Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50190067
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Warning! 915496 characters in sequence are not A, C, G, or T
File 96 of 161
Found at i:30330024 original size:31 final size:30
Alignment explanation
Indices: 30329989--30330155 Score: 127
Period size: 31 Copynumber: 5.4 Consensus size: 30
30329979 GAATCACCCC
* * *
30329989 ATGTTTACTATCTCAACGAACTATCTGTTCT
1 ATGTTTATTGTCTCAAC-AACTATCTATTCT
* * * * *
30330020 ATGTTTATTATCTTAGCACACTATTTTTTCT
1 ATGTTTATTGTCTCAACA-ACTATCTATTCT
* *
30330051 ATGTTTATTGTCTCAACAAACTATTTACTCT
1 ATGTTTATTGTCTCAAC-AACTATCTATTCT
* *
30330082 ATGTTTATTGTCCCAACAGACTATCTATCCT
1 ATGTTTATTGTCTCAACA-ACTATCTATTCT
* * * * * *
30330113 ATGTTTACTGTCCCAGCGGACTACCTGTTCT
1 ATGTTTATTGTCTCAAC-AACTATCTATTCT
30330144 ATGTTTATTGTC
1 ATGTTTATTGTC
30330156 CCAGCGGACT
Statistics
Matches: 111, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
30 2 0.02
31 108 0.97
32 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.11, T:0.44
Consensus pattern (30 bp):
ATGTTTATTGTCTCAACAACTATCTATTCT
Found at i:30330105 original size:62 final size:62
Alignment explanation
Indices: 30329989--30330124 Score: 146
Period size: 62 Copynumber: 2.2 Consensus size: 62
30329979 GAATCACCCC
* * ** ** * * * *
30329989 ATGTTTACTATCTCAACGAACTATCTGTTCTATGTTTATTATCTTAGCACACTATTTTTTCT
1 ATGTTTACTGTCTCAACAAACTATCTACTCTATGTTTATTATCCCAACACACTATCTATCCT
* * * *
30330051 ATGTTTATTGTCTCAACAAACTATTTACTCTATGTTTATTGTCCCAACAGACTATCTATCCT
1 ATGTTTACTGTCTCAACAAACTATCTACTCTATGTTTATTATCCCAACACACTATCTATCCT
30330113 ATGTTTACTGTC
1 ATGTTTACTGTC
30330125 CCAGCGGACT
Statistics
Matches: 59, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.25, C:0.21, G:0.09, T:0.46
Consensus pattern (62 bp):
ATGTTTACTGTCTCAACAAACTATCTACTCTATGTTTATTATCCCAACACACTATCTATCCT
Found at i:30333707 original size:2 final size:2
Alignment explanation
Indices: 30333700--30333750 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
30333690 GGAAGGGAAA
30333700 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
30333742 AG AG AG AG A
1 AG AG AG AG A
30333751 ATGAAAAAAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:30337990 original size:129 final size:129
Alignment explanation
Indices: 30337759--30338015 Score: 356
Period size: 129 Copynumber: 2.0 Consensus size: 129
30337749 TCTACAGTCT
* * *
30337759 GGTGAATGCCCAAACAATGCCTGGTATTCCAAAGCAACCTCCCCATTGACATCCTGTTTTTTTTC
1 GGTGAATGCCCAAACAATGCCTGCTATTCCAAAGCAACCTCCCCATTGACATCCTCTTTTTTATC
* * * * *
30337824 GATTCCTTTAACCTGACACTCGGAGAAGCCATCTTGAATGCAGACTGAAGAATCTCTCCCATCA
66 AATTCCCTTAACCTGACACTCAGAGAAACCATCTTGAACGCAGACTGAAGAATCTCTCCCATCA
* *
30337888 GGTGAATGTCCAAACAATGCCTCGCT-TTCCAAAGCAACGCT-TCCATTGACATCCTCTTTTTTA
1 GGTGAATGCCCAAACAATGCCT-GCTATTCCAAAGCAAC-CTCCCCATTGACATCCTCTTTTTTA
* * * *
30337951 TCAATTCCCTTCACCTGACACTCAGAGAAACCATTTTGAACGCAGATTGAAGTATCTCTCCCATC
64 TCAATTCCCTTAACCTGACACTCAGAGAAACCATCTTGAACGCAGACTGAAGAATCTCTCCCATC
30338016 TGATTGTTGA
Statistics
Matches: 112, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
129 108 0.96
130 4 0.04
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (129 bp):
GGTGAATGCCCAAACAATGCCTGCTATTCCAAAGCAACCTCCCCATTGACATCCTCTTTTTTATC
AATTCCCTTAACCTGACACTCAGAGAAACCATCTTGAACGCAGACTGAAGAATCTCTCCCATCA
Found at i:30345664 original size:263 final size:262
Alignment explanation
Indices: 30345185--30345679 Score: 613
Period size: 263 Copynumber: 1.9 Consensus size: 262
30345175 GACTCACCAC
*
30345185 ACCAACTTAGGGATTTTATTAATAATATAGATATACAATTAAAATGTACATAATAAAATTAAAAG
1 ACCAACTTAGGGATTTTATTAATAATATAAATATACAATTAAAATGTACATAATAAAATTAAAAG
* * ** *
30345250 GTATAAGTAAACTAAAATAAAGTCTAGGTTAGATGATAAATTTAAAGTTTTTTTTTAATATAATT
66 GTATAAGTAAACCAAAATAAAGTCTAGGTTAAATGATAAATTTAAAG-ACTTTTCTAATATAATT
* * * * *
30345315 AGCATTGGTTTAAATCCCACAATACACATTTTTATTTTTTTATTAAAAATATTAAAGTCCCCCGA
130 AGCATTGGTTCAAATCCCACAATACACATTTTTATTTTTTAATTAAAAAGACTAAAGTCCCCCAA
* * *
30345380 ACAATTTAGCTTATTTTAAATTCAG-AAGGTCATTTTTTGTTCGAGTTAGTGCTTGATTGACTCG
195 ACAATATAACTTATGTTAAATT-AGTAAGGTCATTTTTTGTTCGAGTTAGTGCTTGATTGACTCG
30345444 TGAT
259 TGAT
* * * *
30345448 ACCAACTT-GGGAATTTTATTAATAGTATAAATATACCATTAAAATGTGCATAATGAAATTAAAA
1 ACCAACTTAGGG-ATTTTATTAATAATATAAATATACAATTAAAATGTACATAATAAAATTAAAA
* * * * *
30345512 TGTATAAGTAAGCCAAAATCAAGTCTTGGTTAAATGATAAATTTAAA-ACTTTTCTAATGTAATT
65 GGTATAAGTAAACCAAAATAAAGTCTAGGTTAAATGATAAATTTAAAGACTTTTCTAATATAATT
* * * *
30345576 AGCA-TGAGTTCAAATTCCACAATACACGCATTTTTA-TTTTTAATTAAAAGGACTAAAGTGTCT
130 AGCATTG-GTTCAAATCCCACAATACA--CATTTTTATTTTTTAATTAAAAAGACTAAAGT-CCC
* * * *
30345639 TCAAATAATATAATTTATGTTAAATTTGTAAGGTCATTTTT
191 CCAAACAATATAACTTATGTTAAATTAGTAAGGTCATTTTT
30345680 GTAATTTCCA
Statistics
Matches: 195, Mismatches: 31, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
260 2 0.01
261 34 0.17
262 23 0.12
263 136 0.70
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.38
Consensus pattern (262 bp):
ACCAACTTAGGGATTTTATTAATAATATAAATATACAATTAAAATGTACATAATAAAATTAAAAG
GTATAAGTAAACCAAAATAAAGTCTAGGTTAAATGATAAATTTAAAGACTTTTCTAATATAATTA
GCATTGGTTCAAATCCCACAATACACATTTTTATTTTTTAATTAAAAAGACTAAAGTCCCCCAAA
CAATATAACTTATGTTAAATTAGTAAGGTCATTTTTTGTTCGAGTTAGTGCTTGATTGACTCGTG
AT
Found at i:30351732 original size:37 final size:37
Alignment explanation
Indices: 30351682--30352648 Score: 1880
Period size: 37 Copynumber: 26.1 Consensus size: 37
30351672 TTATTACGAA
* * * *
30351682 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30351719 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
*
30351756 GTCTTACCCGGATAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30351793 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30351830 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30351867 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30351904 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30351941 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30351978 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30352015 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30352052 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30352089 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30352126 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30352163 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30352200 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30352237 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30352274 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30352311 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30352348 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30352385 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30352422 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30352459 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30352496 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30352533 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
*
30352570 GTCTTACCCGGATAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30352607 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
30352644 GTCTT
1 GTCTT
30352649 TAGAGCTCGG
Statistics
Matches: 922, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 922 1.00
ACGTcount: A:0.27, C:0.35, G:0.19, T:0.20
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
Found at i:30352854 original size:47 final size:47
Alignment explanation
Indices: 30352769--30352895 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 47
30352759 CTTCGGGACT
* * * *
30352769 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
30352816 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* *
30352863 TATCTCATATATGCA-TGTTCACATCCATCACAT
1 TATCACATATATACACT-TTCACATCCATCACAT
30352896 AGAATCCTAA
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
46 1 0.01
47 66 0.99
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
Found at i:30353901 original size:23 final size:23
Alignment explanation
Indices: 30353875--30353921 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
30353865 GCTACTTTCT
30353875 CTTTCCCCTATCCGAAATTTGTG
1 CTTTCCCCTATCCGAAATTTGTG
*
30353898 CTTTCCCTTATCCGAAATTTGTG
1 CTTTCCCCTATCCGAAATTTGTG
30353921 C
1 C
30353922 CCCTTTTTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.30, G:0.13, T:0.40
Consensus pattern (23 bp):
CTTTCCCCTATCCGAAATTTGTG
Found at i:30356611 original size:22 final size:21
Alignment explanation
Indices: 30356593--30356655 Score: 54
Period size: 23 Copynumber: 2.8 Consensus size: 21
30356583 AGGGTTTGTA
30356593 AATTGGGCTCAGGTAGTTTTAG
1 AATTGGGCT-AGGTAGTTTTAG
* * *
30356615 GATTGGGCTAGGTTGGTTTAGGG
1 AATTGGGCTAGGTAGTTTTA--G
*
30356638 TATTGGGCTAGGTTAGTT
1 AATTGGGCTAGG-TAGTT
30356656 GGGTTTTGGG
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
21 9 0.28
22 8 0.25
23 12 0.38
24 3 0.09
ACGTcount: A:0.17, C:0.06, G:0.38, T:0.38
Consensus pattern (21 bp):
AATTGGGCTAGGTAGTTTTAG
Found at i:30356664 original size:21 final size:20
Alignment explanation
Indices: 30356617--30356727 Score: 91
Period size: 21 Copynumber: 5.2 Consensus size: 20
30356607 AGTTTTAGGA
*
30356617 TTGGGCTAGGTTGGTTTAGGGTA
1 TTGGGCTAGGTT-G-TT-GGGTT
30356640 TTGGGCTAGGTTAGTTGGGTT
1 TTGGGCTAGGTT-GTTGGGTT
* **
30356661 TTGGGTTTA-GTTGTTAGGGGA
1 TTGGG-CTAGGTTGTT-GGGTT
30356682 TTGGGCTAGGTTAGTTGGGTT
1 TTGGGCTAGGTT-GTTGGGTT
*
30356703 TTGGGTTTA-GTTGTTGGGTT
1 TTGGG-CTAGGTTGTTGGGTT
30356723 TTGGG
1 TTGGG
30356728 GGTGGCCCAA
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
20 18 0.24
21 34 0.46
22 9 0.12
23 13 0.18
ACGTcount: A:0.10, C:0.03, G:0.43, T:0.44
Consensus pattern (20 bp):
TTGGGCTAGGTTGTTGGGTT
Found at i:30356687 original size:42 final size:42
Alignment explanation
Indices: 30356632--30356717 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
30356622 CTAGGTTGGT
*
30356632 TTAGGGTATTGGGCTAGGTTAGTTGGGTTTTGGGTTTAGTTG
1 TTAGGGGATTGGGCTAGGTTAGTTGGGTTTTGGGTTTAGTTG
30356674 TTAGGGGATTGGGCTAGGTTAGTTGGGTTTTGGGTTTAGTTG
1 TTAGGGGATTGGGCTAGGTTAGTTGGGTTTTGGGTTTAGTTG
30356716 TT
1 TT
30356718 GGGTTTTGGG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.12, C:0.02, G:0.41, T:0.45
Consensus pattern (42 bp):
TTAGGGGATTGGGCTAGGTTAGTTGGGTTTTGGGTTTAGTTG
Found at i:30357471 original size:73 final size:72
Alignment explanation
Indices: 30357242--30358156 Score: 1381
Period size: 73 Copynumber: 12.6 Consensus size: 72
30357232 TGGCATGTGA
* * * * * *
30357242 TCTTGA-GCCCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAAACAAAAACT-AAAGATAC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAAT-TTTGAAAACAGAAATTGAAA-ATAC
30357305 CTCAACATGTG
64 CTCAAC--GTG
* * * *
30357316 AAC-TGAGGCTCAACTCACTTT-TCGCAATATGAGTTGATTGTTTTGACAACAGAAATTGAAATT
1 -TCTTGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAAAT
*
30357379 ACCTCAGCGTG
62 ACCTCAACGTG
** *
30357390 TCCCGAGGCTCAACTCATGTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAAATACC
*
30357455 TCAATGTG
65 TCAACGTG
* * *
30357463 TCTTGAGGCTCAACTCATTTCTCGTAATATGGGTTGAATTTTGAAAACAGAAATTGAAATTACCT
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCT
*
30357528 CAATGTG
66 CAACGTG
* *
30357535 TCTTGAGGCTCAACTCATTTCTCGTAATATGAATTGAATTTTGAAAAGCAGAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAAATACC
30357600 TCAACGTG
65 TCAACGTG
* * * *
30357608 TCTTGAGGCTCAACTCATTTCTCGCAATAAGAGTTGAGTTTTGAAAACAGAAATTGAAATTATCT
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCT
30357673 CAACGTG
66 CAACGTG
30357680 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACAGAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATTGAAAATACC
30357745 TCAACGTG
65 TCAACGTG
* *
30357753 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTGAAAACAGAAATTGAAATTACCT
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCT
30357818 CAACGTG
66 CAACGTG
* *
30357825 TCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTGAATTTTGAAAAGTAGAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAAATACC
30357890 TCAACGTG
65 TCAACGTG
*
30357898 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAAAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAAATACC
