Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 1 of 167
Found at i:9152 original size:15 final size:15
Alignment explanation
Indices: 9132--9162 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
9122 CCATATCTTA
9132 GAGATTTTGATCCTC
1 GAGATTTTGATCCTC
9147 GAGATTTTGATCCTC
1 GAGATTTTGATCCTC
9162 G
1 G
9163 GTAGCGGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (15 bp):
GAGATTTTGATCCTC
Found at i:15958 original size:6 final size:6
Alignment explanation
Indices: 15942--16026 Score: 82
Period size: 7 Copynumber: 13.3 Consensus size: 6
15932 NGTTTTATTA
15942 TTTTTC TTTTTTC TTTTTC TTTTT- TTTTCTC TTTTTC TTTTTTC TTTCTTC
1 TTTTTC -TTTTTC TTTTTC TTTTTC TTTT-TC TTTTTC -TTTTTC TTT-TTC
* * *
15993 TTCTTTC TTCTTCC TTCTTC TTTTTC TTCTTC TT
1 TT-TTTC TT-TTTC TTTTTC TTTTTC TTTTTC TT
16027 CTTTACGCCT
Statistics
Matches: 68, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
5 4 0.06
6 31 0.46
7 32 0.47
8 1 0.01
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTC
Found at i:15976 original size:17 final size:16
Alignment explanation
Indices: 15948--16030 Score: 69
Period size: 17 Copynumber: 5.0 Consensus size: 16
15938 ATTATTTTTC
15948 TTTTTTCTTTTTCTTTT
1 TTTTTTCTTTTTC-TTT
15965 TTTTTCTCTTTTTCTTT
1 TTTTT-TCTTTTTCTTT
*
15982 TTTCTTTCTTCTTCTTT
1 TTT-TTTCTTTTTCTTT
* * *
15999 CTTCTTCCTTCTTC-TT
1 -TTTTTTCTTTTTCTTT
* *
16015 TTTCTTCTTCTTCTTT
1 TTTTTTCTTTTTCTTT
16031 ACGCCTTGGT
Statistics
Matches: 56, Mismatches: 6, Indels: 9
0.79 0.08 0.13
Matches are distributed among these distances:
15 10 0.18
16 4 0.07
17 30 0.54
18 12 0.21
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTTCTTTTTCTTT
Found at i:15995 original size:3 final size:3
Alignment explanation
Indices: 15987--16029 Score: 59
Period size: 3 Copynumber: 13.7 Consensus size: 3
15977 TCTTTTTTCT
*
15987 TTC TTC TTC TTTC TTC TTCC TTC TTC TTT TTC TTC TTC TTC TT
1 TTC TTC TTC -TTC TTC TT-C TTC TTC TTC TTC TTC TTC TTC TT
16030 TACGCCTTGG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
3 30 0.83
4 6 0.17
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:16420 original size:30 final size:30
Alignment explanation
Indices: 16371--16472 Score: 125
Period size: 30 Copynumber: 3.4 Consensus size: 30
16361 ATTTAGGATT
* *
16371 AAAATGAAATCTAATGAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * *
16401 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
*
16431 AAAATGAAATTT-AGGAAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAG-AAAGTTTAGGGGTC
*
16461 AAAATGCAATTT
1 AAAATGAAATTT
16473 TTATTTTTAA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 2 0.03
30 59 0.97
ACGTcount: A:0.44, C:0.05, G:0.23, T:0.28
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:19204 original size:54 final size:55
Alignment explanation
Indices: 19021--19237 Score: 304
Period size: 54 Copynumber: 4.0 Consensus size: 55
19011 CACGTGAGCC
* *
19021 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTG-AA
* *
19076 AAGGCTCAACTCACCTCTCGCAATATGGGTTGATTTTTTGAAAAATAG--A---AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAA
* * *
19127 AAGGTTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAATAGAAATT-AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
19181 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
19236 AA
1 AA
19238 AGTAGAAATT
Statistics
Matches: 145, Mismatches: 10, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
50 14 0.10
51 32 0.22
52 1 0.01
54 51 0.35
55 35 0.24
56 6 0.04
57 6 0.04
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (55 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
Found at i:19215 original size:105 final size:104
Alignment explanation
Indices: 19021--19230 Score: 323
Period size: 106 Copynumber: 2.0 Consensus size: 104
19011 CACGTGAGCC
* *
19021 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGCAAAAGGCTCAAC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATT-CAAAAGGCTCAAC
* *
19086 TCACCTCTCGCAATATGGGTTGATTTTTTGAAAAATAGAAA
65 TCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAA
* * *
19127 AAGGTTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAATAGAAATT-AAAAGGCTCAAC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACAGAAATTCAAAAGGCTCAAC
19191 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
65 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
19231 TTGAAAAAGT
Statistics
Matches: 96, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
104 16 0.17
105 34 0.35
106 36 0.38
107 10 0.10
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.30
Consensus pattern (104 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTCAAAAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
Found at i:19236 original size:14 final size:15
Alignment explanation
Indices: 19217--19252 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
19207 GAGTTGATTT
19217 TTGAAAAA-CAGAAA
1 TTGAAAAAGCAGAAA
*
19231 TTGAAAAAGTAGAAA
1 TTGAAAAAGCAGAAA
19246 TTGAAAA
1 TTGAAAA
19253 TACCTCAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.61, C:0.03, G:0.17, T:0.19
Consensus pattern (15 bp):
TTGAAAAAGCAGAAA
Found at i:19347 original size:13 final size:14
Alignment explanation
Indices: 19315--19347 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
19305 TTTTTGAAAC
19315 ACAGAAATTAAAAA
1 ACAGAAATTAAAAA
*
19329 ATAGAAATT-AAAA
1 ACAGAAATTAAAAA
19342 ACAGAA
1 ACAGAA
19348 TTTGAAAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.70, C:0.06, G:0.09, T:0.15
Consensus pattern (14 bp):
ACAGAAATTAAAAA
Found at i:19355 original size:14 final size:14
Alignment explanation
Indices: 19308--19355 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
19298 TTGATTTTTT
*
19308 TTGAAACACAGAAA
1 TTGAAAAACAGAAA
* *
19322 TTAAAAAATAGAAA
1 TTGAAAAACAGAAA
*
19336 TT-AAAAACAGAAT
1 TTGAAAAACAGAAA
19349 TTGAAAA
1 TTGAAAA
19356 GACCTCAGCG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
13 11 0.39
14 17 0.61
ACGTcount: A:0.62, C:0.06, G:0.10, T:0.21
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:19482 original size:85 final size:87
Alignment explanation
Indices: 19338--19585 Score: 299
Period size: 85 Copynumber: 2.8 Consensus size: 87
19328 AATAGAAATT
* * *
19338 AAAAACAGAATTTGAAAAGACCTCAGCGTGTGGCCTGAGACTCAACTCACCTCTTGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGC-TGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAG
*
19403 TTGATTTGAAAAG-TAGAATT-AG
65 TTGATTTGAAAAGATAG-ATTGAA
* * * *
19425 TAAAGCAGAAATTGAAAATACCTCAGC-GT-GCCTTGAGGCTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGAAATTGAAAATACCTCAGCTGTGGCC-TGAGGCTCAACTCACCTCTTGCAATATGAG
19488 TTGATTTTTGAAAAGCATAGATTGAA
65 TTGA--TTTGAAAAG-ATAGATTGAA
* *
19514 AAAAACATAAATTGAAAATACCTAAGCATGTGAGCC-GAGGCTCAACTCACCTCTTGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGC-TGTG-GCCTGAGGCTCAACTCACCTCTTGCAATATGA
19578 GTTGATTT
64 GTTGATTT
19586 TTAAAAAACA
Statistics
Matches: 137, Mismatches: 14, Indels: 18
0.81 0.08 0.11
Matches are distributed among these distances:
84 3 0.02
85 33 0.24
87 32 0.23
88 3 0.02
89 30 0.22
91 33 0.24
93 3 0.02
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (87 bp):
AAAAACAGAAATTGAAAATACCTCAGCTGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAGT
TGATTTGAAAAGATAGATTGAA
Found at i:19531 original size:15 final size:16
Alignment explanation
Indices: 19498--19531 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
19488 TTGATTTTTG
* *
19498 AAAAGCATAGATTGAA
1 AAAAACATAAATTGAA
19514 AAAAACATAAATTGAA
1 AAAAACATAAATTGAA
19530 AA
1 AA
19532 TACCTAAGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.18
Consensus pattern (16 bp):
AAAAACATAAATTGAA
Found at i:19565 original size:91 final size:88
Alignment explanation
Indices: 19338--19592 Score: 306
Period size: 91 Copynumber: 2.9 Consensus size: 88
19328 AATAGAAATT
* * *
19338 AAAAACAGAATTTGAAAAGACCTCAGCGTGTGGCCTGAGACTCAACTCACCTCTTGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGC-TGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAG
*
19403 TTGA--TTTGAAAAGTAGAATTAG
65 TTGATTTTTGAAAAGTAGAATTAA
* * * *
19425 TAAAGCAGAAATTGAAAATACCTCAGC-GT-GCCTTGAGGCTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGAAATTGAAAATACCTCAGCTGTGGCC-TGAGGCTCAACTCACCTCTTGCAATATGAG
19488 TTGATTTTTGAAAAGCATAG-ATTGAA
65 TTGATTTTTGAAAAG--TAGAATT-AA
* *
19514 AAAAACATAAATTGAAAATACCTAAGCATGTGAGCC-GAGGCTCAACTCACCTCTTGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGC-TGTG-GCCTGAGGCTCAACTCACCTCTTGCAATATGA
*
19578 GTTGATTTTTAAAAA
64 GTTGATTTTTGAAAA
19593 ACAAAAATTA
Statistics
Matches: 143, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
84 3 0.02
85 33 0.23
87 32 0.22
88 3 0.02
89 27 0.19
91 42 0.29
93 3 0.02
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (88 bp):
AAAAACAGAAATTGAAAATACCTCAGCTGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAGT
TGATTTTTGAAAAGTAGAATTAA
Found at i:19633 original size:54 final size:54
Alignment explanation
Indices: 19551--19756 Score: 162
Period size: 54 Copynumber: 3.5 Consensus size: 54
19541 ATGTGAGCCG
*
19551 AGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTAAAAAACAAAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAACAAAAATTAAA
* ** **
19605 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAA-TACATCGGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAA-A-AAAC-AAAAATTA-A--------
*
19669 CCCCG
54 ----A
** *
19674 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAACAAAAATTAAA
*
19728 AGGCTTAACTCACCTCTCGCAATATGAGT
1 AGGCTCAACTCACCTCTCGCAATATGAGT
19757 CAATTTAAAA
Statistics
Matches: 116, Mismatches: 19, Indels: 34
0.69 0.11 0.20
Matches are distributed among these distances:
54 59 0.51
55 1 0.01
56 6 0.05
57 6 0.05
66 6 0.05
67 6 0.05
68 1 0.01
69 31 0.27
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.28
Consensus pattern (54 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAACAAAAATTAAA
Found at i:19736 original size:123 final size:123
Alignment explanation
Indices: 19548--19850 Score: 518
Period size: 123 Copynumber: 2.5 Consensus size: 123
19538 AGCATGTGAG
* *
19548 CCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTAAAAAACAAAAATTAAAAGGCTTAA
1 CCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAAACAAAAATTAAAAGGCTTAA
19613 CTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACATCGGCGTGCC
66 CTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACATCGGCGTGCC
* *
19671 CCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAA
1 CCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAAACAAAAATTAAAAGGCTTAA
*
19736 CTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCC
66 CTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACATCGGCGTGCC
* ** *
19794 CCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAA-AAAATTTAAAA
1 CCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAAACAAAAATTAAAA
19851 ATACCTCAAC
Statistics
Matches: 170, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
122 10 0.06
123 160 0.94
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (123 bp):
CCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAAACAAAAATTAAAAGGCTTAA
CTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACATCGGCGTGCC
Found at i:19921 original size:72 final size:70
Alignment explanation
Indices: 19727--19922 Score: 207
Period size: 72 Copynumber: 2.8 Consensus size: 70
19717 CAAAAATTAA
* * * * * * **
19727 AAGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGT
1 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAACGT
19791 GCCCC
66 GCCCC
*
19796 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAA-AAAATTTAAAAATACCTCAA
1 AAGGCTCAACTCACTTCTCGCAATATGAGTTGA---TTTTAAAACAAAAATTAAAAATACCTCAA
* **
19860 CGTGTCTT
63 CGTGCCCC
* *
19868 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT--AAAACAAAAATTAAAA
19923 GGCTTAACTC
Statistics
Matches: 105, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
69 31 0.30
70 2 0.02
71 4 0.04
72 61 0.58
73 7 0.07
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (70 bp):
AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAACGT
GCCCC
Found at i:19947 original size:194 final size:194
Alignment explanation
Indices: 19673--20292 Score: 1125
Period size: 195 Copynumber: 3.2 Consensus size: 194
19663 GGCGTGCCCC
19673 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACT
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTGAAAAACAAAAATTAAAAGGCTTAACT
*
19738 CACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCAAGGCTC
65 CACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTC
19803 AACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAAAATTTAAAAATACCTCAACGTGTCTT
130 AACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAAAATTTAAAAATACCTCAACGTGTCTT
19868 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
* * *
19933 ACCTATCGCAATATGAGTCAATTTAAAATATAAACTAAAAATACCCCGGCGTGCCCCGAGGCTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
* ***
19998 ACTCACTTCTCGCAATGTGAGTTGATTTTTTTTAAAAATTTTTTAAAAATACCTCAACGTGTCTT
131 ACTCACTTCTCGCAATATGAGTTGA-TTTTTTTAAAAAAAATTTAAAAATACCTCAACGTGTCTT
20063 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
20128 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
**
20193 ACTCACTTCTCGCAATATGAGTTGATTTTTTT-TTAAAAATTTAAAAATACCTCAACGTGTCTT
131 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAAAATTTAAAAATACCTCAACGTGTCTT
20256 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
20293 TTTTTAAAAA
Statistics
Matches: 407, Mismatches: 17, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
193 63 0.15
194 124 0.30
195 220 0.54
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (194 bp):
GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAAAATTTAAAAATACCTCAACGTGTCTT
Found at i:20265 original size:71 final size:71
Alignment explanation
Indices: 20185--20363 Score: 349
Period size: 71 Copynumber: 2.5 Consensus size: 71
20175 GGCGTGCCCC
*
20185 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTAAAAATTTAAAAATACCTCAACG
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAAAAATTTAAAAATACCTCAACG
20250 TGTCTT
66 TGTCTT
20256 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAAAAATTTAAAAATACCTCAACG
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAAAAATTTAAAAATACCTCAACG
20321 TGTCTT
66 TGTCTT
20327 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
20364 CCTTGGAAAG
Statistics
