Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 87 of 161
Found at i:27488858 original size:30 final size:31
Alignment explanation
Indices: 27488821--27488898 Score: 79
Period size: 31 Copynumber: 2.5 Consensus size: 31
27488811 ACGATTTAAA
27488821 AAAAAAAACCATTT-AACAGTCCAATGACTTT
1 AAAAAAAA-CATTTAAACAGTCCAATGACTTT
* * *
27488852 AAAAAAAACTTTTAAATAGTTCAATGAC-TT
1 AAAAAAAACATTTAAACAGTCCAATGACTTT
* *
27488882 AAATGAAAACTTTTAAA
1 AAA-AAAAACATTTAAA
27488899 TAGTTTAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
30 9 0.22
31 32 0.78
ACGTcount: A:0.51, C:0.13, G:0.06, T:0.29
Consensus pattern (31 bp):
AAAAAAAACATTTAAACAGTCCAATGACTTT
Found at i:27488877 original size:31 final size:31
Alignment explanation
Indices: 27488842--27488903 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
27488832 TTTAACAGTC
27488842 CAATGACTTTAAA-AAAAACTTTTAAATAGTT
1 CAATGAC-TTAAATAAAAACTTTTAAATAGTT
*
27488873 CAATGACTTAAATGAAAACTTTTAAATAGTT
1 CAATGACTTAAATAAAAACTTTTAAATAGTT
27488904 TAAAACTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 5 0.17
31 24 0.83
ACGTcount: A:0.47, C:0.10, G:0.08, T:0.35
Consensus pattern (31 bp):
CAATGACTTAAATAAAAACTTTTAAATAGTT
Found at i:27490445 original size:21 final size:19
Alignment explanation
Indices: 27490414--27490457 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
27490404 TTACATAATG
27490414 TAATAATATATTTAAAATAT
1 TAATAATATATTT-AAATAT
*
27490434 TAATACATATATTTAACTAT
1 TAATA-ATATATTTAAATAT
27490454 TAAT
1 TAAT
27490458 TGGTTCAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (19 bp):
TAATAATATATTTAAATAT
Found at i:27491702 original size:20 final size:19
Alignment explanation
Indices: 27491664--27491713 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
27491654 TAATAATTAA
27491664 TATATTATGT-ATTACTAT
1 TATATTATGTAATTACTAT
*
27491682 TATATTATGTAATATAGTAT
1 TATATTATGTAAT-TACTAT
* *
27491702 TAAATAATGTAA
1 TATATTATGTAA
27491714 GAATTAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 10 0.37
19 2 0.07
20 15 0.56
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (19 bp):
TATATTATGTAATTACTAT
Found at i:27508961 original size:279 final size:279
Alignment explanation
Indices: 27508415--27508974 Score: 790
Period size: 279 Copynumber: 2.0 Consensus size: 279
27508405 TGTTTTAAAG
* *
27508415 TGTATTTGATATATTATATTTTAAAATTATTTATTTAATAAAATAATTTAAAATATTAATATGAG
1 TGTATTTCATATATTATATTTTAAAATTATTTATTTAATAAAATAATTTAAAAAATTAATATGAG
** ** *
27508480 TTGGACCGGGTCGAGCTTGGACTTAATTATTATATTTTGGATCGAGTTTAAACAAATTTTTAGAC
66 TCAGACCGGGTC--GCTCAGACTTAATTATTATATTTTGGATCGAGTTTAAACAAATTTTTAAAC
* *
27508545 TCATATTCAAGCCAACACAAATCCTACCCAACGCATGATCACCTCTACCCTCACCTTTGAGCTTA
129 TCATATTCAAACCAACACAAATCCAACCCAACGCATGA--ACCTCTACCCTCACCTTTGAGCTTA
*
27508610 AGTAAAATATATAATCAACCATAACATTTTGCTTAACATTAGAAATGTTTTGTCAAGTCAAAACT
192 AGTAAAATATATAATCAAACATAACATTTTGCTTAACATTAGAAATGTTTTGTCAAGTCAAAACT
27508675 CATGACTTGATAGATTATTGAAT
257 CATGACTTGATAGATTATTGAAT
* * *
27508698 TGTATTTCATATATTGTATTTTAAAATTGTTTATTTAATAAAATAATTTAAAAAAATTAATATGG
1 TGTATTTCATATATTATATTTTAAAATTATTTATTTAATAAAATAATTT-AAAAAATTAATATGA
* * * *
27508763 GTCAGACCAGGG-C-CTCAGACTTAATTATTATATTTTGGGTCGGGTTTAGACAAATTTTTAAAT
65 GTCAGACC-GGGTCGCTCAGACTTAATTATTATATTTTGGATCGAGTTTAAACAAATTTTTAAAC
* * * *
27508826 TCATATTTCAAACCAACCCAAATTCAACTCGACGCATG-ACCTCTACCCTCACCTTTGAG-TTAA
129 TCATA-TTCAAACCAACACAAATCCAACCCAACGCATGAACCTCTACCCTCACCTTTGAGCTTAA
*
27508889 GT-AAATATATAATCAAACATAACATTTT-CATTAACATTAGAATAATGTTTTGTCTAGTCAAAA
193 GTAAAATATATAATCAAACATAACATTTTGC-TTAACATTAG-A-AATGTTTTGTCAAGTCAAAA
27508952 CTCATGACTTGATAGATTATTGA
255 CTCATGACTTGATAGATTATTGA
27508975 TGAAACAAAA
Statistics
Matches: 249, Mismatches: 22, Indels: 16
0.87 0.08 0.06
Matches are distributed among these distances:
276 1 0.00
277 35 0.14
278 7 0.03
279 63 0.25
281 48 0.19
282 26 0.10
283 46 0.18
284 20 0.08
285 3 0.01
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (279 bp):
TGTATTTCATATATTATATTTTAAAATTATTTATTTAATAAAATAATTTAAAAAATTAATATGAG
TCAGACCGGGTCGCTCAGACTTAATTATTATATTTTGGATCGAGTTTAAACAAATTTTTAAACTC
ATATTCAAACCAACACAAATCCAACCCAACGCATGAACCTCTACCCTCACCTTTGAGCTTAAGTA
AAATATATAATCAAACATAACATTTTGCTTAACATTAGAAATGTTTTGTCAAGTCAAAACTCATG
ACTTGATAGATTATTGAAT
Found at i:27509645 original size:24 final size:24
Alignment explanation
Indices: 27509596--27509684 Score: 72
Period size: 24 Copynumber: 3.7 Consensus size: 24
27509586 TATGTGTCTA
* * *
27509596 CATCTGTATCTAAAT-TTATATCTG
1 CATCTGTATCTGAATCTAAAAT-TG
* * *
27509620 CATTTGTATTTGTATCTAAAATTG
1 CATCTGTATCTGAATCTAAAATTG
*
27509644 CATCTGTCTCTGAATCTAAAATTG
1 CATCTGTATCTGAATCTAAAATTG
* * *
27509668 TATCTATATCTGTATCT
1 CATCTGTATCTGAATCT
27509685 GATCTGTTTG
Statistics
Matches: 50, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
24 46 0.92
25 4 0.08
ACGTcount: A:0.28, C:0.16, G:0.10, T:0.46
Consensus pattern (24 bp):
CATCTGTATCTGAATCTAAAATTG
Found at i:27511829 original size:7 final size:7
Alignment explanation
Indices: 27511812--27511847 Score: 63
Period size: 7 Copynumber: 5.0 Consensus size: 7
27511802 TATAAAAAAC
27511812 TATTAATA
1 TATT-ATA
27511820 TATTATA
1 TATTATA
27511827 TATTATA
1 TATTATA
27511834 TATTATA
1 TATTATA
27511841 TATTATA
1 TATTATA
27511848 AGATATGATA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 24 0.86
8 4 0.14
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TATTATA
Found at i:27514251 original size:25 final size:25
Alignment explanation
Indices: 27514223--27514301 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
27514213 CTAATGGCCG
27514223 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
27514248 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
27514270 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
27514295 ATGTGAT
1 ATGTGAT
27514302 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:27514273 original size:47 final size:47
Alignment explanation
Indices: 27514210--27518072 Score: 7564
Period size: 47 Copynumber: 82.0 Consensus size: 47
27514200 ATGATAGTAT
27514210 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27514257 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
27514304 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27514351 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27514398 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27514445 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27514492 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27514539 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27514586 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27514633 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27514680 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27514727 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27514774 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27514821 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27514868 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27514915 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27514962 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515009 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515056 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515103 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515150 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515197 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515244 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515291 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515338 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515385 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515432 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515479 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515526 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515573 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515620 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515667 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515714 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515761 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515808 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515855 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515902 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515949 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27515996 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27516043 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27516090 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27516137 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27516184 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27516231 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27516278 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27516325 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27516372 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27516419 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27516466 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27516513 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27516560 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTATATATGTGATAA
27516609 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTATATATGTGATAA
27516658 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27516705 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27516752 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
27516801 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27516848 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27516895 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27516942 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27516989 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27517036 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27517083 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27517130 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27517177 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
27517226 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27517273 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27517320 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
27517367 GGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27517414 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27517461 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27517508 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27517555 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27517602 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27517649 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27517696 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27517743 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27517790 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27517837 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27517884 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27517931 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
27517978 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * * * *
27518025 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27518072 G
1 G
27518073 TCCCGAAGGG
Statistics
Matches: 3796, Mismatches: 14, Indels: 12
0.99 0.00 0.00
Matches are distributed among these distances:
47 3606 0.95
49 190 0.05
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:27514323 original size:22 final size:22
Alignment explanation
Indices: 27514295--27514370 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
27514285 AAGTGTATAT
27514295 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ***
27514317 ATGTGATGAATGTGAAAGTGGATAT
1 ATGTGAT-AAGGCCTAA-TGG-CCG
27514342 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
27514364 ATGTGAT
1 ATGTGAT
27514371 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:27518247 original size:37 final size:37
Alignment explanation
Indices: 27518191--27518269 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27518181 CCGAGCTCTA
* * *
27518191 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
27518228 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
27518265 AAGAC
1 AAGAC
27518270 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:27520327 original size:40 final size:40
Alignment explanation
Indices: 27519484--27520315 Score: 1493
Period size: 40 Copynumber: 20.8 Consensus size: 40
27519474 GAGAATTGAG
27519484 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
27519524 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
27519564 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
27519604 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