30357963 TCAACGTG
65 TCAACGTG
*
30357971 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAAAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAAATACC
30358036 TCAACGTG
65 TCAACGTG
*
30358044 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCT
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCT
30358109 CAACGTG
66 CAACGTG
30358116 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTT
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
30358157 CCTTGGAAAG
Statistics
Matches: 780, Mismatches: 49, Indels: 26
0.91 0.06 0.03
Matches are distributed among these distances:
71 5 0.01
72 273 0.35
73 415 0.53
74 35 0.04
75 25 0.03
76 23 0.03
77 4 0.01
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (72 bp):
TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCT
CAACGTG
Found at i:30357536 original size:145 final size:145
Alignment explanation
Indices: 30357242--30358156 Score: 1446
Period size: 145 Copynumber: 6.3 Consensus size: 145
30357232 TGGCATGTGA
* * * * * *
30357242 TCTTGA-GCCCAACTCATTTCTCGCAATATGAATTGACTCTTT-AAAAACAAAAACT-AAAGATA
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAAT-TTTGAAAAGCAGAAATTGAAA-ATA
* * *
30357304 CCTCAACATGTGAAC-TGAGGCTCAACTCACTTT-TCGCAATATGAGTTGATTGTTTTGACAACA
64 CCTCAAC--GTG-TCTTGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAACA
*
30357367 GAAATTGAAATTACCTCAGCGTG
123 GAAATTGAAATTACCTCAACGTG
** *
30357390 TCCCGAGGCTCAACTCATGTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
* * *
30357455 TCAATGTGTCTTGAGGCTCAACTCATTTCTCGTAATATGGGTTGAATTTTGAAAACAGAAATTGA
66 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
*
30357520 AATTACCTCAATGTG
131 AATTACCTCAACGTG
* *
30357535 TCTTGAGGCTCAACTCATTTCTCGTAATATGAATTGAATTTTGAAAAGCAGAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
* *
30357600 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATAAGAGTTGAGTTTTGAAAACAGAAATTGA
66 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
*
30357665 AATTATCTCAACGTG
131 AATTACCTCAACGTG
*
30357680 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACAGAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
*
30357745 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTGAAAACAGAAATTGA
66 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
30357810 AATTACCTCAACGTG
131 AATTACCTCAACGTG
* *
30357825 TCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTGAATTTTGAAAAGTAGAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
*
30357890 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAAAAATTG
66 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTG
*
30357955 AAAATACCTCAACGTG
130 AAATTACCTCAACGTG
*
30357971 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAAAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
30358036 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
66 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
30358101 AATTACCTCAACGTG
131 AATTACCTCAACGTG
30358116 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTT
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
30358157 CCTTGGAAAG
Statistics
Matches: 716, Mismatches: 45, Indels: 16
0.92 0.06 0.02
Matches are distributed among these distances:
144 5 0.01
145 479 0.67
146 144 0.20
147 31 0.04
148 7 0.01
149 47 0.07
150 3 0.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (145 bp):
TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACC
TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
AATTACCTCAACGTG
Found at i:30357623 original size:218 final size:216
Alignment explanation
Indices: 30357242--30358156 Score: 1381
Period size: 218 Copynumber: 4.2 Consensus size: 216
30357232 TGGCATGTGA
* * * * *
30357242 TCTTGA-GCCCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAAACAAAAACT-AAAGATAC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAAT-TTTGAAAACAAAAATTGAAA-ATAC
* * *
30357305 CTCAACATGTGAAC-TGAGGCTCAACTCACTTT-TCGCAATATGAGTTGATTGTTTTGACAACAG
64 CTCAAC--GTG-TCTTGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAACAG
* * ** *
30357368 AAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATGTCTCGCAATATGAGTTGAATTTTG
123 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
*
30357433 AAAAGCAGAAATTGAAAATACCTCAATGTG
188 AAAA-CAGAAATTGAAAATACCTCAACGTG
* * * *
30357463 TCTTGAGGCTCAACTCATTTCTCGTAATATGGGTTGAATTTTGAAAACAGAAATTGAAATTACCT
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAAATACCT
* * *
30357528 CAATGTGTCTTGAGGCTCAACTCATTTCTCGTAATATGAATTGAATTTTGAAAAGCAGAAATTGA
66 CAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGA
* *
30357593 AAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATAAGAGTTGAGTTTTGAAAACAG
130 AAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAG
* *
30357658 AAATTGAAATTATCTCAACGTG
195 AAATTGAAAATACCTCAACGTG
*
30357680 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACAGAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAAAAATTGAAAATACC
*
30357745 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTGAAAACAGAAATTGA
65 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
* * *
30357810 AATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTGAATTTTGAAAAGTA
130 AAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CA
30357875 GAAATTGAAAATACCTCAACGTG
194 GAAATTGAAAATACCTCAACGTG
30357898 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAAAAATTGAAAATACC
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAAAAATTGAAAATACC
*
30357963 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAAAAATTG
65 TCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTG
30358028 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACA
129 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACA
*
30358093 GAAATTGAAATTACCTCAACGTG
194 GAAATTGAAAATACCTCAACGTG
30358116 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTT
1 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
30358157 CCTTGGAAAG
Statistics
Matches: 639, Mismatches: 46, Indels: 22
0.90 0.07 0.03
Matches are distributed among these distances:
217 148 0.23
218 334 0.52
219 100 0.16
221 27 0.04
222 30 0.05
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (216 bp):
TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAAATACCT
CAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAA
AATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGA
AATTGAAAATACCTCAACGTG
Found at i:30369548 original size:14 final size:14
Alignment explanation
Indices: 30369529--30369556 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
30369519 GAATCTGGTG
30369529 GATTCCATTTTCTT
1 GATTCCATTTTCTT
30369543 GATTCCATTTTCTT
1 GATTCCATTTTCTT
30369557 CTTGAGTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
GATTCCATTTTCTT
Found at i:30379170 original size:66 final size:66
Alignment explanation
Indices: 30379064--30379195 Score: 255
Period size: 66 Copynumber: 2.0 Consensus size: 66
30379054 CTGTTGTTGT
30379064 ATGCAAAATCAACCAACGGTAAAAATCTCTCCCAATTACCTTCGAACTCTAAAACGCAACATCAA
1 ATGCAAAATCAACCAACGGTAAAAATCTCTCCCAATTACCTTCGAACTCTAAAACGCAACATCAA
30379129 A
66 A
*
30379130 ATGCAAAATCAACCAACGGTAAAAGTCTCTCCCAATTACCTTCGAACTCTAAAACGCAACATCAA
1 ATGCAAAATCAACCAACGGTAAAAATCTCTCCCAATTACCTTCGAACTCTAAAACGCAACATCAA
30379195 A
66 A
30379196 GTATATCTTC
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.43, C:0.29, G:0.08, T:0.20
Consensus pattern (66 bp):
ATGCAAAATCAACCAACGGTAAAAATCTCTCCCAATTACCTTCGAACTCTAAAACGCAACATCAA
A
Found at i:30385658 original size:25 final size:25
Alignment explanation
Indices: 30385630--30385723 Score: 122
Period size: 25 Copynumber: 3.8 Consensus size: 25
30385620 TCCTGTACAT
30385630 GTATGCTCATACGAGCTGT-GAGTCG
1 GTATGCTCATACGAGCTGTAGA-TCG
30385655 GTATGCTCACT-CGAGCTGTAGATCG
1 GTATGCTCA-TACGAGCTGTAGATCG
30385680 GTATGCTC-TCACGAGCTGTAGATCG
1 GTATGCTCAT-ACGAGCTGTAGATCG
* *
30385705 GTATGCTCACACAAGCTGT
1 GTATGCTCATACGAGCTGT
30385724 GGGTCAGAAC
Statistics
Matches: 62, Mismatches: 2, Indels: 10
0.84 0.03 0.14
Matches are distributed among these distances:
23 1 0.02
25 58 0.94
26 3 0.05
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (25 bp):
GTATGCTCATACGAGCTGTAGATCG
Found at i:30392882 original size:43 final size:43
Alignment explanation
Indices: 30392782--30392884 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
30392772 TTGGTTTTCA
*
30392782 GCACTAAGTGTGCGAGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
30392825 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
30392868 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
30392885 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:30392901 original size:29 final size:29
Alignment explanation
Indices: 30392866--30392939 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
30392856 GTTGTGAGAT
* *
30392866 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
30392895 TGGCACTAAGTGTACGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
30392924 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
30392940 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:30393419 original size:40 final size:40
Alignment explanation
Indices: 30393375--30393478 Score: 118
Period size: 40 Copynumber: 2.6 Consensus size: 40
30393365 GAGTTACTAA
* *
30393375 ATCCGGGCTAAATTCTGAAGAGCATTCGTGCTAGTGAGGT
1 ATCCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGAGAT
* * * **
30393415 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGAGAT
** *
30393455 ATCCGGGCTAGGTCCCGAAGAGCA
1 ATCCGGGCTAAATTCCGAAGAGCA
30393479 ATCATGCTGG
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGAGAT
Found at i:30393487 original size:40 final size:40
Alignment explanation
Indices: 30393414--30393490 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
30393404 GCTAGTGAGG
* * *
30393414 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTGGTGTTA
1 TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTGTTA
* *
30393454 TATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTG
30393491 ACATGTATTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTGTTA
Found at i:30396013 original size:13 final size:13
Alignment explanation
Indices: 30395995--30396019 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30395985 TAATGGTATA
30395995 TTGAATCCATGAC
1 TTGAATCCATGAC
30396008 TTGAATCCATGA
1 TTGAATCCATGA
30396020 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:30397144 original size:51 final size:51
Alignment explanation
Indices: 30397079--30397190 Score: 206
Period size: 51 Copynumber: 2.2 Consensus size: 51
30397069 GAAATTAAAG
30397079 CTTAATGAGTCTAGTTTCTTATAAAAGAAACCGTGTAAGAAAATTAATTTC
1 CTTAATGAGTCTAGTTTCTTATAAAAGAAACCGTGTAAGAAAATTAATTTC
30397130 CTTAATGAGTCTAGTTTCTTATAAAAGAAACCGTGTAAGAAAATTAATTTC
1 CTTAATGAGTCTAGTTTCTTATAAAAGAAACCGTGTAAGAAAATTAATTTC
*
30397181 CGATAATGAG
1 C-TTAATGAG
30397191 ATATTTAAAG
Statistics
Matches: 59, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
51 52 0.88
52 7 0.12
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (51 bp):
CTTAATGAGTCTAGTTTCTTATAAAAGAAACCGTGTAAGAAAATTAATTTC
Found at i:30397847 original size:47 final size:48
Alignment explanation
Indices: 30397755--30398165 Score: 555
Period size: 47 Copynumber: 8.6 Consensus size: 48
30397745 TATTTGAATA
* *
30397755 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
30397804 AATGTGAAAGTG-TATATATGTGATAAGGCCTTATAGCCGATGTGATG
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
30397851 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
30397900 AATGTGAAAGTGTATATATATGTGATAAGG--TTATAGCCGATGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
30397947 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
30397996 AATGTGAAAGTG-TATATACGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
30398043 AATATGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
30398090 AATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
30398139 GATGTGAAAGTG-TATAAATGTGATAAG
1 AATGTGAAAGTGATATATATGTGATAAG
30398166 TCCCGAAGGG
Statistics
Matches: 326, Mismatches: 30, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
47 187 0.57
49 139 0.43