Matches: 107, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 107 1.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.39
Consensus pattern (71 bp):
GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAAAAATTTAAAAATACCTCAACG
TGTCTT
Found at i:31497 original size:14 final size:15
Alignment explanation
Indices: 31467--31499 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
31457 AAACTAAACC
*
31467 AAAATTAAAACCATA
1 AAAATTAAAAACATA
31482 AAAATTAAAAAC-TA
1 AAAATTAAAAACATA
31496 AAAA
1 AAAA
31500 ACAACCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18
Consensus pattern (15 bp):
AAAATTAAAAACATA
Found at i:32265 original size:10 final size:10
Alignment explanation
Indices: 32230--32279 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
32220 NNNNNGGTAC
32230 TCTT-TCTTT
1 TCTTCTCTTT
* *
32239 TCTTCTCCTC
1 TCTTCTCTTT
32249 T-TTCTCTTT
1 TCTTCTCTTT
32258 TCTTCTCTTT
1 TCTTCTCTTT
*
32268 TCTTCTTTTT
1 TCTTCTCTTT
32278 TC
1 TC
32280 CTTCGAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
9 11 0.32
10 23 0.68
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (10 bp):
TCTTCTCTTT
Found at i:32277 original size:19 final size:19
Alignment explanation
Indices: 32234--32276 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
32224 NGGTACTCTT
32234 TCTTTTCTTCTCCTCTTTC
1 TCTTTTCTTCTCCTCTTTC
32253 TCTTTTCTTCT-CT-TTTC
1 TCTTTTCTTCTCCTCTTTC
32270 TTCTTTT
1 -TCTTTT
32277 TTCCTTCGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.17
18 8 0.35
19 11 0.48
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (19 bp):
TCTTTTCTTCTCCTCTTTC
Found at i:32637 original size:30 final size:29
Alignment explanation
Indices: 32524--32643 Score: 111
Period size: 30 Copynumber: 4.1 Consensus size: 29
32514 AAATGTAATT
* *
32524 TTTAGAAAA-TTTA-GGATTAAAATGAAA
1 TTTAGAAAAGTTTAGGGGTCAAAATGAAA
* * *
32551 TTTA-ATGAAAGTTTAGGGGTCTAAGTAAAA
1 TTTAGA--AAAGTTTAGGGGTCAAAATGAAA
* *
32581 TTTAAAGAAAGTTTAAGGGTCAAAATGAAA
1 TTTAGA-AAAGTTTAGGGGTCAAAATGAAA
*
32611 TTTAGGAAAAGTTTAGGGGTCAAAATGCAA
1 TTTA-GAAAAGTTTAGGGGTCAAAATGAAA
32641 TTT
1 TTT
32644 TTATTTTTAA
Statistics
Matches: 75, Mismatches: 12, Indels: 9
0.78 0.12 0.09
Matches are distributed among these distances:
26 1 0.01
27 4 0.05
28 3 0.04
29 4 0.05
30 61 0.81
31 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.32
Consensus pattern (29 bp):
TTTAGAAAAGTTTAGGGGTCAAAATGAAA
Found at i:39087 original size:72 final size:72
Alignment explanation
Indices: 38851--39103 Score: 391
Period size: 73 Copynumber: 3.5 Consensus size: 72
38841 ACATGTGAAC
* *
38851 TGAGGCTCAACTCACTTT-TCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCT
1 TGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
*
38915 CAGCGTGTCC
63 CAGCGTGTCT
* * *
38925 TGAGGCTCAACTCATTTCTCGTAATATGGGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCA
*
38990 ACGTGTCT
65 GCGTGTCT
*
38998 TGAGGCTCAACTTATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAG
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAG
39063 CGTGTCT
66 CGTGTCT
39070 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
39104 TTCTTTCAAA
Statistics
Matches: 164, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
72 67 0.41
73 69 0.42
74 28 0.17
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (72 bp):
TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAG
CGTGTCT
Found at i:39262 original size:92 final size:89
Alignment explanation
Indices: 39038--39283 Score: 277
Period size: 88 Copynumber: 2.8 Consensus size: 89
39028 TTGAATTTTG
* * * **
39038 AAAACAGAAATTGAAATTACCTC-AGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAAACAGAAATTGAAAATACCTCGAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
39102 GATTCTTTCAAAAACATAATAATG
66 GATTCTTTCAAAAACATAATAATC
* *
39126 AAAACAGAAATGGAAAATACCTCG-GTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAACAGAAATTGAAAATACCTCGAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
39190 GATTTTTTTTTGAAAAACA-GA-AATC
66 GA---TTCTTTCAAAAACATAATAATC
** *
39215 AAAAGGC-TTAATTGAAAATACCTCGACGTGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGA
1 AAAA--CAGAAATTGAAAATACCTCGA-GTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
39279 GTTGA
63 GTTGA
39284 AATTAAAACA
Statistics
Matches: 134, Mismatches: 16, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
88 58 0.43
89 7 0.05
90 16 0.12
91 13 0.10
92 40 0.30
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (89 bp):
AAAACAGAAATTGAAAATACCTCGAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTCTTTCAAAAACATAATAATC
Found at i:39728 original size:72 final size:72
Alignment explanation
Indices: 39505--39860 Score: 421
Period size: 72 Copynumber: 4.8 Consensus size: 72
39495 AGTGTGTAAT
* *
39505 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT---GAAAACAGAAATTGAAAATACC
*
39570 TCAGCATGTGAAC
63 TCAGC--GTG-TC
*
39583 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTGAAAACAGAAATTGAAAATAC
*
39647 CTCAACGTGTC
62 CTCAGCGTGTC
* ** * * *
39658 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCA
39723 GCGTGTC
66 GCGTGTC
** * *
39730 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAATAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAA-AACAGAAATTGAAAATACCT
39795 CAGCGTGTC
64 CAGCGTGTC
* *
39804 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTTGAAAAACAAAAATT-AAAA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACAGAAATTGAAAA
39861 GGCTTAACTC
Statistics
Matches: 249, Mismatches: 21, Indels: 23
0.85 0.07 0.08
Matches are distributed among these distances:
71 3 0.01
72 80 0.32
73 8 0.03
74 61 0.24
75 1 0.00
76 34 0.14
77 31 0.12
78 26 0.10
81 5 0.02
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.30
Consensus pattern (72 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTC
Found at i:39807 original size:74 final size:73
Alignment explanation
Indices: 39505--39842 Score: 428
Period size: 74 Copynumber: 4.5 Consensus size: 73
39495 AGTGTGTAAT
* **
39505 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT--TTAAAACAGAAATTGAAAATACC
*
39570 TCAGCATGTGAAC
64 TCAGC--GTG-TC
*
39583 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTT-AAAACAGAAATTGAAAATAC
*
39647 CTCAACGTGTC
63 CTCAGCGTGTC
* ** * * * *
39658 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAACAGAAATTGAAAATACCTC
39722 AGCGTGTC
66 AGCGTGTC
** *
39730 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAATAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAA-AACAGAAATTGAAAATACCT
39795 CAGCGTGTC
65 CAGCGTGTC
*
39804 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
39843 GAAAAACAAA
Statistics
Matches: 234, Mismatches: 20, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
72 62 0.26
73 10 0.04
74 65 0.28
75 1 0.00
76 34 0.15
77 31 0.13
78 26 0.11
79 5 0.02
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (73 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAACAGAAATTGAAAATACCTC
AGCGTGTC
Found at i:39809 original size:146 final size:148
Alignment explanation
Indices: 39505--39860 Score: 454
Period size: 146 Copynumber: 2.4 Consensus size: 148
39495 AGTGTGTAAT
* * *
39505 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT---GAAAACAGAAATTGAAAATACC
39570 TCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGA
63 TCAGCA-GTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTTTGAAAACAGA
39635 AATTGAAAATACCTCAACGTGTC
126 AATTGAAAATACCTCAACGTGTC
* ** * *
39658 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCA
* ** *
39723 GC-GTG-TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTT-AATAACAGAAAT
66 GCAGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTGAA-AACAGAAAT
* *
39784 TGAAATTACCTCAGCGTGTC
129 TGAAAATACCTCAACGTGTC
* *
39804 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAAACAAAAATT-AAAA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATTGAAAA
39861 GGCTTAACTC
Statistics
Matches: 179, Mismatches: 21, Indels: 14
0.84 0.10 0.07
Matches are distributed among these distances:
145 11 0.06
146 74 0.41
147 2 0.01
148 33 0.18
150 25 0.14
153 34 0.19
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.30
Consensus pattern (148 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCA
GCAGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTGAAAACAGAAATTG
AAAATACCTCAACGTGTC
Found at i:40099 original size:122 final size:117
Alignment explanation
Indices: 39780--40097 Score: 505
Period size: 122 Copynumber: 2.7 Consensus size: 117
39770 TTAATAACAG
* * * *
39780 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGA
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGA
39845 AAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAA
66 AAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAA
*
39897 AACATAAACTAAAAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
1 AA-AT----TAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
39962 TTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT-A
61 TTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAA
* * *
40018 AAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTG-
1 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGA
40082 AAAACAAAAATTAAAA
66 AAAACAAAAATTAAAA
40098 ATACCTCAAC
Statistics
Matches: 187, Mismatches: 9, Indels: 12
0.90 0.04 0.06
Matches are distributed among these distances:
115 16 0.09
116 56 0.30
117 2 0.01
118 2 0.01
120 2 0.01
121 3 0.02
122 106 0.57
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.26
Consensus pattern (117 bp):
AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGA
AAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAA
Found at i:40190 original size:72 final size:72
Alignment explanation
Indices: 40017--40229 Score: 320
Period size: 72 Copynumber: 3.0 Consensus size: 72
40007 GAGTCAATTT
* * *
40017 AAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTG-ATTTT
1 AAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
40081 GAAAACA
66 GAAAACA
* * *
40088 AAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTT
1 AAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
40153 GAAAACA
66 GAAAACA
* * * * *
40160 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGGGTTGAATTTT
1 AAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
40225 GAAAA
66 GAAAA
40230 GCATCCTTGA
Statistics
Matches: 127, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
71 53 0.42
72 74 0.58
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.30
Consensus pattern (72 bp):
AAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
GAAAACA
Found at i:48034 original size:30 final size:30
Alignment explanation
Indices: 47998--48092 Score: 172
Period size: 30 Copynumber: 3.2 Consensus size: 30
47988 NNNNNNNNNN
*
47998 GCTAGTGGAGTTGGTGGTGGAAAAAGAGTG
1 GCTAGTGGAGTTGGTGGTGGAAAAGGAGTG
*
48028 GCTAGTGGAGTTGGTGGTGGAAAAGGTGTG
1 GCTAGTGGAGTTGGTGGTGGAAAAGGAGTG
48058 GCTAGTGGAGTTGGTGGTGGAAAAGGAGTG
1 GCTAGTGGAGTTGGTGGTGGAAAAGGAGTG
48088 GCTAG
1 GCTAG
48093 GTTTTTTTTA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.23, C:0.04, G:0.48, T:0.24
Consensus pattern (30 bp):
GCTAGTGGAGTTGGTGGTGGAAAAGGAGTG
Found at i:48350 original size:50 final size:50
Alignment explanation
Indices: 48288--48388 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
48278 TAAATAGCCT
48288 TACAAAAAGGTCTATAATTATGCTAATAAATACTGGAATAAATAGTGAGA
1 TACAAAAAGGTCTATAATTATGCTAATAAATACTGGAATAAATAGTGAGA
48338 TACAAAAAGGTCTATAATTATGCTAATAAATACTGGAATAAATAGTGAGA
1 TACAAAAAGGTCTATAATTATGCTAATAAATACTGGAATAAATAGTGAGA
48388 T
1 T
48389 TTTCGAGATA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.48, C:0.08, G:0.16, T:0.29
Consensus pattern (50 bp):
TACAAAAAGGTCTATAATTATGCTAATAAATACTGGAATAAATAGTGAGA
Found at i:51469 original size:17 final size:17
Alignment explanation
Indices: 51447--51480 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
51437 GACGGGTTAT
51447 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
51464 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
51481 GGCCCAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.06, C:0.00, G:0.41, T:0.53
Consensus pattern (17 bp):
TGGGTTGTTTGGTTTAG
Found at i:52828 original size:19 final size:20
Alignment explanation
Indices: 52794--52832 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
52784 TAGGTGCCTG
52794 CTTCAAGCCATATAGAGCTTT
1 CTTCAAGCCATATAGA-CTTT
52815 CTTC-AGCC-TATAGACTTT
1 CTTCAAGCCATATAGACTTT
52833 ATCTTCTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 6 0.33
20 4 0.22
21 4 0.22
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.36
Consensus pattern (20 bp):
CTTCAAGCCATATAGACTTT
Found at i:58099 original size:51 final size:51
Alignment explanation
Indices: 58023--58178 Score: 312
Period size: 51 Copynumber: 3.1 Consensus size: 51
58013 CGAATTATGT
58023 TAACTAAATTACTGCGTTGATCTTCTTACTCTCTTTGCTATCTCGTTTTCC
1 TAACTAAATTACTGCGTTGATCTTCTTACTCTCTTTGCTATCTCGTTTTCC
58074 TAACTAAATTACTGCGTTGATCTTCTTACTCTCTTTGCTATCTCGTTTTCC
1 TAACTAAATTACTGCGTTGATCTTCTTACTCTCTTTGCTATCTCGTTTTCC
58125 TAACTAAATTACTGCGTTGATCTTCTTACTCTCTTTGCTATCTCGTTTTCC
1 TAACTAAATTACTGCGTTGATCTTCTTACTCTCTTTGCTATCTCGTTTTCC
58176 TAA
1 TAA
58179 TTCTTGTTTA
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 105 1.00
ACGTcount: A:0.19, C:0.25, G:0.10, T:0.47
Consensus pattern (51 bp):
TAACTAAATTACTGCGTTGATCTTCTTACTCTCTTTGCTATCTCGTTTTCC
Found at i:64282 original size:30 final size:30
Alignment explanation
Indices: 64246--64305 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
64236 CAGAACTAGA
64246 ACAATTCTCTGTTGGTGTACTCGAATTATC
1 ACAATTCTCTGTTGGTGTACTCGAATTATC
64276 ACAATTCTCTGTTGGTGTACTCGAATTATC
1 ACAATTCTCTGTTGGTGTACTCGAATTATC
64306 CTCTAATGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (30 bp):
ACAATTCTCTGTTGGTGTACTCGAATTATC
Found at i:70431 original size:30 final size:30
Alignment explanation
Indices: 70334--70433 Score: 75
Period size: 30 Copynumber: 3.3 Consensus size: 30
70324 CATCAATAAT
70334 ATATTAAA-TATTTTTAAATTAAA-AATTA
1 ATATTAAATTATTTTTAAATTAAATAATTA
* * * *
70362 GTTTTTAGAAAATATTTTTAAAATTACTATACA--A
1 -ATATT--AAATTATTTTT-AAATTA-AATA-ATTA
70396 A-ATTAAATTATTTTTAAATTAAATAATTA
1 ATATTAAATTATTTTTAAATTAAATAATTA
70425 ATATTAAAT
1 ATATTAAAT
70434 ACAATTAACC
Statistics
Matches: 54, Mismatches: 7, Indels: 19
0.68 0.09 0.24
Matches are distributed among these distances:
27 1 0.02
28 3 0.06
29 11 0.20
30 17 0.31
31 3 0.06
32 9 0.17
33 6 0.11
34 2 0.04
35 1 0.02
36 1 0.02