27519644 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
27519684 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
27519724 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
27519764 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
27519804 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
27519844 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
27519884 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
27519924 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
27519964 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
27520004 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
27520044 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
27520084 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
27520124 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
27520164 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
27520204 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
27520244 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
27520284 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
27520316 ATCATGCTGG
Statistics
Matches: 775, Mismatches: 17, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 775 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:27523820 original size:47 final size:47
Alignment explanation
Indices: 27523754--27527004 Score: 6394
Period size: 47 Copynumber: 69.1 Consensus size: 47
27523744 GAAATGATAG
27523754 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27523801 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
27523850 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27523897 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27523944 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27523991 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524038 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524085 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524132 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524179 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524226 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524273 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524320 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524367 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524414 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524461 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524508 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
27524557 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524604 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524651 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524698 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524745 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524792 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524839 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524886 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524933 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27524980 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525027 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525074 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525121 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525168 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525215 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525262 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525309 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525356 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525403 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525450 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525497 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525544 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525591 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525638 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525685 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525732 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525779 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525826 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525873 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525920 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27525967 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526014 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526061 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526108 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526155 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526202 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526249 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526296 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526343 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526390 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526437 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526484 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526531 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526578 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526625 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526672 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526719 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526766 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526813 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526860 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27526907 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
27526954 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27527001 TAAG
1 TAAG
27527005 TCCCGAAGGG
Statistics
Matches: 3190, Mismatches: 10, Indels: 8
0.99 0.00 0.00
Matches are distributed among these distances:
47 3096 0.97
49 94 0.03
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:27527179 original size:37 final size:37
Alignment explanation
Indices: 27527123--27527201 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27527113 CCGAGCTCTA
* * *
27527123 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
27527160 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
27527197 AAGAC
1 AAGAC
27527202 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:27528884 original size:17 final size:18
Alignment explanation
Indices: 27528859--27528896 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
27528849 ATTATAAGGT
27528859 ATAATAAGAAATAAAAAA
1 ATAATAAGAAATAAAAAA
* *
27528877 ATAA-AAGATATAAATAA
1 ATAATAAGAAATAAAAAA
27528894 ATA
1 ATA
27528897 TGACACTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (18 bp):
ATAATAAGAAATAAAAAA
Found at i:27538682 original size:34 final size:34
Alignment explanation
Indices: 27538623--27538689 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
27538613 CCCTAATGCT
* * *
27538623 TACTGATACTGGAATAGGCTCAGGCCTAAACTGA
1 TACTGATACTGAAAAAGGCTCAGGCCCAAACTGA
* *
27538657 TACTGATACTGAAAAATGCTTAGGCCCAAACTG
1 TACTGATACTGAAAAAGGCTCAGGCCCAAACTG
27538690 CGATTATCTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (34 bp):
TACTGATACTGAAAAAGGCTCAGGCCCAAACTGA
Found at i:27539173 original size:20 final size:20
Alignment explanation
Indices: 27539148--27539185 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
27539138 TAAGCAAAGT
*
27539148 TACGGTTTTCCAACACAACC
1 TACGGTTTTCAAACACAACC
27539168 TACGGTTTTCAAACACAA
1 TACGGTTTTCAAACACAA
27539186 TATCATATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.26
Consensus pattern (20 bp):
TACGGTTTTCAAACACAACC
Found at i:27544854 original size:617 final size:617
Alignment explanation
Indices: 27543681--27544910 Score: 2147
Period size: 617 Copynumber: 2.0 Consensus size: 617
27543671 TCTAACCCTA
*
27543681 CACGCCATGTGAGGATTAAATCAACCCACCGATCCCTACACACCATGCTGTACCGAAATGTGGCA
1 CACGCCATGTGAGGATTAAATCAACCCACCCATCCCTACACACCATGCTGTACCGAAATGTGGCA
* *
27543746 CATAATCAGAAGGTTACAGCTGAGCTACCAGATAACAAGCTTAATAGCCTTTCAGACACTTCTTT
66 CATAATCAGAAGGTTACAGCTGAGCTACCAGATAACAAGCTTAATAGCCTTTCAGACACTTCCTC
27543811 CAAATATCATCAACCCACCCCGATGCAATGCAACATACAAAATATGTCATGCCATTATGCAATTA
131 CAAATATCATCAACCCACCCCGATGCAATGCAACATACAAAATATGTCATGCCATTATGCAATTA
27543876 ATAGTACATACATTTAGATATCATAAGTCATGCTCGGTATAAAAATCAAACAGACAGATCACATA
196 ATAGTACATACATTTAGATATCATAAGTCATGCTCGGTATAAAAATCAAACAGACAGATCACATA
*
27543941 TATAAGGGTCTAAGTAAAGCTTACTGACCCTATAGTAGGTTCACTGTTGACGTGGGCGACCCATG
261 TATAAGGGTCTAAGTAAAGCTTACTGACCCTACAGTAGGTTCACTGTTGACGTGGGCGACCCATG
* *
27544006 CAACCTTAGCAATCAATTCAGTGAAAATGAGCTCACACGCCCATGTGGTCCACCTGTGTAGGCCC
326 CAACCTTAGCAATCAATTCAGTGAAAATGAGCTCACACGCCCATGTGGTCCACCCGCGTAGGCCC
*
27544071 ACATGCCCGTGTGGCCCACTTGGCCCAAATTCGCCTTAGCTACATAGTCCATTTTTAATGTAACC
391 ACATGCCCGTGTGGCCCACTTGGCCCAAATTCGCCTTAGCTACATAGTCCATTTTCAATGTAACC
*
27544136 CGTGCTAGCTAAATATTCATATATGTTTTCACTATTTACTTATATGTTCCTTCAAAGCTGTCTAC
456 CGTGCTAGCTAAATATTAATATATGTTTTCACTATTTACTTATATGTTCCTTCAAAGCTGTCTAC
*
27544201 TGGAGTCATTGTTACTAAATTATTTATATCTTGAGTTACAAAATTCCAAATTAAGGTCCGCTTGA
521 TGGAGTCACTGTTACTAAATTATTTATATCTTGAGTTACAAAATTCCAAATTAAGGTCCGCTTGA
*
27544266 TGTCTTTGAAACTAGAGTCAAATACCTTTCCC
586 TGTCTTTGAAACTAGACTCAAATACCTTTCCC
* *
27544298 CACGCCATGTGGGGATTAAATCCACCCACCCATCCCTACACACCATGCTGTACCGAAATGTGGCA
1 CACGCCATGTGAGGATTAAATCAACCCACCCATCCCTACACACCATGCTGTACCGAAATGTGGCA
* *
27544363 CATAATCAGAAGGTTGCAGCTGAGCTGCCAGATAACAAGCTTAATAGCCTTTCAGACACTTCCTC
66 CATAATCAGAAGGTTACAGCTGAGCTACCAGATAACAAGCTTAATAGCCTTTCAGACACTTCCTC
*
27544428 CAAATATCATCAACCCACCTCGATGCAATGCAACATACAAAATATGTCATGCCATTATGCAATTA
131 CAAATATCATCAACCCACCCCGATGCAATGCAACATACAAAATATGTCATGCCATTATGCAATTA
* * *
27544493 TTAGTACATACATTTAGATATCATAAGTCATGCTCGGTATAAAAATCAGACAGACAGATCACTTA
196 ATAGTACATACATTTAGATATCATAAGTCATGCTCGGTATAAAAATCAAACAGACAGATCACATA
* *
27544558 TATAGGGGTCTAAGTAAAGCTTA-TCGACCCTACAGTAGGTTCACTGTTGACGTGGGTGACCCAT
261 TATAAGGGTCTAAGTAAAGCTTACT-GACCCTACAGTAGGTTCACTGTTGACGTGGGCGACCCAT
* * **
27544622 GCAACTTTAGCAATCAATTCAGTGAAAATGGGCTCACACGCCCATGTGGTGTACCCGCGTAGGCC
325 GCAACCTTAGCAATCAATTCAGTGAAAATGAGCTCACACGCCCATGTGGTCCACCCGCGTAGGCC
* * * * *
27544687 CACATGCCCGTGTGGCCCACTTGGTCCAAATTGGCCTTGGCTGCATAGTCCATTTTCATTGTAAC
390 CACATGCCCGTGTGGCCCACTTGGCCCAAATTCGCCTTAGCTACATAGTCCATTTTCAATGTAAC
*
27544752 CCGTGCTAGCTAAATATTAATATATGTTTTCACTATTTACTTATATGTTCCTTCAAAGTTGTCTA
455 CCGTGCTAGCTAAATATTAATATATGTTTTCACTATTTACTTATATGTTCCTTCAAAGCTGTCTA
* *
27544817 CTTGAGTCACTGTTACTAAATTATTTATATCTTGAGTTACAGAATTCCAAATTAAGGTCCGCTTG
520 CTGGAGTCACTGTTACTAAATTATTTATATCTTGAGTTACAAAATTCCAAATTAAGGTCCGCTTG
*
27544882 ATGTTTTTGAAACTAGACTCAAATACCTT
585 ATGTCTTTGAAACTAGACTCAAATACCTT
27544911 CCTACTATAA
Statistics
Matches: 579, Mismatches: 33, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
616 1 0.00
617 578 1.00
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.29
Consensus pattern (617 bp):
CACGCCATGTGAGGATTAAATCAACCCACCCATCCCTACACACCATGCTGTACCGAAATGTGGCA
CATAATCAGAAGGTTACAGCTGAGCTACCAGATAACAAGCTTAATAGCCTTTCAGACACTTCCTC
CAAATATCATCAACCCACCCCGATGCAATGCAACATACAAAATATGTCATGCCATTATGCAATTA
ATAGTACATACATTTAGATATCATAAGTCATGCTCGGTATAAAAATCAAACAGACAGATCACATA
TATAAGGGTCTAAGTAAAGCTTACTGACCCTACAGTAGGTTCACTGTTGACGTGGGCGACCCATG
CAACCTTAGCAATCAATTCAGTGAAAATGAGCTCACACGCCCATGTGGTCCACCCGCGTAGGCCC
ACATGCCCGTGTGGCCCACTTGGCCCAAATTCGCCTTAGCTACATAGTCCATTTTCAATGTAACC
CGTGCTAGCTAAATATTAATATATGTTTTCACTATTTACTTATATGTTCCTTCAAAGCTGTCTAC
TGGAGTCACTGTTACTAAATTATTTATATCTTGAGTTACAAAATTCCAAATTAAGGTCCGCTTGA
TGTCTTTGAAACTAGACTCAAATACCTTTCCC
Found at i:27546505 original size:18 final size:20
Alignment explanation
Indices: 27546481--27546530 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
27546471 TGAATGCAAT
27546481 TAAATATTATTAT-ATTTGA
1 TAAATATTATTATAATTTGA
*
27546500 -AAATATAAATT-TAATTTGA
1 TAAATAT-TATTATAATTTGA
27546519 TAAATATTATTA
1 TAAATATTATTA
27546531 ATATGTGTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
18 7 0.28
19 12 0.48
20 6 0.24
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (20 bp):
TAAATATTATTATAATTTGA
Found at i:27553438 original size:27 final size:27
Alignment explanation
Indices: 27553407--27553487 Score: 148
Period size: 27 Copynumber: 3.1 Consensus size: 27
27553397 AACCAGAAAA
27553407 ACAAAGAAACGTGCCAAAATACGGCAG
1 ACAAAGAAACGTGCCAAAATACGGCAG
27553434 ACAAAGAAACGTGCCAAAATACGGCAG
1 ACAAAGAAACGTGCCAAAATACGGCAG
27553461 ACAAAGAAACGTGCC--AATACGGCAG
1 ACAAAGAAACGTGCCAAAATACGGCAG
27553486 AC
1 AC
27553488 TAAGTATTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
25 12 0.22
27 42 0.78
ACGTcount: A:0.47, C:0.23, G:0.22, T:0.07
Consensus pattern (27 bp):
ACAAAGAAACGTGCCAAAATACGGCAG
Found at i:27560904 original size:295 final size:294
Alignment explanation
