Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 11 of 167
Found at i:3585652 original size:12 final size:12
Alignment explanation
Indices: 3585635--3585714 Score: 58
Period size: 12 Copynumber: 6.4 Consensus size: 12
3585625 TAAAATATAT
3585635 AAATATTAATAA
1 AAATATTAATAA
**
3585647 AAATATTTTTAA
1 AAATATTAATAA
3585659 AAATA--AATAA
1 AAATATTAATAA
*
3585669 ACAGTGATATAATATA
1 A-AAT-AT-TAATA-A
3585685 TAAATATTAATAA
1 -AAATATTAATAA
3585698 AAATATTTAA-AA
1 AAATA-TTAATAA
3585710 AAATA
1 AAATA
3585715 AATAAATAGT
Statistics
Matches: 54, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
10 4 0.07
11 2 0.04
12 28 0.52
13 5 0.09
14 5 0.09
15 6 0.11
16 3 0.06
17 1 0.02
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (12 bp):
AAATATTAATAA
Found at i:3585687 original size:51 final size:51
Alignment explanation
Indices: 3585628--3585729 Score: 177
Period size: 51 Copynumber: 2.0 Consensus size: 51
3585618 TTAATTCTAA
**
3585628 AATATATAAATATTAATAAAAATATTTTTAAAAATAAATAAACAGTGATAT
1 AATATATAAATATTAATAAAAATATTTAAAAAAATAAATAAACAGTGATAT
*
3585679 AATATATAAATATTAATAAAAATATTTAAAAAAATAAATAAATAGTGATAT
1 AATATATAAATATTAATAAAAATATTTAAAAAAATAAATAAACAGTGATAT
3585730 TTTTTTTACT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (51 bp):
AATATATAAATATTAATAAAAATATTTAAAAAAATAAATAAACAGTGATAT
Found at i:3585853 original size:65 final size:65
Alignment explanation
Indices: 3585753--3585883 Score: 219
Period size: 65 Copynumber: 2.0 Consensus size: 65
3585743 CCTATTAAAA
3585753 TATTGTGTTGATAACATGAATATATTGTCATTTTTAGTATTGTAAACAACACATCCTCAATATTG
1 TATTGTGTTGATAACATGAATATATTGTCATTTTTAGTATTGTAAACAACACATCCTCAATATTG
* * *
3585818 TATTGTGTTGATAACATGAATGTATTGTC-TATTTTAGTATTGTGAACAACACATCCTCAATCTT
1 TATTGTGTTGATAACATGAATATATTGTCAT-TTTTAGTATTGTAAACAACACATCCTCAATATT
3585882 G
65 G
3585883 T
1 T
3585884 TCATAGCTTC
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
64 1 0.02
65 61 0.98
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.42
Consensus pattern (65 bp):
TATTGTGTTGATAACATGAATATATTGTCATTTTTAGTATTGTAAACAACACATCCTCAATATTG
Found at i:3592975 original size:81 final size:81
Alignment explanation
Indices: 3592835--3593000 Score: 314
Period size: 81 Copynumber: 2.0 Consensus size: 81
3592825 TTTAGATTTC
*
3592835 TGGTTTTTTGTGTACTATTAAACTTAGTATACTCAGTTTCTACATAAACTGGAAGTTCACATTAA
1 TGGTCTTTTGTGTACTATTAAACTTAGTATACTCAGTTTCTACATAAACTGGAAGTTCACATTAA
3592900 AATGGCAAAGATTACA
66 AATGGCAAAGATTACA
*
3592916 TGGTCTTTTGTGTACTATTAAACTTAGTATACTCAGTTTCTACATAGACTGGAAGTTCACATTAA
1 TGGTCTTTTGTGTACTATTAAACTTAGTATACTCAGTTTCTACATAAACTGGAAGTTCACATTAA
3592981 AATGGCAAAGATTACA
66 AATGGCAAAGATTACA
3592997 TGGT
1 TGGT
3593001 TTCAGTTTCT
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
81 83 1.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (81 bp):
TGGTCTTTTGTGTACTATTAAACTTAGTATACTCAGTTTCTACATAAACTGGAAGTTCACATTAA
AATGGCAAAGATTACA
Found at i:3596191 original size:15 final size:16