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (30 bp):
ATATTAAATTATTTTTAAATTAAATAATTA
Found at i:75993 original size:25 final size:25
Alignment explanation
Indices: 75965--76012 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
75955 AAAACAAGGG
*
75965 AAAATGAAAAGAAAAAAACAAAATC
1 AAAATCAAAAGAAAAAAACAAAATC
* *
75990 AAAATCAAAATAAAAAAATAAAA
1 AAAATCAAAAGAAAAAAACAAAA
76013 AGAAAAAGAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.79, C:0.06, G:0.04, T:0.10
Consensus pattern (25 bp):
AAAATCAAAAGAAAAAAACAAAATC
Found at i:76018 original size:25 final size:25
Alignment explanation
Indices: 75964--76018 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
75954 AAAAACAAGG
* *
75964 GAAAATGAAAAGAAAAAAACAAAAT
1 GAAAATCAAAAGAAAAAAACAAAAA
* * *
75989 CAAAATCAAAATAAAAAAATAAAAA
1 GAAAATCAAAAGAAAAAAACAAAAA
76014 GAAAA
1 GAAAA
76019 AGAGAAATTA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.78, C:0.05, G:0.07, T:0.09
Consensus pattern (25 bp):
GAAAATCAAAAGAAAAAAACAAAAA
Found at i:82274 original size:3 final size:3
Alignment explanation
Indices: 82261--82453 Score: 86
Period size: 3 Copynumber: 63.3 Consensus size: 3
82251 TGGTGTCAAC
* * * **
82261 ATT ACT ATT ATT ATT TTT CATGT ATAT ATT AGT ATT -TAT ATT ATT GCT
1 ATT ATT ATT ATT ATT ATT -AT-T AT-T ATT ATT ATT AT-T ATT ATT ATT
* * * * * * * *
82309 ATT ATT ACT ATT GTT AAT ATT CTT ATT ATT ACT ATC ATT TTT ATT CTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
82357 TTT ATT ATTT ATT ATT ATC AAT A-T ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * * * *
82402 ATT GTT GTT GTT GA-T GTT GTT GTT GTT GTT GTT ATT ATT ATT ATT
1 ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
82447 ATT ATT A
1 ATT ATT A
82454 ACATTTTTAA
Statistics
Matches: 147, Mismatches: 35, Indels: 16
0.74 0.18 0.08
Matches are distributed among these distances:
2 3 0.02
3 133 0.90
4 10 0.07
5 1 0.01
ACGTcount: A:0.26, C:0.05, G:0.07, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:85518 original size:186 final size:187
Alignment explanation
Indices: 85236--85616 Score: 532
Period size: 186 Copynumber: 2.0 Consensus size: 187
85226 TTCAGTTTTA
* * *
85236 AAATTTTCAATGCATGTACTTTTAATTTGACTTATTGATATCCCAAGCTACTTGAGTTTAAGCTG
1 AAATTTTCAATCCATATACTTTTAATTTGACTTATTGATA-CCCAAGCTACTTGAGTTCAAGCTG
** * * * *
85301 GACTTTGCAATTATCAAGATAAATTTGAGTTTCTTTTATGAATTCTTGTTTTTAGAGATCATAGA
65 GACTTTGCAATTATCAAGATAAAACTGAGTTTCTTTTATGAATTATTGTTTTGAAAGACCATAGA
* *
85366 GTAATTGTAAGAAAGTTTAATTATTAAGGTAGTAATTATATCTTCTTGTAATTACAAT
130 ATAATTGTAAGAAAGTTTAACTATTAAGGTAGTAATTATATCTTCTTGTAATTACAAT
* * *
85424 AAATTTTCAATCCCTATAC-TTTAATTTGACTTATTTGATA-GCAAGCTACTTGAGTTCAAGCTT
1 AAATTTTCAATCCATATACTTTTAATTTGACTTA-TTGATACCCAAGCTACTTGAGTTCAAGCTG
** * * *
85487 GACTTTGCAATTATTGAGGTAAAACTGAGTTTCTTTTCTGAGTTATTGTTTTGAAAGACCATAGA
65 GACTTTGCAATTATCAAGATAAAACTGAGTTTCTTTTATGAATTATTGTTTTGAAAGACCATAGA
* * *
85552 ATAGTTGTAAGAAAGTTTAACTATTAATGTAGTAATTATATCTTCTTGTAATTATAAT
130 ATAATTGTAAGAAAGTTTAACTATTAAGGTAGTAATTATATCTTCTTGTAATTACAAT
85610 AAATTTT
1 AAATTTT
85617 ATTTTTTAAA
Statistics
Matches: 170, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
186 134 0.79
187 14 0.08
188 22 0.13
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (187 bp):
AAATTTTCAATCCATATACTTTTAATTTGACTTATTGATACCCAAGCTACTTGAGTTCAAGCTGG
ACTTTGCAATTATCAAGATAAAACTGAGTTTCTTTTATGAATTATTGTTTTGAAAGACCATAGAA
TAATTGTAAGAAAGTTTAACTATTAAGGTAGTAATTATATCTTCTTGTAATTACAAT
Found at i:88659 original size:19 final size:19
Alignment explanation
Indices: 88635--88693 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
88625 ACTTTATATG
*
88635 CACACATGATTTCACTAAT
1 CACACATGATTCCACTAAT
*
88654 CACACATGGTTCCACTAAT
1 CACACATGATTCCACTAAT
* **
88673 CAGACACAATTCCACTAAT
1 CACACATGATTCCACTAAT
88692 CA
1 CA
88694 AACACCATTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.37, C:0.31, G:0.07, T:0.25
Consensus pattern (19 bp):
CACACATGATTCCACTAAT
Found at i:90077 original size:3 final size:3
Alignment explanation
Indices: 90071--90123 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
90061 ATTCAACTGC
90071 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
90119 ATA AT
1 ATA AT
90124 GCTGATGATG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:94039 original size:20 final size:20
Alignment explanation
Indices: 94014--94063 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
94004 TGGCTTAAAA
94014 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
94034 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
94051 GTGGTAGTGGATT
1 TTGGTAGTGGATT
94064 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:111695 original size:130 final size:132
Alignment explanation
Indices: 111496--111758 Score: 449
Period size: 130 Copynumber: 2.0 Consensus size: 132
111486 TGATTATTCA
* *
111496 TTTAAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATT
1 TTTAAAAATTCTTTAAAACGAAAGCAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATC
*
111561 GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAG-A-ATTTCACTCAT
66 GTGCTGGGTTGCAATCTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATATTTCACTCAT
111624 GT
131 GT
* *
111626 TTTAAAAATTCTTTAAAATGAAAGTAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTTTAAAACGAAAGCAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATC
*
111691 GTGCTGGGTTGCAATCTCCCGTTTGTTCAAAATTATCGAATATTCCTTTAGAAATATTTCACTCA
66 GTGCTGGGTTGCAATCTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAG-AATATTTCACTCA
111756 TGT
130 TGT
111759 CTTCTAAATC
Statistics
Matches: 124, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
130 110 0.89
132 1 0.01
133 13 0.10
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.37
Consensus pattern (132 bp):
TTTAAAAATTCTTTAAAACGAAAGCAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATC
GTGCTGGGTTGCAATCTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATATTTCACTCAT
GT
Found at i:111793 original size:130 final size:130
Alignment explanation
Indices: 111497--111830 Score: 435
Period size: 130 Copynumber: 2.6 Consensus size: 130
111487 GATTATTCAT
* * *
111497 TTAAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATTG
1 TTAAAAATTCTCTAAAATGAAGGCAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATCG
* *
111562 TGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTT
66 TGCTGGGTTGCAATCTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTC
* * *
111627 TTAAAAATTCTTTAAAATGAAAGTAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATCG
1 TTAAAAATTCTCTAAAATGAAGGCAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATCG
*
111692 TGCTGGGTTGCAATCTCCCGTTTGTTCAAAATTATCGAATATTCCTTTAGAAATATTTCACTCAT
66 TGCTGGGTTGCAATCTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAG--A-ATTTCACTCAT
111757 GTC
128 GTC
** * *** * *
111760 TTCTAAA-TC-CTAAAAT-AAGGCAATGCT-GAATGTTTAAAAATTCGAGGAATCATGCCCTA-C
1 TTAAAAATTCTCTAAAATGAAGGCAATGTTCG-ATGTTTGGGAATTCGGGGAATCGTGCCCTATC
111820 TGTGCTGGGTT
65 -GTGCTGGGTT
111831 AATTCGGTTT
Statistics
Matches: 181, Mismatches: 18, Indels: 10
0.87 0.09 0.05
Matches are distributed among these distances:
129 2 0.01
130 152 0.84
131 6 0.03
132 3 0.02
133 18 0.10
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.36
Consensus pattern (130 bp):
TTAAAAATTCTCTAAAATGAAGGCAATGTTCGATGTTTGGGAATTCGGGGAATCGTGCCCTATCG
TGCTGGGTTGCAATCTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTC
Found at i:113997 original size:76 final size:75
Alignment explanation
Indices: 113911--114057 Score: 240
Period size: 75 Copynumber: 1.9 Consensus size: 75
113901 CTAAGTCATA
* **
113911 TTTTTTTGTTATTATAACAATAAAAAAGTCGCCTGAATTAATACTCAATTGGATTAATTAATTTT
1 TTTTTTTGTTATTATAACAATAAAAAAATCG-CTGAATTAATACTCAATCAGATTAATTAATTTT
113976 TTGGTGTTGAC
65 TTGGTGTTGAC
* *
113987 TTTTTTTGTTATTATAACAATAAAAAAATCGCTGATTTAATACTCAATCAGATTAATTGATTTTT
1 TTTTTTTGTTATTATAACAATAAAAAAATCGCTGAATTAATACTCAATCAGATTAATTAATTTTT
114052 TGGTGT
66 TGGTGT
114058 CGAGTTCTTT
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
75 36 0.55
76 30 0.45
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (75 bp):
TTTTTTTGTTATTATAACAATAAAAAAATCGCTGAATTAATACTCAATCAGATTAATTAATTTTT
TGGTGTTGAC
Found at i:116391 original size:19 final size:18
Alignment explanation
Indices: 116362--116397 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
116352 AACCGAACTC
*
116362 AATTTATTCAATTTGATG
1 AATTTATTCAACTTGATG
116380 AATTTAATTCAACTTGAT
1 AATTT-ATTCAACTTGAT
116398 TGATGATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.47
Consensus pattern (18 bp):
AATTTATTCAACTTGATG
Found at i:119335 original size:69 final size:67
Alignment explanation
Indices: 119217--119344 Score: 175
Period size: 69 Copynumber: 1.9 Consensus size: 67
119207 ACAATATAAG
* **
119217 GGTTTTGCCTTTTAACTTAATTAGTAAACATTTATCAAAACAACATAGTTTTACCTTTTAACTTA
1 GGTTTTGACTTTTAACTTAAAAAGTAAACATTTATCAAAACAACATAGTTTTACCTTTTAACTTA
119282 AT
66 AT
** * *
119284 GGTTTTGACTTTTAACTTTAAAAAGGTAAACATTTATCAAAATGACGTAGTTTTGCCTTTT
1 GGTTTTGACTTTTAAC-TTAAAAA-GTAAACATTTATCAAAACAACATAGTTTTACCTTTT
119345 CTTATTTGGA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
67 15 0.29
68 5 0.10
69 32 0.62
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (67 bp):
GGTTTTGACTTTTAACTTAAAAAGTAAACATTTATCAAAACAACATAGTTTTACCTTTTAACTTA
AT
Found at i:122483 original size:28 final size:26
Alignment explanation
Indices: 122436--122488 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 26
122426 GAGATATAAT
122436 TTTTATCTAATTAAAAATTAATTATTGA
1 TTTTATC-AATTAAAAATT-ATTATTGA
122464 TTTTATC-ATTAAGAATATTATTATT
1 TTTTATCAATTAA-AA-ATTATTATT
122489 TATGTATATC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
26 5 0.22
27 8 0.35
28 10 0.43
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.53
Consensus pattern (26 bp):
TTTTATCAATTAAAAATTATTATTGA
Found at i:123504 original size:26 final size:27
Alignment explanation
Indices: 123454--123514 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
123444 AAAAATAATT
123454 TTTAAAATTTAAAATATTTAGAAAAAA
1 TTTAAAATTTAAAATATTTAGAAAAAA
* * *
123481 TTTAAAATTTAAATTTTTTAAAAAAAA
1 TTTAAAATTTAAAATATTTAGAAAAAA
123508 TTCTAAA
1 TT-TAAA
123515 GGATATATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 26 0.87
28 4 0.13
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (27 bp):
TTTAAAATTTAAAATATTTAGAAAAAA
Found at i:124866 original size:3 final size:3
Alignment explanation
Indices: 124841--124902 Score: 76
Period size: 3 Copynumber: 21.3 Consensus size: 3
124831 AGTTTTTAGT
* *
124841 TTA TT- TTA TTA ATA -TA GTTA TTA TTA TTA TTA TTA TTA TTA CTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
124885 TTA TTA TTA TT- TTA TTA T
1 TTA TTA TTA TTA TTA TTA T
124903 ACTTACATAC
Statistics
Matches: 52, Mismatches: 3, Indels: 8
0.83 0.05 0.13
Matches are distributed among these distances:
2 6 0.12
3 44 0.85
4 2 0.04
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:125041 original size:13 final size:13
Alignment explanation
Indices: 125010--125034 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
125000 CCATATTTTT
125010 TTTATATATATAG
1 TTTATATATATAG
125023 TTTATATATATA
1 TTTATATATATA
125035 TTATATACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (13 bp):
TTTATATATATAG
Found at i:126154 original size:45 final size:44
Alignment explanation
Indices: 126089--126178 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 44
126079 AACTAGGTAC
*
126089 CAATTTTGGGTGTTACGAGGGTGCTAATCCTTCCTCGTACGTAA
1 CAATTTTGGGCGTTACGAGGGTGCTAATCCTTCCTCGTACGTAA
*
126133 CNAATTTTGGGCG-TATCGAGGGTGCTAATCCTTCCTCGTGCGTAA
1 C-AATTTTGGGCGTTA-CGAGGGTGCTAATCCTTCCTCGTACGTAA
126178 C
1 C
126179 CGACTCCCGA
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
44 3 0.07
45 39 0.93
ACGTcount: A:0.19, C:0.22, G:0.26, T:0.32
Consensus pattern (44 bp):
CAATTTTGGGCGTTACGAGGGTGCTAATCCTTCCTCGTACGTAA
Found at i:127531 original size:62 final size:62
Alignment explanation
Indices: 127428--127552 Score: 196
Period size: 62 Copynumber: 2.0 Consensus size: 62
127418 TCTTTTTTTT
* *
127428 GCATTCATGCATCAACATTACATTTCATCGCATGCAATAAATTTCCTAAAATCCAAAAATAC
1 GCATTCATGCATCAACACTACATTTCATCGCATACAATAAATTTCCTAAAATCCAAAAATAC
* * * *
127490 GCATTCATGCATCAACACTACGTTTCATTGCATACAGTAAATTTCCTAAAATCCAAAAGTAC
1 GCATTCATGCATCAACACTACATTTCATCGCATACAATAAATTTCCTAAAATCCAAAAATAC
127552 G
1 G
127553 TCGAGTTTAG
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.38, C:0.24, G:0.09, T:0.29
Consensus pattern (62 bp):
GCATTCATGCATCAACACTACATTTCATCGCATACAATAAATTTCCTAAAATCCAAAAATAC
Found at i:134236 original size:44 final size:45
Alignment explanation
Indices: 134145--134459 Score: 327
Period size: 44 Copynumber: 7.1 Consensus size: 45
134135 NNNNNNNNNN
* * *
134145 CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAG
1 CAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAG
* * * *
134190 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAG
1 CAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAG
* * *
134234 CAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-G
1 CAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAG
* * * *
134277 CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAG
1 CAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAG
* * *
134322 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAG
* * * * * * *
134366 CAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAGATA-
1 CAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAG
* * * * *
134409 CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAG
1 CAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAG
134454 CAGATC
1 CAGATC
134460 GACGATGGCG
Statistics
Matches: 219, Mismatches: 45, Indels: 12
0.79 0.16 0.04
Matches are distributed among these distances:
43 43 0.20
44 127 0.58
45 49 0.22
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (45 bp):
CAGATCTTGTCTTCCTATATTGGTCGCGAAGTAGATCGAAGATAG
Found at i:134382 original size:132 final size:132
Alignment explanation
Indices: 134145--134459 Score: 549
Period size: 132 Copynumber: 2.4 Consensus size: 132
134135 NNNNNNNNNN
134145 CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
1 CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
* * * *
134210 TGGCGTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGA
66 TGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGA
*
134275 TG
131 TA
*
134277 CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTAT
1 CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
*
134342 TGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGA
66 TGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGA
134407 TA
131 TA
* *
134409 CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATC
1 CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATC
134460 GACGATGGCG
Statistics
Matches: 173, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 173 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (132 bp):
CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
TGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGA
TA
Found at i:135809 original size:3 final size:3
Alignment explanation
Indices: 135784--135841 Score: 61
Period size: 3 Copynumber: 20.3 Consensus size: 3
135774 GTTTTTTAGT
* *
135784 TTA TT- TTA TTA ATA -TA GTTA TTA TTA TTA TTA TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
135828 TTA TT- TT- TTA TTA T
1 TTA TTA TTA TTA TTA T
135842 ACTTACATAC
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
2 8 0.17
3 38 0.79
4 2 0.04
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:135980 original size:13 final size:13
Alignment explanation
Indices: 135949--135973 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
135939 CCATATTTTT
135949 TTTATATATATAG
1 TTTATATATATAG
135962 TTTATATATATA
1 TTTATATATATA
135974 TTATATACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (13 bp):
TTTATATATATAG
Found at i:151791 original size:151 final size:151
Alignment explanation
Indices: 151517--151799 Score: 548
Period size: 151 Copynumber: 1.9 Consensus size: 151
151507 CAGATAGCAG
*
151517 TGATTGTTAAAAACAAAAAGAAAAAACAGAAGGTTGTATTTTTTTCTTTGTTCCTTTCGATTTTT
1 TGATTGTTAAAAACAAAAAGAAAAAACAAAAGGTTGTATTTTTTTCTTTGTTCCTTTCGATTTTT
*
151582 ACATACATATACATATATTTCTTTATTTTCTATCTATTTAACATAAAAATATACAACAAATAAAA
66 ACATACATATACATATATGTCTTTATTTTCTATCTATTTAACATAAAAATATACAACAAATAAAA
151647 AATAAATAAATTTTTTACCAC
131 AATAAATAAATTTTTTACCAC
151668 TGATTGTTAAAAACAAAAAGAAAAAACAAAAGGTTGTATTTTTTTCTTTGTTCCTTTCGATTTTT
1 TGATTGTTAAAAACAAAAAGAAAAAACAAAAGGTTGTATTTTTTTCTTTGTTCCTTTCGATTTTT
151733 ACATACATATACATATATGTCTTTATTTTCTATCTATTTAACATAAAAATATACAACAAATAAAA
66 ACATACATATACATATATGTCTTTATTTTCTATCTATTTAACATAAAAATATACAACAAATAAAA
151798 AA
131 AA
151800 AAAACAAAAA
Statistics
Matches: 130, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
151 130 1.00
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (151 bp):
TGATTGTTAAAAACAAAAAGAAAAAACAAAAGGTTGTATTTTTTTCTTTGTTCCTTTCGATTTTT
ACATACATATACATATATGTCTTTATTTTCTATCTATTTAACATAAAAATATACAACAAATAAAA
AATAAATAAATTTTTTACCAC
Found at i:151939 original size:11 final size:11
Alignment explanation
Indices: 151923--151952 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
151913 TTCCCCCCTC
151923 CCTTCTCTCTT
1 CCTTCTCTCTT
151934 CCTTCTCTCTT
1 CCTTCTCTCTT
*
151945 CCCTCTCT
1 CCTTCTCT
151953 GTTCTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (11 bp):
CCTTCTCTCTT
Found at i:152106 original size:11 final size:11
Alignment explanation
Indices: 152090--152123 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
152080 TTCCCCCCTC
152090 CCTTCTCTCTT
1 CCTTCTCTCTT
152101 CCTTCTCTCTT
1 CCTTCTCTCTT
*
152112 CCCTCTCTCTT
1 CCTTCTCTCTT
152123 C
1 C
152124 TTTTTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (11 bp):
CCTTCTCTCTT
Found at i:152648 original size:23 final size:23
Alignment explanation
Indices: 152604--152649 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
152594 ATATTACCAT
*
152604 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
152627 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
152650 CCTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:152896 original size:19 final size:19
Alignment explanation
Indices: 152874--152910 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
152864 TATATGCATA
152874 TATTACCTAAATATTTTAG
1 TATTACCTAAATATTTTAG
**
152893 TATTATGTAAATATTTTA
1 TATTACCTAAATATTTTA
152911 ACATTATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (19 bp):
TATTACCTAAATATTTTAG
Found at i:152916 original size:19 final size:19
Alignment explanation
Indices: 152881--152917 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
152871 ATATATTACC
**
152881 TAAATATTTTAGTATTATG
1 TAAATATTTTAACATTATG
152900 TAAATATTTTAACATTAT
1 TAAATATTTTAACATTAT
152918 ATTATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATG
Found at i:154510 original size:32 final size:32
Alignment explanation
Indices: 154474--154536 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
154464 TTAATTTTTT
* *
154474 AATTAAATTTAATTCTCAATCTTTTAAAAAAG
1 AATTAAATTTAACTATCAATCTTTTAAAAAAG
*
154506 AATTAAATTTAACTATTAATCTTTTAAAAAA
1 AATTAAATTTAACTATCAATCTTTTAAAAAA
154537 AAGTCAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.41
Consensus pattern (32 bp):
AATTAAATTTAACTATCAATCTTTTAAAAAAG
Found at i:157637 original size:78 final size:77
Alignment explanation
Indices: 157508--157884 Score: 257
Period size: 78 Copynumber: 4.9 Consensus size: 77
157498 ATTCAGCCGG
* * * * *
157508 TTATGGATAGGATTCAGTCCTAAAGGCACTTT-TATTTTGCGAGAACGAGTGTGCTTAGGAATCG
1 TTATGGATAGGATCCAGTCCT-ACGGCA-TTTCTATCTTGCGAGAACGAGTGTGCATAGGAATCC
*
157572 TTTCTCTTGGAGAA
64 TTTCTCTTGAAGAA
* * *
157586 TTATGGATAGGATCC-GATCCTGACGGCATTTCTATCTTGCGAGAACGAGTGTGAATAAGAAACC
1 TTATGGATAGGATCCAG-TCCT-ACGGCATTTCTATCTTGCGAGAACGAGTGTGCATAGGAATCC
* *
157650 TTTCTTTTGAAGGA
64 TTTCTCTTGAAGAA
* * ** * *
157664 TCATGGATAGAATCCAGT-C-ACGGCACATCTAACTTGCGAGAACAAGTGTGCATAGGAATCCTT
1 TTATGGATAGGATCCAGTCCTACGGCATTTCTATCTTGCGAGAACGAGTGTGCATAGGAATCCTT
* *
157727 TCTCTCGAAGGA
66 TCTCTTGAAGAA
* * * * * * * * * ** *
157739 TTACGGATTGGATTCACTCTTGATGGCACTTCTATCTTACAAGAATAAGTGTGAATAGGAA--CT
1 TTATGGATAGGATCCAGTCCT-ACGGCATTTCTATCTTGCGAGAACGAGTGTGCATAGGAATCCT
* * *
157802 ATT-TTTTCAACGGA
65 -TTCTCTTGAA-GAA
* * * * * *
157816 TTATGGATAGTATCCAGTCCTGACGACACTTCTATCTTGTGAGAATGAGTGTGAATAGGAA-CCA
1 TTATGGATAGGATCCAGTCCT-ACGGCATTTCTATCTTGCGAGAACGAGTGTGCATAGGAATCC-
157880 TTTCT
64 TTTCT
157885 TTTTCCAGAT
Statistics
Matches: 236, Mismatches: 52, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
75 59 0.25
76 6 0.03
77 59 0.25
78 109 0.46
79 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (77 bp):
TTATGGATAGGATCCAGTCCTACGGCATTTCTATCTTGCGAGAACGAGTGTGCATAGGAATCCTT
TCTCTTGAAGAA
Found at i:157727 original size:75 final size:77
Alignment explanation
Indices: 157544--157739 Score: 218
Period size: 75 Copynumber: 2.6 Consensus size: 77
157534 CACTTTTATT
* * * * * *
157544 TTGCGAGAACGAGTGTGCTTAGGAATCGTTTCTCTTGGAGAATTATGGATAGGATCCGATCCTGA
1 TTGCGAGAACGAGTGTGCATAGGAATCCTTTCTCTTGAAGGATCATGGATAGAATCCGATCC-GA
** *
157609 CGGCATTTCTATC
65 CGGCACATCTAAC
* * * *
157622 TTGCGAGAACGAGTGTGAATAAGAAACCTTTCTTTTGAAGGATCATGGATAGAATCC-AGT-C-A
1 TTGCGAGAACGAGTGTGCATAGGAATCCTTTCTCTTGAAGGATCATGGATAGAATCCGA-TCCGA
157684 CGGCACATCTAAC
65 CGGCACATCTAAC
* *
157697 TTGCGAGAACAAGTGTGCATAGGAATCCTTTCTCTCGAAGGAT
1 TTGCGAGAACGAGTGTGCATAGGAATCCTTTCTCTTGAAGGAT
157740 TACGGATTGG
Statistics
Matches: 98, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
75 48 0.49
77 2 0.02
78 48 0.49
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (77 bp):
TTGCGAGAACGAGTGTGCATAGGAATCCTTTCTCTTGAAGGATCATGGATAGAATCCGATCCGAC
GGCACATCTAAC
Found at i:159326 original size:16 final size:17
Alignment explanation
Indices: 159298--159330 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
159288 AAATAGATTT
159298 TTAATTAAAAATTTTAA
1 TTAATTAAAAATTTTAA
159315 TTAATT-AAAATTTTAA
1 TTAATTAAAAATTTTAA
159331 ACCTAAACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTAATTAAAAATTTTAA
Found at i:159892 original size:22 final size:22
Alignment explanation
Indices: 159851--159892 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
159841 CCAATAGGCT
* *
159851 CAAATCCAAAAAAGTCAAAAGC
1 CAAACCCAAAAAAGTAAAAAGC
*
159873 CAAACCCAAAAATGTAAAAA
1 CAAACCCAAAAAAGTAAAAA
159893 AAATTAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.62, C:0.21, G:0.07, T:0.10
Consensus pattern (22 bp):
CAAACCCAAAAAAGTAAAAAGC
Found at i:166664 original size:15 final size:18
Alignment explanation
Indices: 166639--166676 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
166629 TAGTGAAAAG
166639 AAAATTGGAAA-GATA-A
1 AAAATTGGAAAGGATAGA
166655 AAAATT-GAAAGGATAGA
1 AAAATTGGAAAGGATAGA
166672 AAAAT
1 AAAAT
166677 AAAATGATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 4 0.20
16 10 0.50
17 6 0.30
ACGTcount: A:0.63, C:0.00, G:0.18, T:0.18
Consensus pattern (18 bp):
AAAATTGGAAAGGATAGA
Found at i:167572 original size:55 final size:55
Alignment explanation
Indices: 167464--167838 Score: 417
Period size: 55 Copynumber: 6.7 Consensus size: 55
167454 TAGACATGCT
** * * *
167464 ACATAACAATTTATTTAAACATATAAACAACCGATTCAAAAAAAGCAGCATTCCA
1 ACATAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCA
* * * * * *
167519 ATATAACAATCAATTTGAACATATAAACAATCAATTTAAAAGAAGTAGTATTCCA
1 ACATAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCA
* * * *
167574 ACATAACAATCGACTTAAATATATAAACAATCGATTCAAAAGAAACAATATTCCA
1 ACATAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCA
* * *
167629 ACATAACAATCGATTTAAACATATAAATAATCTATTCAAAAGAAAAAGAAGCAATATTCCA
1 ACATAACAATCGATTTAAACATATAAACAATCGATTC------AAAAGAAGCAGTATTCCA
* * *
167690 CCATAACAATTGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCTA
1 ACATAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCA
* * * * * *
167745 ACATGACAATCAATTTAAACATATAAACAATCGACTCAAACGAAGCAATATTCTA
1 ACATAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCA
* * * *
167800 GCATGACAATCGATTTAAACATAAAAATAATCGATTCAA
1 ACATAACAATCGATTTAAACATATAAACAATCGATTCAA
167839 TCCAAAATCA
Statistics
Matches: 271, Mismatches: 43, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
55 221 0.82
61 50 0.18
ACGTcount: A:0.51, C:0.17, G:0.07, T:0.25
Consensus pattern (55 bp):
ACATAACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCA
Found at i:167771 original size:171 final size:167
Alignment explanation
Indices: 167464--167838 Score: 466
Period size: 171 Copynumber: 2.2 Consensus size: 167
167454 TAGACATGCT
** * * * *
167464 ACATAACAATTTATTTAAACATATAAACAACCGATTC--AAAAAAAGCAGCATTCCAATATAACA
1 ACATAACAATCGATTTAAACATATAAATAATCGATTCAAAAAAAAAGAAGCATTCCAACATAACA
* * * *
167527 ATCAATTTGAACATATAAACAATCAATTTAAAAGAAGTAGTATTCCAACATAACAATCGACTTAA
66 ATCAATTTAAACATATAAACAATCAATTCAAAAGAAGCAGTATTCCAACATAACAATCAACTTAA
* *
167592 ATATATAAACAATCGATTCAAAAGAAACAATATTCCA
131 ACATATAAACAATCGACTCAAAAGAAACAATATTCCA
* *
167629 ACATAACAATCGATTTAAACATATAAATAATCTATTCAAAAGAAAAAGAAGCAATATTCCACCAT
1 ACATAACAATCGATTTAAACATATAAATAATCGATTCAAAA-AAAAAGAAGC---ATTCCAACAT
** * * * *
167694 AACAATTGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCTAACATGACAATCAAT
62 AACAATCAATTTAAACATATAAACAATCAATTCAAAAGAAGCAGTATTCCAACATAACAATCAAC
* * *
167759 TTAAACATATAAACAATCGACTCAAACGAAGCAATATTCTA
127 TTAAACATATAAACAATCGACTCAAAAGAAACAATATTCCA
* * *
167800 GCATGACAATCGATTTAAACATAAAAATAATCGATTCAA
1 ACATAACAATCGATTTAAACATATAAATAATCGATTCAA
167839 TCCAAAATCA
Statistics
Matches: 177, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
165 32 0.18
167 2 0.01
168 9 0.05
171 134 0.76
ACGTcount: A:0.51, C:0.17, G:0.07, T:0.25
Consensus pattern (167 bp):
ACATAACAATCGATTTAAACATATAAATAATCGATTCAAAAAAAAAGAAGCATTCCAACATAACA
ATCAATTTAAACATATAAACAATCAATTCAAAAGAAGCAGTATTCCAACATAACAATCAACTTAA
ACATATAAACAATCGACTCAAAAGAAACAATATTCCA
Found at i:168058 original size:20 final size:20
Alignment explanation
Indices: 168033--168071 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
168023 TTAATGATCA
*
168033 AATTTGTATTGAATAATAAT
1 AATTTGTATTGAACAATAAT
168053 AATTTGTATTGAACAATAA
1 AATTTGTATTGAACAATAA
168072 CACACAAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.03, G:0.10, T:0.41
Consensus pattern (20 bp):
AATTTGTATTGAACAATAAT
Found at i:168774 original size:5 final size:5
Alignment explanation
Indices: 168764--168788 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
168754 GGGAGAGTAG
168764 AATTA AATTA AATTA AATTA AATTA
1 AATTA AATTA AATTA AATTA AATTA
168789 TTATTTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AATTA
Found at i:168841 original size:29 final size:29
Alignment explanation
Indices: 168778--168843 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
168768 AAATTAAATT
* *
168778 AAATTAAATTATTATTTTTATTATTAAAT
1 AAATTAAATTATTATTTATATTATTAAAA
* *
168807 AGATTAATTTAATT-TTTATATTATTAAAA
1 AAATTAAATT-ATTATTTATATTATTAAAA
168836 AAATTAAA
1 AAATTAAA
168844 AAAATCTAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
29 27 0.90
30 3 0.10
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (29 bp):
AAATTAAATTATTATTTATATTATTAAAA
Found at i:170429 original size:13 final size:13
Alignment explanation
Indices: 170377--170440 Score: 65
Period size: 13 Copynumber: 4.9 Consensus size: 13
170367 ACACCTAAAA
*
170377 TTTTCAAAAGTAC
1 TTTTCAAAAGCAC
* *
170390 TTCTCAAAAGTAC
1 TTTTCAAAAGCAC
* * *
170403 TTTTCCACATCAC
1 TTTTCAAAAGCAC
*
170416 TTTTTAAAAGCAC
1 TTTTCAAAAGCAC
170429 TTTTCAAAAGCA
1 TTTTCAAAAGCA
170441 TTGCCAAACA
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 40 1.00
ACGTcount: A:0.36, C:0.22, G:0.06, T:0.36
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:172870 original size:12 final size:12
Alignment explanation
Indices: 172853--172882 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
172843 TAAAAAAATC
172853 TCACCTTAGACA
1 TCACCTTAGACA
172865 TCACCTTAGACA
1 TCACCTTAGACA
172877 TCACCT
1 TCACCT
172883 AAGATAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.30, C:0.37, G:0.07, T:0.27
Consensus pattern (12 bp):
TCACCTTAGACA
Found at i:174842 original size:13 final size:13
Alignment explanation
Indices: 174824--174850 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
174814 ATCCATTGAT
174824 GTACATAAAAGTA
1 GTACATAAAAGTA
174837 GTACATAAAAGTA
1 GTACATAAAAGTA
174850 G
1 G
174851 ATAACTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.07, G:0.19, T:0.22
Consensus pattern (13 bp):
GTACATAAAAGTA
Found at i:180538 original size:20 final size:21
Alignment explanation
Indices: 180515--180561 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 21
180505 GACAAAAAAA
**
180515 TTATATTTTTATGTATTT-AT
1 TTATATTTAAATGTATTTAAT
*
180535 TTAT-TTTAAATGTTTTTAAT
1 TTATATTTAAATGTATTTAAT
180555 TTATATT
1 TTATATT