Indices: 27560374--27560962 Score: 1169
Period size: 295 Copynumber: 2.0 Consensus size: 294
27560364 GAATTTTTAG
27560374 TTCAGCCAATTGGTACAGTTTATTCTTTAAATATTCCCCTATTTCACTGTCTGCCGTTTCTGACC
1 TTCAGCCAATTGGTACAGTTTATTCTTTAAATATTCCCCTATTTCACTGTCTGCCGTTTCTGACC
27560439 TCTCTTCACTAAAAATCAAATATCTCTTAGTACAAAATTTTGATGGTAGTGTTGTTTATTTATAT
66 TCTCTTCACTAAAAATCAAATATCTCTTAGTACAAAATTTTGATGGTAGTGTTGTTTATTTATAT
27560504 TGAAACCGGAATCATTAAGGAATTTAATCATATAAATTTAAAATTAAAATTAATTTTTTACAATT
131 TGAAACCGGAATCATTAAGGAATTTAATCATATAAATTTAAAATTAAAATTAATTTTTTACAATT
27560569 TATAATGATTTATCAAAGTTAGAACAGGGGATTCCAAAATCAATCCGACCCTACCTCACTAAAAT
196 TATAATGATTTATCAAAGTTAGAACAGGGGATTCCAAAATCAATCCGACCCTACCTCACTAAAAT
27560634 TCAAATATCTCAAAATATATAACTCTTTTACTTT
261 TCAAATATCTCAAAATATATAACTCTTTTACTTT
27560668 NTTCAGCCAATTGGTACAGTTTATTCTTTAAATATTCCCCTATTTCACTGTCTGCCGTTTCTGAC
1 -TTCAGCCAATTGGTACAGTTTATTCTTTAAATATTCCCCTATTTCACTGTCTGCCGTTTCTGAC
27560733 CTCTCTTCACTAAAAATCAAATATCTCTTAGTACAAAATTTTGATGGTAGTGTTGTTTATTTATA
65 CTCTCTTCACTAAAAATCAAATATCTCTTAGTACAAAATTTTGATGGTAGTGTTGTTTATTTATA
27560798 TTGAAACCGGAATCATTAAGGAATTTAATCATATAAATTTAAAATTAAAATTAATTTTTTACAAT
130 TTGAAACCGGAATCATTAAGGAATTTAATCATATAAATTTAAAATTAAAATTAATTTTTTACAAT
27560863 TTATAATGATTTATCAAAGTTAGAACAGGGGATTCCAAAATCAATCCGACCCTACCTCACTAAAA
195 TTATAATGATTTATCAAAGTTAGAACAGGGGATTCCAAAATCAATCCGACCCTACCTCACTAAAA
27560928 TTCAAATATCTCAAAATATATAACTCTTTTACTTT
260 TTCAAATATCTCAAAATATATAACTCTTTTACTTT
27560963 CTCTTTTTCT
Statistics
Matches: 294, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
295 294 1.00
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (294 bp):
TTCAGCCAATTGGTACAGTTTATTCTTTAAATATTCCCCTATTTCACTGTCTGCCGTTTCTGACC
TCTCTTCACTAAAAATCAAATATCTCTTAGTACAAAATTTTGATGGTAGTGTTGTTTATTTATAT
TGAAACCGGAATCATTAAGGAATTTAATCATATAAATTTAAAATTAAAATTAATTTTTTACAATT
TATAATGATTTATCAAAGTTAGAACAGGGGATTCCAAAATCAATCCGACCCTACCTCACTAAAAT
TCAAATATCTCAAAATATATAACTCTTTTACTTT
Found at i:27585077 original size:40 final size:39
Alignment explanation
Indices: 27585046--27585255 Score: 233
Period size: 40 Copynumber: 5.3 Consensus size: 39
27585036 GGACTAAGAT
* *
27585046 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
27585086 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
27585126 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* ** *
27585166 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGAT-ACAAATCCGGGTTAAGTC
* * * * *
27585206 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
27585245 CCGAAGGCATT
1 CCGAAGGCATT
27585256 TGAACGAGGA
Statistics
Matches: 153, Mismatches: 13, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
39 33 0.22
40 117 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:27585209 original size:120 final size:120
Alignment explanation
Indices: 27584993--27585255 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
27584983 TTGAATGCTG
* *
27584993 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
27585057 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
27585113 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * * * *
27585176 TCGTGCGAGTTGTTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
27585232 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
27585256 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
119 38 0.32
120 73 0.61
121 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:27585275 original size:79 final size:80
Alignment explanation
Indices: 27585046--27585290 Score: 228
Period size: 80 Copynumber: 3.1 Consensus size: 80
27585036 GGACTAAGAT
* * * * * * * ** *
27585046 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGA-GATAC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGA-GC
27585109 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* * * ** ** *
27585126 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
27585191 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
27585206 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
27585270 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
27585284 CCGAAGG
1 CCGAAGG
27585291 TACGTGATTT
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
78 14 0.10
79 46 0.33
80 75 0.54
81 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:27590370 original size:6 final size:6
Alignment explanation
Indices: 27590359--27590400 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
27590349 GGTTTTCTTA
* *
27590359 AAATGG AAATGG AAATGG AAATGA AAATGA AAATGAG AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATG-G AAATG
27590401 ATTCTTTTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
6 28 0.85
7 5 0.15
ACGTcount: A:0.57, C:0.00, G:0.26, T:0.17
Consensus pattern (6 bp):
AAATGG
Found at i:27606342 original size:12 final size:12
Alignment explanation
Indices: 27606325--27606356 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
27606315 ATGTGTCTAC
27606325 ATTTGTATCTGA
1 ATTTGTATCTGA
*
27606337 ATTTGTATCTGC
1 ATTTGTATCTGA
27606349 ATTTGTAT
1 ATTTGTAT
27606357 TTGTATCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.22, C:0.09, G:0.16, T:0.53
Consensus pattern (12 bp):
ATTTGTATCTGA
Found at i:27606389 original size:30 final size:30
Alignment explanation
Indices: 27606325--27606389 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
27606315 ATGTGTCTAC
* * * * *
27606325 ATTTGTATCTGAATTTGTATCTGCATTTGT
1 ATTTGTATCTAAAATTGTATCTACATCTGA
*
27606355 ATTTGTATCTAAAATTGTATCTATATCTGA
1 ATTTGTATCTAAAATTGTATCTACATCTGA
27606385 ATTTG
1 ATTTG
27606390 AAATTGTATC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.26, C:0.09, G:0.14, T:0.51
Consensus pattern (30 bp):
ATTTGTATCTAAAATTGTATCTACATCTGA
Found at i:27618760 original size:42 final size:42
Alignment explanation
Indices: 27618711--27618793 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
27618701 AAATTCAAAA
* *
27618711 GGATAAGAATAAGAGTTAAAATGTTTGAATTTCAAATGTTTT
1 GGATAAGAACAAGAGTTAAAATGTTTGAATTTCAAACGTTTT
*
27618753 GGATAAGAACAAGAGTTCAAATGTTTGAATTTCAAACGTTT
1 GGATAAGAACAAGAGTTAAAATGTTTGAATTTCAAACGTTT
27618794 CACACATATT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.40, C:0.06, G:0.19, T:0.35
Consensus pattern (42 bp):
GGATAAGAACAAGAGTTAAAATGTTTGAATTTCAAACGTTTT
Found at i:27622722 original size:3 final size:3
Alignment explanation
Indices: 27622707--27622757 Score: 93
Period size: 3 Copynumber: 17.0 Consensus size: 3
27622697 ATCGTTTTTC
*
27622707 TTA TTA ATA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
27622755 TTA
1 TTA
27622758 ACGCATTTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:27626405 original size:9 final size:9
Alignment explanation
Indices: 27626393--27626427 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
27626383 AAAAAGGAAA
27626393 AAGAAAAAG
1 AAGAAAAAG
27626402 AAGAAAAAG
1 AAGAAAAAG
*
27626411 AAGAAGAAG
1 AAGAAAAAG
27626420 AAGAAAAA
1 AAGAAAAA
27626428 AGAGAGGACA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (9 bp):
AAGAAAAAG
Found at i:27626407 original size:15 final size:15
Alignment explanation
Indices: 27626389--27626421 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
27626379 TAAAAAAAAG
27626389 GAAAAAGAAAAAGAA
1 GAAAAAGAAAAAGAA
*
27626404 GAAAAAGAAGAAGAA
1 GAAAAAGAAAAAGAA
27626419 GAA
1 GAA
27626422 GAAAAAAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (15 bp):
GAAAAAGAAAAAGAA
Found at i:27638349 original size:27 final size:27
Alignment explanation
Indices: 27638318--27638495 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
27638308 TAAATTGTAC
27638318 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
27638345 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27638371 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
27638399 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
27638427 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27638454 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
27638481 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27638496 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:27638432 original size:82 final size:81
Alignment explanation
Indices: 27638319--27638474 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
27638309 AAATTGTACA
* *
27638319 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
27638383 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
27638400 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
27638465 TGCGAGTTGA
65 TGCGAATTGA
27638475 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:27638486 original size:82 final size:81
Alignment explanation
Indices: 27638315--27638495 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
27638305 GATTAAATTG
* *
27638315 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
27638380 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
27638396 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
27638460 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
27638478 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
27638496 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:27641651 original size:22 final size:23
Alignment explanation
Indices: 27641626--27641670 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
27641616 TTTCCGTAAA
* *
27641626 TATATTTA-TTTTATCTTTTTAT
1 TATATTTACTTATATCCTTTTAT
27641648 TATATTTACTTATATCCTTTTAT
1 TATATTTACTTATATCCTTTTAT
27641671 AATTTCAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (23 bp):
TATATTTACTTATATCCTTTTAT
Found at i:27643604 original size:25 final size:26
Alignment explanation
Indices: 27643563--27643615 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
27643553 AAAATAAAGA
*
27643563 AATTAAAATTTATTTTTTAATA-AAT
1 AATTAAAATTTAGTTTTTAATATAAT
*
27643588 AATT-AAATTTAAGTTTTTAGTATAAT
1 AATTAAAATTT-AGTTTTTAATATAAT
27643614 AA
1 AA
27643616 GTATACTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 6 0.25
25 13 0.54
26 5 0.21
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (26 bp):
AATTAAAATTTAGTTTTTAATATAAT
Found at i:27644005 original size:14 final size:14
Alignment explanation
Indices: 27643961--27644007 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
27643951 AAATTTATTT
27643961 ATTTATTATATAAA
1 ATTTATTATATAAA
* * *
27643975 ATTT-TAAAATAAT
1 ATTTATTATATAAA
27643988 ATTTATTATATAAA
1 ATTTATTATATAAA
27644002 ATTTAT
1 ATTTAT
27644008 CTTTTGTCCT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
13 10 0.38
14 16 0.62
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
ATTTATTATATAAA
Found at i:27649699 original size:34 final size:34
Alignment explanation
Indices: 27649641--27649708 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
27649631 AAAAATAATC
* * *
27649641 TCAGTTTGGGCCTACACCCTTTTCAGTATCAGTA
1 TCAGTTTAGGCCTACACCCATTTCAATATCAGTA
*
27649675 TCAGTTTAGGCCTA-AGCCCATTTCAATATGAGTA
1 TCAGTTTAGGCCTACA-CCCATTTCAATATCAGTA
27649709 AGTATTAGGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 1 0.03
34 28 0.97
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.34
Consensus pattern (34 bp):
TCAGTTTAGGCCTACACCCATTTCAATATCAGTA
Found at i:27656968 original size:34 final size:34
Alignment explanation
Indices: 27656924--27656989 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
27656914 AAATAATCTC
*
27656924 AGTTTGGGCCTAAGCCC-TTTTCAGTATCAGTATT
1 AGTTTAGGCCTAAGCCCATTTT-AGTATCAGTATT
*
27656958 AGTTTAGGCCTAAGCCCATTTTAGTATGAGTA
1 AGTTTAGGCCTAAGCCCATTTTAGTATCAGTA
27656990 AGCATTAGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 25 0.86
35 4 0.14
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.36
Consensus pattern (34 bp):
AGTTTAGGCCTAAGCCCATTTTAGTATCAGTATT
Found at i:27657002 original size:34 final size:35
Alignment explanation
Indices: 27656929--27657010 Score: 91
Period size: 34 Copynumber: 2.4 Consensus size: 35
27656919 ATCTCAGTTT
*
27656929 GGGCCTAAGCCC-TTTTCAGTATCAGTATTAGTTTA
1 GGGCCTAAGCCCATTTTCAGTATCAGTA-TAGATTA
*
27656964 -GGCCTAAGCCCATTTT-AGTATGAGTA-AGCATTA
1 GGGCCTAAGCCCATTTTCAGTATCAGTATAG-ATTA
*
27656997 GGGCCTTAGCCCAT
1 GGGCCTAAGCCCAT
27657011 CACAGTACAG
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
32 2 0.05
33 3 0.07
34 32 0.78
35 4 0.10
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (35 bp):
GGGCCTAAGCCCATTTTCAGTATCAGTATAGATTA
Found at i:27660321 original size:47 final size:47
Alignment explanation
Indices: 27660255--27660640 Score: 601
Period size: 47 Copynumber: 8.1 Consensus size: 47
27660245 GAAATGATAG
27660255 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27660302 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27660349 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27660396 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
***
27660445 TAAGGCCTAATGATTGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