Alignment explanation
Indices: 3596171--3596205 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
3596161 CGGTCCTCTA
*
3596171 ATTTTGGGTTT-AATT
1 ATTTTGAGTTTGAATT
3596186 ATTTTGAGTTTGAATT
1 ATTTTGAGTTTGAATT
3596202 ATTT
1 ATTT
3596206 AGATTTTGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.23, C:0.00, G:0.17, T:0.60
Consensus pattern (16 bp):
ATTTTGAGTTTGAATT
Found at i:3600199 original size:72 final size:67
Alignment explanation
Indices: 3600115--3600453 Score: 224
Period size: 61 Copynumber: 5.2 Consensus size: 67
3600105 TTTAAAAAGC
*
3600115 ATTTAAAATTTTAGATCAATTTATAATTCATGTATCATTAAATTAAATTATTTAAATATTATTTA
1 ATTTAAAATTTTA-A--AA-TTAT-ATTCATGTATAATTAAATTAAATTATTTAAATATTATTTA
3600180 TTATTAT
61 TTATTAT
* *
3600187 ATTTAAAATTTTAAAA-TAT-TTCATGTGTAATTAAATTTACAA--A--T-AAT-TTATTAATTA
1 ATTTAAAATTTTAAAATTATATTCATGTATAATTAAA-TTA-AATTATTTAAATATTATTTATTA
3600244 TTA-
64 TTAT
* * *
3600247 A---AAAATTATTCCAAATGTATATTTTATGTATAATTATATTAAATTATTTAAATATTATTTAT
1 ATTTAAAATT-TT-AAAAT-TATA-TTCATGTATAATTAAATTAAATTATTTAAATATTATTTAT
3600309 TATTAT
62 TATTAT
* *
3600315 ATTTAAAATTTTAAAA-TAT-TTCATGTGTAATTAAATTTACAA--A--T-AAT-TTATTAATTA
1 ATTTAAAATTTTAAAATTATATTCATGTATAATTAAA-TTA-AATTATTTAAATATTATTTATTA
3600372 TTA-
64 TTAT
* * * *
3600375 A---AAAATTATTCCAAATGTATATTTTATGTATAATTATATTAAATTATTTAAATATTATCTA-
1 ATTTAAAATT-TT-AAAAT-TATA-TTCATGTATAATTAAATTAAATTATTTAAATATTATTTAT
*
3600436 AATTAT
62 TATTAT
*
3600442 TTTTAAAATTTT
1 ATTTAAAATTTT
3600454 TAATATCACC
Statistics
Matches: 210, Mismatches: 21, Indels: 75
0.69 0.07 0.25
Matches are distributed among these distances:
57 12 0.06
58 4 0.02
59 6 0.03
60 2 0.01
61 34 0.16
62 12 0.06
63 30 0.14
65 31 0.15
66 16 0.08
67 27 0.13
68 1 0.00
69 7 0.03
70 8 0.04
71 7 0.03
72 13 0.06
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.50
Consensus pattern (67 bp):
ATTTAAAATTTTAAAATTATATTCATGTATAATTAAATTAAATTATTTAAATATTATTTATTATT
AT
Found at i:3600200 original size:31 final size:31
Alignment explanation
Indices: 3600165--3600334 Score: 81
Period size: 32 Copynumber: 5.3 Consensus size: 31
3600155 AATTAAATTA
3600165 TTTAAATATTATTTATTATTATATTTAAAAT
1 TTTAAATATTATTTATTATTATATTTAAAAT
*
3600196 TTTAAA-A-TATTTCATGT-GTA-A-TT-AAAT
1 TTTAAATATTATTT-AT-TATTATATTTAAAAT
* *
3600223 TTACAAATAATTTATTAATTATTA-A---AAAAT
1 TT-TAAAT-A-TTATTTATTATTATATTTAAAAT
* * *
3600253 TATTCCAAATGTATATTTTATGTATAATTATATTAAATT
1 T-TT--AAATAT-TA-TTTAT-TATTA-TAT-TTAAAAT
3600292 ATTTAAATATTATTTATTATTATATTTAAAAT
1 -TTTAAATATTATTTATTATTATATTTAAAAT
3600324 TTTAAAATATT
1 TTT-AAATATT
3600335 TCATGTGTAA
Statistics
Matches: 104, Mismatches: 12, Indels: 45
0.65 0.07 0.28
Matches are distributed among these distances:
27 6 0.06
28 5 0.05
29 6 0.06
30 13 0.12
31 18 0.17
32 25 0.24
33 7 0.07
34 4 0.04
35 6 0.06
36 2 0.02
37 5 0.05
39 6 0.06
40 1 0.01
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (31 bp):
TTTAAATATTATTTATTATTATATTTAAAAT
Found at i:3600219 original size:60 final size:60
