTTAGATTAATTAGTGTTTTTGAATTTATATATTAAATAATGTTTAGGGGT
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATG--T-----T
26773136 TAGGGGTTAGTGATTCGGGGTCGA
59 TAGGGGTTAGTGATTC-GGGTCGA
*
26773160 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGTT
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGGT
26773225 TAG
66 TAG
26773228 GGGTAGGGGT
Statistics
Matches: 211, Mismatches: 15, Indels: 22
0.85 0.06 0.09
Matches are distributed among these distances:
77 29 0.14
78 3 0.01
79 8 0.04
80 25 0.12
81 56 0.27
82 10 0.05
83 1 0.00
87 1 0.00
88 17 0.08
89 61 0.29
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.45
Consensus pattern (81 bp):
GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGGT
TAGTGATTCGGGTCGA
Found at i:26773200 original size:89 final size:87
Alignment explanation
Indices: 26772990--26773231 Score: 397
Period size: 89 Copynumber: 2.8 Consensus size: 87
26772980 GGGATTTAGG
26772990 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATG--T----TT
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGTT
26773049 AGGGGTTAGTGATTCGGGTCGA
66 AGGGGTTAGTGATTCGGGTCGA
* *
26773071 GTTAGGGTTTAAGATTTAGATTAATTAGTGTTTTTGAATTTATATATTAAATAATGTTTAGGGGT
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTA-GGGT
26773136 TAGGGGTTAGTGATTCGGGGTCGA
65 TAGGGGTTAGTGATTC-GGGTCGA
26773160 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGTT
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGG-T
26773225 TAGGGGT
65 TAGGGGT
26773232 AGGGGTTTGG
Statistics
Matches: 148, Mismatches: 4, Indels: 10
0.91 0.02 0.06
Matches are distributed among these distances:
81 54 0.36
83 1 0.01
88 20 0.14
89 73 0.49
ACGTcount: A:0.27, C:0.02, G:0.26, T:0.45
Consensus pattern (87 bp):
GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGGGTT
AGGGGTTAGTGATTCGGGTCGA
Found at i:26776544 original size:82 final size:82
Alignment explanation
Indices: 26776447--26776677 Score: 246
Period size: 82 Copynumber: 2.8 Consensus size: 82
26776437 ATGCTTAGAT
* * * * * *
26776447 CTTTAGCGGCATTTTTGAAAAATCGCCGCGAATGCCCGGGGCTTTAGCGACGTTTTTCAAGAAGC
1 CTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGGGGCTTTAACGACGTTTTTCAAGAAGC
* *
26776512 GTCGCTAATGGTCGGGG
66 GTCACTAATGCTCGGGG
* * * * ** * *
26776529 CTTTAGTGGCGTTTTTCAAGAAGCGCCGCTAATGCTCGTGCCTTTAACGGTGTATTTCAAGATGC
1 CTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGGGGCTTTAACGACGTTTTTCAAGAAGC
*
26776594 GACACTAATGCTCGGGG
66 GTCACTAATGCTCGGGG
* * * * * * *
26776611 CTTTACCGGCGTTTTCCAAAAAGCGCCGCTAATGATCGGGGCTTTACCGACATTTTCCAAAAAGC
1 CTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGGGGCTTTAACGACGTTTTTCAAGAAGC
26776676 GT
66 GT
26776678 TTTTGAAAAA
Statistics
Matches: 116, Mismatches: 33, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
82 116 1.00
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.28
Consensus pattern (82 bp):
CTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGGGGCTTTAACGACGTTTTTCAAGAAGC
GTCACTAATGCTCGGGG
Found at i:26776657 original size:41 final size:41
Alignment explanation
Indices: 26776423--26776676 Score: 195
Period size: 41 Copynumber: 6.2 Consensus size: 41
26776413 GCATTTTTAA
* ** ** * * **
26776423 AAAAAGTGCCGCTAATGCTTAGATCTTTAGCGGCATTTTTG
1 AAAAAGCGCCGCTAATGCTCGGGGCTTTACCGGCGTTTTCC
* * * * * *
26776464 AAAAATCGCCGCGAATGCCCGGGGCTTTAGCGACGTTTTTC
1 AAAAAGCGCCGCTAATGCTCGGGGCTTTACCGGCGTTTTCC
* * * ** *
26776505 AAGAAGCGTCGCTAATGGTCGGGGCTTTAGTGGCGTTTTTC
1 AAAAAGCGCCGCTAATGCTCGGGGCTTTACCGGCGTTTTCC
* * * * *
26776546 AAGAAGCGCCGCTAATGCTCGTGCCTTTAACGGTGTATTT-C
1 AAAAAGCGCCGCTAATGCTCGGGGCTTTACCGGCGT-TTTCC
* * * *
26776587 AAGATGCGACACTAATGCTCGGGGCTTTACCGGCGTTTTCC
1 AAAAAGCGCCGCTAATGCTCGGGGCTTTACCGGCGTTTTCC
* * *
26776628 AAAAAGCGCCGCTAATGATCGGGGCTTTACCGACATTTTCC
1 AAAAAGCGCCGCTAATGCTCGGGGCTTTACCGGCGTTTTCC
26776669 AAAAAGCG
1 AAAAAGCG
26776677 TTTTTGAAAA
Statistics
Matches: 171, Mismatches: 40, Indels: 4
0.80 0.19 0.02
Matches are distributed among these distances:
40 3 0.02
41 165 0.96
42 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (41 bp):
AAAAAGCGCCGCTAATGCTCGGGGCTTTACCGGCGTTTTCC
Found at i:26777129 original size:14 final size:15