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (48 bp):
AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:30397876 original size:96 final size:97
Alignment explanation
Indices: 30397755--30398165 Score: 579
Period size: 96 Copynumber: 4.3 Consensus size: 97
30397745 TATTTGAATA
* *
30397755 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-TAT
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATAT
30397819 ATATGTGATAAGGCCTTATAGCCGATGTGATG
66 ATATGTGATAAGGCCTTATAGCCGATGTGATG
*
30397851 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATA
30397916 TATATGTGATAAGG--TTATAGCCGATGTGATG
65 TATATGTGATAAGGCCTTATAGCCGATGTGATG
*
30397947 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TAT
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATAT
* * * *
30398011 ATACGTGATAGGGCCTAATGGCCGATGTGATG
66 ATATGTGATAAGGCCTTATAGCCGATGTGATG
* *
30398043 AATATGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATA
* * * * * *
30398106 TATATGTGACAGGGCC-GAGTGGCCAACGTGATG
65 TATATGTGATAAGGCCTTA-TAGCCGATGTGATG
*
30398139 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
30398166 TCCCGAAGGG
Statistics
Matches: 289, Mismatches: 17, Indels: 18
0.89 0.05 0.06
Matches are distributed among these distances:
94 59 0.20
95 1 0.00
96 210 0.73
97 1 0.00
98 18 0.06
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (97 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATAT
ATATGTGATAAGGCCTTATAGCCGATGTGATG
Found at i:30398109 original size:143 final size:144
Alignment explanation
Indices: 30397759--30398163 Score: 586
Period size: 143 Copynumber: 2.8 Consensus size: 144
30397749 TGAATAAATG
* *
30397759 TGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATA
1 TGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
* * *
30397822 TGTGATAAGGCCTTATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAAT
65 TGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCTAAT
*
30397887 GGCCGATGTGATGAATG
128 GGCCGATGTGATGAATA
* *
30397904 TGAAAGTGTATATATATGTGATAAGG--TTATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
*
30397967 TGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGG
65 TGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGG
30398032 CCGATGTGATGAATA
130 CCGATGTGATGAATA
*
30398047 TGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATAT
1 TGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
* * * * * * *
30398111 GTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATA
66 GTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
30398164 AGTCCCGAAG
Statistics
Matches: 236, Mismatches: 20, Indels: 10
0.89 0.08 0.04
Matches are distributed among these distances:
141 16 0.07
143 150 0.64
145 70 0.30
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (144 bp):
TGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
GTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGC
CGATGTGATGAATA
Found at i:30398340 original size:37 final size:37
Alignment explanation
Indices: 30398284--30398362 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
30398274 CCGAGCTCTA
* * *
30398284 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
30398321 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
30398358 AAGAC
1 AAGAC
30398363 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:30403522 original size:42 final size:42
Alignment explanation
Indices: 30403414--30403523 Score: 193
Period size: 42 Copynumber: 2.6 Consensus size: 42
30403404 CTATAACTCA
* *
30403414 CCATACGCATGTGTGCCAGGCCATATATGCTTCGAAGTAACC
1 CCATACGCCTGTGTGCCAGGCCATGTATGCTTCGAAGTAACC
30403456 CCATACGCCTGTGTGCCAGGCCATGTATGCTTCGAAGTAACC
1 CCATACGCCTGTGTGCCAGGCCATGTATGCTTCGAAGTAACC
*
30403498 CCATACGCCTGTGTGTCAGGCCATGT
1 CCATACGCCTGTGTGCCAGGCCATGT
30403524 GCTAGGTCGT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 65 1.00
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.25
Consensus pattern (42 bp):
CCATACGCCTGTGTGCCAGGCCATGTATGCTTCGAAGTAACC
Found at i:30406370 original size:37 final size:37
Alignment explanation
Indices: 30406320--30406398 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
30406310 TTATTACGAA
* * *
30406320 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
30406357 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
30406394 GTCTT
1 GTCTT
30406399 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:30406643 original size:47 final size:47
Alignment explanation
Indices: 30406519--30406831 Score: 421
Period size: 47 Copynumber: 6.5 Consensus size: 47
30406509 CTTCGGGACA
* * * * * *
30406519 TATCACATTTATACACTTTCACA-TCTATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTC-ATCACATCGGCCATTAGGCCT
* *
30406566 TGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
30406615 TATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
30406662 TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
30406709 TATCACATATATATACACTTTCACATTCATCACATCGGCTATAAGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
30406758 TATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
30406805 TATCACATATATATACACTTTCACATT
1 TATCAC--ATATATACACTTTCACATT
30406832 TATTCAAATA
Statistics
Matches: 237, Mismatches: 22, Indels: 12
0.87 0.08 0.04
Matches are distributed among these distances:
47 136 0.57
49 99 0.42
50 2 0.01
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
Found at i:30406721 original size:96 final size:96
Alignment explanation
Indices: 30406519--30406831 Score: 447
Period size: 96 Copynumber: 3.3 Consensus size: 96
30406509 CTTCGGGACA
* * * * *
30406519 TATCACAT-T-TATACACTTTCACA-TCTATCACGTTGGCCACTCGGCCCTGTCACATATATATA
1 TATCACATATATATACACTTTCACATTC-ATCACATCGGCCATTAGGCCCTATCAC--ATATATA
*
30406581 CACTTCCACATTCATCACATCGGCCATTAGGCCT
63 CACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
30406615 TATCAC--ATATATACACTTTCATATTCATCACATCGGCCATTAGGCCCTATCACGTATATACAC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
30406678 TTTCACATTCATCACATCGGCCATTAGGCCT
66 TTTCACATTCATCACATCGGCCATTAGGCCT
* * *
30406709 TATCACATATATATACACTTTCACATTCATCACATCGGCTATAAGGCCTTATCACATATATACAC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
* *
30406774 TTTCACATTCATCACATTGGCCATTCGGCCT
66 TTTCACATTCATCACATCGGCCATTAGGCCT
30406805 TATCACATATATATACACTTTCACATT
1 TATCACATATATATACACTTTCACATT
30406832 TATTCAAATA
Statistics
Matches: 197, Mismatches: 15, Indels: 10
0.89 0.07 0.05
Matches are distributed among these distances:
94 45 0.23
95 1 0.01
96 149 0.76
97 2 0.01
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (96 bp):
TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCT
Found at i:30406777 original size:143 final size:144
Alignment explanation
Indices: 30406519--30406831 Score: 459
Period size: 143 Copynumber: 2.2 Consensus size: 144
30406509 CTTCGGGACA
* * * * *
30406519 TATCACATTTATACACTTTCACA-TCTATCACGTTGGCCACTCGGCCCTGTCACATATATATACA
1 TATCACATATATACACTTTCACATTCTATCACATCGGCCACTAGGCCCTATCACATATATATACA
* *
30406583 CTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCATATTCATCACAT
66 CTTCCACATTCATCACATCGGCCATAAGGCCTTATCACATATATACACTTTCACATTCATCACAT
30406648 CGGCCATTAGGCCC
131 CGGCCATTAGGCCC
* * *
30406662 TATCACGTATATACACTTTCACATTC-ATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 TATCACATATATACACTTTCACATTCTATCACATCGGCCACTAGGCCCTATCACATATATATACA
* *
30406726 CTTTCACATTCATCACATCGGCTATAAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 CTTCCACATTCATCACATCGGCCATAAGGCCTTATCACATATATACACTTTCACATTCATCACAT
* * *
30406791 TGGCCATTCGGCCT
131 CGGCCATTAGGCCC
30406805 TATCACATATATATACACTTTCACATT
1 TATCAC--ATATATACACTTTCACATT
30406832 TATTCAAATA
Statistics
Matches: 151, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
143 131 0.87
144 2 0.01
145 18 0.12
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (144 bp):
TATCACATATATACACTTTCACATTCTATCACATCGGCCACTAGGCCCTATCACATATATATACA
CTTCCACATTCATCACATCGGCCATAAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCC
Found at i:30416089 original size:45 final size:44
Alignment explanation
Indices: 30416036--30416129 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 44
30416026 TAATAACTTC
* *
30416036 TTGAACCGCTCCCATGCCTGATATAAAGATTCTTCATCAAGTTT
1 TTGAACCGCTCACATGCCTCATATAAAGATTCTTCATCAAGTTT
30416080 TTGANACCGCTCACATGCCTCATATAAAGATTCTTCATCAAGTTT
1 TTGA-ACCGCTCACATGCCTCATATAAAGATTCTTCATCAAGTTT
*
30416125 CTGAA
1 TTGAA
30416130 ATGAAGTGAT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 5 0.11
45 41 0.89
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.33
Consensus pattern (44 bp):
TTGAACCGCTCACATGCCTCATATAAAGATTCTTCATCAAGTTT
Found at i:30418278 original size:27 final size:27
Alignment explanation
Indices: 30418248--30418302 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
30418238 TATTATAAAA
30418248 TTAA-TTAAAATTAAATATTTTAATAAT
1 TTAAGTTAAAATTAAATATTTT-ATAAT
* * *
30418275 TTAAGTTCAATTTAATTATTTTATAAT
1 TTAAGTTAAAATTAAATATTTTATAAT
30418302 T
1 T
30418303 ATATTATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 10 0.42
28 14 0.58
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (27 bp):
TTAAGTTAAAATTAAATATTTTATAAT
Found at i:30419133 original size:12 final size:12
Alignment explanation
Indices: 30419116--30419140 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
30419106 ATTTGGGAAG
30419116 TATAAGGAAAAT
1 TATAAGGAAAAT
30419128 TATAAGGAAAAT
1 TATAAGGAAAAT
30419140 T
1 T
30419141 CACCAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.16, T:0.28
Consensus pattern (12 bp):
TATAAGGAAAAT
Found at i:30431509 original size:20 final size:20
Alignment explanation
Indices: 30431484--30431611 Score: 98
Period size: 20 Copynumber: 6.3 Consensus size: 20
30431474 CGTCTGTGCA
30431484 GTGCCTCTGTTTGCACTTTG
1 GTGCCTCTGTTTGCACTTTG
**
30431504 GTGCCTCTAATTGCACATTT-
1 GTGCCTCTGTTTGCAC-TTTG
* * *
30431524 GTACCTCTTTTTGCACTTCG
1 GTGCCTCTGTTTGCACTTTG
* * *
30431544 ATGCCTCTGATTACACATTT-
1 GTGCCTCTGTTTGCAC-TTTG
* * *
30431564 GTGCCTCTGTCTACACTTCG
1 GTGCCTCTGTTTGCACTTTG
30431584 GTGCCTCTGTTATGCATCTTTG
1 GTGCCTCTGTT-TGCA-CTTTG
*
30431606 ATGCCT
1 GTGCCT
30431612 TTGGTGTGGT
Statistics
Matches: 82, Mismatches: 20, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
19 4 0.05
20 61 0.74
21 8 0.10
22 9 0.11
ACGTcount: A:0.13, C:0.27, G:0.18, T:0.41
Consensus pattern (20 bp):
GTGCCTCTGTTTGCACTTTG
Found at i:30431592 original size:40 final size:40
Alignment explanation
Indices: 30431484--30431592 Score: 146
Period size: 40 Copynumber: 2.7 Consensus size: 40
30431474 CGTCTGTGCA
* * *
30431484 GTGCCTCTGTTTGCACTTTGGTGCCTCTAATTGCACATTT
1 GTGCCTCTGTTTGCACTTCGGTGCCTCTGATTACACATTT
* * *
30431524 GTACCTCTTTTTGCACTTCGATGCCTCTGATTACACATTT
1 GTGCCTCTGTTTGCACTTCGGTGCCTCTGATTACACATTT
* *
30431564 GTGCCTCTGTCTACACTTCGGTGCCTCTG
1 GTGCCTCTGTTTGCACTTCGGTGCCTCTG
30431593 TTATGCATCT
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.13, C:0.28, G:0.18, T:0.40
Consensus pattern (40 bp):
GTGCCTCTGTTTGCACTTCGGTGCCTCTGATTACACATTT
Found at i:30432856 original size:11 final size:11
Alignment explanation
Indices: 30432838--30432867 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
30432828 CGCATAGGTT
30432838 GCATGTTTTTG
1 GCATGTTTTTG
*
30432849 GTATGTTTTTG
1 GCATGTTTTTG
30432860 GCATGTTT
1 GCATGTTT
30432868 AGATGTGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.10, C:0.07, G:0.27, T:0.57
Consensus pattern (11 bp):
GCATGTTTTTG
Found at i:30439346 original size:66 final size:66
Alignment explanation
Indices: 30439272--30439403 Score: 264
Period size: 66 Copynumber: 2.0 Consensus size: 66
30439262 TCATGCATTC
30439272 ACATTCCATATACTCATCAATAGGACATTGAAGCATTTTCATAAATCAATTTATTTTCGTTACAA
1 ACATTCCATATACTCATCAATAGGACATTGAAGCATTTTCATAAATCAATTTATTTTCGTTACAA
30439337 T
66 T
30439338 ACATTCCATATACTCATCAATAGGACATTGAAGCATTTTCATAAATCAATTTATTTTCGTTACAA
1 ACATTCCATATACTCATCAATAGGACATTGAAGCATTTTCATAAATCAATTTATTTTCGTTACAA
30439403 T
66 T
30439404 CAAACAACTA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.36, C:0.18, G:0.08, T:0.38
Consensus pattern (66 bp):
ACATTCCATATACTCATCAATAGGACATTGAAGCATTTTCATAAATCAATTTATTTTCGTTACAA
T