180562 CGTCACATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 10 0.45
20 10 0.45
21 2 0.09
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (21 bp):
TTATATTTAAATGTATTTAAT
Found at i:194664 original size:186 final size:186
Alignment explanation
Indices: 194470--204706 Score: 20474
Period size: 186 Copynumber: 55.0 Consensus size: 186
194460 GAGTTATCGG
194470 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
194535 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
194600 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
194656 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
194721 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
194786 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
194842 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
194907 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
194972 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
195028 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
195093 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
195158 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
195214 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
195279 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
195344 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
195400 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
195465 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
195530 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
195586 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
195651 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
195716 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
195772 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
195837 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
195902 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
195958 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
196023 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
196088 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
196144 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
196209 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
196274 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
196330 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
196395 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
196460 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
196516 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
196581 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
196646 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
196702 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
196767 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
196832 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
196888 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
196953 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
197018 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
197074 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
197139 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
197204 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
197260 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
197325 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
197390 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
197446 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
197511 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
197576 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
197632 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
197697 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
197762 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
197818 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
197883 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
197948 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
198004 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
198069 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
198134 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
198190 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
198255 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
198320 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
198376 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
198441 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
198506 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
198562 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
198627 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
198692 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
198748 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
198813 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
198878 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
198934 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
198999 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
199064 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
199120 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
199185 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
199250 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
199306 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
199371 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
199436 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
199492 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
199557 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
199622 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
199678 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
199743 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
199808 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
199864 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
199929 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
199994 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
200050 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
200115 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
200180 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
200236 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
200301 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
200366 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
200422 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
200487 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
200552 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
200608 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
200673 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
200738 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
200794 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
200859 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
200924 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
200980 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
201045 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
201110 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
201166 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
201231 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
201296 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
201352 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
201417 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
201482 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
201538 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
201603 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
201668 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
201724 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
201789 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
201854 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
201910 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
201975 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
202040 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
202096 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
202161 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
202226 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
202282 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
202347 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
202412 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
202468 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
202533 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
202598 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
202654 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
202719 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
202784 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
202840 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
202905 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
202970 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
203026 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
203091 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
203156 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
203212 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
203277 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
203342 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
203398 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
203463 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
203528 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
203584 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
203649 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
203714 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
203770 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
203835 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
203900 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
203956 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
204021 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
204086 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
204142 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
204207 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
204272 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
204328 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
204393 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
204458 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
204514 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
204579 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
204644 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
204700 CTTCAAT
1 CTTCAAT
204707 ATATATATAT
Statistics
Matches: 10051, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
186 10051 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.31
Consensus pattern (186 bp):
CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
Found at i:204356 original size:142 final size:141
Alignment explanation
Indices: 204210--204479 Score: 348
Period size: 142 Copynumber: 1.9 Consensus size: 141
204200 AATCCGCTCC
* * *
204210 ACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCAATCTACTCCGCTGTAA-TCTCAGAGAGAT
1 ACTGTAACTTCAGAGAGATAAGATCT-CTA-CTTCAATCCACTCCACTGTAACT-TCAGAGAGAT
* * *
204273 AAGATCT-CTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGACTTCAATCT
63 AAGAT-TACTAGCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCT
204337 GATGTGATCTACTCT
127 GATGTGATCTACTCT
* * * * *
204352 ACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAG
1 ACTGTAACTTCAGAGAGATAAGAT-CTCTACTTCAATCCACTCCACTGTAACTTCAGAGAGATAA
* * *
204417 GATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTG
65 GATTACTAGCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCTG
204480 CTCCACTGTA
Statistics
Matches: 110, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
141 1 0.01
142 105 0.95
143 3 0.03
144 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (141 bp):
ACTGTAACTTCAGAGAGATAAGATCTCTACTTCAATCCACTCCACTGTAACTTCAGAGAGATAAG
ATTACTAGCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCTGATG
TGATCTACTCT
Found at i:204542 original size:142 final size:141
Alignment explanation
Indices: 204396--204665 Score: 348
Period size: 142 Copynumber: 1.9 Consensus size: 141
204386 AATCCGCTCC
* * *
204396 ACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCAATCTACTCCGCTGTAA-TCTCAGAGAGAT
1 ACTGTAACTTCAGAGAGATAAGATCT-CTA-CTTCAATCCACTCCACTGTAACT-TCAGAGAGAT
* * *
204459 AAGATCT-CTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGACTTCAATCT
63 AAGAT-TACTAGCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCT
204523 GATGTGATCTACTCT
127 GATGTGATCTACTCT
* * * * *
204538 ACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAG
1 ACTGTAACTTCAGAGAGATAAGAT-CTCTACTTCAATCCACTCCACTGTAACTTCAGAGAGATAA
* * *
204603 GATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTG
65 GATTACTAGCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCTG
204666 CTCCACTGTA
Statistics
Matches: 110, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
141 1 0.01
142 105 0.95
143 3 0.03
144 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (141 bp):
ACTGTAACTTCAGAGAGATAAGATCTCTACTTCAATCCACTCCACTGTAACTTCAGAGAGATAAG
ATTACTAGCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCTGATG
TGATCTACTCT
Found at i:204631 original size:44 final size:44
Alignment explanation
Indices: 194485--204706 Score: 6610
Period size: 44 Copynumber: 220.0 Consensus size: 44
194475 ATCTGATGTG
* * * *
194485 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
194529 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
194573 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
194617 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
194661 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
194715 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
194759 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
194803 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
194847 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
194901 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
194945 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
194989 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
195033 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
195087 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