Alignment explanation
Indices: 3600155--3600351 Score: 204
Period size: 60 Copynumber: 3.1 Consensus size: 60
3600145 TGTATCATTA
3600155 AATTAAATTATTTAAATATTATTTATTATTATATTTAAAATTTTAAAATATTTCATGTGT
1 AATTAAATTATTTAAATATTATTTATTATTATATTTAAAATTTTAAAATATTTCATGTGT
** ** *
3600215 AATTAAATT-TACAAATA--ATTTATTAATTAT-TAAAAAATTATTCCAAATGTATATTTTATGT
1 AATTAAATTATTTAAATATTATTTATT-ATTATATTTAAAATT-TT--AAA---ATATTTCATG-
*
3600276 ATAATT
58 -T--GT
3600282 ATATTAAATTATTTAAATATTATTTATTATTATATTTAAAATTTTAAAATATTTCATGTGT
1 A-ATTAAATTATTTAAATATTATTTATTATTATATTTAAAATTTTAAAATATTTCATGTGT
3600343 AATTAAATT
1 AATTAAATT
3600352 TACAAATAAT
Statistics
Matches: 109, Mismatches: 12, Indels: 32
0.71 0.08 0.21
Matches are distributed among these distances:
57 14 0.13
58 7 0.06
59 6 0.06
60 20 0.18
61 2 0.02
63 10 0.09
65 10 0.09
67 2 0.02
68 11 0.10
69 6 0.06
70 7 0.06
71 14 0.13
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (60 bp):
AATTAAATTATTTAAATATTATTTATTATTATATTTAAAATTTTAAAATATTTCATGTGT
Found at i:3600239 original size:57 final size:58
Alignment explanation
Indices: 3600175--3600372 Score: 195
Period size: 57 Copynumber: 3.2 Consensus size: 58
3600165 TTTAAATATT
3600175 ATTTATT-ATTATATTTAAAATTTTAAAATATTTCATGTGTAATTAAATTTACAAATA
1 ATTTATTAATTATATTTAAAATTTTAAAATATTTCATGTGTAATTAAATTTACAAATA
** * * **
3600232 ATTTATTAATTAT-TAAAAAATTATTCCAAATGTATATTTTATGTATAATTATATTAAATTATTT
1 ATTTATTAATTATATTTAAAATT-TT--AAA---ATATTTCATG--T--GTA-ATTAAATT-TAC
3600296 AAATA
54 AAATA
3600301 TTATTTATT-ATTATATTTAAAATTTTAAAATATTTCATGTGTAATTAAATTTACAAATA
1 --ATTTATTAATTATATTTAAAATTTTAAAATATTTCATGTGTAATTAAATTTACAAATA
3600360 ATTTATTAATTAT
1 ATTTATTAATTAT
3600373 TAAAAAATTA
Statistics
Matches: 112, Mismatches: 12, Indels: 33
0.71 0.08 0.21
Matches are distributed among these distances:
57 21 0.19
58 12 0.11
59 6 0.05
60 11 0.10
61 2 0.02
63 10 0.09
65 10 0.09
67 2 0.02
68 11 0.10
69 6 0.05
70 7 0.06
71 14 0.12
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (58 bp):
ATTTATTAATTATATTTAAAATTTTAAAATATTTCATGTGTAATTAAATTTACAAATA
Found at i:3600288 original size:68 final size:68
Alignment explanation
Indices: 3600216--3600419 Score: 234
Period size: 68 Copynumber: 3.1 Consensus size: 68
3600206 TTCATGTGTA
3600216 ATTAAATTTACAAATAATTTATTAATTATTAAAAAATTATTCCAAATGTATATTTTATGTATAAT
1 ATTAAATTTACAAATAATTTATTAATTATTAAAAAATTATTCCAAATGTATATTTTATGTATAAT
3600281 TAT
66 TAT
** ** * *
3600284 ATTAAATTATTTAAATATTATTTATT-ATTATATTTAAAATT-TT--AAA---ATATTTCATGTG
1 ATTAAATT-TACAAATA--ATTTATTAATTAT-TAAAAAATTATTCCAAATGTATATTTTATGTA
3600342 T-A--AT
62 TAATTAT
3600346 -T-AAATTTACAAATAATTTATTAATTATTAAAAAATTATTCCAAATGTATATTTTATGTATAAT
1 ATTAAATTTACAAATAATTTATTAATTATTAAAAAATTATTCCAAATGTATATTTTATGTATAAT
3600409 TAT
66 TAT
3600412 ATTAAATT
1 ATTAAATT
3600420 ATTTAAATAT
Statistics
Matches: 108, Mismatches: 12, Indels: 32
0.71 0.08 0.21
Matches are distributed among these distances:
57 14 0.13
58 7 0.06