Alignment explanation
Indices: 26777100--26777132 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
26777090 AAGGTTTATA
26777100 GATTATGGAGTTAGG
1 GATTATGGAGTTAGG
26777115 GATTATGGA-TTAGG
1 GATTATGGAGTTAGG
26777129 GATT
1 GATT
26777133 CTAATTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.27, C:0.00, G:0.36, T:0.36
Consensus pattern (15 bp):
GATTATGGAGTTAGG
Found at i:26777216 original size:21 final size:21
Alignment explanation
Indices: 26777165--26777206 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
26777155 AGGTTTATGA
*
26777165 GTTAG-GGATTAAGGGTTAGGG
1 GTTAGAGG-TTAAGAGTTAGGG
26777186 GTTAGAGGTTAAGAGTTAGGG
1 GTTAGAGGTTAAGAGTTAGGG
26777207 ATTTAAGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.26, C:0.00, G:0.45, T:0.29
Consensus pattern (21 bp):
GTTAGAGGTTAAGAGTTAGGG
Found at i:26777405 original size:14 final size:15
Alignment explanation
Indices: 26777373--26777415 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 15
26777363 TATTAAATAA
*
26777373 GGTTTAGGGGTTAAT
1 GGTTTAGGGGTTAAG
*
26777388 GG-TTAGGGGTTAGG
1 GGTTTAGGGGTTAAG
26777402 GGTTTA-GGGTTAAG
1 GGTTTAGGGGTTAAG
26777416 AGTTAGTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 19 0.79
15 5 0.21
ACGTcount: A:0.19, C:0.00, G:0.47, T:0.35
Consensus pattern (15 bp):
GGTTTAGGGGTTAAG
Found at i:26778076 original size:22 final size:22
Alignment explanation
Indices: 26778051--26778096 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
26778041 GGACAAGACC
26778051 AAAATATAAGAAA-AAAATAAAA
1 AAAATATAA-AAAGAAAATAAAA
*
26778073 AAAATATAAAAAGGAAATAAAA
1 AAAATATAAAAAGAAAATAAAA
26778095 AA
1 AA
26778097 CTAAAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 3 0.14
22 19 0.86
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (22 bp):
AAAATATAAAAAGAAAATAAAA
Found at i:26778127 original size:21 final size:21
Alignment explanation
Indices: 26778103--26778169 Score: 59
Period size: 20 Copynumber: 3.2 Consensus size: 21
26778093 AAAACTAAAA
26778103 TTTATAATTTTA-TCAAAAACT
1 TTTATAATTTTACT-AAAAACT
* *
26778124 TTTA-AATATTACTTAAAACT
1 TTTATAATTTTACTAAAAACT
*
26778144 TTAATAATTATTTACTAAAAA-T
1 TTTATAA-T-TTTACTAAAAACT
26778166 TTTA
1 TTTA
26778170 ATGAAAATAC
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
20 15 0.42
21 7 0.19
22 5 0.14
23 9 0.25
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (21 bp):
TTTATAATTTTACTAAAAACT
Found at i:26778164 original size:23 final size:22
Alignment explanation
Indices: 26778117--26778171 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
26778107 TAATTTTATC
26778117 AAAAACTTT--TAAATATTACT
1 AAAAACTTTAATAAATATTACT
* *
26778137 TAAAACTTTAATAATTATTTACT
1 AAAAACTTTAATAAATA-TTACT
*
26778160 AAAAATTTTAAT
1 AAAAACTTTAAT
26778172 GAAAATACAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
20 8 0.29
22 5 0.18
23 15 0.54
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (22 bp):
AAAAACTTTAATAAATATTACT
Found at i:26779665 original size:19 final size:17
Alignment explanation
Indices: 26779619--26779663 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
26779609 GATCTTTAAG
26779619 TTGGTTATATTT-TTTT
1 TTGGTTATATTTATTTT
26779635 TT-G-TATAGTTTAATTTT
1 TTGGTTATA-TTT-ATTTT
26779652 TTGGTTATATTT
1 TTGGTTATATTT
26779664 TAGTTGTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
14 4 0.17
15 4 0.17
16 2 0.08
17 6 0.25
18 4 0.17
19 4 0.17
ACGTcount: A:0.18, C:0.00, G:0.13, T:0.69
Consensus pattern (17 bp):
TTGGTTATATTTATTTT
Found at i:26779676 original size:32 final size:33
Alignment explanation
Indices: 26779619--26779681 Score: 101
Period size: 32 Copynumber: 1.9 Consensus size: 33
26779609 GATCTTTAAG
**
26779619 TTGGTTATATTTTTTTTTGTATAGTTTAATTTT
1 TTGGTTATATTTTTAGTTGTATAGTTTAATTTT
26779652 TTGGTTATA-TTTTAGTTGTATAGTTTAATT
1 TTGGTTATATTTTTAGTTGTATAGTTTAATT
26779682 ATTATTTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 19 0.68
33 9 0.32
ACGTcount: A:0.21, C:0.00, G:0.14, T:0.65
Consensus pattern (33 bp):
TTGGTTATATTTTTAGTTGTATAGTTTAATTTT
Found at i:26780621 original size:18 final size:16
Alignment explanation
Indices: 26780579--26780611 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