27660494 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
27660543 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
27660590 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27660637 TAAG
1 TAAG
27660641 TCCCGAAGGG
Statistics
Matches: 321, Mismatches: 16, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 183 0.57
49 138 0.43
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:27660815 original size:37 final size:37
Alignment explanation
Indices: 27660759--27660837 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27660749 CCGAGCTCTA
* * *
27660759 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
27660796 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
27660833 AAGAC
1 AAGAC
27660838 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:27670064 original size:20 final size:20
Alignment explanation
Indices: 27670020--27670064 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
27670010 TTTGATAAAC
27670020 TCCC-CCCAATCCCTTAACT
1 TCCCTCCCAATCCCTTAACT
*
27670039 T-TCTCCCATATCCC-TAACT
1 TCCCTCCCA-ATCCCTTAACT
27670058 TCCCTCC
1 TCCCTCC
27670065 TAAAAAACCG
Statistics
Matches: 21, Mismatches: 2, Indels: 5
0.75 0.07 0.18
Matches are distributed among these distances:
18 1 0.05
19 11 0.52
20 9 0.43
ACGTcount: A:0.18, C:0.51, G:0.00, T:0.31
Consensus pattern (20 bp):
TCCCTCCCAATCCCTTAACT
Found at i:27672470 original size:42 final size:41
Alignment explanation
Indices: 27672388--27672536 Score: 165
Period size: 42 Copynumber: 3.6 Consensus size: 41
27672378 GTTACTCCGT
* * *
27672388 GGAATCAGCACTTAGCAACCAAC-TTATATTCAATGATACGG
1 GGAATCAGCACTTAGCAACC-CCTTTACAATCAATGATACGG
* * * *
27672429 GGAATCATCACATAGTAACCCCTTTCACAATCAAGGATACGG
1 GGAATCAGCACTTAGCAACCCCTTT-ACAATCAATGATACGG
* * *
27672471 TGGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTCGG
1 -GGAATCAGCACTTAGCAACC-CCTTTACAATCAATGATACGG
27672514 GGAATCAGCACTTAGCAACCCCT
1 GGAATCAGCACTTAGCAACCCCT
27672537 CGAAGAATCT
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
40 1 0.01
41 22 0.24
42 33 0.37
43 29 0.32
44 5 0.06
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.23
Consensus pattern (41 bp):
GGAATCAGCACTTAGCAACCCCTTTACAATCAATGATACGG
Found at i:27672592 original size:67 final size:68
Alignment explanation
Indices: 27672473--27672603 Score: 194
Period size: 67 Copynumber: 1.9 Consensus size: 68
27672463 GGATACGGTG
27672473 GAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTCGGGGAATCAGCACTTAGCAACCCCTC
1 GAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTCGGGGAATCAGCACTTAGCAACCCCTC
27672538 GAA
66 GAA
* * * * *
27672541 GAATCTGCACTTAGCAACC-CCTTTTTG-ATCAGTGATTCGGGGAATCTGCACTTAGCAACCCCT
1 GAATCAGCACTTAGCAACCACC-TTTAGAATCAATAATTCGGGGAATCAGCACTTAGCAACCCCT
27672604 TTTTGATTAG
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
67 35 0.61
68 22 0.39
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (68 bp):
GAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTCGGGGAATCAGCACTTAGCAACCCCTC
GAA
Found at i:27672598 original size:41 final size:41
Alignment explanation
Indices: 27672541--27672683 Score: 250
Period size: 41 Copynumber: 3.5 Consensus size: 41
27672531 ACCCCTCGAA
27672541 GAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCGGG
1 GAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCGGG
*
27672582 GAATCTGCACTTAGCAACCCCTTTTTGATTAGTGATTCGGG
1 GAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCGGG
* *
27672623 GAATCTCCACTTAGCAAGCCCTTTTTGATCAGTGATTCGGG
1 GAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCGGG
*
27672664 AAATCTGCACTTAGCAACCC
1 GAATCTGCACTTAGCAACCC
27672684 TTTACATTCA
Statistics
Matches: 95, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 95 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (41 bp):
GAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCGGG
Found at i:27673676 original size:11 final size:13
Alignment explanation
Indices: 27673646--27673677 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
27673636 TGCTCAAACG
27673646 TCAAAATTTTCGA
1 TCAAAATTTTCGA
27673659 TCAAAATTTTC-A
1 TCAAAATTTTCGA
27673671 -CAAAATT
1 TCAAAATT
27673678 ATTCTGTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.37
12 1 0.05
13 11 0.58
ACGTcount: A:0.44, C:0.16, G:0.03, T:0.38
Consensus pattern (13 bp):
TCAAAATTTTCGA
Found at i:27685091 original size:27 final size:27
Alignment explanation
Indices: 27685011--27685236 Score: 262
Period size: 27 Copynumber: 8.5 Consensus size: 27
27685001 GGTATAACAA
*
27685011 TCATTTTACCCTATG-GGGTATTTCGA
1 TCATTTTACCCTATGAGGGTATTTCGG
* *
27685037 TCATTTTA-CCTACG-GGGTATTTTGG
1 TCATTTTACCCTATGAGGGTATTTCGG
* * *
27685062 TCATTTTACCCCATGGGGGTATTTCAG
1 TCATTTTACCCTATGAGGGTATTTCGG
*
27685089 TCATTTTACCCTATGAGGGTACTTCGG
1 TCATTTTACCCTATGAGGGTATTTCGG
*
27685116 TCATTTTACCCTATGAGGGTACTTCGG
1 TCATTTTACCCTATGAGGGTATTTCGG
* *
27685143 TCATTTTATCCTATGAGGGTATCTCGG
1 TCATTTTACCCTATGAGGGTATTTCGG
* * * * *
27685170 TCATTTTATCCTCTG-GGCTATTTTGA
1 TCATTTTACCCTATGAGGGTATTTCGG
* *
27685196 TCATTTTACCCTATAAGAGTATTTCGG
1 TCATTTTACCCTATGAGGGTATTTCGG
*
27685223 TTATTTTACCCTAT
1 TCATTTTACCCTAT
27685237 TTTAGGGTAT
Statistics
Matches: 170, Mismatches: 27, Indels: 5
0.84 0.13 0.02
Matches are distributed among these distances:
25 22 0.13
26 31 0.18
27 117 0.69
ACGTcount: A:0.19, C:0.20, G:0.19, T:0.42
Consensus pattern (27 bp):
TCATTTTACCCTATGAGGGTATTTCGG
Found at i:27685222 original size:107 final size:105
Alignment explanation
Indices: 27685011--27685236 Score: 278
Period size: 107 Copynumber: 2.1 Consensus size: 105
27685001 GGTATAACAA
* * *
27685011 TCATTTTACCCTATGGGGTATTTCGATCATTTTACCTACGGGGTATTTTGGTCATTTTACCCCAT
1 TCATTTTACCCTATGGGGTACTTCGATCATTTTACCTACGGGGTATCTCGGTCATTTTACCCCAT
* * *
27685076 GGGGGTATTTCAGTCATTTTACCCTATGAGGGTACTTCGG
66 GGGGCTATTTCAGTCATTTTACCCTATAAGAGTACTTCGG
* *
27685116 TCATTTTACCCTATGAGGGTACTTCGGTCATTTTATCCTATGAGGGTATCTCGGTCATTTTATCC
1 TCATTTTACCCTATG-GGGTACTTCGATCATTTTA-CCTACG-GGGTATCTCGGTCATTTTA-CC
* * *
27685181 TC-T-GGGCTATTT-TGATCATTTTACCCTATAAGAGTATTTCGG
62 CCATGGGGCTATTTCAG-TCATTTTACCCTATAAGAGTACTTCGG
*
27685223 TTATTTTACCCTAT
1 TCATTTTACCCTAT
27685237 TTTAGGGTAT
Statistics
Matches: 104, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
105 15 0.14
106 18 0.17
107 50 0.48
108 18 0.17
109 3 0.03
ACGTcount: A:0.19, C:0.20, G:0.19, T:0.42
Consensus pattern (105 bp):
TCATTTTACCCTATGGGGTACTTCGATCATTTTACCTACGGGGTATCTCGGTCATTTTACCCCAT
GGGGCTATTTCAGTCATTTTACCCTATAAGAGTACTTCGG
Found at i:27690276 original size:21 final size:21
Alignment explanation
Indices: 27690252--27690301 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
27690242 GCCATTTATT
*
27690252 GCATGAAAAGTATATAATAAA
1 GCATGAAAACTATATAATAAA
*
27690273 GCATGAAAACTATATAATAAT
1 GCATGAAAACTATATAATAAA
27690294 GCAT-AAAA
1 GCATGAAAA
27690302 TCACATTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 4 0.15
21 23 0.85
ACGTcount: A:0.56, C:0.08, G:0.12, T:0.24
Consensus pattern (21 bp):
GCATGAAAACTATATAATAAA
Found at i:27700994 original size:27 final size:27
Alignment explanation
Indices: 27700961--27701440 Score: 852
Period size: 27 Copynumber: 17.6 Consensus size: 27
27700951 TAAATTGTGC
*
27700961 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
27700988 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
27701015 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
27701042 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
27701069 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
27701096 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
27701123 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
27701151 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
27701178 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
27701205 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
27701233 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
27701261 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
27701289 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
27701317 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
27701344 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
27701371 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
27701399 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
27701426 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27701441 GACTTAATAT
Statistics
Matches: 444, Mismatches: 6, Indels: 6
0.97 0.01 0.01
Matches are distributed among these distances:
27 281 0.63
28 163 0.37
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:27701201 original size:82 final size:82
Alignment explanation
Indices: 27700961--27701440 Score: 874
Period size: 82 Copynumber: 5.9 Consensus size: 82
27700951 TAAATTGTGC
*
27700961 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
27701025 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
27701042 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
27701106 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
*
27701123 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
27701188 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
27701205 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAG
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAG
27701270 TGTGCGAGTTTGACTATGT
65 TGTGCGAG-TTGACTATGT
27701289 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
27701354 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
* * * *
27701371 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
27701436 GTGCG
66 GTGCG
27701441 GACTTAATAT
Statistics
Matches: 389, Mismatches: 6, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
81 97 0.25
82 183 0.47
83 54 0.14
84 55 0.14
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
GTGCGAGTTGACTATGT
Found at i:27730858 original size:14 final size:15
Alignment explanation
Indices: 27730839--27730867 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
27730829 TTATCCCAAT
27730839 CAAATAAAG-AAAAA
1 CAAATAAAGCAAAAA
27730853 CAAATAAAGCAAAAA
1 CAAATAAAGCAAAAA
27730868 TGAATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.76, C:0.10, G:0.07, T:0.07
Consensus pattern (15 bp):
CAAATAAAGCAAAAA
Found at i:27737390 original size:32 final size:32
Alignment explanation
Indices: 27737339--27737538 Score: 258
Period size: 32 Copynumber: 6.3 Consensus size: 32
27737329 GAATGGATAC
* * *
27737339 AAGCCATAAGT-ACAGTAATATGATTGGCACA
1 AAGCCATCAGTAATAGTAATATGATCGGCACA
* *
27737370 AAGTCATCAGTAGTAGTAATATGATCGGCACA
1 AAGCCATCAGTAATAGTAATATGATCGGCACA
** *
27737402 CTGCCATCAGTAATAGTAGTATGATCGGCACA
1 AAGCCATCAGTAATAGTAATATGATCGGCACA
* *
27737434 AAGCCATCAGTAGTAGTAATATGATTGGCACA
1 AAGCCATCAGTAATAGTAATATGATCGGCACA
* * *
27737466 CACCCATCAGTAATGGTAATATGATCGGCACA
1 AAGCCATCAGTAATAGTAATATGATCGGCACA
* *
27737498 CAGCCATCAGTAATGGTAATATGATCGGCACA
1 AAGCCATCAGTAATAGTAATATGATCGGCACA
27737530 AAGCCATCA
1 AAGCCATCA
27737539 ATAGCATCGC
Statistics
Matches: 146, Mismatches: 22, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
31 9 0.06
32 137 0.94
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.23
Consensus pattern (32 bp):
AAGCCATCAGTAATAGTAATATGATCGGCACA
Found at i:27737521 original size:96 final size:95
Alignment explanation
Indices: 27737339--27737538 Score: 301
Period size: 96 Copynumber: 2.1 Consensus size: 95
27737329 GAATGGATAC
* ** * *
27737339 AAGCCATAAGTACAGTAATATGATTGGCACAAAGTCATCAGTAGTAGTAATATGATCGGCACACT
1 AAGCCATCAGTACAGTAATATGATTGGCACAAACCCATCAGTAATAGTAATATGATCGGCACACA
*
27737404 GCCATCAGTAATAGTAGTATGATCGGCACA
66 GCCATCAGTAATAGTAATATGATCGGCACA
* * *
27737434 AAGCCATCAGTAGTAGTAATATGATTGGCACACACCCATCAGTAATGGTAATATGATCGGCACAC
1 AAGCCATCAGTA-CAGTAATATGATTGGCACAAACCCATCAGTAATAGTAATATGATCGGCACAC
*
27737499 AGCCATCAGTAATGGTAATATGATCGGCACA
65 AGCCATCAGTAATAGTAATATGATCGGCACA
27737530 AAGCCATCA
1 AAGCCATCA
27737539 ATAGCATCGC
Statistics
Matches: 94, Mismatches: 10, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
95 11 0.12
96 83 0.88
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.23
Consensus pattern (95 bp):
AAGCCATCAGTACAGTAATATGATTGGCACAAACCCATCAGTAATAGTAATATGATCGGCACACA
GCCATCAGTAATAGTAATATGATCGGCACA
Found at i:27737596 original size:26 final size:26
Alignment explanation
Indices: 27737532--27737597 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
27737522 TCGGCACAAA
* * *
27737532 GCCATCAATAGCATCGCAGCAAAGTT
1 GCCAACAATAGTATCGCAGCAAAGCT
* *
27737558 GCCAACAACAGTATCGCAGTAAAGCT
1 GCCAACAATAGTATCGCAGCAAAGCT
**
27737584 GCCAGTAATAGTAT
1 GCCAACAATAGTAT
27737598 ATGTGACCAA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (26 bp):
GCCAACAATAGTATCGCAGCAAAGCT
Found at i:27737615 original size:27 final size:27
Alignment explanation