Found at i:30439656 original size:27 final size:27
Alignment explanation
Indices: 30439626--30439803 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
30439616 ATATTGAGTC
* *
30439626 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
30439653 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
30439680 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
30439708 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
** **
30439735 CGCACACTTAGTGC-ATCATGTTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
30439762 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
30439789 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
30439804 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:30460811 original size:45 final size:45
Alignment explanation
Indices: 30460760--30460849 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
30460750 AATATCTGAA
30460760 TACGAACATGAATTCGTAAGACTCAGTAGGTATGCCCGGGAGTGT
1 TACGAACATGAATTCGTAAGACTCAGTAGGTATGCCCGGGAGTGT
30460805 TACGAACATGAATTCGTAAGACTCAGTAGGTATGCCCGGGAGTGT
1 TACGAACATGAATTCGTAAGACTCAGTAGGTATGCCCGGGAGTGT
30460850 GTAGCTGATG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (45 bp):
TACGAACATGAATTCGTAAGACTCAGTAGGTATGCCCGGGAGTGT
Found at i:30466721 original size:7 final size:7
Alignment explanation
Indices: 30466651--30466721 Score: 83
Period size: 7 Copynumber: 10.0 Consensus size: 7
30466641 AGGTGAAGAG
30466651 GAAAGAGA
1 GAAAG-GA
30466659 GAAAGG-
1 GAAAGGA
* *
30466665 GAGAGGG
1 GAAAGGA
30466672 GAAAGG-
1 GAAAGGA
30466678 GTAATAGGA
1 G-AA-AGGA
30466687 GAAAGGA
1 GAAAGGA
30466694 GAAAGGA
1 GAAAGGA
30466701 GAAAGGA
1 GAAAGGA
30466708 GAAAGGA
1 GAAAGGA
30466715 GAAAGGA
1 GAAAGGA
30466722 AAGGGAACGG
Statistics
Matches: 57, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
6 6 0.11
7 40 0.70
8 10 0.18
9 1 0.02
ACGTcount: A:0.52, C:0.00, G:0.45, T:0.03
Consensus pattern (7 bp):
GAAAGGA
Found at i:30467575 original size:146 final size:146
Alignment explanation
Indices: 30467403--30470733 Score: 6520
Period size: 146 Copynumber: 22.8 Consensus size: 146
30467393 TATATAAGAA
*
30467403 CTTAATTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30467468 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30467533 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30467549 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30467614 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30467679 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30467695 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30467760 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30467825 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30467841 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30467906 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30467971 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30467987 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30468052 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30468117 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30468133 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30468198 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30468263 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30468279 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30468344 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30468409 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30468425 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30468490 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30468555 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30468571 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30468636 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30468701 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30468717 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30468782 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30468847 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30468863 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30468928 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30468993 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30469009 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30469074 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30469139 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30469155 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30469220 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30469285 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30469301 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30469366 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30469431 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30469447 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30469512 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30469577 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30469593 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30469658 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30469723 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30469739 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30469804 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30469869 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30469885 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30469950 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30470015 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30470031 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30470096 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30470161 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30470177 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30470242 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30470307 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30470323 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
30470388 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30470453 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
30470469 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
*
30470534 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAAACCCCTAA
66 ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
30470599 CTACTACCCTCTAAAC
131 CTACTACCCTCTAAAC
* * * * *
30470615 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCCTAAACCCTATCCTAACACCGA
1 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
** * * * * *
30470680 ATC-CATAAACCCTAAATCCCTAACTCTTAATCTCTAACCCCTAACCCTTAACCC
66 ATCTC-TAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCC
30470734 CTAAATCACA
Statistics
Matches: 3170, Mismatches: 14, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
145 1 0.00
146 3169 1.00
ACGTcount: A:0.39, C:0.29, G:0.01, T:0.30
Consensus pattern (146 bp):
CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACCTTAAACCCTAACTTGACCCCGA
ATCTCTAAACCCTAAATCATTAATTCTTAACCTTTAATCCCTAACCCTAAACCCTAACCCCCTAA
CTACTACCCTCTAAAC
Found at i:30470737 original size:21 final size:21
Alignment explanation
Indices: 30470697--30470737 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
30470687 AACCCTAAAT
* * *
30470697 CCCTAACTCTTAATCTCTAAC
1 CCCTAACCCTTAACCCCTAAC
30470718 CCCTAACCCTTAACCCCTAA
1 CCCTAACCCTTAACCCCTAA
30470738 ATCACAACCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.44, G:0.00, T:0.27
Consensus pattern (21 bp):
CCCTAACCCTTAACCCCTAAC
Found at i:30470857 original size:14 final size:14
Alignment explanation
Indices: 30470838--30470874 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
30470828 ATTCTAAATT
30470838 AACCATATACCCTA
1 AACCATATACCCTA
30470852 AACCATATACCCTA
1 AACCATATACCCTA
*
30470866 AAACATATA
1 AACCATATA
30470875 TATTAAAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.22
Consensus pattern (14 bp):
AACCATATACCCTA
Found at i:30471390 original size:40 final size:41
Alignment explanation
Indices: 30471198--30471388 Score: 276
Period size: 41 Copynumber: 4.7 Consensus size: 41
30471188 AAATGTTTTT
* * *
30471198 GCGGCACTTTATCAAAAATGCCGCTAAAAGCCTGAGCATTA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAAGCCTAAGCATTA
30471239 GCGGCGC-TTTTCAAAAATGCCGCTAAAAGCCTAAGCATTA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAAGCCTAAGCATTA
*** * *
30471279 GCAATGCTTTTTCAAAAATGCCGCTAAAAGCATGAGCATTA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAAGCCTAAGCATTA
30471320 GCGGCGCTTTTTCAAAAATGCCGCTAAAAGCCTAAGCATTA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAAGCCTAAGCATTA
** *
30471361 GCGGCGCTTTTGAAAAAACGCCGCTAAA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAA
30471389 GCACCAAATG
Statistics
Matches: 133, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 35 0.26
41 98 0.74
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.23
Consensus pattern (41 bp):
GCGGCGCTTTTTCAAAAATGCCGCTAAAAGCCTAAGCATTA
Found at i:30471499 original size:39 final size:40
Alignment explanation
Indices: 30471456--30471566 Score: 136
Period size: 40 Copynumber: 2.8 Consensus size: 40
30471446 GAAAAACGCT
* * *
30471456 GCTAATGCT-AATTTTTAACGGCGCTTTTTTG-GAAGCACC
1 GCTAATGCTCGATTTTTAGCGGCG-TTTTTTGTAAAGCACC
* * *
30471495 GCTAATGCTCGCTATTTAGCGGCGTTTTATGTAAAGCACC
1 GCTAATGCTCGATTTTTAGCGGCGTTTTTTGTAAAGCACC
*
30471535 TCTAATGCTCGATTTTTAGCGGCGTTTTTTGT
1 GCTAATGCTCGATTTTTAGCGGCGTTTTTTGT
30471567 CCAAACGCCA
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
39 15 0.25
40 45 0.75
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.39
Consensus pattern (40 bp):
GCTAATGCTCGATTTTTAGCGGCGTTTTTTGTAAAGCACC
Found at i:30486024 original size:13 final size:13
Alignment explanation
Indices: 30486006--30486030 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30485996 GCTCATGACT
30486006 TCCCCCCCCCCCA
1 TCCCCCCCCCCCA
30486019 TCCCCCCCCCCC
1 TCCCCCCCCCCC
30486031 CAAATTTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.88, G:0.00, T:0.08
Consensus pattern (13 bp):
TCCCCCCCCCCCA
Found at i:30487281 original size:15 final size:15
Alignment explanation
Indices: 30487257--30487290 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
30487247 GCCCGGGCCC
*
30487257 AAAATTAAATAAAAT
1 AAAATCAAATAAAAT
*
30487272 AAAATCAAATCAAAT
1 AAAATCAAATAAAAT
30487287 AAAA
1 AAAA
30487291 ATAATAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.21
Consensus pattern (15 bp):
AAAATCAAATAAAAT
Found at i:30488701 original size:29 final size:29
Alignment explanation
Indices: 30488644--30488708 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 29
30488634 TTGTCATTAT
* *
30488644 TATTTTATTTTTTTATCTTTTTTTCTTGG
1 TATTTTATTTTTTTATCATTATTTCTTGG
30488673 TATTTTATTATTTCTT-TCATTATTT-TTGG
1 TATTTTATT-TTT-TTATCATTATTTCTTGG
30488702 TAATTTT
1 T-ATTTT
30488709 CATCTCATAC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 14 0.45
30 15 0.48
31 2 0.06
ACGTcount: A:0.15, C:0.06, G:0.06, T:0.72
Consensus pattern (29 bp):
TATTTTATTTTTTTATCATTATTTCTTGG
Found at i:30489018 original size:26 final size:26
Alignment explanation
Indices: 30488989--30489038 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
30488979 ATTAAAGTTC
*
30488989 ATTTATTTA-TATTTTTATGTATTTTT
1 ATTT-TTTACTATTATTATGTATTTTT
*
30489015 ATTTTTTACTATTATTATTTATTT
1 ATTTTTTACTATTATTATGTATTT
30489039 ATATAATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (26 bp):
ATTTTTTACTATTATTATGTATTTTT
Found at i:30489027 original size:16 final size:17
Alignment explanation
Indices: 30488994--30489040 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
30488984 AGTTCATTTA
*
30488994 TTTATATTTTTATGTATT
1 TTTAT-TTTTTATCTATT
30489012 TTTATTTTTTA-CTATT
1 TTTATTTTTTATCTATT
*
30489028 ATTATTTATTTAT
1 TTTATTT-TTTAT
30489041 ATAATTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 10 0.40
17 10 0.40
18 5 0.20
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (17 bp):
TTTATTTTTTATCTATT
Found at i:30489048 original size:26 final size:25
Alignment explanation
Indices: 30488993--30489049 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
30488983 AAGTTCATTT
* * *
30488993 ATTTATATTTTTATGTATTTTTATT