26780569 AAACTTGTAG
26780579 AAATAAGTTTGAAGAT
1 AAATAAGTTTGAAGAT
26780595 AAATAAGTTTGAAGAT
1 AAATAAGTTTGAAGAT
26780611 A
1 A
26780612 TAATTGAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.18, T:0.30
Consensus pattern (16 bp):
AAATAAGTTTGAAGAT
Found at i:26780687 original size:9 final size:9
Alignment explanation
Indices: 26780675--26781233 Score: 161
Period size: 9 Copynumber: 62.8 Consensus size: 9
26780665 TTAAAATAGT
26780675 TAACTTACA
1 TAACTTACA
26780684 TAACTTA-A
1 TAACTTACA
26780692 TTAA-TTA-A
1 -TAACTTACA
* *
26780700 T-ATTATATA
1 TAACT-TACA
26780709 TAACTTACA
1 TAACTTACA
26780718 TAACTTAC-
1 TAACTTACA
26780726 -AACTTACA
1 TAACTTACA
26780734 TAACTTACA
1 TAACTTACA
*
26780743 TTAATATTAAACA
1 -TAA-CTT--ACA
*
26780756 TAAATTACA
1 TAACTTACA
26780765 TAACTTACA
1 TAACTTACA
*
26780774 TTAATATTATACA
1 -T-A-ACT-TACA
*
26780787 TAAATTACA
1 TAACTTACA
26780796 TAACTTA-A
1 TAACTTACA
26780804 TTAA-TTA-A
1 -TAACTTACA
*
26780812 T-ATTATACA
1 TAACT-TACA
26780821 TAACTTACA
1 TAACTTACA
*
26780830 TTAATATTATACA
1 -T-A-ACT-TACA
*
26780843 TAAATTACA
1 TAACTTACA
26780852 TAACTTA-A
1 TAACTTACA
26780860 TTAA-TTA-A
1 -TAACTTACA
*
26780868 T-ATTATACA
1 TAACT-TACA
26780877 TAACTTACA
1 TAACTTACA
*
26780886 TTAATATTATACA
1 -T-A-ACT-TACA
*
26780899 TAATTTACA
1 TAACTTACA
26780908 TAACTTACA
1 TAACTTACA
*
26780917 TTAATATTATACA
1 -T-A-ACT-TACA
*
26780930 TAAATTACA
1 TAACTTACA
26780939 TAACTTA-A
1 TAACTTACA
26780947 TTAA-TTA-A
1 -TAACTTACA
**
26780955 TATTTTACA
1 TAACTTACA
26780964 TAACTTACA
1 TAACTTACA
*
26780973 TTAATATTATACA
1 -T-A-ACT-TACA
*
26780986 TAAATTACA
1 TAACTTACA
**
26780995 TAACTTAGT
1 TAACTTACA
26781004 TAA-TTA-A
1 TAACTTACA
*
26781011 T-ATTATACA
1 TAACT-TACA
*
26781020 CAACTTACA
1 TAACTTACA
26781029 TAACTTAC-
1 TAACTTACA
26781037 -AACTTACA
1 TAACTTACA
26781045 TAACTTACA
1 TAACTTACA
***
26781054 TTTTTTTA-A
1 -TAACTTACA
* *
26781063 TTA-TT-CG
1 TAACTTACA
*
26781070 TAAATTACA
1 TAACTTACA
*
26781079 TAACTTACT
1 TAACTTACA
* *
26781088 TAATTTTCA
1 TAACTTACA
*
26781097 TAA--TAAA
1 TAACTTACA
26781104 TAACTTACA
1 TAACTTACA
26781113 TAACTTACA
1 TAACTTACA
26781122 TAA--TACA
1 TAACTTACA
*
26781129 TAACTTATA
1 TAACTTACA
*
26781138 TGACTTACA
1 TAACTTACA
26781147 TAACTTACA
1 TAACTTACA
*
26781156 T-A---GCA
1 TAACTTACA
* *
26781161 TAATTTTCA
1 TAACTTACA
26781170 TAA--TACA
1 TAACTTACA
*
26781177 CAACTTACA
1 TAACTTACA
* **
26781186 TAATTTGGA
1 TAACTTACA
*
26781195 TAA--TAAA
1 TAACTTACA
26781202 TAACTTACA
1 TAACTTACA
26781211 TAA--TACA
1 TAACTTACA
26781218 TAACTTACA
1 TAACTTACA
*
26781227 TAGCTTA
1 TAACTTA
26781234 ATTATACTTA
Statistics
Matches: 422, Mismatches: 60, Indels: 136
0.68 0.10 0.22
Matches are distributed among these distances:
5 3 0.01
6 5 0.01
7 57 0.14
8 39 0.09
9 231 0.55
10 31 0.07
11 15 0.04
12 18 0.04
13 23 0.05
ACGTcount: A:0.46, C:0.14, G:0.01, T:0.39
Consensus pattern (9 bp):
TAACTTACA
Found at i:26780731 original size:16 final size:16
Alignment explanation
Indices: 26780710--26780742 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
26780700 TATTATATAT
26780710 AACTTACATAACTTAC
1 AACTTACATAACTTAC
26780726 AACTTACATAACTTAC
1 AACTTACATAACTTAC
26780742 A
1 A
26780743 TTAATATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (16 bp):
AACTTACATAACTTAC
Found at i:26780763 original size:22 final size:22
Alignment explanation
Indices: 26780731--26780852 Score: 71
Period size: 22 Copynumber: 5.6 Consensus size: 22
26780721 CTTACAACTT
*
26780731 ACATAACTTACATTAATATTAA
1 ACATAAATTACATTAATATTAA
*
26780753 ACATAAATTACA-TAA-CTT--
1 ACATAAATTACATTAATATTAA
26780771 ACATTAATATTATACA-TAA-ATTACA
1 ACA-TAA-A-T-TACATTAATATTA-A
* *
26780796 TA-ACTTAATTA-ATTAATATTAT
1 -ACA-TAAATTACATTAATATTAA
* *
26780818 ACATAACTTACATTAATATTAT
1 ACATAAATTACATTAATATTAA
26780840 ACATAAATTACAT
1 ACATAAATTACAT
26780853 AACTTAATTA
Statistics
Matches: 79, Mismatches: 9, Indels: 24
0.71 0.08 0.21
Matches are distributed among these distances:
18 3 0.04
19 3 0.04
20 3 0.04
21 11 0.14
22 49 0.62
23 5 0.06
24 1 0.01
25 3 0.04
26 1 0.01
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.39
Consensus pattern (22 bp):
ACATAAATTACATTAATATTAA