Indices: 27737585--27737648 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
27737575 AGTAAAGCTG
* *
27737585 CCAGTAATAGT-ATATGTGACCAAGCCA
1 CCAGTAACAGTGAT-TGTGACAAAGCCA
*
27737612 CCAGTAACAGTGATTGTGGCAAAGCCA
1 CCAGTAACAGTGATTGTGACAAAGCCA
27737639 CCAGT-ACAGT
1 CCAGTAACAGT
27737649 ACTTCCTCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.15
27 26 0.79
28 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.20
Consensus pattern (27 bp):
CCAGTAACAGTGATTGTGACAAAGCCA
Found at i:27737744 original size:24 final size:24
Alignment explanation
Indices: 27737712--27737767 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
27737702 GCCATGCATG
*
27737712 AAATTAGTCATACAAATCACAAAC
1 AAATCAGTCATACAAATCACAAAC
** * *
27737736 AAATCAGTCATTTAAATCATAGAC
1 AAATCAGTCATACAAATCACAAAC
27737760 AAATCAGT
1 AAATCAGT
27737768 ATTTTAAATC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.50, C:0.18, G:0.07, T:0.25
Consensus pattern (24 bp):
AAATCAGTCATACAAATCACAAAC
Found at i:27737773 original size:24 final size:24
Alignment explanation
Indices: 27737725--27737846 Score: 104
Period size: 24 Copynumber: 5.1 Consensus size: 24
27737715 TTAGTCATAC
*
27737725 AAATCACAAACAAATCAGTCATTT
1 AAATCATAAACAAATCAGTCATTT
*
27737749 AAATCATAGACAAATCAGT-ATTTT
1 AAATCATAAACAAATCAGTCA-TTT
* *
27737773 AAATCATAAAAAAATTAGTCATTT
1 AAATCATAAACAAATCAGTCATTT
* ** *
27737797 ACATC-TCGGACAAATCATTCATTT
1 AAATCAT-AAACAAATCAGTCATTT
* * * *
27737821 ACATCACAAGCAAATCAATCATTT
1 AAATCATAAACAAATCAGTCATTT
27737845 AA
1 AA
27737847 CCCCGAGGGG
Statistics
Matches: 77, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
23 2 0.03
24 74 0.96
25 1 0.01
ACGTcount: A:0.47, C:0.18, G:0.06, T:0.30
Consensus pattern (24 bp):
AAATCATAAACAAATCAGTCATTT
Found at i:27737965 original size:27 final size:27
Alignment explanation
Indices: 27737864--27737965 Score: 141
Period size: 27 Copynumber: 3.8 Consensus size: 27
27737854 GGGAAAAATA
*
27737864 GTCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
27737891 GTCATTTTACCTTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
27737918 GTCATTTTATCCTACAGGGGCATTGCA
1 GTCATTTTACCCTACAGGGGCATTACG
*
27737945 GTTATTTTACCCTACAGGGGC
1 GTCATTTTACCCTACAGGGGC
27737966 GTTATAGTTC
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:27737982 original size:27 final size:27
Alignment explanation
Indices: 27737871--27737984 Score: 93
Period size: 27 Copynumber: 4.2 Consensus size: 27
27737861 ATAGTCATTT
* * * *
27737871 TACCCTATAGGGGCATTACGGTCATTT
1 TACCCTACAGGGGCATTACAGTTATTC
* * * * *
27737898 TACCTTATAGGGGCATTACGGTCATTT
1 TACCCTACAGGGGCATTACAGTTATTC
* * *
27737925 TATCCTACAGGGGCATTGCAGTTATTT
1 TACCCTACAGGGGCATTACAGTTATTC
* * *
27737952 TACCCTACAGGGGCGTTATAGTTCTTC
1 TACCCTACAGGGGCATTACAGTTATTC
27737979 TACCCT
1 TACCCT
27737985 TCGAGAGTAT
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (27 bp):
TACCCTACAGGGGCATTACAGTTATTC
Found at i:27738033 original size:27 final size:28
Alignment explanation
Indices: 27737979--27738062 Score: 84
Period size: 27 Copynumber: 3.1 Consensus size: 28
27737969 ATAGTTCTTC
* *
27737979 TACCCTTCGAGAGTA-TTTCGATAATTT
1 TACCCTTCGAGGGTATTTTAGATAATTT
*
27738006 TACCCTTCGAGGGTATTTTAG-TAGTTT
1 TACCCTTCGAGGGTATTTTAGATAATTT
** **
27738033 TACCCTTTAAGGGTATTCCAG-TAATTT
1 TACCCTTCGAGGGTATTTTAGATAATTT
27738060 TAC
1 TAC
27738063 AACCTTTCCA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
27 44 0.92
28 4 0.08
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.42
Consensus pattern (28 bp):
TACCCTTCGAGGGTATTTTAGATAATTT
Found at i:27742006 original size:50 final size:50
Alignment explanation
Indices: 27741891--27742383 Score: 716
Period size: 50 Copynumber: 9.8 Consensus size: 50
27741881 GATAATAACA
* ** *
27741891 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * **
27741942 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
27741992 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
27742042 TGCCAACGCCATGTCCCAGACATGGTCTTACGTGAGACCTCTCATCTCGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * *
27742092 TGCCAGCGTCATGTCCCAGACATGATCTTACATGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
27742142 TGCCAACGCCATGTCCCAGACATGGTCTTACGTGAGACCTCTCATCTCGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * *
27742192 TGCCAGCGTCATGTCCCAGACATGATCTTACATGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
27742242 TGCCAACGCCATGTCCCAGACATGGTCTTACGTGAGACCTCTCATCTCGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * *
27742292 TGCCAGCGTCATGTCCCAGACATGATCTTACATGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
27742342 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
27742384 TTACCCAAAT
Statistics
Matches: 390, Mismatches: 52, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
50 357 0.92
51 33 0.08
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:27742070 original size:100 final size:100
Alignment explanation
Indices: 27741900--27742383 Score: 815
Period size: 100 Copynumber: 4.8 Consensus size: 100
27741890 ATGCCAAAGC
* ** * * * *
27741900 CATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGGTGCCCATGCCATGTCCCAGACAT
1 CATGTCCCAGACATGATCTTACATGGGA-CCTCTCATCTTGGTGCCAACGCCATGTCCCAGACAT
* * * * *
27741965 GGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGC
65 GGTCTTACGTGAGACCTCTCATCTCGATGCCAGCGT
* *
27742001 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATG
1 CATGTCCCAGACATGATCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGACATG
27742066 GTCTTACGTGAGACCTCTCATCTCGATGCCAGCGT
66 GTCTTACGTGAGACCTCTCATCTCGATGCCAGCGT
27742101 CATGTCCCAGACATGATCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGACATG
1 CATGTCCCAGACATGATCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGACATG
27742166 GTCTTACGTGAGACCTCTCATCTCGATGCCAGCGT
66 GTCTTACGTGAGACCTCTCATCTCGATGCCAGCGT
27742201 CATGTCCCAGACATGATCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGACATG
1 CATGTCCCAGACATGATCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGACATG
27742266 GTCTTACGTGAGACCTCTCATCTCGATGCCAGCGT
66 GTCTTACGTGAGACCTCTCATCTCGATGCCAGCGT
27742301 CATGTCCCAGACATGATCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGACATG
1 CATGTCCCAGACATGATCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGACATG
* *
27742366 GTCTTACATGGGACCTCT
66 GTCTTACGTGAGACCTCT
27742384 TTACCCAAAT
Statistics
Matches: 369, Mismatches: 14, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
100 341 0.92
101 28 0.08
ACGTcount: A:0.20, C:0.32, G:0.22, T:0.26
Consensus pattern (100 bp):
CATGTCCCAGACATGATCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGACATG
GTCTTACGTGAGACCTCTCATCTCGATGCCAGCGT
Found at i:27773394 original size:27 final size:26
Alignment explanation
Indices: 27773330--27773475 Score: 141
Period size: 27 Copynumber: 5.5 Consensus size: 26
27773320 AGGTATAACA
* **
27773330 GTCATTTTACCCTAT-GGGGTACTTCA
1 GTCATTTTACCCT-TCGGGGTATTTTG
*
27773356 GTCATTTTACCCTTTGGGGCTATTTTG
1 GTCATTTTACCCTTCGGGG-TATTTTG
* *
27773383 GTTATTTTACCCTTCGACGGTATTTTG
1 GTCATTTTACCCTTCG-GGGTATTTTG
* *
27773410 ATCATTTTACCCTTCGGGGGTATTTCG
1 GTCATTTTACCCTTC-GGGGTATTTTG
* * *
27773437 ATTATTTTACCCTCCGGAGGTATTTTG
1 GTCATTTTACCCTTCGG-GGTATTTTG
27773464 GTCATTTTACCC
1 GTCATTTTACCC
27773476 ACGAATCGCA
Statistics
Matches: 100, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
25 1 0.01
26 19 0.19
27 77 0.77
28 3 0.03
ACGTcount: A:0.16, C:0.21, G:0.19, T:0.44
Consensus pattern (26 bp):
GTCATTTTACCCTTCGGGGTATTTTG
Found at i:27773420 original size:54 final size:54
Alignment explanation
Indices: 27773357--27773475 Score: 168
Period size: 54 Copynumber: 2.2 Consensus size: 54
27773347 GGTACTTCAG
* * * *
27773357 TCATTTTACCCTTTGGGGCTATTTTGGTTATTTTACCCTTC-GACGGTATTTTGA
1 TCATTTTACCCTTCGGGGCTATTTCGATTATTTTACCCTCCGGA-GGTATTTTGA
* *
27773411 TCATTTTACCCTTCGGGGGTATTTCGATTATTTTACCCTCCGGAGGTATTTTGG
1 TCATTTTACCCTTCGGGGCTATTTCGATTATTTTACCCTCCGGAGGTATTTTGA
27773465 TCATTTTACCC
1 TCATTTTACCC
27773476 ACGAATCGCA
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
54 56 0.97
55 2 0.03
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.45
Consensus pattern (54 bp):
TCATTTTACCCTTCGGGGCTATTTCGATTATTTTACCCTCCGGAGGTATTTTGA
Found at i:27780419 original size:28 final size:28
Alignment explanation
Indices: 27780375--27780494 Score: 170
Period size: 28 Copynumber: 4.3 Consensus size: 28
27780365 CCTATACAGT
27780375 AACAGT-ACAGTGTGGGCCTTAGCCCAA
1 AACAGTAACAGTGTGGGCCTTAGCCCAA
* *
27780402 AACAGTAACACTGTGGGCCTTAGCGCAA
1 AACAGTAACAGTGTGGGCCTTAGCCCAA
*
27780430 AACAGTAACAATGTGGGCCTTAGCCCAA
1 AACAGTAACAGTGTGGGCCTTAGCCCAA
* * *
27780458 TACAGTAATAGTGTGGGTCTTAGCCCAA
1 AACAGTAACAGTGTGGGCCTTAGCCCAA
*
27780486 TACAGTAAC
1 AACAGTAAC
27780495 CAGTATAGTG
Statistics
Matches: 83, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
27 6 0.07
28 77 0.93
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (28 bp):
AACAGTAACAGTGTGGGCCTTAGCCCAA
Found at i:27780839 original size:26 final size:27
Alignment explanation
Indices: 27780799--27780890 Score: 98
Period size: 27 Copynumber: 3.4 Consensus size: 27
27780789 TTTCATCTCC
**
27780799 TAGGGGTATAACAGTCATTTT-CCCTT
1 TAGGGGTATTTCAGTCATTTTACCCTT
* *
27780825 TGGGGGTATTTCAGTCATTTTACCCTC
1 TAGGGGTATTTCAGTCATTTTACCCTT
*
27780852 TAAGGGTATTTC-GATCATTTTACCCTT
1 TAGGGGTATTTCAG-TCATTTTACCCTT
* *
27780879 CAAGGGTATTTC
1 TAGGGGTATTTC
27780891 GGTTGTAGTG
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
26 19 0.34
27 37 0.66
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.40
Consensus pattern (27 bp):
TAGGGGTATTTCAGTCATTTTACCCTT
Found at i:27791687 original size:268 final size:268
Alignment explanation
Indices: 27791210--27791745 Score: 1063
Period size: 268 Copynumber: 2.0 Consensus size: 268
27791200 TAGCAGTAAT
27791210 GCCTCTTCTCATCCCGTGATGGCAAACCTGTAAAAATTTAATTAAACTAAAATAAATAGAACTAC
1 GCCTCTTCTCATCCCGTGATGGCAAACCTGTAAAAATTTAATTAAACTAAAATAAATAGAACTAC
27791275 TAAGAAAAATAACCAACCTAAATTTCACCATTGATCTCCGGCAACGGAACCAAAAACTTGTTGCT
66 TAAGAAAAATAACCAACCTAAATTTCACCATTGATCTCCGGCAACGGAACCAAAAACTTGTTGCT
27791340 TGTAAAATGGTGTGTGATTTTTGTGCAAGTATACACATTGGTTCAAGTAATAAAGAGGTAAGTGA
131 TGTAAAATGGTGTGTGATTTTTGTGCAAGTATACACATTGGTTCAAGTAATAAAGAGGTAAGTGA
27791405 GTATTGTTCCCATGAGGATCGGATTGAGGCACAAAATTGGTCATGTTATCTTAATAAGGTCAAAT
196 GTATTGTTCCCATGAGGATCGGATTGAGGCACAAAATTGGTCATGTTATCTTAATAAGGTCAAAT
27791470 TAATGCTA
261 TAATGCTA
*
27791478 GCCTCTTCTCATCCCTTGATGGCAAACCTGTAAAAATTTAATTAAACTAAAATAAATAGAACTAC
1 GCCTCTTCTCATCCCGTGATGGCAAACCTGTAAAAATTTAATTAAACTAAAATAAATAGAACTAC
27791543 TAAGAAAAATAACCAACCTAAATTTCACCATTGATCTCCGGCAACGGAACCAAAAACTTGTTGCT
66 TAAGAAAAATAACCAACCTAAATTTCACCATTGATCTCCGGCAACGGAACCAAAAACTTGTTGCT
27791608 TGTAAAATGGTGTGTGATTTTTGTGCAAGTATACACATTGGTTCAAGTAATAAAGAGGTAAGTGA
131 TGTAAAATGGTGTGTGATTTTTGTGCAAGTATACACATTGGTTCAAGTAATAAAGAGGTAAGTGA
27791673 GTATTGTTCCCATGAGGATCGGATTGAGGCACAAAATTGGTCATGTTATCTTAATAAGGTCAAAT
196 GTATTGTTCCCATGAGGATCGGATTGAGGCACAAAATTGGTCATGTTATCTTAATAAGGTCAAAT
27791738 TAATGCTA
261 TAATGCTA
27791746 TAGTAAAATG
Statistics
Matches: 267, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
268 267 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (268 bp):
GCCTCTTCTCATCCCGTGATGGCAAACCTGTAAAAATTTAATTAAACTAAAATAAATAGAACTAC
TAAGAAAAATAACCAACCTAAATTTCACCATTGATCTCCGGCAACGGAACCAAAAACTTGTTGCT
TGTAAAATGGTGTGTGATTTTTGTGCAAGTATACACATTGGTTCAAGTAATAAAGAGGTAAGTGA
GTATTGTTCCCATGAGGATCGGATTGAGGCACAAAATTGGTCATGTTATCTTAATAAGGTCAAAT
TAATGCTA
Found at i:27796595 original size:43 final size:42
Alignment explanation
Indices: 27796524--27796685 Score: 130
Period size: 43 Copynumber: 3.8 Consensus size: 42
27796514 CAAAAAGCTC
* * *
27796524 ATACAATGTCAATGTCTCAGAC-GTGGTCTTACATGTAATCAA
1 ATACGATGCCAATGTCCCAGACAG-GGTCTTACATGTAATCAA
* * * * * *
27796566 ATAACGATGTCACTGTCCCAGATAGGGTCTTACGTGAAATCAT
1 AT-ACGATGCCAATGTCCCAGACAGGGTCTTACATGTAATCAA
* * *
27796609 ATATGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAA
1 ATACGATGCCAATGTCCCAGACAGGGTCTTACATGT-AA--TCAA
* * *
27796654 AT-CGATGCCAACGTCCCAAACATGGTCTTACA
1 ATACGATGCCAATGTCCCAGACAGGGTCTTACA
27796686 CGATATCACA
Statistics
Matches: 96, Mismatches: 19, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
42 28 0.29
43 35 0.36
44 28 0.29
45 5 0.05
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.27
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACAGGGTCTTACATGTAATCAA
Found at i:27803619 original size:43 final size:41
Alignment explanation
Indices: 27803527--27803675 Score: 140
Period size: 43 Copynumber: 3.6 Consensus size: 41
27803517 GTTACTCGGT
* ***
27803527 GGAATCAGCACTTAGCAACCACC-TTA-TATTTTGTGATACGG
1 GGAATCAGCACTTAGCAACC-CCTTTACAATCAAG-GATACGG
* *
27803568 GGAATCAGCACATAACAACCCCTTTCACAATCAAGGATACGG
1 GGAATCAGCACTTAGCAACCCCTTT-ACAATCAAGGATACGG
* ** *