1 ATTTATATTATTATGTATTTATATA
* *
30489018 TTTTACTATTATTATTTATTTATATA
1 ATTTA-TATTATTATGTATTTATATA
30489044 ATTTAT
1 ATTTAT
30489050 TACAAATTAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (25 bp):
ATTTATATTATTATGTATTTATATA
Found at i:30494612 original size:18 final size:18
Alignment explanation
Indices: 30494589--30494630 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
30494579 GTACTAATTC
30494589 TACTAATTTAGTATGAGG
1 TACTAATTTAGTATGAGG
30494607 TACTAATTTAGTATGAGG
1 TACTAATTTAGTATGAGG
30494625 TACTAA
1 TACTAA
30494631 ACATGTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.36, C:0.07, G:0.19, T:0.38
Consensus pattern (18 bp):
TACTAATTTAGTATGAGG
Found at i:30496028 original size:27 final size:27
Alignment explanation
Indices: 30495922--30496028 Score: 69
Period size: 27 Copynumber: 4.0 Consensus size: 27
30495912 GGTTCACCAT
30495922 AGAGGCTATCCCTTCATGATTCGCCACA
1 AGAGGCTATCCCTTCATGATTCGCCA-A
* * * *
30495950 A-AGGC-ATTTCTTTCAT-ATTATGCCAC
1 AGAGGCTA-TCCCTTCATGATT-CGCCAA
* * * * *
30495976 ATAGGCTAT-CATTGCAAGGTTTGCCAA
1 AGAGGCTATCCCTT-CATGATTCGCCAA
30496003 AGAGGCTATCCCTTCATGATTCGCCA
1 AGAGGCTATCCCTTCATGATTCGCCA
30496029 CAAATGCATT
Statistics
Matches: 59, Mismatches: 13, Indels: 15
0.68 0.15 0.17
Matches are distributed among these distances:
26 8 0.14
27 44 0.75
28 7 0.12
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (27 bp):
AGAGGCTATCCCTTCATGATTCGCCAA
Found at i:30502712 original size:28 final size:27
Alignment explanation
Indices: 30502607--30502698 Score: 89
Period size: 27 Copynumber: 3.4 Consensus size: 27
30502597 CTCCACGAAG
* * * *
30502607 GCTTCCTTCTCATAGATAGTCAC-AAA
1 GCTTCCTTTTTATACATAGACACAAAA
*
30502633 GACTTCCTTTTTATAGATA-ACCACAAAA
1 G-CTTCCTTTTTATACATAGA-CACAAAA
*
30502661 GCTTCCTTTTTATACATAGACACAGAA
1 GCTTCCTTTTTATACATAGACACAAAA
*
30502688 GCTTCTTTTTT
1 GCTTCCTTTTT
30502699 CTAGCATATT
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
26 1 0.02
27 50 0.89
28 5 0.09
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (27 bp):
GCTTCCTTTTTATACATAGACACAAAA
Found at i:30509056 original size:426 final size:426
Alignment explanation
Indices: 30508263--30509124 Score: 1715
Period size: 426 Copynumber: 2.0 Consensus size: 426
30508253 ATACTTAGTT
30508263 TTATTTTTTAGACTTTATGAATAAATTTCTATATAAGAATTCAGTCCAAGAGGACCATTTAAAGG
1 TTATTTTTTAGACTTTATGAATAAATTTCTATATAAGAATTCAGTCCAAGAGGACCATTTAAAGG
30508328 CCTTGGACGAAATTCCCTTGAAATGCAACAATTAGGGTTTTTTTTAGTTTTCCTAGTAGGGATAG
66 CCTTGGACGAAATTCCCTTGAAATGCAACAATTAGGGTTTTTTTTAGTTTTCCTAGTAGGGATAG
30508393 GAAAGTAGTTAGGAGGCCTATGTATATATAGCTTGGTTGGCCACCCTTATACATGATATATTGAA
131 GAAAGTAGTTAGGAGGCCTATGTATATATAGCTTGGTTGGCCACCCTTATACATGATATATTGAA
30508458 TTCAGATTTTTTTTGTGGAGTGAAAACTCTCTTCGAGTTTCTCTAAGAATTCTCTCTTGAGTTTT
196 TTCAGATTTTTTTTGTGGAGTGAAAACTCTCTTCGAGTTTCTCTAAGAATTCTCTCTTGAGTTTT
30508523 CTTTAGAAGTAGTTTTAACAATCTTTTTTATTGTGGGAGCCATCTTCAACCTTCTTCTTGCCGTG
261 CTTTAGAAGTAGTTTTAACAATCTTTTTTATTGTGGGAGCCATCTTCAACCTTCTTCTTGCCGTG
30508588 TTTTTACATTGGAGGGAAGATTAGAGCCGTTTGGAGGGATTTGTGAAATCTTTCTTGATTTCAAG
326 TTTTTACATTGGAGGGAAGATTAGAGCCGTTTGGAGGGATTTGTGAAATCTTTCTTGATTTCAAG
30508653 GCTTCTTAGGACTTTATCCATCTTTTTTGCTGTTTG
391 GCTTCTTAGGACTTTATCCATCTTTTTTGCTGTTTG
30508689 TTATTTTTTAGACTTTATGAATAAATTTCTATATAAGAATTCAGTCCAAGAGGACCATTTAAAGG
1 TTATTTTTTAGACTTTATGAATAAATTTCTATATAAGAATTCAGTCCAAGAGGACCATTTAAAGG
30508754 CCTTGGACGAAATTCCCTTGAAATGCAACAATTAGGGTTTTTTTTAGTTTTCCTAGTAGGGATAG
66 CCTTGGACGAAATTCCCTTGAAATGCAACAATTAGGGTTTTTTTTAGTTTTCCTAGTAGGGATAG
30508819 GAAAGTAGTTAGGAGGCCTATGTATATATAGCTTGGTTGGCCACCCTTATACATGATATATTGAA
131 GAAAGTAGTTAGGAGGCCTATGTATATATAGCTTGGTTGGCCACCCTTATACATGATATATTGAA
30508884 TTCAGATTTTTTTTGTGGAGTGAAAACTCTCTTCGAGTTTCTCTAAGAATTCTCTCTTGAGTTTT
196 TTCAGATTTTTTTTGTGGAGTGAAAACTCTCTTCGAGTTTCTCTAAGAATTCTCTCTTGAGTTTT
30508949 CTTTAGAAGTAGTTTTAACAATCTTTTTTATTGTGGGAGCCATCTTCAACCTTCTTCTTGCCGTG
261 CTTTAGAAGTAGTTTTAACAATCTTTTTTATTGTGGGAGCCATCTTCAACCTTCTTCTTGCCGTG
30509014 TTTTTACATTGGAGGGAAGATTAGAGCCGTTTGGAGGGATTTGTGAAATCTTTCTTGATTTCAAG
326 TTTTTACATTGGAGGGAAGATTAGAGCCGTTTGGAGGGATTTGTGAAATCTTTCTTGATTTCAAG
30509079 GCTTCTTAGGACTTTATCCATCTTTTTTGCTGTTTG
391 GCTTCTTAGGACTTTATCCATCTTTTTTGCTGTTTG
*
30509115 TTCTTTTTTA
1 TTATTTTTTA
30509125 ATTATTTTTG
Statistics
Matches: 435, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
426 435 1.00
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.41
Consensus pattern (426 bp):
TTATTTTTTAGACTTTATGAATAAATTTCTATATAAGAATTCAGTCCAAGAGGACCATTTAAAGG
CCTTGGACGAAATTCCCTTGAAATGCAACAATTAGGGTTTTTTTTAGTTTTCCTAGTAGGGATAG
GAAAGTAGTTAGGAGGCCTATGTATATATAGCTTGGTTGGCCACCCTTATACATGATATATTGAA
TTCAGATTTTTTTTGTGGAGTGAAAACTCTCTTCGAGTTTCTCTAAGAATTCTCTCTTGAGTTTT
CTTTAGAAGTAGTTTTAACAATCTTTTTTATTGTGGGAGCCATCTTCAACCTTCTTCTTGCCGTG
TTTTTACATTGGAGGGAAGATTAGAGCCGTTTGGAGGGATTTGTGAAATCTTTCTTGATTTCAAG
GCTTCTTAGGACTTTATCCATCTTTTTTGCTGTTTG
Found at i:30516710 original size:26 final size:27
Alignment explanation
Indices: 30516651--30516712 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
30516641 ATTTTATAAA
30516651 GGTTAAAATCATCAAAAAATTTATCGG
1 GGTTAAAATCATCAAAAAATTTATCGG
* * *
30516678 GGGTAAAATCGTC-AAAATTTTA-CTGG
1 GGTTAAAATCATCAAAAAATTTATC-GG
30516704 GGTTAAAAT
1 GGTTAAAAT
30516713 AAGGATGAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 1 0.03
26 18 0.60
27 11 0.37
ACGTcount: A:0.40, C:0.10, G:0.19, T:0.31
Consensus pattern (27 bp):
GGTTAAAATCATCAAAAAATTTATCGG
Found at i:30518313 original size:40 final size:40
Alignment explanation
Indices: 30518258--30518338 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
30518248 ACGTTATGAA
*
30518258 TGTTCTGGGCAAACAATTGTTTCATTCATTTAGTTTTAAT
1 TGTTCTAGGCAAACAATTGTTTCATTCATTTAGTTTTAAT
30518298 TGTTCTAGGCAAACAATTGTTTCATTCATTTAGTTTTAAT
1 TGTTCTAGGCAAACAATTGTTTCATTCATTTAGTTTTAAT
30518338 T
1 T
30518339 ACTATTAATA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.48
Consensus pattern (40 bp):
TGTTCTAGGCAAACAATTGTTTCATTCATTTAGTTTTAAT
Found at i:30519021 original size:12 final size:13
Alignment explanation
Indices: 30518994--30519023 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
30518984 TGGTTTATTT
30518994 TTATTCTTTTTCA
1 TTATTCTTTTTCA
30519007 TTATTCTTTTT-A
1 TTATTCTTTTTCA
30519019 TTATT
1 TTATT
30519024 TTGTGATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.73
Consensus pattern (13 bp):
TTATTCTTTTTCA
Found at i:30523613 original size:27 final size:26
Alignment explanation
Indices: 30523413--30523631 Score: 246
Period size: 27 Copynumber: 8.2 Consensus size: 26
30523403 AGAGGTCAAT
*
30523413 AAATGACCGAAATACCCCTATAGGGTA
1 AAATGACTGAAATACCCC-ATAGGGTA
* *
30523440 AATTGACCGAAATA--CCATAGGGTA
1 AAATGACTGAAATACCCCATAGGGTA
30523464 AAATGACTGAAATACCCCTATAGGGTA
1 AAATGACTGAAATACCCC-ATAGGGTA
* *
30523491 AATTGACTGAAATACCCTCATAGGGTT
1 AAATGACTGAAATACCC-CATAGGGTA
*
30523518 AAATGATTGAAATACCCCCATAGGGTA
1 AAATGACTGAAATA-CCCCATAGGGTA
*
30523545 AAATGACCGAAATACCCCCATAGGGTA
1 AAATGACTGAAATA-CCCCATAGGGTA
* *
30523572 GAATGACCGAAATACCCTCATAGGGTA
1 AAATGACTGAAATACCC-CATAGGGTA
**
30523599 AAATGACTGTTATACCCC-TAGGAGATA
1 AAATGACTGAAATACCCCATAGG-G-TA
30523626 AAATGA
1 AAATGA
30523632 TTGTTATGGC
Statistics
Matches: 169, Mismatches: 15, Indels: 16
0.85 0.08 0.08
Matches are distributed among these distances:
24 20 0.12
25 6 0.04
26 7 0.04
27 132 0.78
28 4 0.02
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.21
Consensus pattern (26 bp):
AAATGACTGAAATACCCCATAGGGTA
Found at i:30523614 original size:81 final size:80
Alignment explanation
Indices: 30523412--30523616 Score: 274
Period size: 81 Copynumber: 2.6 Consensus size: 80
30523402 GAGAGGTCAA
* * *
30523412 TAAATGACCGAAATACCC-CTATAGGGTAAATTGACCGAAATA---CCATAGGGTAAAATGACTG
1 TAAATGACCGAAATACCCTC-ATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCG
*
30523473 AAATACCCCTATAGGG
65 AAATACCCCCATAGGG
* * *
30523489 TAAATTGACTGAAATACCCTCATAGGGTTAAATGATTGAAATACCCCCATAGGGTAAAATGACCG
1 TAAA-TGACCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCG
30523554 AAATACCCCCATAGGG
65 AAATACCCCCATAGGG
**
30523570 TAGAATGACCGAAATACCCTCATAGGGTAAAATGACTGTTATACCCC
1 TA-AATGACCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCC
30523617 TAGGAGATAA
Statistics
Matches: 110, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
77 4 0.04
78 31 0.28
79 1 0.01
81 72 0.65
82 2 0.02
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.22
Consensus pattern (80 bp):
TAAATGACCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCGA
AATACCCCCATAGGG
Found at i:30523869 original size:26 final size:26
Alignment explanation
Indices: 30523839--30523893 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
30523829 TTTGCCACAT
* * *
30523839 ATACTGTTACTGGCAGTTTTGCTGTG
1 ATACTATTACTGGCAGCTTTGCTGCG
30523865 ATACTATTACTGGCAGCTTTGCTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
30523891 ATA
1 ATA
30523894 TTGGTGTGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.38
Consensus pattern (26 bp):
ATACTATTACTGGCAGCTTTGCTGCG
Found at i:30524044 original size:28 final size:28
Alignment explanation
Indices: 30524003--30524078 Score: 109
Period size: 28 Copynumber: 2.7 Consensus size: 28
30523993 TGCATTGTTA
*
30524003 CTATATT-GAGCTAAGGCCCACACTGATT
1 CTATATTGGA-CTAAGGCCCACACTAATT
30524031 CTATATTGGACTAAGGCCCACACTAATT
1 CTATATTGGACTAAGGCCCACACTAATT
* *
30524059 CTGTATTGGGCTAAGGCCCA
1 CTATATTGGACTAAGGCCCA
30524079 TATTGTTACT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
28 42 0.95
29 2 0.05
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (28 bp):
CTATATTGGACTAAGGCCCACACTAATT
Found at i:30524090 original size:28 final size:27
Alignment explanation
Indices: 30523995--30524108 Score: 104
Period size: 28 Copynumber: 4.1 Consensus size: 27
30523985 TATTGCACTG
30523995 CATTGTTACTATATTGAGCTAAGGCCCA
1 CATTGTT-CTATATTGAGCTAAGGCCCA
*
30524023 CACTGATTCTATATTG-GACTAAGGCCCA
1 CATTG-TTCTATATTGAG-CTAAGGCCCA
** * *
30524051 CACTAATTCTGTATTGGGCTAAGGCCCA
1 CA-TTGTTCTATATTGAGCTAAGGCCCA
* * *
30524079 TATTGTTACTGTATTGAGCTAGGGCCCA
1 CATTGTT-CTATATTGAGCTAAGGCCCA
30524107 CA
1 CA
30524109 CTATACTATT
Statistics
Matches: 70, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
27 4 0.06
28 63 0.90
29 3 0.04
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (27 bp):
CATTGTTCTATATTGAGCTAAGGCCCA
Found at i:30524094 original size:56 final size:56
Alignment explanation
Indices: 30524006--30524111 Score: 135
Period size: 56 Copynumber: 1.9 Consensus size: 56
30523996 ATTGTTACTA
30524006 TATTGAGCTAAGGCCCACACTGATTCTATATTG-GACTAAGGCCCACACTAATTCTG
1 TATTGAGCTAAGGCCCACACTGATTCTATATTGAG-CTAAGGCCCACACTAATTCTG
* * * * *
30524062 TATTGGGCTAAGGCCCATATTG-TTACTGTATTGAGCTAGGGCCCACACTA
1 TATTGAGCTAAGGCCCACACTGATT-CTATATTGAGCTAAGGCCCACACTA
30524112 TACTATTACT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
55 2 0.05
56 40 0.93
57 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (56 bp):
TATTGAGCTAAGGCCCACACTGATTCTATATTGAGCTAAGGCCCACACTAATTCTG
Found at i:30529305 original size:3 final size:3
Alignment explanation
Indices: 30529299--30529334 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
30529289 TTTTTTTTTA
30529299 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
30529335 TTGGAGCATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:30547243 original size:28 final size:28
Alignment explanation
Indices: 30547205--30547442 Score: 415
Period size: 28 Copynumber: 8.5 Consensus size: 28
30547195 TAAATTGTAC
*
30547205 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
30547233 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
30547261 AGCACTAAGTGTGCGAATTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
30547289 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
30547317 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
30547345 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
30547373 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
30547401 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
30547428 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
30547443 GACTTTATAT