Found at i:26780773 original size:56 final size:56
Alignment explanation
Indices: 26780708--26781001 Score: 225
Period size: 56 Copynumber: 5.1 Consensus size: 56
26780698 AATATTATAT
* *
26780708 ATAACTTACATAACTTACAACTTACATAACTTACATTAATATTAAACATAAATTAC
1 ATAACTTACATAACTTACAATTTACATAACTTACATTAATATTATACATAAATTAC
* * * *
26780764 ATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAACTTAC
1 ATAACTTACA-T-A-ACT-TAC--AATTTACATAACTT-A--CATTAATATTATACATAAATTAC
* * * * *
26780829 ATTAATATTATACATAAATTAC-A-TAACTTAA-TTA-ATTAATATTATACATAACTTAC
1 A-T-A-ACT-TACATAACTTACAATTTACATAACTTACATTAATATTATACATAAATTAC
* *
26780885 ATTAA--TA-TTATAC--ATAATTTACATAACTTACATTAATATTATACATAAATTAC
1 A-TAACTTACATA-ACTTACAATTTACATAACTTACATTAATATTATACATAAATTAC
26780938 ATAACTTA-ATTAA-TTA-ATATTTTACATAACTTACATTAATATTATACATAAATTAC
1 ATAACTTACA-TAACTTACA-A-TTTACATAACTTACATTAATATTATACATAAATTAC
26780994 ATAACTTA
1 ATAACTTA
26781002 GTTAATTAAT
Statistics
Matches: 197, Mismatches: 16, Indels: 50
0.75 0.06 0.19
Matches are distributed among these distances:
49 1 0.01
50 3 0.02
51 9 0.05
52 6 0.03
53 22 0.11
54 5 0.03
55 5 0.03
56 79 0.40
57 1 0.01
58 1 0.01
59 3 0.02
60 5 0.03
61 6 0.03
62 14 0.07
63 1 0.01
65 24 0.12
66 3 0.02
67 2 0.01
68 3 0.02
69 4 0.02
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.40
Consensus pattern (56 bp):
ATAACTTACATAACTTACAATTTACATAACTTACATTAATATTATACATAAATTAC
Found at i:26780821 original size:87 final size:83
Alignment explanation
Indices: 26780729--26781035 Score: 359
Period size: 87 Copynumber: 3.5 Consensus size: 83
26780719 AACTTACAAC
*
26780729 TTACATAACTTACATTAATATTAAACATAAATTACATAACTTACATTAATATTATACATAAATTA
1 TTACATAACTTACATTAATATTATACATAAATTACATAACTTA-ATTAATATTATACATAAATTA
26780794 CA-TAACTTAATTAATTA-AT-AT
65 CATTAA--T-ATT-A-TACATAAT
26780815 TATACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAA
1 T-TACATAACTTACATTAATATTATACATAAATTACATAAC----TTAATTAATATTATACATAA
*
26780880 CTTACATTAATATTATACATAAT
61 ATTACATTAATATTATACATAAT
* *
26780903 TTACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTTTACATAAC
1 TTACATAACTTACATTAATATTATACATAAATTACATAAC----TTAATTAATATTATACATAAA
*
26780968 TTACATTAATATTATACATAAA
62 TTACATTAATATTATACATAAT
* * *
26780990 TTACATAACTTAGTTAATTAATATTATACACAACTTACATAACTTA
1 TTACATAACTTA---CATTAATATTATACATAAATTACATAACTTA
26781036 CAACTTACAT
Statistics
Matches: 203, Mismatches: 7, Indels: 22
0.88 0.03 0.09
Matches are distributed among these distances:
86 6 0.03
87 137 0.67
88 6 0.03
89 1 0.00
90 47 0.23
91 6 0.03
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.40
Consensus pattern (83 bp):
TTACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATATTATACATAAATTAC
ATTAATATTATACATAAT
Found at i:26780889 original size:143 final size:143
Alignment explanation
Indices: 26780730--26781029 Score: 555
Period size: 143 Copynumber: 2.1 Consensus size: 143
26780720 ACTTACAACT
26780730 TACATAACTTACATTAATATTAAACATAAATTACATAACTTACATTAATATTATACATAAATTAC
1 TACATAACTTACATTAATATTAAACATAAATTACATAACTTACATTAATATTATACATAAATTAC
26780795 ATAACTTAATTAATTAATATTATACATAACTTACATTAATATTATACATAAATTACATAACTTAA
66 ATAACTTAATTAATTAATATTATACATAACTTACATTAATATTATACATAAATTACATAACTTAA
26780860 TTAATTAATATTA
131 TTAATTAATATTA
* *
26780873 TACATAACTTACATTAATATTATACATAATTTACATAACTTACATTAATATTATACATAAATTAC
1 TACATAACTTACATTAATATTAAACATAAATTACATAACTTACATTAATATTATACATAAATTAC
* *
26780938 ATAACTTAATTAATTAATATTTTACATAACTTACATTAATATTATACATAAATTACATAACTTAG
66 ATAACTTAATTAATTAATATTATACATAACTTACATTAATATTATACATAAATTACATAACTTAA
26781003 TTAATTAATATTA
131 TTAATTAATATTA
*
26781016 TACACAACTTACAT
1 TACATAACTTACAT
26781030 AACTTACAAC
Statistics
Matches: 152, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
143 152 1.00
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.40
Consensus pattern (143 bp):
TACATAACTTACATTAATATTAAACATAAATTACATAACTTACATTAATATTATACATAAATTAC
ATAACTTAATTAATTAATATTATACATAACTTACATTAATATTATACATAAATTACATAACTTAA
TTAATTAATATTA
Found at i:26780891 original size:22 final size:22
Alignment explanation
Indices: 26780863--26780995 Score: 93
Period size: 22 Copynumber: 6.1 Consensus size: 22
26780853 AACTTAATTA
