Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold5966.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15457
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.26

Warning! 1141 characters in sequence are not A, C, G, or T


Found at i:5432 original size:15 final size:15

Alignment explanation


    Indices: 5412--5452  Score: 66
    Period size: 15  Copynumber: 2.8  Consensus size: 15

       5402 GGCTTGACAC

                           
       5412 CATGATCTCCATCAT
          1 CATGATCTCCATCAT

                           
       5427 CATGATCTCCATCAT
          1 CATGATCTCCATCAT

             *          
       5442 CGTG-TCTCCAT
          1 CATGATCTCCAT

       5453 GAAGTTGCTC


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  14    7  0.28
  15   18  0.72

ACGTcount: A:0.22, C:0.34, G:0.10, T:0.34


Consensus pattern (15 bp):   
CATGATCTCCATCAT
Done.