195131 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
195175 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
195219 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
195273 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
195317 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
195361 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
195405 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
195459 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
195503 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
195547 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
195591 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
195645 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
195689 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
195733 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
195777 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
195831 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
195875 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
195919 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
195963 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
196017 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
196061 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
196105 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
196149 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
196203 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
196247 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
196291 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
196335 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
196389 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
196433 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
196477 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
196521 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
196575 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
196619 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
196663 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
196707 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
196761 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
196805 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
196849 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
196893 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
196947 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
196991 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
197035 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
197079 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
197133 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
197177 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
197221 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
197265 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
197319 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
197363 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
197407 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
197451 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
197505 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
197549 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
197593 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
197637 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
197691 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
197735 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
197779 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
197823 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
197877 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
197921 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
197965 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
198009 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
198063 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
198107 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
198151 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
198195 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
198249 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
198293 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
198337 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
198381 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
198435 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
198479 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
198523 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
198567 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
198621 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
198665 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
198709 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
198753 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
198807 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
198851 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
198895 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
198939 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
198993 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
199037 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
199081 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
199125 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
199179 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
199223 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
199267 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
199311 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
199365 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
199409 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
199453 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
199497 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
199551 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
199595 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
199639 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
199683 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
199737 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
199781 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
199825 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
199869 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
199923 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
199967 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
200011 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
200055 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
200109 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
200153 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
200197 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
200241 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
200295 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
200339 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
200383 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
200427 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
200481 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
200525 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
200569 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
200613 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
200667 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
200711 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
200755 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
200799 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
200853 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
200897 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
200941 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
200985 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
201039 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
201083 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
201127 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
201171 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
201225 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
201269 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
201313 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
201357 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
201411 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
201455 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
201499 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
201543 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
201597 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
201641 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
201685 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
201729 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
201783 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
201827 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
201871 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
201915 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
201969 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
202013 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
202057 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
202101 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
202155 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
202199 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
202243 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
202287 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
202341 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
202385 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
202429 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
202473 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
202527 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
202571 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
202615 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
202659 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
202713 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
202757 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
202801 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
202845 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
202899 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
202943 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
202987 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
203031 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
203085 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
203129 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
203173 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
203217 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
203271 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
203315 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
203359 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
203403 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
203457 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
203501 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
203545 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
203589 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
203643 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
203687 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
203731 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
203775 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
203829 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
203873 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
203917 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
203961 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
204015 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
204059 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
204103 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
204147 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
204201 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
204245 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
204289 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
204333 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
204387 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
204431 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
204475 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * *
204519 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATC-----T-A-CT-C-C-ACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
204573 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* *
204617 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * *
204661 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAG-CTTCA
204705 AT
1 AT
204707 ATATATATAT
Statistics
Matches: 8050, Mismatches: 1150, Indels: 1956
0.72 0.10 0.18
Matches are distributed among these distances:
42 55 0.01
43 220 0.03
44 5560 0.69
45 109 0.01
46 54 0.01
47 108 0.01
49 54 0.01
51 108 0.01
52 54 0.01
53 54 0.01
54 1512 0.19
55 162 0.02
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (44 bp):
ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAGCTTCA
Found at i:204893 original size:44 final size:44
Alignment explanation
Indices: 204829--204913 Score: 134
Period size: 44 Copynumber: 1.9 Consensus size: 44
204819 AATCATACAT
* *
204829 GCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTG
1 GCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTG
* *
204873 GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
1 GCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCT
204914 GAAATTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (44 bp):
GCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTG
Found at i:227370 original size:19 final size:20
Alignment explanation
Indices: 227348--227385 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
227338 TTTTTTTTGT
227348 AAAATT-TAATTTAAATATA
1 AAAATTATAATTTAAATATA
*
227367 AAAATTATATTTTAAATAT
1 AAAATTATAATTTAAATAT
227386 TGAAATATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AAAATTATAATTTAAATATA
Found at i:227634 original size:6 final size:6
Alignment explanation