26780863 ATTAATATTATACATAACTTAC
1 ATTAATATTATACATAACTTAC
*
26780885 ATTAATATTATACATAATTTAC
1 ATTAATATTATACATAACTTAC
* *
26780907 A-T-A-ACT-TACATTAATATTATAC
1 ATTAATATTATACA-T-A-ACT-TAC
*
26780929 A-TAA-A-T-TACATAACTTAATTA
1 ATTAATATTATACATAACTT-A--C
*
26780950 ATTAATATTTTACATAACTTAC
1 ATTAATATTATACATAACTTAC
*
26780972 ATTAATATTATACATAAATTAC
1 ATTAATATTATACATAACTTAC
26780994 AT
1 AT
26780996 AACTTAGTTA
Statistics
Matches: 92, Mismatches: 7, Indels: 24
0.75 0.06 0.20
Matches are distributed among these distances:
18 5 0.05
19 6 0.07
20 3 0.03
21 6 0.07
22 57 0.62
23 3 0.03
24 2 0.02
25 10 0.11
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (22 bp):
ATTAATATTATACATAACTTAC
Found at i:26780964 original size:34 final size:31
Alignment explanation
Indices: 26780729--26781035 Score: 317
Period size: 31 Copynumber: 10.4 Consensus size: 31
26780719 AACTTACAAC
* *
26780729 TTACATAACTTACATTAATATTAAACATAAA
1 TTACATAACTTAAATTAATATTATACATAAA
*
26780760 TTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTAAATTAATATTATACATAAA
* *
26780791 TTACATAACTT-AATT-A-ATTA-ATAT-TA
1 TTACATAACTTAAATTAATATTATACATAAA
*
26780817 -TACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTAAATTAATATTATACATAAA
* *
26780847 TTACATAACTT-AATT-A-ATTA-ATAT-TA
1 TTACATAACTTAAATTAATATTATACATAAA
* *
26780873 -TACATAACTTACATTAATATTATACATAAT
1 TTACATAACTTAAATTAATATTATACATAAA
*
26780903 TTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTAAATTAATATTATACATAAA
**
26780934 TTACATAACTT-AATT-A-A-T-TA-ATATT
1 TTACATAACTTAAATTAATATTATACATAAA
*
26780959 TTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTAAATTAATATTATACATAAA
* *
26780990 TTACATAACTTAGTTAATTAATATTATACACAAC
1 TTACATAACTTA---AATTAATATTATACATAAA
26781024 TTACATAACTTA
1 TTACATAACTTA
26781036 CAACTTACAT
Statistics
Matches: 231, Mismatches: 24, Indels: 39
0.79 0.08 0.13
Matches are distributed among these distances:
25 34 0.15
26 13 0.06
27 10 0.04
28 18 0.08
29 10 0.04
30 12 0.05
31 106 0.46
34 28 0.12
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.40
Consensus pattern (31 bp):
TTACATAACTTAAATTAATATTATACATAAA
Found at i:26781007 original size:56 final size:55
Alignment explanation
Indices: 26780807--26781029 Score: 237
Period size: 56 Copynumber: 4.0 Consensus size: 55
26780797 AACTTAATTA
* ** *
26780807 ATTAATATTATACATAACTTACATTAA--TATT-A-TACATAAATTACATAACTTAATTA
1 ATTAATATTATACATAAATTACA-TAACTTATTAATTA-ATATTTTACATAACTT-A--C
* *
26780863 ATTAATATTATACATAACTTACATTAA--TATT-A-TACATAATTTACATAACTTAC
1 ATTAATATTATACATAAATTACA-TAACTTATTAATTA-ATATTTTACATAACTTAC
26780916 ATTAATATTATACATAAATTACATAACTTAATTAATTAATATTTTACATAACTTAC
1 ATTAATATTATACATAAATTACATAACTT-ATTAATTAATATTTTACATAACTTAC
* *
26780972 ATTAATATTATACATAAATTACATAACTTAGTTAATTAATATTATACACAACTTAC
1 ATTAATATTATACATAAATTACATAACTTA-TTAATTAATATTTTACATAACTTAC
26781028 AT
1 AT
26781030 AACTTACAAC
Statistics
Matches: 155, Mismatches: 6, Indels: 12
0.90 0.03 0.07
Matches are distributed among these distances:
52 3 0.02
53 22 0.14
54 1 0.01
55 5 0.03
56 122 0.79
57 2 0.01
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (55 bp):
ATTAATATTATACATAAATTACATAACTTATTAATTAATATTTTACATAACTTAC
Found at i:26781040 original size:16 final size:16
Alignment explanation
Indices: 26781019--26781053 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
26781009 AATATTATAC
26781019 ACAACTTACATAACTT
1 ACAACTTACATAACTT
26781035 ACAACTTACATAACTT
1 ACAACTTACATAACTT
26781051 ACA
1 ACA
26781054 TTTTTTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.29
Consensus pattern (16 bp):
ACAACTTACATAACTT
Found at i:26781108 original size:25 final size:25
Alignment explanation
Indices: 26781078--26781220 Score: 100
Period size: 25 Copynumber: 5.9 Consensus size: 25
26781068 CGTAAATTAC
* * *
26781078 ATAACTTACTTAATTTTCATAATAA
1 ATAACTTACATAACTTACATAATAA
*
26781103 ATAACTTACATAACTTACATAATAC
1 ATAACTTACATAACTTACATAATAA
* *
26781128 ATAACTTATATGACTTACATAACT--
1 ATAACTTACATAACTTACATAA-TAA
* * * *
26781152 -T-ACATAGCATAATTTTCATAATAC
1 ATAACTTA-CATAACTTACATAATAA
* * **
26781176 ACAACTTACATAATTTGGATAATAA
1 ATAACTTACATAACTTACATAATAA
26781201 ATAACTTACATAA--TACATAA
1 ATAACTTACATAACTTACATAA