59 6 0.06
60 8 0.07
61 1 0.01
62 2 0.02
63 11 0.10
64 2 0.02
65 11 0.10
66 2 0.02
67 1 0.01
68 16 0.15
69 6 0.06
70 7 0.06
71 14 0.13
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (68 bp):
ATTAAATTTACAAATAATTTATTAATTATTAAAAAATTATTCCAAATGTATATTTTATGTATAAT
TAT
Found at i:3600456 original size:128 final size:128
Alignment explanation
Indices: 3600144--3600453 Score: 568
Period size: 128 Copynumber: 2.4 Consensus size: 128
3600134 TTTATAATTC
* *
3600144 ATGTATCATTAAATTAAATTATTTAAATATTATTTATTATTATATTTAAAATTTTAAAATATTTC
1 ATGTATAATTATATTAAATTATTTAAATATTATTTATTATTATATTTAAAATTTTAAAATATTTC
3600209 ATGTGTAATTAAATTTACAAATAATTTATTAATTATTAAAAAATTATTCCAAATGTATATTTT
66 ATGTGTAATTAAATTTACAAATAATTTATTAATTATTAAAAAATTATTCCAAATGTATATTTT
3600272 ATGTATAATTATATTAAATTATTTAAATATTATTTATTATTATATTTAAAATTTTAAAATATTTC
1 ATGTATAATTATATTAAATTATTTAAATATTATTTATTATTATATTTAAAATTTTAAAATATTTC
3600337 ATGTGTAATTAAATTTACAAATAATTTATTAATTATTAAAAAATTATTCCAAATGTATATTTT
66 ATGTGTAATTAAATTTACAAATAATTTATTAATTATTAAAAAATTATTCCAAATGTATATTTT
* * *
3600400 ATGTATAATTATATTAAATTATTTAAATATTATCTA-AATTATTTTTAAAATTTT
1 ATGTATAATTATATTAAATTATTTAAATATTATTTATTATTATATTTAAAATTTT
3600454 TAATATCACC
Statistics
Matches: 177, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
127 16 0.09
128 161 0.91
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (128 bp):
ATGTATAATTATATTAAATTATTTAAATATTATTTATTATTATATTTAAAATTTTAAAATATTTC
ATGTGTAATTAAATTTACAAATAATTTATTAATTATTAAAAAATTATTCCAAATGTATATTTT
Found at i:3601324 original size:15 final size:16
Alignment explanation
Indices: 3601299--3601328 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
3601289 TATATCTCTC
3601299 TTTTTTAAAATATTTA
1 TTTTTTAAAATATTTA
3601315 TTTTTT-AAATATTT
1 TTTTTTAAAATATTT
3601329 TTCTATATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTTTTAAAATATTTA
Found at i:3602280 original size:18 final size:18
Alignment explanation
Indices: 3602257--3602293 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
3602247 GTTTAAAAAG
3602257 TTTATAATACAAAAATTA
1 TTTATAATACAAAAATTA
3602275 TTTATAATACAAAAATTA
1 TTTATAATACAAAAATTA
3602293 T
1 T
3602294 CTTTAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (18 bp):
TTTATAATACAAAAATTA
Found at i:3602304 original size:18 final size:18
Alignment explanation
Indices: 3602257--3602304 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
3602247 GTTTAAAAAG
*
3602257 TTTATAATACAAAAATTA
1 TTTATAAAACAAAAATTA
*
3602275 TTTATAATACAAAAATTA
1 TTTATAAAACAAAAATTA
3602293 TCTT-TAAAACAA
1 T-TTATAAAACAA
3602305 TTAAGAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
18 26 0.93
19 2 0.07
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (18 bp):
TTTATAAAACAAAAATTA
Found at i:3602943 original size:25 final size:25
Alignment explanation
Indices: 3602886--3602947 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 25
3602876 GTGTAAATTT
3602886 ATTTT-ATATATTATAATAGTTAAA
1 ATTTTAATATATTATAATAGTTAAA