27803610 TGGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTCGG
1 -GGAATCAGCACTTAGCAACC-CCTTTACAATCAAGGATACGG
*
27803653 GGAATCAACACTTAGCAACCCCT
1 GGAATCAGCACTTAGCAACCCCT
27803676 CGGGGAATCT
Statistics
Matches: 90, Mismatches: 13, Indels: 10
0.80 0.12 0.09
Matches are distributed among these distances:
40 2 0.02
41 23 0.26
42 27 0.30
43 33 0.37
44 5 0.06
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (41 bp):
GGAATCAGCACTTAGCAACCCCTTTACAATCAAGGATACGG
Found at i:27803678 original size:26 final size:26
Alignment explanation
Indices: 27803649--27803701 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27803639 AATCAATAAT
27803649 TCGGGGAATCAACACTTAGCAACCCC
1 TCGGGGAATCAACACTTAGCAACCCC
* *
27803675 TCGGGGAATCTACATTTAGCAACCCC
1 TCGGGGAATCAACACTTAGCAACCCC
27803701 T
1 T
27803702 TTTTTATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (26 bp):
TCGGGGAATCAACACTTAGCAACCCC
Found at i:27803720 original size:41 final size:41
Alignment explanation
Indices: 27803675--27803784 Score: 166
Period size: 41 Copynumber: 2.7 Consensus size: 41
27803665 TAGCAACCCC
* * * *
27803675 TCGGGGAATCTACATTTAGCAACCCCTTTTTTATTAGAGTT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTT
*
27803716 TCGGGGAATCTGCACTTAGCAATCCCTTTTTGATCAGAGTT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTT
*
27803757 TCGGGGAATCTGTACTTAGCAACCCCTT
1 TCGGGGAATCTGCACTTAGCAACCCCTT
27803785 ACATTCAATG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.35
Consensus pattern (41 bp):
TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTT
Found at i:27803875 original size:19 final size:20
Alignment explanation
Indices: 27803826--27803876 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 20
27803816 TTCAATCGGG
* *
27803826 AACCTTATTTTACAACATTT
1 AACCATATTTTTCAACATTT
*
27803846 TACCA-ACTTTTTCAA-ATTT
1 AACCATA-TTTTTCAACATTT
27803865 AACCATATTTTT
1 AACCATATTTTT
27803877 GTAATCTACA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.33, C:0.20, G:0.00, T:0.47
Consensus pattern (20 bp):
AACCATATTTTTCAACATTT
Found at i:27809599 original size:13 final size:12
Alignment explanation
Indices: 27809562--27809604 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
27809552 AAAAATTCTG
27809562 AAAATTTTATGG-
1 AAAATTTT-TGGA
*
27809574 AAAATTTTCGGA
1 AAAATTTTTGGA
*
27809586 AAAATTTTTGGG
1 AAAATTTTTGGA
27809598 AAAATTT
1 AAAATTT
27809605 ACAAAACTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
11 2 0.07
12 25 0.93
ACGTcount: A:0.42, C:0.02, G:0.16, T:0.40
Consensus pattern (12 bp):
AAAATTTTTGGA
Found at i:27814338 original size:16 final size:16
Alignment explanation
Indices: 27814317--27814348 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
27814307 ATTTTGTTGC
*
27814317 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
27814333 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
27814349 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:27827415 original size:16 final size:18
Alignment explanation
Indices: 27827394--27827430 Score: 60
Period size: 16 Copynumber: 2.2 Consensus size: 18
27827384 TTTGAGTTAA
27827394 AAAACTAA-ATTG-AAAT
1 AAAACTAATATTGAAAAT
27827410 AAAACTAATATTGAAAAT
1 AAAACTAATATTGAAAAT
27827428 AAA
1 AAA
27827431 CTCCTAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.42
17 4 0.21
18 7 0.37
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.24
Consensus pattern (18 bp):
AAAACTAATATTGAAAAT
Found at i:27829597 original size:19 final size:18
Alignment explanation
Indices: 27829573--27829608 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
27829563 TCTAAAAAAA
*
27829573 TTTAATATTACAATTTTAT
1 TTTAATAATA-AATTTTAT
27829592 TTTAATAATAAATTTTA
1 TTTAATAATAAATTTTA
27829609 ACTTTAAACG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTAATAATAAATTTTAT
Found at i:27829614 original size:19 final size:19
Alignment explanation
Indices: 27829573--27829615 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
27829563 TCTAAAAAAA
* *
27829573 TTTAATATTACAATTTTAT
1 TTTAATAATACAATTTTAC
27829592 TTTAATAATA-AATTTTAAC
1 TTTAATAATACAATTTT-AC
27829611 TTTAA
1 TTTAA
27829616 ACGCAATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTAATAATACAATTTTAC
Found at i:27834425 original size:44 final size:44
Alignment explanation
Indices: 27834362--27834450 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
27834352 CCAAGATACA
27834362 TAGTTTTAACATGCACTACCATTTACTAAAAAAATCGTATTTCT
1 TAGTTTTAACATGCACTACCATTTACTAAAAAAATCGTATTTCT
27834406 TAGTTTTAACATGCACTACCATTTACTAAAAAAATCGTATTTCT
1 TAGTTTTAACATGCACTACCATTTACTAAAAAAATCGTATTTCT
27834450 T
1 T
27834451 TCTCCTATCG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (44 bp):
TAGTTTTAACATGCACTACCATTTACTAAAAAAATCGTATTTCT
Found at i:27835770 original size:25 final size:25
Alignment explanation
Indices: 27835742--27835789 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
27835732 ATGTAAATAC
27835742 TGATGT-ATCTTTGCTTTATAATATA
1 TGATGTAAT-TTTGCTTTATAATATA
*
27835767 TGATTTAATTTTGCTTTATAATA
1 TGATGTAATTTTGCTTTATAATA
27835790 ATATATATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.29, C:0.06, G:0.10, T:0.54
Consensus pattern (25 bp):
TGATGTAATTTTGCTTTATAATATA
Found at i:27841670 original size:29 final size:29
Alignment explanation
Indices: 27841598--27841685 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
27841588 CCACCACTGA
* * **
27841598 TACATAGTACCTGATAAATATAACACTAG
1 TACAAAGTACCTGATAACTATAACACCGG
* * * *
27841627 CACAGAGTGCTTGATAACTATAACACCGG
1 TACAAAGTACCTGATAACTATAACACCGG
27841656 TACAAAGTACCTGATAACTATAATCACCGG
1 TACAAAGTACCTGATAACTATAA-CACCGG
27841686 CACATAATGT
Statistics
Matches: 47, Mismatches: 11, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
29 41 0.87
30 6 0.13
ACGTcount: A:0.40, C:0.22, G:0.15, T:0.24
Consensus pattern (29 bp):
TACAAAGTACCTGATAACTATAACACCGG
Found at i:27841702 original size:30 final size:28
Alignment explanation
Indices: 27841639--27841702 Score: 67
Period size: 30 Copynumber: 2.2 Consensus size: 28
27841629 CAGAGTGCTT
* *
27841639 GATAACTATAACACCGGTACAAAGTACCT
1 GATAACTATAACACCGGCACAAAGTA-CA
27841668 GATAACTATAATCACCGGCACATAATGT-CA
1 GATAACTATAA-CACCGGCACA-AA-GTACA
27841698 GATAA
1 GATAA
27841703 ATCCTAATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
29 11 0.37
30 15 0.50
31 2 0.07
32 2 0.07
ACGTcount: A:0.42, C:0.22, G:0.14, T:0.22
Consensus pattern (28 bp):
GATAACTATAACACCGGCACAAAGTACA
Found at i:27860699 original size:21 final size:20
Alignment explanation
Indices: 27860652--27860711 Score: 84
Period size: 21 Copynumber: 3.0 Consensus size: 20
27860642 AAGTCTAAGA
*
27860652 ACCATTCCATTTTCTTAGTT
1 ACCATTCCATTTACTTAGTT
*
27860672 ACCATTCCATTTACTTACTTT
1 ACCATTCCATTTACTTA-GTT
*
27860693 TCCATTCCATTTACTTAGT
1 ACCATTCCATTTACTTAGT
27860712 ATAAACTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 17 0.49
21 18 0.51
ACGTcount: A:0.22, C:0.27, G:0.03, T:0.48
Consensus pattern (20 bp):
ACCATTCCATTTACTTAGTT
Found at i:27864407 original size:40 final size:39
Alignment explanation
Indices: 27864322--27864414 Score: 114
Period size: 40 Copynumber: 2.3 Consensus size: 39
27864312 ATATTTATTG
* **
27864322 CCTGAATGCACATTCGTGCCCCTGTTTGTACTTCGGTAC
1 CCTGAATGCACATTCGTGCCCCTGTTAGTACTTCGACAC
* *
27864361 CACTGAATGCACATTCGTGCTCTTGTTAGTACTTCGACAC
1 C-CTGAATGCACATTCGTGCCCCTGTTAGTACTTCGACAC
*
27864401 TCCTGAAGGCACAT
1 -CCTGAATGCACAT
27864415 ACATGCTCCT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.02
40 44 0.96
41 1 0.02
ACGTcount: A:0.20, C:0.29, G:0.19, T:0.31
Consensus pattern (39 bp):
CCTGAATGCACATTCGTGCCCCTGTTAGTACTTCGACAC
Found at i:27879916 original size:44 final size:44
Alignment explanation
Indices: 27879868--27880095 Score: 131
Period size: 44 Copynumber: 5.0 Consensus size: 44
27879858 ATCTTAATCC
*
27879868 GCTCCGCTGTAATCTCAGAGAGATAGGATTACTAGCTTCAATTT
1 GCTCCGCTGTAATCTCAGAGAGATAAGATTACTAGCTTCAATTT
* * * *
27879912 GCTCCGCTGTGATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGAT
1 GCTCCGCTGTAATCTCAGAGAGATAAGATTACTAGCTTCAAT-T--T
* * * **
27879959 GCGATCTACTCTGCTGTAAAT-TCAGAGAGATAAGATCCT-TTA-TTTTAATCC
1 --G--CT-C-C-GCTGT-AATCTCAGAGAGATAAGAT--TACTAGCTTCAATTT
* * * * *
27880010 GCTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATCT
1 GCTCCGCTGTAATCTCAGAGAGATAAGATTACTAGCTTCAATTT
* * * *
27880054 GCTCCGCTATAATCTCA-AGGAAATAAGATTTCTGGCTTCAAT
1 GCTCCGCTGTAATCTCAGA-GAGATAAGATTACTAGCTTCAAT
27880096 CTAATGCGAC
Statistics
Matches: 140, Mismatches: 27, Indels: 34
0.70 0.13 0.17
Matches are distributed among these distances:
42 1 0.01
43 5 0.04
44 94 0.67
45 2 0.01
46 1 0.01
47 3 0.02
49 2 0.01
51 2 0.01
52 1 0.01
53 1 0.01
54 24 0.17
55 3 0.02
56 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (44 bp):
GCTCCGCTGTAATCTCAGAGAGATAAGATTACTAGCTTCAATTT
Found at i:27880069 original size:142 final size:142
Alignment explanation
Indices: 27879812--27880233 Score: 673
Period size: 142 Copynumber: 3.0 Consensus size: 142
27879802 GAGATAAGAC
* * * * *
27879812 CTGATGCGATCTACTCTACTGTAACTTCATAAAGATAAGATCCTTTATCTTAATCCGCTCCGCTG
1 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* * * *
27879877 TAATCTCAGAGAGATAGGATTACTAGCTTCAATTTGCTCCGCTGTGATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATT
27879942 TCTGGCTTCAAT
131 TCTGGCTTCAAT
* *
27879954 CTGATGCGATCTACTCTGCTGTAAATTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTA
1 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* *
27880019 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAAGGAAATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATT
27880084 TCTGGCTTCAAT
131 TCTGGCTTCAAT
* *
27880096 CTAATGCGACCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* ** *
27880161 TAATCTTAGGGAGATAGGATTACTAGCTTCAATCTGCTCTACTATAATCTCAGGGAGATAAGAAT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATT
27880226 TCTGGCTT
131 TCTGGCTT
27880234 TGATCTGCTC
Statistics
Matches: 257, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
142 257 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (142 bp):
CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATT
TCTGGCTTCAAT
Found at i:27880240 original size:44 final size:44
Alignment explanation
Indices: 27880147--27880247 Score: 114
Period size: 44 Copynumber: 2.3 Consensus size: 44
27880137 CCTTTATTTT
* * * *
27880147 AATCCGCTCCACTGTAATCTTAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTATAATCTCAGGGAGATAGAATTACTAGCTTC
* * *
27880191 AATCTGCTCTACTATAATCTCAGGGAGATAAGAATT-CTGGCTTT
1 AATCTGCTCCACTATAATCTCAGGGAGAT-AGAATTACTAGCTTC
*
27880235 GATCTGCTCCACT
1 AATCTGCTCCACT
27880248 GTTGCTTAGG
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 42 0.89
45 5 0.11
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (44 bp):
AATCTGCTCCACTATAATCTCAGGGAGATAGAATTACTAGCTTC
Found at i:27888240 original size:20 final size:20
Alignment explanation
Indices: 27888203--27888240 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
27888193 TTGCCTTAAA
* *
27888203 ATTCTCCTCAATCCATTTCC
1 ATTCTCCTCAAACAATTTCC
27888223 ATTCTCCTCAAACAATTT
1 ATTCTCCTCAAACAATTT
27888241 TGGTAATTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.34, G:0.00, T:0.39
Consensus pattern (20 bp):
ATTCTCCTCAAACAATTTCC
Found at i:27894363 original size:31 final size:31
Alignment explanation
Indices: 27894325--27894388 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
27894315 AAGATAAAAA
*
27894325 ATTGGGTTAAGTGCGATTGGTGTTCCAAGCT
1 ATTGGGTTAAGTGCGATTGGTGTTCCAAACT
*
27894356 ATTGGGTTAAGTGTGATTGGTGTTCCAAACT
1 ATTGGGTTAAGTGCGATTGGTGTTCCAAACT
27894387 AT
1 AT
27894389 GTGATTCTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.22, C:0.11, G:0.30, T:0.38
Consensus pattern (31 bp):
ATTGGGTTAAGTGCGATTGGTGTTCCAAACT
Found at i:27899368 original size:43 final size:43
Alignment explanation
Indices: 27899310--27899554 Score: 216
Period size: 43 Copynumber: 5.8 Consensus size: 43
27899300 TTAAATTTAG
* *
27899310 TGATAC-GGGGAATCAGCAAATAGCAACCCCTTTCACAATCAA
1 TGATACAGTGGAATCAGCACATAGCAACCCCTTTCACAATCAA
* * * *
27899352 TGATACAGTGGAATCAGCACTTAGCAACCACCTTT-ATATTCAG
1 TGATACAGTGGAATCAGCACATAGCAACC-CCTTTCACAATCAA
* * * *
27899395 TGATAGAG-GGAATCAACACACAGCAACCCCTTTCATAATCAAA
1 TGATACAGTGGAATCAGCACATAGCAACCCCTTTCACAATC-AA
* *
27899438 T-ATACGGTGGAATCAGCACATAGCAACCCCTTTCACAATAAAA
1 TGATACAGTGGAATCAGCACATAGCAACCCCTTTCACAAT-CAA
* * * * *
27899481 T-ATACGGTGGAATTAGCACTTAGCAACTACCTTT-AGAATCAA
1 TGATACAGTGGAATCAGCACATAGCAAC-CCCTTTCACAATCAA
* * * *
27899523 TAAT-CCGGGGAATCAGCACTTAGCAACCCCTT
1 TGATACAGTGGAATCAGCACATAGCAACCCCTT
27899555 GGGGAATCTG
Statistics
Matches: 168, Mismatches: 27, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
41 9 0.05
42 55 0.33
43 94 0.56
44 10 0.06
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (43 bp):