26781221 CTTACATAGC
Statistics
Matches: 93, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
22 5 0.05
23 16 0.17
25 67 0.72
26 5 0.05
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (25 bp):
ATAACTTACATAACTTACATAATAA
Found at i:26781112 original size:34 final size:34
Alignment explanation
Indices: 26781074--26781188 Score: 99
Period size: 34 Copynumber: 3.2 Consensus size: 34
26781064 TATTCGTAAA
26781074 TTACATAACTTACTTAATTTTCATAATAAATAAC
1 TTACATAACTTACTTAATTTTCATAATAAATAAC
* * * *
26781108 TTACATAACTTACATAA--TACATAACTTATATGAC
1 TTACATAACTTACTTAATTTTCATAA--TAAATAAC
* *
26781142 TTACATAACTTACATAGCATAATTTTCATAATACACAAC
1 TTACATAACTTAC-T----TAATTTTCATAATAAATAAC
26781181 TTACATAA
1 TTACATAA
26781189 TTTGGATAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
32 6 0.10
34 35 0.56
39 16 0.25
41 6 0.10
ACGTcount: A:0.44, C:0.17, G:0.02, T:0.37
Consensus pattern (34 bp):
TTACATAACTTACTTAATTTTCATAATAAATAAC
Found at i:26781128 original size:16 final size:16
Alignment explanation
Indices: 26781109--26781228 Score: 78
Period size: 16 Copynumber: 7.9 Consensus size: 16
26781099 ATAAATAACT
26781109 TACATAACTTACATAA
1 TACATAACTTACATAA
* *
26781125 TACATAACTTATATGACT
1 TACATAACTTACAT-A-A
26781143 TACATAACTTACAT-A
1 TACATAACTTACATAA
* * *
26781158 -GCATAATTTTCATAA
1 TACATAACTTACATAA
*
26781173 TACACAACTTAC---A
1 TACATAACTTACATAA
**
26781186 TA-AT---TTGGATAA
1 TACATAACTTACATAA
*
26781198 TAAATAACTTACATAA
1 TACATAACTTACATAA
26781214 TACATAACTTACATA
1 TACATAACTTACATA
26781229 GCTTAATTAT
Statistics
Matches: 76, Mismatches: 17, Indels: 22
0.66 0.15 0.19
Matches are distributed among these distances:
9 2 0.03
12 4 0.05
13 5 0.07
14 10 0.13
15 1 0.01
16 40 0.53
17 1 0.01
18 13 0.17
ACGTcount: A:0.46, C:0.17, G:0.03, T:0.34
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:26781144 original size:143 final size:142
Alignment explanation
Indices: 26780730--26781092 Score: 520
Period size: 143 Copynumber: 2.6 Consensus size: 142
26780720 ACTTACAACT
* * * *
26780730 TACATAACTTACATTAATATTAAACATAAATTACATAACTTACATTAATATTATACATAAATTAC
1 TACACAACTTACATTAATACTATACA-AACTTACATAACTTACATTAATATTATACATAAATTAC
26780795 ATAACTTAATTAATTAATATTATACATAACTTACATTAATATTATACATAAATTACATAACTTAA
65 ATAACTTAATTAATTAATATTATACATAACTTACATTAATATTATACATAAATTACATAACTTAA
26780860 TTAATTAATATTA
130 TTAATTAATATTA
* * *
26780873 TACATAACTTACATTAATATTATACATAATTTACATAACTTACATTAATATTATACATAAATTAC
1 TACACAACTTACATTAATACTATACA-AACTTACATAACTTACATTAATATTATACATAAATTAC
* *
26780938 ATAACTTAATTAATTAATATTTTACATAACTTACATTAATATTATACATAAATTACATAACTTAG
65 ATAACTTAATTAATTAATATTATACATAACTTACATTAATATTATACATAAATTACATAACTTAA
26781003 TTAATTAATATTA
130 TTAATTAATATTA
** * *
26781016 TACACAACTTACA-T-A-ACT-TAC-AACTTACATAACTTACATTTTTTTAATTATTCGTAAATT
1 TACACAACTTACATTAATACTATACAAACTTACATAACTTACA--TTAAT-ATTATACATAAATT
*
26781076 ACATAACTTACTTAATT
63 ACATAACTTAATTAATT
26781093 TTCATAATAA
Statistics
Matches: 205, Mismatches: 12, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
137 16 0.08
139 6 0.03
140 30 0.15
141 1 0.00
142 1 0.00
143 151 0.74
ACGTcount: A:0.46, C:0.13, G:0.01, T:0.41
Consensus pattern (142 bp):
TACACAACTTACATTAATACTATACAAACTTACATAACTTACATTAATATTATACATAAATTACA
TAACTTAATTAATTAATATTATACATAACTTACATTAATATTATACATAAATTACATAACTTAAT
TAATTAATATTA
Found at i:26786757 original size:66 final size:65
Alignment explanation
Indices: 26786651--26786814 Score: 204
Period size: 66 Copynumber: 2.5 Consensus size: 65
26786641 AGCAAATTAC
* * * * *
26786651 ACAACTTAAAGCGGAGGCAACATCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCTAG
1 ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAG-TATGAAGAACTCCAG
*
26786715 CT
65 -A
*
26786717 ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAGTATGAAGAACTCCAGA
1 ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAGA
* **
26786782 AGCAACTTAAAGCAGATGCGGCAGAAAGAGAAG
1 A-CAACTTAAAGCAGATGCAGCAGCGAGAGAAG
26786815 TAGAGGTGGC
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
65 1 0.01
66 81 0.94
67 4 0.05
ACGTcount: A:0.43, C:0.17, G:0.26, T:0.14
Consensus pattern (65 bp):
ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAGA
Found at i:26786832 original size:21 final size:21
Alignment explanation
Indices: 26786808--26786895 Score: 97
Period size: 21 Copynumber: 4.2 Consensus size: 21
26786798 TGCGGCAGAA
26786808 AGAGAAGTAGAGG-TGGCAGCG
1 AGAGAAGTAGAGGCT-GCAGCG
*
26786829 AGAGAAGTACAGGCTGCAGCG
1 AGAGAAGTAGAGGCTGCAGCG
* * * **
26786850 AGGGAAGCAAAGGCTATAGCG
1 AGAGAAGTAGAGGCTGCAGCG
*
26786871 AGGGAAGTAGAGGCTGCAGCG
1 AGAGAAGTAGAGGCTGCAGCG
26786892 AGAG
1 AGAG
26786896 CAGCGTCAAA
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
21 54 0.98
22 1 0.02
ACGTcount: A:0.34, C:0.14, G:0.43, T:0.09
Consensus pattern (21 bp):
AGAGAAGTAGAGGCTGCAGCG
Found at i:26787294 original size:43 final size:43
Alignment explanation
Indices: 26787247--26787494 Score: 217
Period size: 43 Copynumber: 5.7 Consensus size: 43
26787237 AGGTGTTGGC
* * * * * *
26787247 CTTTAGTGGCGTTTTTGGTAAAAGCGTCGCTAAATATAAGGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCAGGGT
* * * *
26787290 CTTTAACGGCGTTTGTGGAAAAAGCGCCACTAAAGATCATGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCAGGGT
* * * *
26787333 CTTTAGCAGCGTTTGTGGGGAAAAGTGCCGCTAAAGATTAGGTT
1 CTTTAGCGGCGTTTGT-GGGAAAAGCGCCGCTAAAGATCAGGGT
** *** *
26787377 CTTTAATGGCGTTTGTGGTCGAAGCGCCGCTAGAGATCAGGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCAGGGT
* * * ****
26787420 CTTTTGCGGCGTTTGTGGGAAAAGCACCGCTAAAGACCCTAAT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCAGGGT
** *
26787463 CTTTAGCGGCGTTTGTGCTAGAAGCGCCGCTA
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTA
26787495 TAGACCAACA
Statistics
Matches: 159, Mismatches: 45, Indels: 2
0.77 0.22 0.01
Matches are distributed among these distances:
43 125 0.79
44 34 0.21
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCAGGGT
Found at i:26787380 original size:87 final size:86
Alignment explanation
Indices: 26787222--26787455 Score: 254
Period size: 87 Copynumber: 2.7 Consensus size: 86
26787212 CGTTTTTTTT
* ** * * * * * *
26787222 GAAAAA-CGCCACTAAAGGTGTTGGCCTTTAGTGGCGTTTTTGGTAAAAGCGTCGCTAAATATAA
1 GAAAAAGCGCCACTAAAGATCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATAA
26787286 GGGTCTTTAACGGCGTTTGTG
66 GGGTCTTTAACGGCGTTTGTG
* * *
26787307 GAAAAAGCGCCACTAAAGATCATGGTCTTTAGCAGCGTTTGTGGGGAAAAGTGCCGCTAAAGATT
1 GAAAAAGCGCCACTAAAGATCATGGTCTTTAGCGGCGTTTGT-GGGAAAAGCGCCGCTAAAGATA
* *
26787372 AGGTTCTTTAATGGCGTTTGTG
65 AGGGTCTTTAACGGCGTTTGTG
*** * * * * *
26787394 GTCGAAGCGCCGCTAGAGATCAGGGTCTTTTGCGGCGTTTGTGGGAAAAGCACCGCTAAAGA
1 GAAAAAGCGCCACTAAAGATCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGA
26787456 CCCTAATCTT
Statistics
Matches: 123, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
85 6 0.05
86 46 0.37
87 71 0.58
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (86 bp):
GAAAAAGCGCCACTAAAGATCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATAA
GGGTCTTTAACGGCGTTTGTG
Found at i:26787487 original size:86 final size:86
Alignment explanation
Indices: 26787289--26787494 Score: 236
Period size: 87 Copynumber: 2.4 Consensus size: 86
26787279 AATATAAGGG
* * * *
26787289 TCTTTAACGGCGTTTGTGGAAAAAGCGCCACTAAAGATCATGGTCTTTAGCAGCGTTTGTGGGGA
1 TCTTTAACGGCGTTTGTGGTAGAAGCGCCGCTAAAGATCAGGGTCTTTAGCAGCGTTTGTGGGGA
** * *
26787354 AAAGTGCCGCTAAAGATTAGGT
66 AAAGCACCGCTAAAGACTA-GA
* * * * *
26787376 TCTTTAATGGCGTTTGTGGTCGAAGCGCCGCTAGAGATCAGGGTCTTTTGCGGCGTTTGT-GGGA
1 TCTTTAACGGCGTTTGTGGTAGAAGCGCCGCTAAAGATCAGGGTCTTTAGCAGCGTTTGTGGGGA
26787440 AAAGCACCGCTAAAGACCCTA-A
66 AAAGCACCGCTAAAGA--CTAGA
* *
26787462 TCTTTAGCGGCGTTTGTGCTAGAAGCGCCGCTA
1 TCTTTAACGGCGTTTGTGGTAGAAGCGCCGCTA
26787495 TAGACCAACA
Statistics
Matches: 100, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
86 47 0.47
87 51 0.51
88 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (86 bp):
TCTTTAACGGCGTTTGTGGTAGAAGCGCCGCTAAAGATCAGGGTCTTTAGCAGCGTTTGTGGGGA
AAAGCACCGCTAAAGACTAGA
Found at i:26789220 original size:20 final size:20
Alignment explanation
Indices: 26789176--26789220 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
26789166 TAGAATTTTT
*
26789176 TTTTGAAATTTTTATAAATA
1 TTTTGAAATTTTGATAAATA
*
26789196 ATTTGAAATTTTGA-AAACTA
1 TTTTGAAATTTTGATAAA-TA
26789216 TTTTG
1 TTTTG