* **
3602910 GTTAAAATATATTATAATA-TTAAGA
1 ATTTTAATATATTATAATAGTTAA-A
3602935 ATTTTAATA-ATTA
1 ATTTTAATATATTA
3602948 AGTAAATGTG
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
24 10 0.33
25 20 0.67
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.47
Consensus pattern (25 bp):
ATTTTAATATATTATAATAGTTAAA
Found at i:3603051 original size:14 final size:14
Alignment explanation
Indices: 3603028--3603057 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
3603018 CATACAAATC
3603028 AGAAAAAAAAAGAA
1 AGAAAAAAAAAGAA
*
3603042 AGAAAGAAAAAGAA
1 AGAAAAAAAAAGAA
3603056 AG
1 AG
3603058 TCACGCACGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (14 bp):
AGAAAAAAAAAGAA
Found at i:3605064 original size:13 final size:13
Alignment explanation
Indices: 3605046--3605072 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3605036 GAATGATGCT
3605046 TTGATGATATAAA
1 TTGATGATATAAA
3605059 TTGATGATATAAA
1 TTGATGATATAAA
3605072 T
1 T
3605073 GTGGTACCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGATGATATAAA
Found at i:3610460 original size:32 final size:32
Alignment explanation
Indices: 3610413--3610500 Score: 97
Period size: 31 Copynumber: 2.8 Consensus size: 32
3610403 ACTGAGCTCT
* * * * *
3610413 AAAAATTTTGAAAAATTTTCATTAGGCTCTTC
1 AAAATTTTTGGAAAATTTTCATTAAGCCCTCC
*
3610445 AAAATTTTTGGAAAATCTT-ATTAAGCCCTCC
1 AAAATTTTTGGAAAATTTTCATTAAGCCCTCC
* *
3610476 AAAATTTTTAGAAAATTCTCATTAA
1 AAAATTTTTGGAAAATTTTCATTAA
3610501 TTTGTTCAAT
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
31 25 0.54
32 21 0.46
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.39
Consensus pattern (32 bp):
AAAATTTTTGGAAAATTTTCATTAAGCCCTCC
Found at i:3615472 original size:26 final size:28
Alignment explanation
Indices: 3615443--3615499 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
3615433 AGGTATAACA
*
3615443 ATAATATGATA-TAAAAG-TATATATAT
1 ATAATACGATATTAAAAGATATATATAT
*
3615469 ATAATACGATATTAAAAGATGTATATAT
1 ATAATACGATATTAAAAGATATATATAT
3615497 ATA
1 ATA
3615500 TTAGGAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 10 0.37
27 6 0.22
28 11 0.41
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.37
Consensus pattern (28 bp):
ATAATACGATATTAAAAGATATATATAT
Found at i:3615649 original size:18 final size:21
Alignment explanation
Indices: 3615615--3615657 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 21
3615605 GGATATGCAT
3615615 ATGATATATATATATTA-AAA
1 ATGATATATATATATTAGAAA
3615635 ATGATA-ATA-ATATTAGAAA
1 ATGATATATATATATTAGAAA
3615654 ATGA
1 ATGA
3615658 CTATTAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.27
19 10 0.45
20 6 0.27
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (21 bp):
ATGATATATATATATTAGAAA
Found at i:3615756 original size:21 final size:21
Alignment explanation
Indices: 3615691--3615757 Score: 55
Period size: 24 Copynumber: 3.0 Consensus size: 21
3615681 TACATACCAA
*
3615691 TACATGATAATATTTAAAAGTATG
1 TACATAATAATA-TTAAAA--ATG