Statistics
Matches: 205, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
27 24 0.12
28 181 0.88
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:30552478 original size:2 final size:2
Alignment explanation
Indices: 30552471--30552505 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
30552461 GAATTGAGAG
30552471 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
30552506 GCTTGTTTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:30553424 original size:70 final size:70
Alignment explanation
Indices: 30553340--30553480 Score: 264
Period size: 70 Copynumber: 2.0 Consensus size: 70
30553330 ATGTGTTAAA
30553340 TTAAAGGTTTAATTGTTGTTATTAATGAATTAATTGTATATTGGATGGTTGGATTTGCAAAAATA
1 TTAAAGGTTTAATTGTTGTTATTAATGAATTAATTGTATATTGGATGGTTGGATTTGCAAAAATA
30553405 GGTTT
66 GGTTT
* *
30553410 TTAAAGTTTTAATTGTTGTTATTAATGACTTAATTGTATATTGGATGGTTGGATTTGCAAAAATA
1 TTAAAGGTTTAATTGTTGTTATTAATGAATTAATTGTATATTGGATGGTTGGATTTGCAAAAATA
30553475 GGTTT
66 GGTTT
30553480 T
1 T
30553481 ATTTTATAAA
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.30, C:0.02, G:0.21, T:0.47
Consensus pattern (70 bp):
TTAAAGGTTTAATTGTTGTTATTAATGAATTAATTGTATATTGGATGGTTGGATTTGCAAAAATA
GGTTT
Found at i:30557038 original size:43 final size:42
Alignment explanation
Indices: 30556990--30557219 Score: 282
Period size: 43 Copynumber: 5.3 Consensus size: 42
30556980 GAGGAATATA
*
30556990 TGGAAAAGCGCCGCTAGAGGTCATGGTCTTTTAGCGGCGTTGT
1 TGGAAAAGCGCCGCTAAAGGTCATGGTC-TTTAGCGGCGTTGT
* * *
30557033 TGGAAAAGCGCCGCTAGAGGTCATGATCTTTTAGCGGCATTTGT
1 TGGAAAAGCGCCGCTAAAGGTCATGGTC-TTTAGCGGC-GTTGT
* *
30557077 GGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGT
1 TGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCG-TTGT
* *
30557120 GGGAAAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTGT
1 TGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCG-TTGT
* * *
30557163 AGGAAAAGCGCCGCTAAAGGTCCTGGTCTTTAACGGCGTT-T
1 TGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTGT
*
30557204 GTGGTGAAAGCGCCGC
1 -TGG-AAAAGCGCCGC
30557220 AAATACTTAG
Statistics
Matches: 171, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
41 1 0.01
42 4 0.02
43 138 0.81
44 28 0.16
ACGTcount: A:0.20, C:0.20, G:0.33, T:0.26
Consensus pattern (42 bp):
TGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTGT
Found at i:30557169 original size:86 final size:87
Alignment explanation
Indices: 30556991--30557219 Score: 329
Period size: 86 Copynumber: 2.6 Consensus size: 87
30556981 AGGAATATAT
* * *
30556991 GGAAAAGCGCCGCTAGAGGTCATGGTCTTTTAGCGGCG-TTGTTGGAAAAGCGCCGCTAGAGGTC
1 GGAAAAGCGCCGCTAAAGGTCATGGTC-TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC
*
30557055 ATGATCTTTTAGCGGCATTTGTG
65 ATGATCTTTTAGCGGCATTTGTA
* *
30557078 GGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCC
1 GGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCA
* *
30557143 TGGTC-TTTAGCGGCGTTTGTA
66 TGATCTTTTAGCGGCATTTGTA
* *
30557164 GGAAAAGCGCCGCTAAAGGTCCTGGTCTTTAACGGCGTTTGTGGTG-AAAGCGCCGC
1 GGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGG-GAAAAGCGCCGC
30557220 AAATACTTAG
Statistics
Matches: 130, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
86 76 0.58
87 54 0.42
ACGTcount: A:0.21, C:0.20, G:0.34, T:0.26
Consensus pattern (87 bp):
GGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCA
TGATCTTTTAGCGGCATTTGTA
Found at i:30557976 original size:168 final size:168
Alignment explanation
Indices: 30557698--30558034 Score: 629
Period size: 168 Copynumber: 2.0 Consensus size: 168
30557688 AAGTTTAGAG
30557698 GTAAAATCGTAATTTTTCCAAAGTTAGAGTCAAGGGCTGTTTTGATAAATGTGAGTATTAAATAA
1 GTAAAATCGTAATTTTTCCAAAGTTAGAGTCAAGGGCTGTTTTGATAAATGTGAGTATTAAATAA
*
30557763 ACTAAATTTGATATTATAGATCAAGAAGAACGAAATTCGGGGTTAGATAGAGGAAAGAAAAAGGT
66 ACTAAATTTGATATTATAGATCAAGAAGAACGAAATTCGGGGTTAGACAGAGGAAAGAAAAAGGT
*
30557828 TGAAGACTAAGTTGATAGATTTGGCCATATTTTGTACC
131 TGAAGACTAAGTTGATAGATTTGACCATATTTTGTACC
30557866 GTAAAATCGTAATTTTTCCAAAGTTAGAGTCAAGGGCTGTTTTGATAAATGTGAGTATTAAATAA
1 GTAAAATCGTAATTTTTCCAAAGTTAGAGTCAAGGGCTGTTTTGATAAATGTGAGTATTAAATAA
* *
30557931 ACTAAATTTGATATTATAGATCAAGAAGAACGAAATTTGGGGTTAGACCGAGGAAAGAAAAAGGT
66 ACTAAATTTGATATTATAGATCAAGAAGAACGAAATTCGGGGTTAGACAGAGGAAAGAAAAAGGT
*
30557996 TGAAGAGTAAGTTGATAGATTTGACCATATTTTGTACC
131 TGAAGACTAAGTTGATAGATTTGACCATATTTTGTACC
30558034 G
1 G
30558035 AGGTAAGTTT
Statistics
Matches: 164, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
168 164 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (168 bp):
GTAAAATCGTAATTTTTCCAAAGTTAGAGTCAAGGGCTGTTTTGATAAATGTGAGTATTAAATAA
ACTAAATTTGATATTATAGATCAAGAAGAACGAAATTCGGGGTTAGACAGAGGAAAGAAAAAGGT
TGAAGACTAAGTTGATAGATTTGACCATATTTTGTACC
Found at i:30558334 original size:50 final size:50
Alignment explanation
Indices: 30558227--30558473 Score: 221
Period size: 50 Copynumber: 4.8 Consensus size: 50
30558217 ATTTGGGTAA
* *
30558227 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA-G--ATG
* *
30558283 AGAGGTCCCATGTAATACCATGTCTGGGAAATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*** * * *
30558333 AGAGGTCCCCCATAAGACCATGTCTGGGACATGGCATGGGCACCAATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * * *
30558383 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA--GTACAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* ** *
30558432 AAACATCCCATGTAAGACCATGTTTGGGACATGG-ATTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCA-TTGGCA
30558474 TGTTATTATC
Statistics
Matches: 160, Mismatches: 29, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
48 1 0.01
49 37 0.23
50 79 0.49
52 1 0.01
53 2 0.01
55 1 0.01
56 39 0.24
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:30558409 original size:100 final size:102
Alignment explanation
Indices: 30558239--30558424 Score: 259
Period size: 100 Copynumber: 1.8 Consensus size: 102
30558229 AGATCCCATG
* * ** *
30558239 TAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATGAGAGGTCCCATGTAATACCAT
1 TAAGACCATGTCTGGGACATGGCATGGGCACCA-T-A-G-TATGAGAACTCCCATGTAAGACCAT
*
30558304 GTCTGGGAAATGGCATTGGCACCGAGATGAGAGGTCCCCCA
62 ATCTGGGAAATGGCATTGGCACCGAGATGAGAGGTCCCCCA
30558345 TAAGACCATGTCTGGGACATGGCATGGGCACCA-A-TATGAGAACTCCCATGTAAGACCATATCT
1 TAAGACCATGTCTGGGACATGGCATGGGCACCATAGTATGAGAACTCCCATGTAAGACCATATCT
*
30558408 GGGATATGGCATTGGCA
66 GGGAAATGGCATTGGCA
30558425 GTACAAGAAA
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
100 41 0.56
103 1 0.01
106 31 0.42
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (102 bp):
TAAGACCATGTCTGGGACATGGCATGGGCACCATAGTATGAGAACTCCCATGTAAGACCATATCT
GGGAAATGGCATTGGCACCGAGATGAGAGGTCCCCCA
Found at i:30559893 original size:27 final size:28
Alignment explanation
Indices: 30559839--30559894 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
30559829 GGAAAAGCCT
* *
30559839 ACTAAGGAGATAGAAGCCCAAATTGTCC
1 ACTAAGGAGAGAGAAGCCCAAATCGTCC
30559867 ACTAAGGAG-GAGAAGACCC-AATCGTCC
1 ACTAAGGAGAGAGAAG-CCCAAATCGTCC
30559894 A
1 A
30559895 TAGAGGTGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 13 0.52
28 12 0.48
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.14
Consensus pattern (28 bp):
ACTAAGGAGAGAGAAGCCCAAATCGTCC
Found at i:30560551 original size:90 final size:91
Alignment explanation
Indices: 30560398--30560576 Score: 342
Period size: 90 Copynumber: 2.0 Consensus size: 91
30560388 TTTGTTCTAA
30560398 ATTTATGAACATGATTGCTAAATATATTTCTACTTTAGATTTGATTATAATGGCTTAACTCTGTT
1 ATTTATGAACATGATTGCTAAATATATTTCTACTTTAGATTTGATTATAATGGCTTAACTCTGTT
30560463 TATGTTAGATTGATTGCA-TCTTTAG
66 TATGTTAGATTGATTGCATTCTTTAG
*
30560488 ATTTATGAACATGATTGCTAAATATATTTCTACTTTAGATTTGATTATAATGTCTTAACTCTGTT
1 ATTTATGAACATGATTGCTAAATATATTTCTACTTTAGATTTGATTATAATGGCTTAACTCTGTT
30560553 TATGTTAGATTGATTGCATTCTTT
66 TATGTTAGATTGATTGCATTCTTT
30560577 TAGCTTAGAT
Statistics
Matches: 87, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
90 82 0.94
91 5 0.06
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.48
Consensus pattern (91 bp):
ATTTATGAACATGATTGCTAAATATATTTCTACTTTAGATTTGATTATAATGGCTTAACTCTGTT
TATGTTAGATTGATTGCATTCTTTAG
Found at i:30562699 original size:15 final size:17
Alignment explanation
Indices: 30562676--30562707 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
30562666 ACTCAAAATC
30562676 ATCCAAAACA-AAAAAA
1 ATCCAAAACATAAAAAA
30562692 ATCC-AAACATAAAAAA
1 ATCCAAAACATAAAAAA
30562708 GCAGAGAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.72, C:0.19, G:0.00, T:0.09
Consensus pattern (17 bp):
ATCCAAAACATAAAAAA
Found at i:30584614 original size:19 final size:20
Alignment explanation
Indices: 30584572--30584614 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
30584562 TCATGCTTTC
*
30584572 TATTCACATTTTCATATTCA
1 TATTCACATTTTCAAATTCA
30584592 -ATTCACATTTTCAAATT-A
1 TATTCACATTTTCAAATTCA
30584610 TATTC
1 TATTC
30584615 CACAATCACG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 20 0.95
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.49
Consensus pattern (20 bp):
TATTCACATTTTCAAATTCA
Found at i:30584836 original size:41 final size:38
Alignment explanation
Indices: 30584743--30584838 Score: 104
Period size: 41 Copynumber: 2.5 Consensus size: 38
30584733 ACCAGATTGG
30584743 CACCCAGTGTCTCATCG-ACCTAGCCGAAGTAAAGTGA
1 CACCCAGTGTCTCATCGAACCTAGCCGAAGTAAAGTGA
* * * * *
30584780 TACCCAATATCTCATCGAATCTATCCGAAGTAAAATAGTGA
1 CACCCAGTGTCTCATCGAACCTAGCCGAAGT--AA-AGTGA
*
30584821 CACCCAGTGTTTCATCGA
1 CACCCAGTGTCTCATCGA
30584839 CTCGAGGTCG
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
37 14 0.30
38 11 0.24
40 2 0.04
41 19 0.41
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (38 bp):
CACCCAGTGTCTCATCGAACCTAGCCGAAGTAAAGTGA
Found at i:30585567 original size:18 final size:19
Alignment explanation
Indices: 30585520--30585569 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
30585510 CAATTAAATA
*
30585520 ATAATAA-AAATAATTATT
1 ATAATAACAAATATTTATT
*
30585538 ATAATAATAAATATTTATT
1 ATAATAACAAATATTTATT
*
30585557 -TAATGACAAATAT
1 ATAATAACAAATAT
30585570 AAATATTACA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 18 0.64
19 10 0.36
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
ATAATAACAAATATTTATT
Found at i:30585857 original size:29 final size:29
Alignment explanation
Indices: 30585802--30585857 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
30585792 GTCTTTTCTT
**
30585802 AATTTATTTCATAATATAATACTATAACC
1 AATTTATTTCATAATATAATAAAATAACC
*
30585831 AATTTAATTT-ATAATATGATAAAATAA
1 AATTT-ATTTCATAATATAATAAAATAA
30585858 TAAAAATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 19 0.83
30 4 0.17
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.41
Consensus pattern (29 bp):
AATTTATTTCATAATATAATAAAATAACC
Found at i:30591479 original size:32 final size:33
Alignment explanation
Indices: 30591438--30591504 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
30591428 AGCTCAGCTG
*
30591438 AAACTATTACAGG-AGTGTAGAAGAGTAACCTA
1 AAACTATTACAGGCAGAGTAGAAGAGTAACCTA
30591470 AAACTATTACAGGCAGAGTAGAAGAGTAACCTA
1 AAACTATTACAGGCAGAGTAGAAGAGTAACCTA
30591503 AA
1 AA
30591505 TAAACGTGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.46, C:0.13, G:0.21, T:0.19
Consensus pattern (33 bp):
AAACTATTACAGGCAGAGTAGAAGAGTAACCTA
Found at i:30592184 original size:7 final size:7
Alignment explanation
Indices: 30592174--30592218 Score: 63
Period size: 7 Copynumber: 6.1 Consensus size: 7
30592164 TTTTAAAATA
30592174 CATTTCC
1 CATTTCC
*
30592181 CATTAACC
1 CATT-TCC
30592189 CATTTTCC
1 CA-TTTCC
30592197 CATTTCC
1 CATTTCC
30592204 CATTTCC
1 CATTTCC
30592211 CATTTCC
1 CATTTCC
30592218 C
1 C
30592219 CTCTTCTACG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
7 24 0.71
8 8 0.24
9 2 0.06
ACGTcount: A:0.18, C:0.42, G:0.00, T:0.40
Consensus pattern (7 bp):
CATTTCC
Found at i:30602428 original size:42 final size:42
Alignment explanation
Indices: 30602336--30602432 Score: 110
Period size: 42 Copynumber: 2.3 Consensus size: 42
30602326 TTACGAATTA
* * *
30602336 GGAGCACACAGGCAAGTGACACGGGTGTGTGTCAGGCCGTGT
1 GGAGCACACGGGCAAGTGACACGGGTGTGTGTCAGACCGTAT
*
30602378 GG-GACACACGGGCAAGT-ACACGGGTGTGTG-CTAGATCGTAT