26789221 TATTTTTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.51
Consensus pattern (20 bp):
TTTTGAAATTTTGATAAATA
Found at i:26790222 original size:26 final size:27
Alignment explanation
Indices: 26790188--26790250 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
26790178 GAATTTTCTT
* * *
26790188 AAAATTTTATC-AGGGGTAAAATCGTA
1 AAAATTTTACCGAGGAGTAAAATAGTA
* *
26790214 AAAATTTTACCGAGTAGTAAAATAGTC
1 AAAATTTTACCGAGGAGTAAAATAGTA
26790241 AAAATTTTAC
1 AAAATTTTAC
26790251 TAGAGTAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
26 10 0.32
27 21 0.68
ACGTcount: A:0.44, C:0.10, G:0.14, T:0.32
Consensus pattern (27 bp):
AAAATTTTACCGAGGAGTAAAATAGTA
Found at i:26790257 original size:28 final size:27
Alignment explanation
Indices: 26790203--26790257 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
26790193 TTTATCAGGG
* *
26790203 GTAAAATCGTAAAAATTTTACCGAGTA
1 GTAAAATAGTAAAAATTTTACAGAGTA
*
26790230 GTAAAATAGTCAAAATTTTACTAGAGTA
1 GTAAAATAGTAAAAATTTTAC-AGAGTA
26790258 AAATTTATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 19 0.79
28 5 0.21
ACGTcount: A:0.45, C:0.09, G:0.15, T:0.31
Consensus pattern (27 bp):
GTAAAATAGTAAAAATTTTACAGAGTA
Found at i:26804681 original size:27 final size:27
Alignment explanation
Indices: 26804658--26804724 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
26804648 ACATACTCTA
26804658 AATGGATTGCCTTTTTGGTGTACTATG
1 AATGGATTGCCTTTTTGGTGTACTATG
* *
26804685 AATGGATTGCCTTTTTTGTGTAGTATG
1 AATGGATTGCCTTTTTGGTGTACTATG
26804712 AATGGATTGCCTT
1 AATGGATTGCCTT
26804725 ATGGCGAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.19, C:0.10, G:0.25, T:0.45
Consensus pattern (27 bp):
AATGGATTGCCTTTTTGGTGTACTATG
Found at i:26813587 original size:21 final size:21
Alignment explanation
Indices: 26813535--26813589 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
26813525 ACCAGAGTAG
***
26813535 ACATGGTCGTGTGGCTAATTC
1 ACATGGTCGTGTGGCTAAGAA
**
26813556 ACATGCCCGTGTGGCTAAGAA
1 ACATGGTCGTGTGGCTAAGAA
26813577 ACATGGTCGTGTG
1 ACATGGTCGTGTG
26813590 ACTGAGGCAC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (21 bp):
ACATGGTCGTGTGGCTAAGAA
Found at i:26819095 original size:20 final size:20
Alignment explanation
Indices: 26819070--26819110 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
26819060 ACTATTATTA
*
26819070 TAATATTCAACATTATTGCT
1 TAATATCCAACATTATTGCT
*
26819090 TAATATCCAATATTATTGCT
1 TAATATCCAACATTATTGCT
26819110 T
1 T
26819111 CGCATAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.34, C:0.15, G:0.05, T:0.46
Consensus pattern (20 bp):
TAATATCCAACATTATTGCT
Found at i:26820220 original size:20 final size:21
Alignment explanation
Indices: 26820182--26820224 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
26820172 AGAGGTCTTT
26820182 TACCAATAAATACTTTTTTTC
1 TACCAATAAATACTTTTTTTC
*
26820203 TACCAA-AAAGTATTTTTTTTC
1 TACCAATAAA-TACTTTTTTTC
26820224 T
1 T
26820225 TTCGTACTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.33, C:0.16, G:0.02, T:0.49
Consensus pattern (21 bp):
TACCAATAAATACTTTTTTTC
Found at i:26823647 original size:30 final size:31
Alignment explanation
Indices: 26823629--26823699 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 31
26823619 GCGTGTGTCT
26823629 CAGCCGTGTGTGACACAC-GGCCTGGTGACA
1 CAGCCGTGTGTGACACACGGGCCTGGTGACA
*
26823659 CAGCCGTGTGTGACACAC-GGCTTGGTGACA
1 CAGCCGTGTGTGACACACGGGCCTGGTGACA
* *
26823689 CGGTCGTGTGT
1 CAGCCGTGTGT
26823700 CCCCTGTAGC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.17, C:0.27, G:0.35, T:0.21
Consensus pattern (31 bp):
CAGCCGTGTGTGACACACGGGCCTGGTGACA
Found at i:26823656 original size:15 final size:15
Alignment explanation
Indices: 26823638--26823689 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
26823628 TCAGCCGTGT
26823638 GTGACACACGGCCTG
1 GTGACACACGGCCTG
26823653 GTGACACA--GCCGTG
1 GTGACACACGGCC-TG
*
26823667 TGTGACACACGGCTTG
1 -GTGACACACGGCCTG
26823683 GTGACAC
1 GTGACAC
26823690 GGTCGTGTGT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
13 3 0.09
14 2 0.06
15 23 0.72
16 2 0.06
17 2 0.06
ACGTcount: A:0.21, C:0.29, G:0.33, T:0.17
Consensus pattern (15 bp):
GTGACACACGGCCTG
Done.