TGATACAGTGGAATCAGCACATAGCAACCCCTTTCACAATCAA
Found at i:27899420 original size:42 final size:41
Alignment explanation
Indices: 27899283--27899470 Score: 145
Period size: 43 Copynumber: 4.5 Consensus size: 41
27899273 CGGTGGATTT
* *
27899283 AGCACTTAGCAACCACC-TTAAATTTAGTGATACG-GGGAATC
1 AGCACATAGCAACC-CCTTTAAATTCAGTGATA-GAGGGAATC
* * *
27899324 AGCAAATAGCAACCCCTTTCACAA-TCAATGATACAGTGGAATC
1 AGCACATAGCAACCCCTTT-A-AATTCAGTGATAGAG-GGAATC
* *
27899367 AGCACTTAGCAACCACCTTTATATTCAGTGATAGAGGGAATC
1 AGCACATAGCAACC-CCTTTAAATTCAGTGATAGAGGGAATC
* * *
27899409 AACACACAGCAACCCCTTTCATAA-TCAAAT-ATACG-GTGGAATC
1 AGCACATAGCAACCCCTTT-A-AATTC-AGTGATA-GAG-GGAATC
27899452 AGCACATAGCAACCCCTTT
1 AGCACATAGCAACCCCTTT
27899471 CACAATAAAA
Statistics
Matches: 118, Mismatches: 17, Indels: 22
0.75 0.11 0.14
Matches are distributed among these distances:
40 2 0.02
41 19 0.16
42 34 0.29
43 58 0.49
44 5 0.04
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (41 bp):
AGCACATAGCAACCCCTTTAAATTCAGTGATAGAGGGAATC
Found at i:27899424 original size:85 final size:85
Alignment explanation
Indices: 27899283--27899470 Score: 258
Period size: 85 Copynumber: 2.2 Consensus size: 85
27899273 CGGTGGATTT
* * *
27899283 AGCACTTAGCAACCACC-TTAAATTTAGTGATACGGGGAATCAGCAAATAGCAACCCCTTTCACA
1 AGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAACAAACAGCAACCCCTTTCACA
27899347 ATC-AATGATACAGTGGAATC
66 ATCAAAT-ATACAGTGGAATC
* * *
27899367 AGCACTTAGCAACCACCTTTATATTCAGTGATA-GAGGGAATCAACACACAGCAACCCCTTTCAT
1 AGCACTTAGCAACCACCTTTAAATTCAGTGATACG-GGGAATCAACAAACAGCAACCCCTTTCAC
*
27899431 AATCAAATATACGGTGGAATC
65 AATCAAATATACAGTGGAATC
*
27899452 AGCACATAGCAACC-CCTTT
1 AGCACTTAGCAACCACCTTT
27899471 CACAATAAAA
Statistics
Matches: 93, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
84 23 0.25
85 67 0.72
86 3 0.03
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (85 bp):
AGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAACAAACAGCAACCCCTTTCACA
ATCAAATATACAGTGGAATC
Found at i:27899548 original size:128 final size:127
Alignment explanation
Indices: 27899312--27899554 Score: 328
Period size: 128 Copynumber: 1.9 Consensus size: 127
27899302 AAATTTAGTG
*
27899312 ATACGGGGAATCAGCAAATAGCAACCCCTTTCACAATCAATGATACAGTGGAATCAGCACTTAGC
1 ATACGGGGAATCAGCAAATAGCAACCCCTTTCACAATAAATGATACAGTGGAATCAGCACTTAGC
* * * *
27899377 AACCACCTTTATATTCAGTGATAGAGGGAATCAACACACAGCAACCCCTTTCATAATCAAAT
66 AACCACCTTTAGAATCAATAATAGAGGGAATCAACACACAGCAACCCCTTTCATAATCAAAT
* * *
27899439 ATACGGTGGAATCAGCACATAGCAACCCCTTTCACAATAAAAT-ATACGGTGGAATTAGCACTTA
1 ATACGG-GGAATCAGCAAATAGCAACCCCTTTCACAAT-AAATGATACAGTGGAATCAGCACTTA
* * * **
27899503 GCAACTACCTTTAGAATCAATAATCCG-GGGAATCAGCACTTAGCAACCCCTT
64 GCAACCACCTTTAGAATCAATAAT-AGAGGGAATCAACACACAGCAACCCCTT
27899555 GGGGAATCTG
Statistics
Matches: 100, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
127 6 0.06
128 90 0.90
129 4 0.04
ACGTcount: A:0.37, C:0.25, G:0.16, T:0.23
Consensus pattern (127 bp):
ATACGGGGAATCAGCAAATAGCAACCCCTTTCACAATAAATGATACAGTGGAATCAGCACTTAGC
AACCACCTTTAGAATCAATAATAGAGGGAATCAACACACAGCAACCCCTTTCATAATCAAAT
Found at i:27899558 original size:26 final size:26
Alignment explanation
Indices: 27899529--27899580 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
27899519 TCAATAATCC
27899529 GGGGAATCAGCACTTAGCAACCCCTT
1 GGGGAATCAGCACTTAGCAACCCCTT
*
27899555 GGGGAATCTGCACTTAGCAACCCCTT
1 GGGGAATCAGCACTTAGCAACCCCTT
27899581 TTTGATTAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.21
Consensus pattern (26 bp):
GGGGAATCAGCACTTAGCAACCCCTT
Found at i:27899653 original size:41 final size:40
Alignment explanation
Indices: 27899553--27899661 Score: 200
Period size: 40 Copynumber: 2.7 Consensus size: 40
27899543 TAGCAACCCC
27899553 TTGGGGAATCTGCACTTAGCAACCCCTTTTTGATTAGAGT
1 TTGGGGAATCTGCACTTAGCAACCCCTTTTTGATTAGAGT
*
27899593 TTAGGGAATCTGCACTTAGCAACCCCTTTTTGATTAGAGTT
1 TTGGGGAATCTGCACTTAGCAACCCCTTTTTGATTAGAG-T
27899634 TTGGGGAATCTGCACTTAGCAACCCCTT
1 TTGGGGAATCTGCACTTAGCAACCCCTT
27899662 ACATTCAATG
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
40 38 0.58
41 28 0.42
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (40 bp):
TTGGGGAATCTGCACTTAGCAACCCCTTTTTGATTAGAGT
Found at i:27899752 original size:19 final size:20
Alignment explanation
Indices: 27899703--27899753 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 20
27899693 TTCAATCGAG
* *
27899703 AACCTTATTTTACAACATTT
1 AACCATATTTTTCAACATTT
*
27899723 TACCA-ACTTTTTCAA-ATTT
1 AACCATA-TTTTTCAACATTT
27899742 AACCATATTTTT
1 AACCATATTTTT
27899754 GTAATCTACA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.33, C:0.20, G:0.00, T:0.47
Consensus pattern (20 bp):
AACCATATTTTTCAACATTT
Found at i:27904947 original size:11 final size:11
Alignment explanation
Indices: 27904931--27904955 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
27904921 GTTGGGCACC
27904931 AATAAGAAGAA
1 AATAAGAAGAA
27904942 AATAAGAAGAA
1 AATAAGAAGAA
27904953 AAT
1 AAT
27904956 GTATTTGCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (11 bp):
AATAAGAAGAA
Found at i:27906179 original size:40 final size:39
Alignment explanation
Indices: 27906135--27906375 Score: 252
Period size: 40 Copynumber: 6.1 Consensus size: 39
27906125 ATTATTGTTG
*
27906135 AATGCATATACGTGCCCCTGTTTGAACTTCGGTACCCCTA
1 AATGCACATACGTGCCCCTGTTT-AACTTCGGTACCCCTA
* * *
27906175 AATGCACATACGTGCCCCTATTTAAACTTCGGTACCCTTG
1 AATGCACATACGTGCCCCTGTTT-AACTTCGGTACCCCTA
* * * *
27906215 AATGCACATACGTGCCCCTTTTTGTACTTCAGTACCCCTG
1 AATGCACATACGTGCCCCTGTTT-AACTTCGGTACCCCTA
* * * * *
27906255 AATGCACATATGTGCCCCTATTTCTACTTTGGTACCCCTG
1 AATGCACATACGTGCCCCTGTTT-AACTTCGGTACCCCTA
*
27906295 AATGCACATACGTGCCCTTGTTTATACTTCGGTA-CCCTA
1 AATGCACATACGTGCCCCTGTTTA-ACTTCGGTACCCCTA
* * * *
27906334 AACGCACATACGTG-CCTTGTTTATACTTTGGTAACCCTA
1 AATGCACATACGTGCCCCTGTTTA-ACTTCGGTACCCCTA
27906373 AAT
1 AAT
27906376 CAAATAGTAT
Statistics
Matches: 175, Mismatches: 24, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
38 18 0.10
39 24 0.14
40 133 0.76
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.32
Consensus pattern (39 bp):
AATGCACATACGTGCCCCTGTTTAACTTCGGTACCCCTA
Found at i:27906270 original size:80 final size:80
Alignment explanation
Indices: 27906132--27906349 Score: 305
Period size: 80 Copynumber: 2.7 Consensus size: 80
27906122 ATAATTATTG
* * *
27906132 TTGAATGCATATACGTGCCCCTGTTTGAACTTCGGTACCCCTAAATGCACATACGTGCCCCTATT
1 TTGAATGCACATACGTGCCCCTTTTTGTACTTCGGTACCCCTAAATGCACATACGTGCCCCTATT
27906197 TAAACTTCGGTACCC
66 TAAACTTCGGTACCC
* * *
27906212 TTGAATGCACATACGTGCCCCTTTTTGTACTTCAGTACCCCTGAATGCACATATGTGCCCCTATT
1 TTGAATGCACATACGTGCCCCTTTTTGTACTTCGGTACCCCTAAATGCACATACGTGCCCCTATT
** *
27906277 TCTACTTTGGTACCC
66 TAAACTTCGGTACCC
* * *
27906292 CTGAATGCACATACGTG-CCCTTGTTTATACTTCGGTA-CCCTAAACGCACATACGTGCC
1 TTGAATGCACATACGTGCCCCTT-TTTGTACTTCGGTACCCCTAAATGCACATACGTGCC
27906350 TTGTTTATAC
Statistics
Matches: 122, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
79 23 0.19
80 99 0.81
ACGTcount: A:0.22, C:0.30, G:0.16, T:0.31
Consensus pattern (80 bp):
TTGAATGCACATACGTGCCCCTTTTTGTACTTCGGTACCCCTAAATGCACATACGTGCCCCTATT
TAAACTTCGGTACCC
Found at i:27911971 original size:26 final size:26
Alignment explanation
Indices: 27911935--27911987 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27911925 TTATATAAAA
27911935 AGGGGTCGCTAAGTGTAGATTCCCCG
1 AGGGGTCGCTAAGTGTAGATTCCCCG
* *
27911961 AGGGGTTGCTAAGTGTTGATTCCCCG
1 AGGGGTCGCTAAGTGTAGATTCCCCG
27911987 A
1 A
27911988 ATTATTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.19, C:0.21, G:0.34, T:0.26
Consensus pattern (26 bp):
AGGGGTCGCTAAGTGTAGATTCCCCG
Found at i:27912199 original size:85 final size:85
Alignment explanation
Indices: 27911961--27912202 Score: 358
Period size: 85 Copynumber: 2.8 Consensus size: 85
27911951 AGATTCCCCG
* * * * * * * *
27911961 AGGGGTTGCTAAGTGTTGATTCCCCGAATTATTGATTTTAAAGGTGGTTGCTAAGTGCTGATTTC
1 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
**
27912026 ACTATATATTTGATTGTGAA
66 ACCGTATATTTGATTGTGAA
*
27912046 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTTATTCC
1 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
* *
27912111 ACCGTATATTTTATTTTGAA
66 ACCGTATATTTGATTGTGAA
*
27912131 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAATGCTGATTCC
1 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
27912196 ACCGTAT
66 ACCGTAT
27912203 CACTAAATAT
Statistics
Matches: 142, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
85 142 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (85 bp):
AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
ACCGTATATTTGATTGTGAA
Found at i:27912202 original size:43 final size:43
Alignment explanation
Indices: 27911964--27912326 Score: 307
Period size: 43 Copynumber: 8.6 Consensus size: 43
27911954 TTCCCCGAGG
* * * * * *
27911964 GGTTGCTAAGTGTTGATTCC-CCGAATTATTGATTTTAAAGGT
1 GGTTGCTAAGTGCTGATTCCACCGTATCACTGAATATAAAGGT
* ** * * *
27912006 GGTTGCTAAGTGCTGATTTCACTATAT-ATTTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCCACCGTATCA-CTGAATAT-AAAGGT
*
27912049 GGTTGCTATGTGCTGATTCC-CCGTATCACTGAATATAAAGGT
1 GGTTGCTAAGTGCTGATTCCACCGTATCACTGAATATAAAGGT
* * * * *
27912091 GGTTGCTAAGTGCTTATTCCACCGTAT-ATTTTATTTTGAAAGG-
1 GGTTGCTAAGTGCTGATTCCACCGTATCA-CTGAATAT-AAAGGT
*
27912134 GGTTGCTATGTGCTGATTCC-CCGTATCACTGAATATAAAGGT
1 GGTTGCTAAGTGCTGATTCCACCGTATCACTGAATATAAAGGT
* *
27912176 GGTTGCTAAATGCTGATTCCACCGTATCACTAAATATAAAGGT
1 GGTTGCTAAGTGCTGATTCCACCGTATCACTGAATATAAAGGT
* * * * * *
27912219 GGTTGCTAAATACTGATTCCATCGTATC-TTTAACTGTAAAAGG-
1 GGTTGCTAAGTGCTGATTCCACCGTATCACTGAA-TAT-AAAGGT
* * *
27912262 GGTTGCTATGTGCTGATTCC-TCGTATCACTGAAT-TTAAGGT
1 GGTTGCTAAGTGCTGATTCCACCGTATCACTGAATATAAAGGT
* *
27912303 GGTTACTAAGTGCTGAATCCACCG
1 GGTTGCTAAGTGCTGATTCCACCG
27912327 AGTAACGGAT
Statistics
Matches: 262, Mismatches: 43, Indels: 32
0.78 0.13 0.09
Matches are distributed among these distances:
40 4 0.02
41 28 0.11
42 88 0.34
43 127 0.48
44 15 0.06
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (43 bp):
GGTTGCTAAGTGCTGATTCCACCGTATCACTGAATATAAAGGT
Found at i:27912212 original size:128 final size:127
Alignment explanation
Indices: 27912044--27912326 Score: 399
Period size: 128 Copynumber: 2.2 Consensus size: 127
27912034 TTTGATTGTG
* * * * *
27912044 AAAGG-GGTTGCTATGTGCTGATTCC-CCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTTA
1 AAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCACTAAATATAAAGGTGGTTGCTAAATACTGA
* * * *
27912107 TTCCACCGTATATTTTATTTTGAAAGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATAT
66 TTCCACCGTATATTTAACTGTAAAAGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAAT-T
*
27912170 AAAGGTGGTTGCTAAATGCTGATTCCACCGTATCACTAAATATAAAGGTGGTTGCTAAATACTGA
1 AAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCACTAAATATAAAGGTGGTTGCTAAATACTGA
* * *
27912235 TTCCATCGTATCTTTAACTGTAAAAGGGGTTGCTATGTGCTGATTCCTCGTATCACTGAATT
66 TTCCACCGTATATTTAACTGTAAAAGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATT
* * *
27912297 TAAGGTGGTTACTAAGTGCTGAATCCACCG
1 AAAGGTGGTTGCTAAGTGCTGATTCCACCG
27912327 AGTAACGGAT
Statistics
Matches: 138, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
126 5 0.04
127 45 0.33
128 88 0.64
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (127 bp):
AAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCACTAAATATAAAGGTGGTTGCTAAATACTGA
TTCCACCGTATATTTAACTGTAAAAGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATT
Found at i:27912223 original size:85 final size:84
Alignment explanation
Indices: 27911961--27912318 Score: 316
Period size: 85 Copynumber: 4.2 Consensus size: 84
27911951 AGATTCCCCG
* * * * * * *
27911961 AGGGGTTGCTAAGTGTTGATTCCCCGAATTATTGATTTTAAAGGTGGTTGCTAAGTGCTGATTTC
1 AGGGGTTGCTAAGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
** * *
27912026 ACTATATATTTGATTGTGAA
66 ACCGTATATCTGAAT-TGAA
* *
27912046 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTTATTCC
1 AGGGGTTGCTAAGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
* * *
27912111 ACCGTATATTTTATTTTGAA
66 ACCGTATATCTGA-ATTGAA
* *
27912131 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAATGCTGATTCC
1 AGGGGTTGCTAAGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
*
27912196 ACCGTATCA-CTAAATAT-AA
66 ACCGTAT-ATCTGAAT-TGAA
* * * * * * *
27912215 AGGTGGTTGCTAAATACTGATTCCATCGTATC-TTTAACTGTAAAAGG-GGTTGCTATGTGCTGA
1 AGG-GGTTGCTAAGTGCTGATTCC-CCGTATCACTGAA-TAT-AAAGGTGGTTGCTAAGTGCTGA
* *
27912278 TTCC-TCGTATCA-CTGAATT-TA
62 TTCCACCGTAT-ATCTGAATTGAA
*
27912299 AGGTGGTTACTAAGTGCTGA
1 AGG-GGTTGCTAAGTGCTGA
27912319 ATCCACCGAG
Statistics
Matches: 234, Mismatches: 32, Indels: 15
0.83 0.11 0.05
Matches are distributed among these distances:
84 25 0.11
85 175 0.75