Indices: 227623--227656 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
227613 GGCAACGGGC
227623 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
227657 GTAAAATTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:235424 original size:215 final size:215
Alignment explanation
Indices: 235053--235483 Score: 704
Period size: 215 Copynumber: 2.0 Consensus size: 215
235043 CTAGCCCAAC
* * *
235053 TTGAGAGGAGACAAACCCTAGTTCGACTACTTTCCATTTGTTGTCGTAAGCTGCAATGGGATGAT
1 TTGAGAGGAGACAAACCCTAGTTCGACCACTTTCCATTTGTTGTCATAAACTGCAATGGGATGAT
* *
235118 GAGAGAAAACAAGAACCACAATCCCAAGTTGTTGTACTCACGACCTACAAGCCTGTTATCAAGGA
66 GAGAGAAAACAAGAACCACAATCCCAAGTTATTGTACTCACAACCTACAAGCCTGTTATCAAGGA
* * * * *
235183 GAAGTCAAGATCGAAGGGTCCAAAA-GGTTTGCCATTTACATCGTGGAGCATGTCGAGG-CCATC
131 GAACTCAAGACCGAAGGGTCCAAAAGGGCTT-CCATTTACATCGTAGAGCATGTCG-GGACCACC
235246 GACCGCCATAAATCTCGAGTTT
194 GACCGCCATAAATCTCGAGTTT
* *
235268 TTGAGAGGAGACAAACCCTAGTTTGACCACTTTCCATTTGTTGTCATAAACTGCAGTGGGATGAT
1 TTGAGAGGAGACAAACCCTAGTTCGACCACTTTCCATTTGTTGTCATAAACTGCAATGGGATGAT
*
235333 GAGAGAAAACGAGAACCACAATCCCAAGTTATTGTACTCACAACCTACAAGCCTGTTATCAAGGA
66 GAGAGAAAACAAGAACCACAATCCCAAGTTATTGTACTCACAACCTACAAGCCTGTTATCAAGGA
235398 GAACTCAAGACCGAAGGGTCCAAAAGGGCTTCCATTTACATCGTAGAGCATGTCGGGACCACCGA
131 GAACTCAAGACCGAAGGGTCCAAAAGGGCTTCCATTTACATCGTAGAGCATGTCGGGACCACCGA
*
235463 CCGCCGTAAATCTCGAGTTT
196 CCGCCATAAATCTCGAGTTT
235483 T
1 T
235484 CAAGAAGGCA
Statistics
Matches: 200, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
214 2 0.01
215 194 0.97
216 4 0.02
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.24
Consensus pattern (215 bp):
TTGAGAGGAGACAAACCCTAGTTCGACCACTTTCCATTTGTTGTCATAAACTGCAATGGGATGAT
GAGAGAAAACAAGAACCACAATCCCAAGTTATTGTACTCACAACCTACAAGCCTGTTATCAAGGA
GAACTCAAGACCGAAGGGTCCAAAAGGGCTTCCATTTACATCGTAGAGCATGTCGGGACCACCGA
CCGCCATAAATCTCGAGTTT
Found at i:236497 original size:238 final size:238
Alignment explanation
Indices: 236079--236787 Score: 1328
Period size: 238 Copynumber: 3.0 Consensus size: 238
236069 TTTCTTGCTT
236079 AAACATACATTCCTCTAATTAACTAAATTCATTTTTTTCTTATTATCGAGTCCTGCCTAAAAGGG
1 AAACATACATTCCTCTAATTAACTAAATTCATTTTTTTCTTATTATCGAGTCCTGCCTAAAAGGG
236144 TGTCTGGTATGAACTTATTGGGAGTACTTGTCGAAGCAAGCTATGGTGACAAACAACAAAAAAAG
66 TGTCTGGTATGAACTTATTGGGAGTACTTGTCGAAGCAAGCTATGGTGACAAACAACAAAAAAAG
236209 CAAAAGGCAAGAACACTAACAAATGTTTATGTAGTTTGGTGCAAACCTACGTCTATTGGTTTACT
131 CAAAAGGCAAGAACACTAACAAATGTTTATGTAGTTTGGTGCAAACCTACGTCTATTGGTTTACT
236274 GGGCCTTCACAAGAGATAAATCCATTCCTAAATCACAAGAGAC
196 GGGCCTTCACAAGAGATAAATCCATTCCTAAATCACAAGAGAC
236317 AAACATACATTCCTCTAATTAACTAAATTCATTTTTTTCTTATTATCGAGTCCTGCCTAAAAGGG
1 AAACATACATTCCTCTAATTAACTAAATTCATTTTTTTCTTATTATCGAGTCCTGCCTAAAAGGG
236382 TGTCTGGTATGAACTTATTGGGAGTACTTGTCGAAGCAAGCTATGGTGACAAACAACAAAAAAAG
66 TGTCTGGTATGAACTTATTGGGAGTACTTGTCGAAGCAAGCTATGGTGACAAACAACAAAAAAAG
236447 CAAAAGGCAAGAACACTAACAAATGTTTATGTAGTTTGGTGCAAACCTACGTCTATTGGTTTACT
131 CAAAAGGCAAGAACACTAACAAATGTTTATGTAGTTTGGTGCAAACCTACGTCTATTGGTTTACT
236512 GGGCCTTCACAAGAGATAAATCCATTCCTAAATCACAAGAGAC
196 GGGCCTTCACAAGAGATAAATCCATTCCTAAATCACAAGAGAC
236555 AAACATACATTCCTCTAATTAACTAAATTCATTTTTTTCTTATTATCGAGTCCTGCCTAAAAGGG
1 AAACATACATTCCTCTAATTAACTAAATTCATTTTTTTCTTATTATCGAGTCCTGCCTAAAAGGG
* *
236620 TGTCTGGTATGAACTTATTGGGAGTACTTGTCGAAGCAAGCTATGGTGACAAACAAAAAAAAAAA
66 TGTCTGGTATGAACTTATTGGGAGTACTTGTCGAAGCAAGCTATGGTGACAAACAACAAAAAAAG
* * * * *
236685 AAAAAGGGAAAGAACACTAACAAATTTTTATGTAGTTTGGTGTAAACCTACGTCTATTTGTTTAC
131 CAAAA-GGCAAGAACACTAACAAATGTTTATGTAGTTTGGTGCAAACCTACGTCTATTGGTTTAC
* *
236750 TTGGCCTTCACAAGAGATAAATCCATTGCTAAATCACA
195 TGGGCCTTCACAAGAGATAAATCCATTCCTAAATCACA
236788 GTACAAATAA
Statistics
Matches: 461, Mismatches: 9, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
238 370 0.80
239 91 0.20
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.30
Consensus pattern (238 bp):
AAACATACATTCCTCTAATTAACTAAATTCATTTTTTTCTTATTATCGAGTCCTGCCTAAAAGGG
TGTCTGGTATGAACTTATTGGGAGTACTTGTCGAAGCAAGCTATGGTGACAAACAACAAAAAAAG
CAAAAGGCAAGAACACTAACAAATGTTTATGTAGTTTGGTGCAAACCTACGTCTATTGGTTTACT
GGGCCTTCACAAGAGATAAATCCATTCCTAAATCACAAGAGAC
Found at i:237206 original size:12 final size:12
Alignment explanation
Indices: 237189--237216 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
237179 TTTATTTAAC
237189 TAAAATTCAAAA
1 TAAAATTCAAAA
237201 TAAAATTCAAAA
1 TAAAATTCAAAA
237213 TAAA
1 TAAA
237217 TAAATAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25
Consensus pattern (12 bp):
TAAAATTCAAAA
Found at i:238537 original size:22 final size:22
Alignment explanation
Indices: 238512--238555 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
238502 TAGTCATATA
238512 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
238534 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
238556 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:238615 original size:16 final size:17
Alignment explanation
Indices: 238579--238615 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
238569 AATTTTATTT
*
238579 TAATAATAAATTTTAAA
1 TAATAATAAATTCTAAA
238596 -AATAAT-AATTCTAAA
1 TAATAATAAATTCTAAA
238611 TAATA
1 TAATA
238616 TTATTCACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
TAATAATAAATTCTAAA
Found at i:238668 original size:15 final size:15
Alignment explanation
Indices: 238648--238705 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 15
238638 ATTCAATATT
238648 AATATTTTAATAATA
1 AATATTTTAATAATA
*
238663 AATATTTAGTACAATTATA
1 AATATTT--T--AATAATA
*
238682 AATATATTAATAATA
1 AATATTTTAATAATA
*
238697 AATGTTTTA
1 AATATTTTA
238706 TAGTATAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 20 0.59
17 2 0.06
19 12 0.35
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:240893 original size:6 final size:6
Alignment explanation
Indices: 240884--240909 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
240874 TTGTTGTTGT
240884 TGATGC TGATGC TGATGC TGATGC TG
1 TGATGC TGATGC TGATGC TGATGC TG
240910 CTGGTGGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.35, T:0.35
Consensus pattern (6 bp):
TGATGC
Found at i:241165 original size:6 final size:6
Alignment explanation
Indices: 241156--241181 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
241146 TTGTTGTTGT
241156 TGATGC TGATGC TGATGC TGATGC TG
1 TGATGC TGATGC TGATGC TGATGC TG
241182 CTGGTGGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.35, T:0.35
Consensus pattern (6 bp):
TGATGC
Found at i:241217 original size:272 final size:272
Alignment explanation
Indices: 240731--241273 Score: 1068
Period size: 272 Copynumber: 2.0 Consensus size: 272
240721 TCCTTCACCA
* *
240731 GTGCCTTGTAAATTAAGGTCTTTCTCTTCGTTATTTCCACCGCTGCTACTGTTGTTGTTGTTATC
1 GTGCCTTGTAAACTAAGGTCTTTCCCTTCGTTATTTCCACCGCTGCTACTGTTGTTGTTGTTATC
240796 GTCTCGATCCCGTTTCTTTAAACCACTGCTGCTTCCACTTTGCTCGTCTTCAGAATTTTGGTGAT
66 GTCTCGATCCCGTTTCTTTAAACCACTGCTGCTTCCACTTTGCTCGTCTTCAGAATTTTGGTGAT
240861 GAAATTGATGTTCTTGTTGTTGTTGATGCTGATGCTGATGCTGATGCTGCTGGTGGTGATGGTGA
131 GAAATTGATGTTCTTGTTGTTGTTGATGCTGATGCTGATGCTGATGCTGCTGGTGGTGATGGTGA
240926 AGATTGAAATCTCTAAAATTAAATGGAGGTGGAAGTGAAAGACCATGTGATGTAACTGGATCCAT
196 AGATTGAAATCTCTAAAATTAAATGGAGGTGGAAGTGAAAGACCATGTGATGTAACTGGATCCAT
240991 CGCTTGAATTTG
261 CGCTTGAATTTG
241003 GTGCCTTGTAAACTAAGGTCTTTCCCTTCGTTATTTCCACCGCTGCTACTGTTGTTGTTGTTATC
1 GTGCCTTGTAAACTAAGGTCTTTCCCTTCGTTATTTCCACCGCTGCTACTGTTGTTGTTGTTATC
241068 GTCTCGATCCCGTTTCTTTAAACCACTGCTGCTTCCACTTTGCTCGTCTTCAGAATTTTGGTGAT
66 GTCTCGATCCCGTTTCTTTAAACCACTGCTGCTTCCACTTTGCTCGTCTTCAGAATTTTGGTGAT
241133 GAAATTGATGTTCTTGTTGTTGTTGATGCTGATGCTGATGCTGATGCTGCTGGTGGTGATGGTGA
131 GAAATTGATGTTCTTGTTGTTGTTGATGCTGATGCTGATGCTGATGCTGCTGGTGGTGATGGTGA
241198 AGATTGAAATCTCTAAAATTAAATGGAGGTGGAAGTGAAAGACCATGTGATGTAACTGGATCCAT
196 AGATTGAAATCTCTAAAATTAAATGGAGGTGGAAGTGAAAGACCATGTGATGTAACTGGATCCAT
241263 CGCTTGAATTT
261 CGCTTGAATTT
241274 TGCACTCGTT
Statistics
Matches: 269, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
272 269 1.00
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.38
Consensus pattern (272 bp):
GTGCCTTGTAAACTAAGGTCTTTCCCTTCGTTATTTCCACCGCTGCTACTGTTGTTGTTGTTATC
GTCTCGATCCCGTTTCTTTAAACCACTGCTGCTTCCACTTTGCTCGTCTTCAGAATTTTGGTGAT
GAAATTGATGTTCTTGTTGTTGTTGATGCTGATGCTGATGCTGATGCTGCTGGTGGTGATGGTGA
AGATTGAAATCTCTAAAATTAAATGGAGGTGGAAGTGAAAGACCATGTGATGTAACTGGATCCAT
CGCTTGAATTTG
Found at i:246286 original size:92 final size:92
Alignment explanation
Indices: 246138--246322 Score: 361
Period size: 92 Copynumber: 2.0 Consensus size: 92
246128 TGTAGATGCC
*
246138 ATGGTTTATCCTTTTTTTCTCGTAGCTCTTACCAGTTGAACACCACTTAGCTTTCACATGTCAAC
1 ATGGTTTATCCTTTTTTTCTCGTAGCTCTTACCAGTTCAACACCACTTAGCTTTCACATGTCAAC
246203 AGAACTCAAACTAAAGATTAGATGTTT
66 AGAACTCAAACTAAAGATTAGATGTTT
246230 ATGGTTTATCCTTTTTTTCTCGTAGCTCTTACCAGTTCAACACCACTTAGCTTTCACATGTCAAC
1 ATGGTTTATCCTTTTTTTCTCGTAGCTCTTACCAGTTCAACACCACTTAGCTTTCACATGTCAAC
246295 AGAACTCAAACTAAAGATTAGATGTTT
66 AGAACTCAAACTAAAGATTAGATGTTT
246322 A
1 A
246323 ATAAAGGACA
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 92 1.00
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (92 bp):
ATGGTTTATCCTTTTTTTCTCGTAGCTCTTACCAGTTCAACACCACTTAGCTTTCACATGTCAAC
AGAACTCAAACTAAAGATTAGATGTTT
Found at i:247848 original size:21 final size:21
Alignment explanation
Indices: 247824--247863 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
247814 TTTTAATTTA
**
247824 AAAATCATTTAAATAATAAAT
1 AAAATCATGGAAATAATAAAT
*
247845 AAAATGATGGAAATAATAA
1 AAAATCATGGAAATAATAA
247864 TAATAAATAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (21 bp):
AAAATCATGGAAATAATAAAT
Found at i:253707 original size:21 final size:21
Alignment explanation
Indices: 253678--253719 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
253668 CAAACTCATC
253678 AAGCACATCATTG-GCCTCGT
1 AAGCACATCATTGAGCCTCGT
*
253698 AAGCAACATCTTTGAGCCTCGT
1 AAGC-ACATCATTGAGCCTCGT
253720 CAACCAACGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 8 0.42
22 7 0.37
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (21 bp):
AAGCACATCATTGAGCCTCGT
Found at i:254741 original size:20 final size:21
Alignment explanation
Indices: 254711--254765 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
254701 TTTTAATTTT
254711 TTAATTTTTTTAAAAT-TTAAA
1 TTAA-TTTTTTAAAATGTTAAA
* *
254732 TTAATTTTTTACAATGTTATA
1 TTAATTTTTTAAAATGTTAAA
254753 -TATATTTTTTAAA
1 TTA-ATTTTTTAAA
254766 TTTGTTTGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 12 0.41
21 17 0.59
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
TTAATTTTTTAAAATGTTAAA
Found at i:259970 original size:210 final size:209
Alignment explanation
Indices: 259606--260417 Score: 1164
Period size: 210 Copynumber: 3.9 Consensus size: 209
259596 TGGAAAGCTC
* * * * * * * *
259606 TCCAATTTGTTGCACCAGTT-AATTGACAGGTTTTGAAGGGAGGAAAATCCTTCCAAATCTGGAA
1 TCCAATTTGTCGCAACA-TTGAACTGACAGATATTGAAGAGAGGAAAATCCTTCCAAATTTGGGA
* * * * * *
259670 TTGAACTTAAATTAGAGCAAAACTC-TAGATCTAATTTTTTGAGACAACTGGAGGTAGATAATCC
65 TCGAACTTAAATTAG-G-ACAACCCATAAATCTAATTCTTTGAGACAAGTGGAGGTAGATAATCC
*
259734 ATCTCCAATCTTGCTTAATTTTTCACAACT-GAAAATGTGAAGCTTTTCAAGAGATGAACATCCT
128 ATCTCCAATCTTGCTTAATTTTTCACAACTAG-AAATGCGAAGCTTTTCAAGAGATGAACATCCT
259798 CCAGTTATTGGAAGAACT
192 CCAGTTATTGGAAGAACT
* *
259816 TCCAATTTGTCGCAACATTGAACTGACAGATATTGAAGAGAGAAAAATCCTTCCAAATTTGAGAT
1 TCCAATTTGTCGCAACATTGAACTGACAGATATTGAAGAGAGGAAAATCCTTCCAAATTTGGGAT
* *
259881 CGAACTTAAATTAGGACAACCCAATAAATCTAATTTTTTGAGACAAGTGGAAGTAGATAATCCAT
66 CGAACTTAAATTAGGACAACCC-ATAAATCTAATTCTTTGAGACAAGTGGAGGTAGATAATCCAT
* * * *
259946 CTCCAATCTTGCTTAATGTTTCACAACTGGAAATGCTAAGCTTTTCAAGAGATGAACATCCTCCG
130 CTCCAATCTTGCTTAATTTTTCACAACTAGAAATGCGAAGCTTTTCAAGAGATGAACATCCTCCA
*
260011 GTTATAGGAAGAACT
195 GTTATTGGAAGAACT
* * *
260026 TCCAATTTGTCACAGCCA-TCAACTGACAGATATTGAAGAGAGGAAAATCCTTCCAAATTTGGGA
1 TCCAATTTGTCGCA-ACATTGAACTGACAGATATTGAAGAGAGGAAAATCCTTCCAAATTTGGGA
*
260090 TCGAACTTAAATTAGGACATCCCCATAAATCTAATTCTTTGAGACAAGTGGAGGTAGATAATCCA
65 TCGAACTTAAATTAGGACA-ACCCATAAATCTAATTCTTTGAGACAAGTGGAGGTAGATAATCCA
*
260155 TCTCCAATCTTGTTTAATTTTTCACAACTAGAAATGCGAAGCTTTTCAAGAGATGAACATCCTCC
129 TCTCCAATCTTGCTTAATTTTTCACAACTAGAAATGCGAAGCTTTTCAAGAGATGAACATCCTCC
260220 AGTTATTGGAAGAACT
194 AGTTATTGGAAGAACT
* * *
260236 TCCAATTTGTTGCAACTTTGAACTGACAGATATTGAAGAGAGGAAATTCCTTCCAAATTTGGGAT
1 TCCAATTTGTCGCAACATTGAACTGACAGATATTGAAGAGAGGAAAATCCTTCCAAATTTGGGAT
**** * *
260301 CGAACTTAAATTAGGACAATAGTTTAAATGTAATTCTTTGAGACAAGTGGAGGTAGATAATCCAG
66 CGAACTTAAATTAGGACAA-CCCATAAATCTAATTCTTTGAGACAAGTGGAGGTAGATAATCCAT
* *
260366 CTCCAATCTTGTTTAATTTTTCACAACTAGGAATGCGAAGCTTTTCAAGAGA
130 CTCCAATCTTGCTTAATTTTTCACAACTAGAAATGCGAAGCTTTTCAAGAGA
260418 ATAACATTGT
Statistics
Matches: 545, Mismatches: 49, Indels: 16
0.89 0.08 0.03
Matches are distributed among these distances:
208 5 0.01
209 4 0.01
210 530 0.97
211 6 0.01
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (209 bp):
TCCAATTTGTCGCAACATTGAACTGACAGATATTGAAGAGAGGAAAATCCTTCCAAATTTGGGAT
CGAACTTAAATTAGGACAACCCATAAATCTAATTCTTTGAGACAAGTGGAGGTAGATAATCCATC
TCCAATCTTGCTTAATTTTTCACAACTAGAAATGCGAAGCTTTTCAAGAGATGAACATCCTCCAG
TTATTGGAAGAACT
Found at i:263586 original size:6 final size:6
Alignment explanation
Indices: 263567--263604 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
263557 TCTAGAACAG
*
263567 TCTTATT TCCTTT TCTTTT TCTTTT TCTTTT T-TTTT TC
1 TCTT-TT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TC
263605 AAAACAGCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
5 5 0.18
6 20 0.71
7 3 0.11
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (6 bp):
TCTTTT
Found at i:267675 original size:16 final size:16
Alignment explanation
Indices: 267609--267675 Score: 89
Period size: 16 Copynumber: 4.2 Consensus size: 16
267599 TGAATTATTT
* *
267609 ATTACAGGTCTATTCT
1 ATTACAGCTCTATTCC
*
267625 ATTATAGCTCTATTCC
1 ATTACAGCTCTATTCC
* *
267641 ATTACAACTCTATTAC
1 ATTACAGCTCTATTCC
267657 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
267673 ATT
1 ATT
267676 CCTTCCAACC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.28, C:0.24, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:270929 original size:14 final size:15
Alignment explanation
Indices: 270910--270939 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
270900 TTAAATTAGG
270910 ACAATTCTTT-AGAC
1 ACAATTCTTTGAGAC
270924 ACAATTCTTTGAGAC
1 ACAATTCTTTGAGAC
270939 A
1 A