1 GGAG-CACACGGGCAAGTGACACGGGTGTGTGTC-AGACCGTAT
30602419 GGAGTCACACGGGC
1 GGAG-CACACGGGC
30602433 TAGTTCTACA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
40 1 0.02
41 22 0.47
42 24 0.51
ACGTcount: A:0.23, C:0.22, G:0.39, T:0.16
Consensus pattern (42 bp):
GGAGCACACGGGCAAGTGACACGGGTGTGTGTCAGACCGTAT
Found at i:30603308 original size:20 final size:20
Alignment explanation
Indices: 30603280--30603335 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
30603270 GTACATCTTC
* * * *
30603280 TACTATGTTCTGTTCTATTT
1 TACTCTGTTTTGTTCTAATA
30603300 TACTCTGTTTTGTTCTAATA
1 TACTCTGTTTTGTTCTAATA
*
30603320 TGCTCTGTTTTGTTCT
1 TACTCTGTTTTGTTCT
30603336 GTTCTGCTCT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.12, C:0.16, G:0.12, T:0.59
Consensus pattern (20 bp):
TACTCTGTTTTGTTCTAATA
Found at i:30603333 original size:25 final size:25
Alignment explanation
Indices: 30603305--30603354 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
30603295 TATTTTACTC
*
30603305 TGTTTTGTTCTAATATGCTCTGTTT
1 TGTTCTGTTCTAATATGCTCTGTTT
** *
30603330 TGTTCTGTTCTGCTCTGCTCTGTTT
1 TGTTCTGTTCTAATATGCTCTGTTT
30603355 AATTCTATTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.06, C:0.18, G:0.18, T:0.58
Consensus pattern (25 bp):
TGTTCTGTTCTAATATGCTCTGTTT
Found at i:30603360 original size:25 final size:25
Alignment explanation
Indices: 30603320--30603368 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
30603310 TGTTCTAATA
** *
30603320 TGCTCTGTTTTGTTCTGTTCTGCTC
1 TGCTCTGTTTAATTCTATTCTGCTC
30603345 TGCTCTGTTTAATTCTATTCTGCT
1 TGCTCTGTTTAATTCTATTCTGCT
30603369 TGATTTGTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.06, C:0.22, G:0.16, T:0.55
Consensus pattern (25 bp):
TGCTCTGTTTAATTCTATTCTGCTC
Found at i:30604333 original size:27 final size:27
Alignment explanation
Indices: 30604303--30604426 Score: 144
Period size: 27 Copynumber: 4.7 Consensus size: 27
30604293 TCATTTAGGT
* * *
30604303 TTGCTTACACAAGTTGTAATATGTAGA
1 TTGCTCACACAAGCTGTAATATTTAGA
* *
30604330 TTGCTCACACAAGCTATAATGTTTAGA
1 TTGCTCACACAAGCTGTAATATTTAGA
*
30604357 TTTCTCACACAAGCTGTAATATTTAGA
1 TTGCTCACACAAGCTGTAATATTTAGA
* * *
30604384 TTGCT--CACAAGTTGTGATATTTAGG
1 TTGCTCACACAAGCTGTAATATTTAGA
*
30604409 TTGCTCGCACAAGCTGTA
1 TTGCTCACACAAGCTGTA
30604427 GATCAGGGTT
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
25 22 0.27
27 59 0.73
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (27 bp):
TTGCTCACACAAGCTGTAATATTTAGA
Found at i:30606011 original size:18 final size:18
Alignment explanation
Indices: 30605988--30606024 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
30605978 TAATCATTAT
30605988 TATTAGTATTAT-TATTTA
1 TATTAGT-TTATATATTTA
30606006 TATTAGTTTATATATTTA
1 TATTAGTTTATATATTTA
30606024 T
1 T
30606025 CTACATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
TATTAGTTTATATATTTA
Found at i:30611044 original size:7 final size:7
Alignment explanation
Indices: 30611022--30611072 Score: 56
Period size: 6 Copynumber: 7.9 Consensus size: 7
30611012 TCCTTTCAAA
30611022 AAAAATC
1 AAAAATC
30611029 -AAAAT-
1 AAAAATC
30611034 AAAAATC
1 AAAAATC
30611041 -AAAATC
1 AAAAATC
30611047 AAAAATC
1 AAAAATC
*
30611054 -AAAATA
1 AAAAATC
*
30611060 AAAAATA
1 AAAAATC
30611067 AAAAAT
1 AAAAAT
30611073 GAGAGAAAAG
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
6 21 0.54
7 18 0.46
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (7 bp):
AAAAATC
Found at i:30611050 original size:13 final size:12
Alignment explanation
Indices: 30611022--30611063 Score: 75
Period size: 12 Copynumber: 3.4 Consensus size: 12
30611012 TCCTTTCAAA
30611022 AAAAATCAAAAT
1 AAAAATCAAAAT
30611034 AAAAATCAAAAT
1 AAAAATCAAAAT
30611046 CAAAAATCAAAAT
1 -AAAAATCAAAAT
30611059 AAAAA
1 AAAAA
30611064 ATAAAAAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
12 17 0.59
13 12 0.41
ACGTcount: A:0.76, C:0.10, G:0.00, T:0.14
Consensus pattern (12 bp):
AAAAATCAAAAT
Found at i:30611070 original size:13 final size:13
Alignment explanation
Indices: 30611021--30611069 Score: 75
Period size: 13 Copynumber: 3.9 Consensus size: 13
30611011 ATCCTTTCAA
30611021 AAAAAATCAAAAT
1 AAAAAATCAAAAT
30611034 -AAAAATCAAAAT
1 AAAAAATCAAAAT
*
30611046 CAAAAATCAAAAT
1 AAAAAATCAAAAT
30611059 AAAAAAT-AAAA
1 AAAAAATCAAAA
30611070 AATGAGAGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
12 16 0.47
13 18 0.53
ACGTcount: A:0.78, C:0.08, G:0.00, T:0.14
Consensus pattern (13 bp):
AAAAAATCAAAAT
Found at i:30612010 original size:13 final size:13
Alignment explanation
Indices: 30611992--30612041 Score: 64
Period size: 13 Copynumber: 3.6 Consensus size: 13
30611982 TTGAGTCAAA
30611992 AAAATGAAAAATG
1 AAAATGAAAAATG
30612005 AAAATGAAAAATG
1 AAAATGAAAAATG
*
30612018 AAAAAATGAAAAAGTA
1 --AAAATGAAAAA-TG
30612034 AAAATGAA
1 AAAATGAA
30612042 GAGGCTAAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
13 13 0.39
14 8 0.24
15 11 0.33
16 1 0.03
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (13 bp):
AAAATGAAAAATG
Found at i:30612024 original size:8 final size:7
Alignment explanation
Indices: 30611991--30612041 Score: 70
Period size: 7 Copynumber: 7.3 Consensus size: 7
30611981 TTTGAGTCAA
30611991 AAAAATG
1 AAAAATG
30611998 AAAAATG
1 AAAAATG
30612005 -AAAATG
1 AAAAATG
30612011 AAAAATG
1 AAAAATG
30612018 AAAAAATG
1 -AAAAATG
30612026 AAAAA-G
1 AAAAATG
30612032 TAAAAATG
1 -AAAAATG
30612040 AA
1 AA
30612042 GAGGCTAAGG
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
6 7 0.17
7 25 0.62
8 8 0.20
ACGTcount: A:0.73, C:0.00, G:0.14, T:0.14
Consensus pattern (7 bp):
AAAAATG
Found at i:30613778 original size:217 final size:217
Alignment explanation
Indices: 30613540--30614081 Score: 852
Period size: 217 Copynumber: 2.5 Consensus size: 217
30613530 AGTGTAAGGA
30613540 AGCAGATTGAAGCCGATAATCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
1 AGCAGATTGAAGCCGATAATCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
*
30613605 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTTCCTAAAGTTGCAATGGA
66 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTAAAGTTGCAATGGA
* * **
30613670 GCAGACTGATAAAACAAGTCTTATCCTACTGAAGTTGCAGTAGGGCAGA-TCGAAGAAGCAAATC
131 GCAGACTGAGAAAACAAGTCTTATCCCACTGAAGTCACAGTAGGGCAGACT-GAAGAAGCAAATC
30613734 TTATCTCCCTGAAGTTACAGTAG
195 TTATCTCCCTGAAGTTACAGTAG
30613757 AGCAGATTGAAGCCGATAATCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
1 AGCAGATTGAAGCCGATAATCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
* * * * *
30613822 TTATTTCTTTAAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAAGTTGCAGTGGA
66 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTAAAGTTGCAATGGA
* * *
30613887 GCAGACTGAGAAAACAAGTTTTATCCCCCTGAAGTCACAGTGGGGCAGACTGAAGAAGCAAATCT
131 GCAGACTGAGAAAACAAGTCTTATCCCACTGAAGTCACAGTAGGGCAGACTGAAGAAGCAAATCT
* * *
30613952 TATCTCCCTGAGGTTGCAGTGG
196 TATCTCCCTGAAGTTACAGTAG
* * * *
30613974 AGCAGATTGAAGTCGATAATCTTATCTCCCTGAAGTTGTAGTGGAGCGAATTAAAGTAATAGATC
1 AGCAGATTGAAGCCGATAATCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
** * *
30614039 TTATCTCTCTGAAGTTGCAGTAGAGCAGATCTCATCAAGTCTT
66 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTT
30614082 GCCGACTAGA
Statistics
Matches: 297, Mismatches: 27, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
217 296 1.00
218 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28
Consensus pattern (217 bp):
AGCAGATTGAAGCCGATAATCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTAAAGTTGCAATGGA
GCAGACTGAGAAAACAAGTCTTATCCCACTGAAGTCACAGTAGGGCAGACTGAAGAAGCAAATCT
TATCTCCCTGAAGTTACAGTAG
Found at i:30613917 original size:44 final size:44
Alignment explanation
Indices: 30613644--30614067 Score: 226
Period size: 44 Copynumber: 9.7 Consensus size: 44
30613634 TCGCATCAGG
* * * *
30613644 TCTTATCTTCCTAAAGTTGCAATGGAGCAGACTGATA-AAACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGA-AGAAACAAA
* *
30613688 TCTTATC-CTACTGAAGTTGCAGTAGG-GCAGA-TCGAAGAAGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGT-GGAGCAGACT-GAAGAAACAAA
* * * *
30613732 TCTTATCTCCCTGAAGTTACAGTAGAGCAGATTGAAG--CCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAC-A-AA
* * * * * * * * *
30613776 TCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAGTAATAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAACAAA
* ** * * ** * * * **
30613820 TCTTATTTCTTTAAAGTTGCAGTAGAGTGGA-T--CGCATCAGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAACAAA
*
30613861 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTG-AGAAAACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-AAACAAA
* * ** * *
30613905 TTTTATCCCCCTGAAGTCACAGTGGGGCAGACTGAAGAAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAACAAA
* * *
30613949 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAG--TCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAC-A-AA
* * * * * *
30613993 TCTTATCTCCCTGAAGTTGTAGTGGAGC-GAATTAAAGTAATAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAG-ACTGAAGAAACAAA
* *
30614037 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
30614068 TCTCATCAAG
Statistics
Matches: 292, Mismatches: 67, Indels: 42
0.73 0.17 0.10
Matches are distributed among these distances:
41 28 0.10
42 3 0.01
43 8 0.03
44 244 0.84
45 9 0.03
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAACAAA
Found at i:30615588 original size:18 final size:18
Alignment explanation
Indices: 30615565--30615601 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
30615555 TCATCATTAT
30615565 TATTAGTATTAT-TATTTA
1 TATTAGT-TTATATATTTA
30615583 TATTAGTTTATATATTTA
1 TATTAGTTTATATATTTA
30615601 T
1 T
30615602 CTACTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
TATTAGTTTATATATTTA
Found at i:30617543 original size:18 final size:18
Alignment explanation
Indices: 30617520--30617556 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
30617510 TCATCATTAT
30617520 TATTAGTATTAT-TATTTA
1 TATTAGT-TTATATATTTA
30617538 TATTAGTTTATATATTTA
1 TATTAGTTTATATATTTA
30617556 T
1 T
30617557 CTACTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
TATTAGTTTATATATTTA
Found at i:30622717 original size:5 final size:6
Alignment explanation
Indices: 30622702--30622727 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
30622692 GGATGTATTT
30622702 AAAAAG AAAAAG AAAAAG AAAAAG AA
1 AAAAAG AAAAAG AAAAAG AAAAAG AA
30622728 TTGTGATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:30623108 original size:19 final size:19
Alignment explanation
Indices: 30623086--30623136 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 19
30623076 AAAAATTGAA
* *
30623086 AAATATTTTTATACTTTTT
1 AAATAATTTTATAATTTTT
*
30623105 AAATAAATTTAATAATTTTT
1 AAAT-AATTTTATAATTTTT
30623125 -AATAATTTTATA
1 AAATAATTTTATA
30623137 GGTTTTTTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 8 0.30
19 7 0.26
20 12 0.44
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (19 bp):
AAATAATTTTATAATTTTT
Found at i:30633238 original size:28 final size:26
Alignment explanation
Indices: 30633207--30633259 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
30633197 TATTCATTAT
30633207 TTAAATTATTAAACATAATTAAAATATA
1 TTAAATTATTAAA-A-AATTAAAATATA
* *
30633235 TTAATTTATTTAAAAATTAAAATAT
1 TTAAATTATTAAAAAATTAAAATAT
30633260 TGTATTAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 11 0.48
27 1 0.04
28 11 0.48
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
TTAAATTATTAAAAAATTAAAATATA
Found at i:30633548 original size:15 final size:17
Alignment explanation
Indices: 30633528--30633560 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
30633518 TAGAATAAAC
30633528 TTAT-AAATTTAT-TAT
1 TTATAAAATTTATGTAT
30633543 TTATAAAATTTATGTAT
1 TTATAAAATTTATGTAT
30633560 T
1 T
30633561 AAATATAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 8 0.50
17 4 0.25
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (17 bp):
TTATAAAATTTATGTAT
Found at i:30643118 original size:16 final size:15
Alignment explanation
Indices: 30643097--30643126 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
30643087 TAATAATAAA
30643097 ATATAAAATATAAAAC
1 ATATAAAAT-TAAAAC
30643113 ATATAAAATTAAAA
1 ATATAAAATTAAAA