86 29 0.12
87 5 0.02
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.36
Consensus pattern (84 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
ACCGTATATCTGAATTGAA
Found at i:27922132 original size:25 final size:27
Alignment explanation
Indices: 27922104--27922164 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
27922094 AGGGGTAAAA
*
27922104 TGGTAATTTTA-CCATAG-GGGTATTT
1 TGGTCATTTTACCCATAGAGGGTATTT
* *
27922129 TGGTCATTTTACCCTTCGAGGGTATTT
1 TGGTCATTTTACCCATAGAGGGTATTT
27922156 TGGTCATTT
1 TGGTCATTT
27922165 AACAACCTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
25 10 0.32
26 4 0.13
27 17 0.55
ACGTcount: A:0.18, C:0.13, G:0.23, T:0.46
Consensus pattern (27 bp):
TGGTCATTTTACCCATAGAGGGTATTT
Found at i:27928046 original size:17 final size:18
Alignment explanation
Indices: 27928032--27928115 Score: 80
Period size: 19 Copynumber: 4.4 Consensus size: 18
27928022 ATAATCTTCG
27928032 AGGATATGCAATCTTAGA
1 AGGATATGCAATCTTAGA
*
27928050 TATGATATGCAATCTTAGA
1 -AGGATATGCAATCTTAGA
*
27928069 TATGATATATGCAATCTTAGA
1 -A-G-GATATGCAATCTTAGA
* *
27928090 TATGATATGTAATCTTAGA
1 -AGGATATGCAATCTTAGA
27928109 A-GATATG
1 AGGATATG
27928116 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
17 6 0.11
18 1 0.02
19 33 0.58
21 17 0.30
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (18 bp):
AGGATATGCAATCTTAGA
Found at i:27928058 original size:19 final size:19
Alignment explanation
Indices: 27928034--27928108 Score: 123
Period size: 19 Copynumber: 3.8 Consensus size: 19
27928024 AATCTTCGAG
27928034 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
27928053 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
27928072 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
27928093 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
27928109 AGATATGATT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
19 34 0.64
21 19 0.36
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:27928080 original size:21 final size:21
Alignment explanation
Indices: 27928035--27928097 Score: 112
Period size: 21 Copynumber: 3.1 Consensus size: 21
27928025 ATCTTCGAGG
27928035 ATATGCAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
27928054 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
27928075 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
27928096 AT
1 AT
27928098 GTAATCTTAG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.45
21 23 0.55
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:27928127 original size:23 final size:22
Alignment explanation
Indices: 27928047--27928131 Score: 81
Period size: 21 Copynumber: 4.0 Consensus size: 22
27928037 ATGCAATCTT
*
27928047 AGATATGATATGCAATCTTAG-
1 AGATATGATATGTAATCTTAGA
* *
27928068 ATATGAT-ATATGCAATCTT---
1 AGAT-ATGATATGTAATCTTAGA
27928087 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
27928109 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
27928132 GATTTAATTT
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
18 2 0.04
19 14 0.26
21 15 0.28
22 10 0.19
23 13 0.24
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:27928141 original size:22 final size:23
Alignment explanation
Indices: 27928097--27928141 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
27928087 AGATATGATA
*
27928097 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
27928120 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
27928142 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:27928690 original size:25 final size:25
Alignment explanation
Indices: 27928640--27928690 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
27928630 TCCATTTTCT
*
27928640 TTATTTTTTATTAATTAGTTTTTTA
1 TTATTTTTTATTAATTAGTTTATTA
27928665 TTATTTTTT-TTATATTTAG-TTATTA
1 TTATTTTTTATTA-A-TTAGTTTATTA
27928690 T
1 T
27928691 AAAAAATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 3 0.13
25 16 0.70
26 4 0.17
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.73
Consensus pattern (25 bp):
TTATTTTTTATTAATTAGTTTATTA
Found at i:27928780 original size:27 final size:27
Alignment explanation
Indices: 27928733--27928811 Score: 72
Period size: 26 Copynumber: 2.9 Consensus size: 27
27928723 TCATATACGC
*
27928733 ATATTTATTT-TTTGTAGTATAATATAA
1 ATATTTATTTATTTATAGTAT-ATATAA
* *
27928760 ATATTTATTTATTTAT-TTATATGTAA
1 ATATTTATTTATTTATAGTATATATAA
* * *
27928786 TTATTTTTTTATCTATATGTATATAT
1 ATATTTATTTATTTATA-GTATATAT
27928812 TTATTTTAGT
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
26 18 0.44
27 13 0.32
28 10 0.24
ACGTcount: A:0.33, C:0.01, G:0.05, T:0.61
Consensus pattern (27 bp):
ATATTTATTTATTTATAGTATATATAA
Found at i:27928815 original size:26 final size:26
Alignment explanation
Indices: 27928733--27928818 Score: 74
Period size: 22 Copynumber: 3.4 Consensus size: 26
27928723 TCATATACGC
* * *
27928733 ATATTTATTTTTTGTA-GTATAATATAA
1 ATATTTATTTTTT-TATCTAT-ATGTAT
* *
27928760 ATATTTATTTATTTATTTATATG--T
1 ATATTTATTTTTTTATCTATATGTAT
27928784 A-A-TTATTTTTTTATCTATATGTAT
1 ATATTTATTTTTTTATCTATATGTAT
27928808 ATATTTATTTT
1 ATATTTATTTT
27928819 AGTATACATA
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
22 17 0.35
23 1 0.02
24 3 0.06
25 1 0.02
26 11 0.23
27 15 0.31
ACGTcount: A:0.31, C:0.01, G:0.05, T:0.63
Consensus pattern (26 bp):
ATATTTATTTTTTTATCTATATGTAT
Found at i:27933072 original size:6 final size:6
Alignment explanation
Indices: 27933063--27933095 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
27933053 TAAAAGTGAT
27933063 AAAAAG AAAAAG AAAAAG AAAAAG -AAAAG AAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAA
27933096 TGGAGAGGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:27934607 original size:176 final size:176
Alignment explanation
Indices: 27934299--27934763 Score: 614
Period size: 176 Copynumber: 2.6 Consensus size: 176
27934289 GCAGATCAGT
* * * * *
27934299 GAAGATAGCAGGTCCTGTCTTC-CTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTGTC
1 GAAGAT-GCAGATCTTGTCTTCAC-ATAATGGTCGTGAAGTAGATCGAAGATAGCAGATCTTGTC
* * * * *
27934361 TTCCCATATTAGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTATTCATTTATTGGCGTGAAGT
64 TTCCTATATTGGT-GCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGACGTGAAGT
* *
27934426 AGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATC
128 AGATCGAAAATAGCAGGTCCTGTCTTCCTATATTAGTAGGAAGTGGATC
** * ***
27934475 GAAGATGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCCAATCTT
1 GAAGATGCAGATCTTGTCTTCACATAATGGTCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTT
*
27934539 CCTATATTGGTAGCGAAATAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGACGTGAAGTAG
66 CCTATATTGGT-GCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGACGTGAAGTAG
27934604 ATCGAAAATAGCAGGTCCTGTCTTCCTATATTAGTAGGAAGTGGATC
130 ATCGAAAATAGCAGGTCCTGTCTTCCTATATTAGTAGGAAGTGGATC
* * *
27934651 GAAGATGCAGATCTTGTCTTCCCATAATGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
1 GAAGATGCAGATCTTGTCTTCACATAATGGTCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTT
* * * * * *
27934716 CATGTATTGGTGTGAAGTAGATCGAAGATAGTAGATCTTGCCTTCATG
66 CCTATATTGGTGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATG
27934764 CACCGACAGC
Statistics
Matches: 251, Mismatches: 34, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
174 1 0.00
175 34 0.14
176 178 0.71
177 38 0.15
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (176 bp):
GAAGATGCAGATCTTGTCTTCACATAATGGTCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTT
CCTATATTGGTGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGACGTGAAGTAGA
TCGAAAATAGCAGGTCCTGTCTTCCTATATTAGTAGGAAGTGGATC
Found at i:27934763 original size:44 final size:45
Alignment explanation
Indices: 27934299--27934762 Score: 473
Period size: 44 Copynumber: 10.5 Consensus size: 45
27934289 GCAGATCAGT
* * * *
27934299 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATC
1 GAAGATAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATC
** * * *
27934343 GAAGAT-GCAGATCTTGTCTTCCCATATTAGTGGCGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATC
* * * *
27934387 GAAGAAAGCAGATCTTGTATTCATTTATTGG-CGTGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATC
* * * *
27934431 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATC
1 GAAGATAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATC
* *
27934475 GAAGAT-GCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATC
*** * * *
27934518 GAAGATAGCAGATCCAATCTTCCTATATTGGTAGCGAAATAGATC
1 GAAGATAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATC
* *
27934563 GAAGAAAGCAGATCTTGTCTTCATGTATT-G-ACGTGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCATATATTGGTA-GTGAAGTAGATC
* * * * * *
27934607 GAAAATAGCAGGTCCTGTCTTCCTATATTAGTAG-GAAGTGGATC
1 GAAGATAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATC
** * *
27934651 GAAGAT-GCAGATCTTGTCTTCCCATAATGGTGGTGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATC
* *
27934695 GAAGAAAGCAGATCTTGTCTTCATGTATTGGT-GTGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATC
* *
27934739 GAAGATAGTAGATCTTGCCTTCAT
1 GAAGATAGCAGATCTTGTCTTCAT
27934763 GCACCGACAG
Statistics
Matches: 342, Mismatches: 67, Indels: 22
0.79 0.16 0.05
Matches are distributed among these distances:
42 1 0.00
43 79 0.23
44 185 0.54
45 76 0.22
46 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (45 bp):
GAAGATAGCAGATCTTGTCTTCATATATTGGTAGTGAAGTAGATC
Found at i:27934952 original size:44 final size:44
Alignment explanation
Indices: 27934884--27935089 Score: 222
Period size: 44 Copynumber: 4.7 Consensus size: 44
27934874 TGACCTCAGC
* *
27934884 CCTATCTCCCTGGTCAGCAATGGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * *
27934928 CCTATCTCCCTGGTCAACAGTGGAATAGGGTGAAGATTGAGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * * *
27934972 TCTATCTTCCTGGGT-AGTAGTGGAAT-GGATTGAAGATTGT-AGGT
1 CCTATCTCCCT-GGTCAGCAGTGGAATAGG-TTGAAGATTGTGA-AT
* * *
27935016 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGTAGATCGTGAAC
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* *
27935060 CCTATCTCCCTGAGT-AGTAGTGGAGTAGGT
1 CCTATCTCCCTG-GTCAGCAGTGGAATAGGT
27935090 GGAAAATAGC
Statistics
Matches: 134, Mismatches: 21, Indels: 14
0.79 0.12 0.08
Matches are distributed among these distances:
43 6 0.04
44 120 0.90
45 8 0.06
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (44 bp):
CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
Found at i:27935617 original size:44 final size:43
Alignment explanation
Indices: 27935396--27935624 Score: 146
Period size: 44 Copynumber: 5.3 Consensus size: 43
27935386 ATGACAAATT
* * * ** *
27935396 TTATCTCCCTGAAGTTGCAGT-AGAGCAGATTAAAGTCGATAATC
1 TTATCTCTCTGAAGTTGCAGTGA-AGCGGATTAAA-ACCTTAGTC
* * *
27935440 CTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAAACCTTGGGTC
1 TTATCTCTCTGAAGTTGCAGTGAAGCGGATTAAAACCTT-AGTC
* * * ** *
27935484 TTATCTCTCTGAAGTTTCAGAG-AGC--A-GAACGCATCTAGTC
1 TTATCTCTCTGAAGTTGCAGTGAAGCGGATTAAAACCT-TAGTC
* * * * *
27935524 TTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAAGAAAC-TAATC
1 TTATCTCTCTGAAGTTGCAGTGAAGCGGA-TTAA-AACCTTAGTC
* * *
27935568 CTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAAACCTTGGGTC
1 TTATCTCTCTGAAGTTGCAGTGAAGCGGATTAAAACCTT-AGTC
27935612 TTATCTCTCTGAA
1 TTATCTCTCTGAA
27935625 ATTACAGTAG
Statistics
Matches: 140, Mismatches: 34, Indels: 22
0.71 0.17 0.11
Matches are distributed among these distances:
40 27 0.19
41 5 0.04
42 3 0.02
43 10 0.07
44 92 0.66
45 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (43 bp):
TTATCTCTCTGAAGTTGCAGTGAAGCGGATTAAAACCTTAGTC
Found at i:27935624 original size:128 final size:129
Alignment explanation
Indices: 27935396--27935647 Score: 409
Period size: 128 Copynumber: 2.0 Consensus size: 129
27935386 ATGACAAATT
* **
27935396 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGTCGATAATCCTATCTCCCTGAAGTTGCAGT
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAAGTAAATAATCCTATCTCCCTGAAGTTGCAGT
* *
27935461 GAAGCGGATTAAAACCTTGGGTCTTATCTCTCTGAAGTTTCAG-AGAGCAGAACGCATCTAGTC
66 GAAGCGGATTAAAACCTTGGGTCTTATCTCTCTGAAATTACAGTAGAGCAGAACGCATCTAGTC
* *
27935524 TTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAAG-AAACTAATCCTATCTCCCTGAAGTTGCAG
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAAGTAAA-TAATCCTATCTCCCTGAAGTTGCAG
*
27935588 TGAAGCGGATTAAAACCTTGGGTCTTATCTCTCTGAAATTACAGTAGAGCAGATCGCATC
65 TGAAGCGGATTAAAACCTTGGGTCTTATCTCTCTGAAATTACAGTAGAGCAGAACGCATC
27935648 AAATTCATCT
Statistics
Matches: 114, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
127 1 0.01
128 99 0.87
129 14 0.12
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (129 bp):
TTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAAGTAAATAATCCTATCTCCCTGAAGTTGCAGT
GAAGCGGATTAAAACCTTGGGTCTTATCTCTCTGAAATTACAGTAGAGCAGAACGCATCTAGTC
Done.