270940 AGTGGAGGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (15 bp):
ACAATTCTTTGAGAC
Found at i:271205 original size:210 final size:209
Alignment explanation
Indices: 270857--271438 Score: 767
Period size: 210 Copynumber: 2.8 Consensus size: 209
270847 ATCAACTGAT
* * *
270857 AGATTTTGAAGAGATGAAAATCCTTCCAAATTTGGGATCGAACTTAAATTAGGACAATTCTTTAG
1 AGATTTTGAAGAGAGGAAAATCCTTCCAAATTTGGGATCGAACTTAAATAAGGACAA-TCTTAAG
* *
270922 A-CACAATTCTTTGAGACAAGTGGAGGTAGATAATCCGTCTCCGATCTTGCTTAACTTTTCACAT
65 ATC-TAATTCTTTGAGACAAGTGGAGGTAGATAATCCGTCTCCGATCTTGCTTAACTTTTCACAA
* * *
270986 GATGAAATGCTAAGATTTTCAAGAAAAGAACATCCTCCGGTTATTGGAAGTACTTCCAATTCGTT
129 CAGGAAATGCTAAGATTTTCAAGAAAAGAACATCCTCCGGTTATTGGAAGTACTTCCAATTCGTA
* *
271051 GCACCATT-TAATTGAC
194 GCAAC-TTAGAATTGAC
* *
271067 AGATTTTGAAGAGAGGAAAATCCTTCCAAATTAGGAATCGAACTTAAATAAGGACAATCTTCAAG
1 AGATTTTGAAGAGAGGAAAATCCTTCCAAATTTGGGATCGAACTTAAATAAGGACAATCTT-AAG
* * * * *
271132 ATCTAATTCTTTGAGACAAGTGGAGGTTGATAATCCATCTCCAATCTTGCTTAATTTTTCGCAAC
65 ATCTAATTCTTTGAGACAAGTGGAGGTAGATAATCCGTCTCCGATCTTGCTTAACTTTTCACAAC
* * * * *
271197 CGGAAATGCTAAGCTTTTCAAGAGATGAACATCGTCCGGTTATTGGAAGTACTTCCAATTCGTAG
130 AGGAAATGCTAAGATTTTCAAGAAAAGAACATCCTCCGGTTATTGGAAGTACTTCCAATTCGTAG
271262 CAACTTAGAATTGAC
195 CAACTTAGAATTGAC
* * * *
271277 AGATATTGAAGAGAGGAAAATCCTTCCAAATTTGGGATCGAACTTAAATTAA-AACACTCATATA
1 AGATTTTGAAGAGAGGAAAATCCTTCCAAATTTGGGATCGAACTTAAA-TAAGGACAATCTTA-A
*
271341 GATATAATTCTTTGAGACAAGTGGAGGTAGATAATCCGTCTCCGATCTTGCTTAAAC-TTTCACA
64 GATCTAATTCTTTGAGACAAGTGGAGGTAGATAATCCGTCTCCGATCTTGCTT-AACTTTTCACA
** * * * * *
271405 TGATGAAATGCGAAGCTTTTCAAGAGAATAACAT
128 ACAGGAAATGCTAAGATTTTCAAGAAAAGAACAT
271439 TGTCCCGTTA
Statistics
Matches: 325, Mismatches: 41, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
209 7 0.02
210 312 0.96
211 6 0.02
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (209 bp):
AGATTTTGAAGAGAGGAAAATCCTTCCAAATTTGGGATCGAACTTAAATAAGGACAATCTTAAGA
TCTAATTCTTTGAGACAAGTGGAGGTAGATAATCCGTCTCCGATCTTGCTTAACTTTTCACAACA
GGAAATGCTAAGATTTTCAAGAAAAGAACATCCTCCGGTTATTGGAAGTACTTCCAATTCGTAGC
AACTTAGAATTGAC
Found at i:277223 original size:17 final size:17
Alignment explanation
Indices: 277203--277236 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
277193 AAATAGATTT
277203 TTAATTAAAAATTTTAA
1 TTAATTAAAAATTTTAA
*
277220 TTAATTAAAATTTTTAA
1 TTAATTAAAAATTTTAA
277237 ACTTAAACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAATTAAAAATTTTAA
Found at i:277919 original size:17 final size:17
Alignment explanation
Indices: 277899--277932 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
277889 ATGTTTAGGT
277899 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
*
277916 TTAAAATTTTTAATTAA
1 TTAAAAATTTTAATTAA
277933 AAATCTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:278287 original size:16 final size:15
Alignment explanation
Indices: 278268--278321 Score: 63
Period size: 15 Copynumber: 3.3 Consensus size: 15
278258 ATATGTAATT
278268 ATTAATTAATTTAAAA
1 ATTAATTAATTT-AAA
278284 ATTAATTAAAGATTTAAA
1 ATTAATT--A-ATTTAAA
*
278302 ATAAATTAATTTAAA
1 ATTAATTAATTTAAA
278317 ATTAA
1 ATTAA
278322 AAAGCTTCAC
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
15 11 0.33
16 8 0.24
18 10 0.30
19 4 0.12
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (15 bp):
ATTAATTAATTTAAA
Found at i:278324 original size:22 final size:22
Alignment explanation
Indices: 278282--278324 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
278272 ATTAATTTAA
*
278282 AAATTAATTAAAGATTTAAAAT
1 AAATTAATTAAAGATTAAAAAT
278304 AAATTAATTTAAA-ATTAAAAA
1 AAATTAA-TTAAAGATTAAAAA
278325 GCTTCACTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (22 bp):
AAATTAATTAAAGATTAAAAAT
Found at i:280315 original size:47 final size:47
Alignment explanation
Indices: 280206--280316 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
280196 CCGGGATAAG
*
280206 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
280253 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
280300 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
280317 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:281088 original size:4 final size:4
Alignment explanation
Indices: 281079--281113 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
281069 CCCTTTTCTA
*
281079 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TCTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
281114 TTTTTTTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTC
Found at i:283619 original size:24 final size:24
Alignment explanation
Indices: 283574--283626 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
283564 TTGTCTTTTT
283574 CTTTTATTCTTTTTCTTATTTTAA
1 CTTTTATTCTTTTTCTTATTTTAA
*
283598 GTTTTATT-TTTTT-TTAACTTTTAA
1 CTTTTATTCTTTTTCTT-A-TTTTAA
283622 CTTTT
1 CTTTT
283627 TCTCAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
22 2 0.08
23 6 0.24
24 17 0.68
ACGTcount: A:0.17, C:0.09, G:0.02, T:0.72
Consensus pattern (24 bp):
CTTTTATTCTTTTTCTTATTTTAA
Found at i:283706 original size:50 final size:54
Alignment explanation
Indices: 283644--283825 Score: 153
Period size: 57 Copynumber: 3.3 Consensus size: 54
283634 TTTAAAAAAC
*
283644 TTTAAATGTATA-TTTTA-AAT-TT-GTTTATTTATTTATTATTAATTTTAAAT
1 TTTAAATATATATTTTTATAATCTTAGTTTATTTATTTATTATTAATTTTAAAT
* *
283694 TTTAAATATATATTTTTTATTTATCCTTATTTTATTTATTTATTATTAATTTTAAAT
1 TTTAAATATATA-TTTTTA-TAAT-CTTAGTTTATTTATTTATTATTAATTTTAAAT
* * * * *
283751 TTTAAAATTTAAATGTTGTCT-TTATCCTTA-TTTATTTTATTTATTTTTTATTCTT-AAT
1 TTT-AAATATATAT-TT-T-TATAAT-CTTAGTTTA-TTTATTTATTATTAATT-TTAAAT
283809 TTTAAATATATATTTTT
1 TTTAAATATATATTTTT
283826 GAAATTATTT
Statistics
Matches: 110, Mismatches: 9, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
50 11 0.10
52 5 0.05
54 3 0.03
55 1 0.01
56 4 0.04
57 43 0.39
58 39 0.35
59 3 0.03
60 1 0.01
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (54 bp):
TTTAAATATATATTTTTATAATCTTAGTTTATTTATTTATTATTAATTTTAAAT
Found at i:283785 original size:57 final size:58
Alignment explanation
Indices: 283667--283820 Score: 197
Period size: 58 Copynumber: 2.7 Consensus size: 58
283657 TTTAAATTTG
* * *
283667 TTTATTTATTTATTATTAATTTTAAATTTT-AAATATATATTTTTTATTTATCCTTAT
1 TTTATTTATTTATTATTAATTTTAAATTTTAAAATATAAATGTTGTATTTATCCTTAT
* *
283724 TTTATTTATTTATTATTAATTTTAAATTTTAAAATTTAAATGTTGTCTTTATCCTTA-
1 TTTATTTATTTATTATTAATTTTAAATTTTAAAATATAAATGTTGTATTTATCCTTAT
* *
283781 TTTATTTTATTTATTTTTTATTCTT-AATTTTAAATATATA
1 TTTA-TTTATTTATTATTAATT-TTAAATTTTAAA-ATATA
283821 TTTTTGAAAT
Statistics
Matches: 85, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
57 34 0.40
58 45 0.53
59 6 0.07
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (58 bp):
TTTATTTATTTATTATTAATTTTAAATTTTAAAATATAAATGTTGTATTTATCCTTAT
Found at i:283975 original size:20 final size:19
Alignment explanation
Indices: 283950--284005 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 19
283940 TTTATAATAT
283950 TTTAAATGTATATTTTAAAA
1 TTTAAAT-TATATTTTAAAA
*
283970 TTTAAAATT-TATTTTTTAAA
1 TTT-AAATTATA-TTTTAAAA
283990 TATTAAA-TATATTTTA
1 T-TTAAATTATATTTTA
284006 TTTATTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
19 7 0.23
20 17 0.57
21 6 0.20
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
TTTAAATTATATTTTAAAA
Found at i:283977 original size:21 final size:22
Alignment explanation
Indices: 283939--283993 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
283929 TTATTATTAG
*
283939 TTTTATAATATTTTAAATGTATA
1 TTTTA-AATATTTAAAATGTATA
* *
283962 TTTTAAA-ATTTAAAATTTATT
1 TTTTAAATATTTAAAATGTATA
283983 TTTTAAATATT
1 TTTTAAATATT
283994 AAATATATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 18 0.64
22 5 0.18
23 5 0.18
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
TTTTAAATATTTAAAATGTATA
Found at i:283995 original size:21 final size:21
Alignment explanation
Indices: 283939--284004 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
283929 TTATTATTAG
* *
283939 TTTTATAATATTTTAAATGTATA
1 TTTTA-AATA-TTTAAATATATT
*
283962 TTTTAAA-ATTTAAAATTTATT
1 TTTTAAATATTT-AAATATATT
283983 TTTTAAATA-TTAAATATATT
1 TTTTAAATATTTAAATATATT
284003 TT
1 TT
284005 ATTTATTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
20 13 0.34
21 17 0.45
22 3 0.08
23 5 0.13
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTTAAATATTTAAATATATT
Found at i:284343 original size:17 final size:18
Alignment explanation
Indices: 284323--284357 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
284313 TAAAGTTTTT
*
284323 TTAAAA-TTAAGAAAAAG
1 TTAAAAGTTAAAAAAAAG
284340 TTAAAAGTTAAAAAAAAG
1 TTAAAAGTTAAAAAAAAG
284358 AAAAAGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.23
Consensus pattern (18 bp):
TTAAAAGTTAAAAAAAAG
Found at i:284375 original size:24 final size:25
Alignment explanation
Indices: 284331--284381 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
284321 TTTTAAAATT
* *
284331 AAGAAAAAGTTAAAAGTTAAAA-AA
1 AAGAAAAAGTAAAAAGATAAAAGAA
284355 AAGAAAAAG-AAAAAGAATAAAAGAA
1 AAGAAAAAGTAAAAAG-ATAAAAGAA
284380 AA
1 AA
284382 AGACAAAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 5 0.22
24 14 0.61
25 4 0.17
ACGTcount: A:0.76, C:0.00, G:0.14, T:0.10
Consensus pattern (25 bp):
AAGAAAAAGTAAAAAGATAAAAGAA
Found at i:285710 original size:144 final size:144
Alignment explanation
Indices: 285477--285888 Score: 513
Period size: 144 Copynumber: 2.9 Consensus size: 144
285467 TACACAGCCT
** ** * * *
285477 CCTTAGAGAAGAGAGATTTCTGAATGACTGTGGCAAGGCTTCTATTCCTTGAAACTCTTCTATCG
1 CCTTAGAGAAGAGAGATTTCCCAACCACTCTGGCAAGGCTTCTATTCCATGAAACCCTTCTATCG
* * * * *
285542 TTAAATATTCAAGGGTAGAAAGGAGTTGAAGTTGGTGAGTAAAACTCTTTAGC-TTCCGAAAACC
66 TCAAATCTTCAAGGGTAGTAAGGAGTTGAAGTTGGTGAGGAAGACTCTTTAGCTTTCC-AAAACC
*
285606 ACTCAAATATAGATG
130 ACTCAAATATAGACG
* * ** *
285621 CCTTAGAGAAGAGAGATTTCCCAACCATTCTGGCAAGGCTTCTATTTCATGAAACCCCAGC-ATA
1 CCTTAGAGAAGAGAGATTTCCCAACCACTCTGGCAAGGCTTCTATTCCATGAAA-CCCTTCTATC
* * * *
285685 GTCAAATCTTCAAGGGCAGTGAGGAGTTGCAGCTGGTGAGGAAGACTCTTTAGCTTTCCAAAACC
65 GTCAAATCTTCAAGGGTAGTAAGGAGTTGAAGTTGGTGAGGAAGACTCTTTAGCTTTCCAAAACC
285750 ACTCAAATATAGACG
130 ACTCAAATATAGACG
* ** *
285765 CCTTAGAGAAGAGAGATTTCCCAACCAGTCTGGCAAGGCTTCTATTCCACCAAACCTTTCTATCG
1 CCTTAGAGAAGAGAGATTTCCCAACCACTCTGGCAAGGCTTCTATTCCATGAAACCCTTCTATCG
* * * *
285830 TCAAATCTTCAAGGGTGGTTAGGAGTTGAAATTGGTGAGGGAGACTCTTTAGCGTTTCC
66 TCAAATCTTCAAGGGTAGTAAGGAGTTGAAGTTGGTGAGGAAGACTCTTTAGC-TTTCC
285889 CAACCAATCA
Statistics
Matches: 227, Mismatches: 37, Indels: 7
0.84 0.14 0.03
Matches are distributed among these distances:
143 3 0.01
144 212 0.93
145 12 0.05
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (144 bp):
CCTTAGAGAAGAGAGATTTCCCAACCACTCTGGCAAGGCTTCTATTCCATGAAACCCTTCTATCG
TCAAATCTTCAAGGGTAGTAAGGAGTTGAAGTTGGTGAGGAAGACTCTTTAGCTTTCCAAAACCA
CTCAAATATAGACG
Found at i:286644 original size:210 final size:207
Alignment explanation
Indices: 286281--287483 Score: 1276
Period size: 210 Copynumber: 5.7 Consensus size: 207
286271 CAACGGATAC
* * * * **
286281 ATTTTGAAGAGACGAAAATCCTTCCAAATTTGGAATCGAACTTAAATTAGGACAACATTTTAGAT
1 ATTTTGAAGAGAGGAAAATCCTTTC-AATTTGGAATGGAACTTAAATTAGGACAATA-CATAG-T
* * * * ** * *
286346 C-TAATTCTTTAAGAAAAGTGGAGGTAGATAATCCGTCTCCAATCTTACTTAACTTTTT-GCAAT
63 CGTAATTCTTTGAGACAAGTGGAGGTTGACAGCCCGTCTCCAATCTTGCTTAA-TTTTTCGCAAC
* * * * *
286409 CGAAAATGCTAAG-TTTTATAAGAGATGAACATCCTCCGGTAATCGGAAGAACTTCCAATTCGCT
127 CGGAAATGCTAAGCTTTT-CAAGAGATGAACATCCTCCGGTTATCGGAAGAACTCCCAATTC-TT
286473 GCACCATCT-AATTGACAG
190 GCACC-TCTCAATTGACAG
* * ** * * *
286491 ATTTTGAAGAGACGAAAATCCTTTCAATTCCGGAATTAAAATCAAGTTAGGACAATTACATAGTC
1 ATTTTGAAGAGAGGAAAATCCTTTCAATT-TGGAATGGAACTTAAATTAGGACAA-TACATAGTC
* * *
286556 GTAATTTTTTGAGACAAGTAGAGGTTGACAGCCCGTCTCCAATCTTGCTTAATTTTTCGCAAAC-
64 GTAATTCTTTGAGACAAGTGGAGGTTGACAGCCCGTCTCCAATCTTGCTTAATTTTTCGCAACCG
* * * * *
286620 GATAATGCTAAGCTCTTCAAGAGATGAACATTCTCCCGTTATCGGAAGAACTTCCAATTTTTTGC
129 GA-AATGCTAAGCTTTTCAAGAGATGAACATCCTCCGGTTATCGGAAGAACTCCCAA-TTCTTGC
286685 ACCTCTCAATTGACAG
192 ACCTCTCAATTGACAG
* * * **
286701 ATTTTGAAGAGAGGAAAATCTTTTCAAGTTAGGAATAGAACTTAAATTAGGACAATATTTTAGAT
1 ATTTTGAAGAGAGGAAAATCCTTTCAA-TTTGGAATGGAACTTAAATTAGGACAATA-CATAG-T
* * ** *
286766 C-TAATT-TTCTGAGACAAGTGGAGGTAGATAATCCATCTCCAATCTTGCTTAATTTTTCGCAAC
63 CGTAATTCTT-TGAGACAAGTGGAGGTTGACAGCCCGTCTCCAATCTTGCTTAATTTTTCGCAAC
* * * *
286829 CAGAAAT-CTTAAGCTTTTGAAGAGATGAACATCCTCCGGTTATTGGAAGAACTCCCAATTTTTT
127 CGGAAATGC-TAAGCTTTTCAAGAGATGAACATCCTCCGGTTATCGGAAGAACTCCCAA-TTCTT
*
286893 GCAGCTCTCAATTGACAG
190 GCACCTCTCAATTGACAG
* * * * * *
286911 ATATTGAAGAGAGGAAAAGCCTTCCAAATTTGGAATGGAACTTACATTAGGACAATCCGATAGAC
1 ATTTTGAAGAGAGGAAAATCCTTTC-AATTTGGAATGGAACTTAAATTAGGACAATAC-ATAG-T
*
286976 CG-AATTCTTTGAGACAAGTGGAGGTTGACAGCCCGTATCCAATCTTGCTTAATTTTTCGCAACC
63 CGTAATTCTTTGAGACAAGTGGAGGTTGACAGCCCGTCTCCAATCTTGCTTAATTTTTCGCAACC
* * * *
287040 GGAAATCCTAAGCTTTTCAAGGGATGAACATCCTCCGATTATCGGAAGAACTCCCAAATCCTTGC
128 GGAAATGCTAAGCTTTTCAAGAGATGAACATCCTCCGGTTATCGGAAGAACTCCC-AATTCTTGC
* *
287105 ACCTGTAAATTGACAG
192 ACCTCTCAATTGACAG
* * * * *
287121 ATTTTGAAGAGACGATAATCCTTCCAAATTTGGAATGGAACTTAAATTAGGACAATCAAATAGAC
1 ATTTTGAAGAGAGGAAAATCCTTTC-AATTTGGAATGGAACTTAAATTAGGACAAT-ACATAGTC
* *
287186 CTAATTCTTTGAGACAAGTGGAGGTTGACAGCCCGTCTCCGATCTTGCTTAATTTTTCGCAACCG
64 GTAATTCTTTGAGACAAGTGGAGGTTGACAGCCCGTCTCCAATCTTGCTTAATTTTTCGCAACCG
* * * *
287251 GATATTCTAAGCTTTTCAAGAGATGAACATCCTCCGATAATCGGAAGAACTCCCAATTTCTTGCA
129 GAAATGCTAAGCTTTTCAAGAGATGAACATCCTCCGGTTATCGGAAGAACTCCCAA-TTCTTGCA
** *
287316 GTTCTCAATTGACAA
193 CCTCTCAATTGACAG
* * *
287331 ATTTTGAAGAGAGGAAAATCCTTCTAAATTTGGAATCGAACTTAAATTAGGACAA-GCATGTAGG
1 ATTTTGAAGAGAGGAAAATCCTT-TCAATTTGGAATGGAACTTAAATTAGGACAATACA--TA-G
* * ** * * * *
287395 T-GTAATTCTTTGAGACAAGTGGAGGTAGATAATCCGTTTCCAATCTTACTTAATTTTTCACAAA
62 TCGTAATTCTTTGAGACAAGTGGAGGTTGACAGCCCGTCTCCAATCTTGCTTAATTTTTCGCAAC
**
287459 ATGAAATGCTAAGCTTTTCAAGAGA
127 CGGAAATGCTAAGCTTTTCAAGAGA
287484 AGAGCATTGT
Statistics
Matches: 844, Mismatches: 122, Indels: 54
0.83 0.12 0.05
Matches are distributed among these distances:
208 1 0.00
209 23 0.03
210 800 0.95
211 20 0.02
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30
Consensus pattern (207 bp):
ATTTTGAAGAGAGGAAAATCCTTTCAATTTGGAATGGAACTTAAATTAGGACAATACATAGTCGT
AATTCTTTGAGACAAGTGGAGGTTGACAGCCCGTCTCCAATCTTGCTTAATTTTTCGCAACCGGA
AATGCTAAGCTTTTCAAGAGATGAACATCCTCCGGTTATCGGAAGAACTCCCAATTCTTGCACCT
CTCAATTGACAG
Done.