30643127 GTAATTAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (15 bp):
ATATAAAATTAAAAC
Found at i:30644104 original size:23 final size:25
Alignment explanation
Indices: 30644073--30644119 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
30644063 TGAACCCATT
* *
30644073 AAATGTATGC-TTAAGTGGTTTGAG
1 AAATGTATGCATGAAATGGTTTGAG
30644097 AAAT-TATGCATGAAATGGTTTGA
1 AAATGTATGCATGAAATGGTTTGA
30644120 TTTTAGATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.36
Consensus pattern (25 bp):
AAATGTATGCATGAAATGGTTTGAG
Found at i:30653791 original size:43 final size:42
Alignment explanation
Indices: 30653734--30653846 Score: 113
Period size: 43 Copynumber: 2.6 Consensus size: 42
30653724 AATGCCAACA
30653734 TCCCAGAC-GTGGTCTTACATGAAATCAAATACCGATGC-CACTG
1 TCCCAGACAG-GGTCTTACATGAAATCAAATA-CGATGCTCA-TG
* * * ** *
30653777 TCCCCGACAGGGTCTTACACGAACTCGTATACGATGCTGATG
1 TCCCAGACAGGGTCTTACATGAAATCAAATACGATGCTCATG
*
30653819 TCCCAGACATGGTCTTACATGTAAATCA
1 TCCCAGACAGGGTCTTACATG-AAATCA
30653847 CAAATCGATA
Statistics
Matches: 56, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
42 26 0.46
43 29 0.52
44 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACATGAAATCAAATACGATGCTCATG
Found at i:30662723 original size:35 final size:35
Alignment explanation
Indices: 30662637--30662795 Score: 185
Period size: 35 Copynumber: 4.5 Consensus size: 35
30662627 ACATCGTCAA
* * * * *
30662637 TCCAACCAAAACACAACAGATGCTCACATGAGCCAA
1 TCCAACCAAAACACACCA-ATGCTCATAAGAGCTAG
* *
30662673 TCCATCCAAATCACACCAATGCTCATAAGAGCTAG
1 TCCAACCAAAACACACCAATGCTCATAAGAGCTAG
* *
30662708 TCCAACCGAAACACACCAATGCTGATAAGAGCTAG
1 TCCAACCAAAACACACCAATGCTCATAAGAGCTAG
* *
30662743 TCCAACTAAAACA-ACCAATACTCATAAGAGCTAG
1 TCCAACCAAAACACACCAATGCTCATAAGAGCTAG
**
30662777 TCCAACTGAAACACACCAA
1 TCCAACCAAAACACACCAA
30662796 ACAGAGAGTA
Statistics
Matches: 106, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
34 31 0.29
35 60 0.57
36 15 0.14
ACGTcount: A:0.43, C:0.31, G:0.11, T:0.15
Consensus pattern (35 bp):
TCCAACCAAAACACACCAATGCTCATAAGAGCTAG
Found at i:30669802 original size:11 final size:11
Alignment explanation
Indices: 30669785--30669819 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
30669775 ATGAATTGTG
*
30669785 CTATGAATTTT
1 CTATGAAATTT
*
30669796 TTATGAAATTT
1 CTATGAAATTT
30669807 CTATGAAATTT
1 CTATGAAATTT
30669818 CT
1 CT
30669820 TTCTGAGATG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (11 bp):
CTATGAAATTT
Found at i:30672602 original size:11 final size:11
Alignment explanation
Indices: 30672564--30672606 Score: 61
Period size: 11 Copynumber: 3.9 Consensus size: 11
30672554 CTTAACTCCC
30672564 TTTTTTT-AAA
1 TTTTTTTAAAA
*
30672574 TAATTTTTAAAA
1 T-TTTTTTAAAA
30672586 TTTTTTTAAAA
1 TTTTTTTAAAA
30672597 TTTTTTTAAA
1 TTTTTTTAAA
30672607 CTATAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
10 1 0.03
11 24 0.83
12 4 0.14
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
TTTTTTTAAAA
Found at i:30674121 original size:137 final size:137
Alignment explanation
Indices: 30673875--30674148 Score: 467
Period size: 137 Copynumber: 2.0 Consensus size: 137
30673865 GATTCCCGTG
*
30673875 GATCCTGAGGTGTTTGACGATCAACACAAAGTCGACCTTTGGCAATTGAATACGGATTGGCTGAG
1 GATCCTGAGGTGTTTGACGATCAACACAAAGTCGACCTTTGGCAATTGAATACGGATTGGCCGAG
* * * * *
30673940 ATACTGGTCTGGGTACACGGAAACGTGGGAAGATCGGTATGAATATCTACCTATTCGGGAACCAA
66 ATACTGGTCCGAGTACACGGAAACGTGAGAAGATCGGTATGAATATATACCTACTCGGGAACCAA
30674005 TCATCGT
131 TCATCGT
*
30674012 GATCCTGAGGTGTTTGACGATCAACACAAAGTCGACCTTTGGCAATTGAATATGGATTGGCCGAG
1 GATCCTGAGGTGTTTGACGATCAACACAAAGTCGACCTTTGGCAATTGAATACGGATTGGCCGAG
* *
30674077 ATACTGGTCCGAGTACATGGAAATGTGAGAAGATCGGTATGAATATATACCTACTCGGGAACCAA
66 ATACTGGTCCGAGTACACGGAAACGTGAGAAGATCGGTATGAATATATACCTACTCGGGAACCAA
30674142 TCATCGT
131 TCATCGT
30674149 TCTGGAGTTA
Statistics
Matches: 128, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
137 128 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (137 bp):
GATCCTGAGGTGTTTGACGATCAACACAAAGTCGACCTTTGGCAATTGAATACGGATTGGCCGAG
ATACTGGTCCGAGTACACGGAAACGTGAGAAGATCGGTATGAATATATACCTACTCGGGAACCAA
TCATCGT
Found at i:30674478 original size:18 final size:18
Alignment explanation
Indices: 30674451--30674488 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
30674441 CAGGTGCGTT
*
30674451 TCCTAGCCCTTATATATA
1 TCCTAACCCTTATATATA
*
30674469 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATATA
30674487 TC
1 TC
30674489 TTTTTCTGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.29, G:0.05, T:0.39
Consensus pattern (18 bp):
TCCTAACCCTTATATATA
Found at i:30674950 original size:44 final size:44
Alignment explanation
Indices: 30674902--30674995 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
30674892 TGTACAAATA
**
30674902 TTTTGAATATTTTGATATTATTTTTTGTAATAAAATAGAAATTT
1 TTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAATTT
* * * *
30674946 TTTTGAGTTTTTTTATATTATTTGATGTAATAAAATAGAAGTTT
1 TTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAATTT
*
30674990 ATTTGA
1 TTTTGA
30674996 TGTAATAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (44 bp):
TTTTGAATATTTTGATATTATTTGATGTAATAAAATAGAAATTT
Found at i:30674997 original size:25 final size:25
Alignment explanation
Indices: 30674963--30675070 Score: 189
Period size: 25 Copynumber: 4.3 Consensus size: 25
30674953 TTTTTTTATA
30674963 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
30674988 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
30675013 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
* *
30675038 TTATTTGAAGTAATAAAATAGAAAT
1 TTATTTGATGTAATAAAATAGAAGT
*
30675063 TTTTTTGA
1 TTATTTGA
30675071 GTTATTTTGA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 80 1.00
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.42
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:30677359 original size:554 final size:554
Alignment explanation
Indices: 30676310--30677417 Score: 2216
Period size: 554 Copynumber: 2.0 Consensus size: 554
30676300 AGTATACCGG
30676310 CACCCCAATCTGAAATAACACAGATATCAGGTTGGGGACACACATGCCTCCTTAACCTAGAGAGA
1 CACCCCAATCTGAAATAACACAGATATCAGGTTGGGGACACACATGCCTCCTTAACCTAGAGAGA
30676375 AGGAAATCCCAGTCATCAGATGACTCCCCCGGTGTTATTACAAATGCAATTGGAAGAATTCTCCC
66 AGGAAATCCCAGTCATCAGATGACTCCCCCGGTGTTATTACAAATGCAATTGGAAGAATTCTCCC
30676440 ACCGCCATCCTGTGCCGCTGCAAGTAATAGCCGATGAGTATACATACAGAACATAAAGGTACCGT
131 ACCGCCATCCTGTGCCGCTGCAAGTAATAGCCGATGAGTATACATACAGAACATAAAGGTACCGT
30676505 CAATTTGTACCAACGGCTTGCAGTATGGAAATGCATCTCGACATTGCTTAAAGGTCCAAAACAGG
196 CAATTTGTACCAACGGCTTGCAGTATGGAAATGCATCTCGACATTGCTTAAAGGTCCAAAACAGG
30676570 CGTTTGAACACTTGGCATCCACGTAGCAATTGGCCGTTCTAGTACGCATGTTCCGTTTCAAGGTC
261 CGTTTGAACACTTGGCATCCACGTAGCAATTGGCCGTTCTAGTACGCATGTTCCGTTTCAAGGTC
30676635 TGTGATGGCACCTAGGACGTATCTCTCTAACACCTAACACCACTGCCATATTTCATTATATGAGG
326 TGTGATGGCACCTAGGACGTATCTCTCTAACACCTAACACCACTGCCATATTTCATTATATGAGG
30676700 CGTCCCACCCACTATGCATCTTCTCCAACGCCTTTTGCTTAGCTATCCAAGCCTTGCGGTAAGAG
391 CGTCCCACCCACTATGCATCTTCTCCAACGCCTTTTGCTTAGCTATCCAAGCCTTGCGGTAAGAG
30676765 GGCGTGTACACCATTTGGCTATGAATATTGGCAATTAAAACTGGCACTGAAGTCCTAGGATCTGC
456 GGCGTGTACACCATTTGGCTATGAATATTGGCAATTAAAACTGGCACTGAAGTCCTAGGATCTGC
30676830 TTTAACCGTGGGCAGTATCAAGCTAGCTAACATA
521 TTTAACCGTGGGCAGTATCAAGCTAGCTAACATA
30676864 CACCCCAATCTGAAATAACACAGATATCAGGTTGGGGACACACATGCCTCCTTAACCTAGAGAGA
1 CACCCCAATCTGAAATAACACAGATATCAGGTTGGGGACACACATGCCTCCTTAACCTAGAGAGA
30676929 AGGAAATCCCAGTCATCAGATGACTCCCCCGGTGTTATTACAAATGCAATTGGAAGAATTCTCCC
66 AGGAAATCCCAGTCATCAGATGACTCCCCCGGTGTTATTACAAATGCAATTGGAAGAATTCTCCC
30676994 ACCGCCATCCTGTGCCGCTGCAAGTAATAGCCGATGAGTATACATACAGAACATAAAGGTACCGT
131 ACCGCCATCCTGTGCCGCTGCAAGTAATAGCCGATGAGTATACATACAGAACATAAAGGTACCGT
30677059 CAATTTGTACCAACGGCTTGCAGTATGGAAATGCATCTCGACATTGCTTAAAGGTCCAAAACAGG
196 CAATTTGTACCAACGGCTTGCAGTATGGAAATGCATCTCGACATTGCTTAAAGGTCCAAAACAGG
30677124 CGTTTGAACACTTGGCATCCACGTAGCAATTGGCCGTTCTAGTACGCATGTTCCGTTTCAAGGTC
261 CGTTTGAACACTTGGCATCCACGTAGCAATTGGCCGTTCTAGTACGCATGTTCCGTTTCAAGGTC
30677189 TGTGATGGCACCTAGGACGTATCTCTCTAACACCTAACACCACTGCCATATTTCATTATATGAGG
326 TGTGATGGCACCTAGGACGTATCTCTCTAACACCTAACACCACTGCCATATTTCATTATATGAGG
30677254 CGTCCCACCCACTATGCATCTTCTCCAACGCCTTTTGCTTAGCTATCCAAGCCTTGCGGTAAGAG
391 CGTCCCACCCACTATGCATCTTCTCCAACGCCTTTTGCTTAGCTATCCAAGCCTTGCGGTAAGAG
30677319 GGCGTGTACACCATTTGGCTATGAATATTGGCAATTAAAACTGGCACTGAAGTCCTAGGATCTGC
456 GGCGTGTACACCATTTGGCTATGAATATTGGCAATTAAAACTGGCACTGAAGTCCTAGGATCTGC
30677384 TTTAACCGTGGGCAGTATCAAGCTAGCTAACATA
521 TTTAACCGTGGGCAGTATCAAGCTAGCTAACATA
30677418 GCTGAATCCA
Statistics
Matches: 554, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
554 554 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (554 bp):
CACCCCAATCTGAAATAACACAGATATCAGGTTGGGGACACACATGCCTCCTTAACCTAGAGAGA
AGGAAATCCCAGTCATCAGATGACTCCCCCGGTGTTATTACAAATGCAATTGGAAGAATTCTCCC
ACCGCCATCCTGTGCCGCTGCAAGTAATAGCCGATGAGTATACATACAGAACATAAAGGTACCGT
CAATTTGTACCAACGGCTTGCAGTATGGAAATGCATCTCGACATTGCTTAAAGGTCCAAAACAGG
CGTTTGAACACTTGGCATCCACGTAGCAATTGGCCGTTCTAGTACGCATGTTCCGTTTCAAGGTC
TGTGATGGCACCTAGGACGTATCTCTCTAACACCTAACACCACTGCCATATTTCATTATATGAGG
CGTCCCACCCACTATGCATCTTCTCCAACGCCTTTTGCTTAGCTATCCAAGCCTTGCGGTAAGAG
GGCGTGTACACCATTTGGCTATGAATATTGGCAATTAAAACTGGCACTGAAGTCCTAGGATCTGC
TTTAACCGTGGGCAGTATCAAGCTAGCTAACATA
Found at i:30680877 original size:25 final size:25
Alignment explanation
Indices: 30680843--30680896 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
30680833 CAGGCCCATT
*
30680843 TTCACAACTCGTGTGAGCATTTTGA
1 TTCACAACTCGTGTGAGCATTCTGA
30680868 TTCACAACTCGTGTGAGCATTCTGA
1 TTCACAACTCGTGTGAGCATTCTGA
30680893 TTCA
1 TTCA
30680897 TGGCTCATGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (25 bp):
TTCACAACTCGTGTGAGCATTCTGA
Found at i:30680907 original size:25 final size:25
Alignment explanation
Indices: 30680843--30680912 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
30680833 CAGGCCCATT
* *
30680843 TTCACAACTCGTGTGAGCATTTTGA
1 TTCACAACTCATGTGAGCATTCTGA
*
30680868 TTCACAACTCGTGTGAGCATTCTGA
1 TTCACAACTCATGTGAGCATTCTGA
***
30680893 TTCATGGCTCATGTGAGCAT
1 TTCACAACTCATGTGAGCAT
30680913 ACATGTATAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.34
Consensus pattern (25 bp):
TTCACAACTCATGTGAGCATTCTGA
Found at i:30683393 original size:21 final size:21
Alignment explanation
Indices: 30683325--30683394 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
30683315 AAGCCTAAAG
* *
30683325 GCTGCACAGAAGCACATAAGT
1 GCTGAACAGAAGCACATAAGA
* * * *
30683346 GCTAAACAGAAACCCATAAGG
1 GCTGAACAGAAGCACATAAGA
* *
30683367 GTTGAACAGAAGCTCATAAGA
1 GCTGAACAGAAGCACATAAGA
30683388 GCTGAAC
1 GCTGAAC
30683395 GGAAACCCAA
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.41, C:0.21, G:0.23, T:0.14
Consensus pattern (21 bp):
GCTGAACAGAAGCACATAAGA
Found at i:30698253 original size:16 final size:16
Alignment explanation
Indices: 30698232--30698262 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
30698222 TTCACTATTA
*
30698232 TGTCTTTTGTATTTTT
1 TGTCTTTTATATTTTT
30698248 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
30698263 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.06, G:0.10, T:0.74
Consensus pattern (16 bp):
TGTCTTTTATATTTTT
Found at i:30704978 original size:14 final size:14
Alignment explanation
Indices: 30704959--30704985 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
30704949 AAAGAACTCA
30704959 GATATTTCTATCAT
1 GATATTTCTATCAT
30704973 GATATTTCTATCA
1 GATATTTCTATCA
30704986 GATTTTATCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.48
Consensus pattern (14 bp):
GATATTTCTATCAT
Found at i:30705979 original size:31 final size:31
Alignment explanation
Indices: 30705911--30705981 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
30705901 ACTTTCAATT
* **
30705911 TAGTCACTAACGCTTTAGATCATTTCTATTT
1 TAGTCACTCACGCTTTAGATCATTTCTATAC
* * **
30705942 TGGTCACTCACGTTTTAGATTGTTTCTATAC
1 TAGTCACTCACGCTTTAGATCATTTCTATAC
30705973 TAGTCACTC
1 TAGTCACTC
30705982 TTTATTAAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.44
Consensus pattern (31 bp):
TAGTCACTCACGCTTTAGATCATTTCTATAC
Done.