3615715 TACATAATATATATTAGAAAATG
1 TACATAATA-ATATTA-AAAATG
*
3615738 TACA-CATAATATGTAAAAAT
1 TACATAATAATAT-TAAAAAT
3615758 ATATATATGC
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
21 9 0.24
22 5 0.13
23 7 0.18
24 11 0.29
25 6 0.16
ACGTcount: A:0.51, C:0.06, G:0.09, T:0.34
Consensus pattern (21 bp):
TACATAATAATATTAAAAATG
Found at i:3616030 original size:26 final size:26
Alignment explanation
Indices: 3615984--3616039 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
3615974 AACGCTGATA
*
3615984 GATAAAAACATAAAAACAATAATAGT
1 GATAAAAACATAAAAACAATAATAAT
* *
3616010 GATAAAAA-ATAAAAGATAATAGTAAT
1 GATAAAAACATAAAA-ACAATAATAAT
3616036 GATA
1 GATA
3616040 GTTGTAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.64, C:0.04, G:0.11, T:0.21
Consensus pattern (26 bp):
GATAAAAACATAAAAACAATAATAAT
Found at i:3622349 original size:16 final size:16
Alignment explanation
Indices: 3622325--3622356 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
3622315 CTTCTCTTTC
3622325 TTTTCTTTTCCTTTTT
1 TTTTCTTTTCCTTTTT
*
3622341 TTTTTTTTTCCTTTTT
1 TTTTCTTTTCCTTTTT
3622357 GTCTGGAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTCTTTTCCTTTTT
Found at i:3625748 original size:23 final size:24
Alignment explanation
Indices: 3625722--3625774 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
3625712 ACAAACCAAC
*
3625722 AATAAATAAAAAATTTTAA-TAAA
1 AATAAATAAAAAATTTAAATTAAA
* * *
3625745 AATATATAAATAATTTAAATTATA
1 AATAAATAAAAAATTTAAATTAAA
3625769 AATAAA
1 AATAAA
3625775 ATAAGCACAC
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 16 0.67
24 8 0.33
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (24 bp):
AATAAATAAAAAATTTAAATTAAA
Found at i:3632866 original size:17 final size:18
Alignment explanation
Indices: 3632846--3632896 Score: 77
Period size: 18 Copynumber: 2.8 Consensus size: 18
3632836 AAGCCCTTTT
3632846 AAAATTTAAAATTATTAA
1 AAAATTTAAAATTATTAA
3632864 AAAATTATAAAATTA-TAA
1 AAAATT-TAAAATTATTAA
*
3632882 AAACTTTAAAATTAT
1 AAAATTTAAAATTAT
3632897 AATTTTTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 8 0.27
18 14 0.47
19 8 0.27
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
AAAATTTAAAATTATTAA
Found at i:3632897 original size:17 final size:16
Alignment explanation
Indices: 3632846--3632898 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 16
3632836 AAGCCCTTTT
3632846 AAAATTTAAAATTATTAA
1 AAAATTTAAAATTA-T-A
3632864 AAAATTATAAAATTATA
1 AAAATT-TAAAATTATA
3632881 AAAACTTTAAAATTATA
1 AAAA-TTTAAAATTATA
3632898 A
1 A
3632899 TTTTTTTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
17 16 0.48
18 9 0.27
19 8 0.24
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (16 bp):
AAAATTTAAAATTATA
Found at i:3633804 original size:19 final size:19
Alignment explanation
Indices: 3633778--3633815 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
3633768 ATTAATTTTT
3633778 AAATTTTTAAAAA-TAAAA
1 AAATTTTTAAAAATTAAAA
3633796 AAATATTTTAAAAATTAAAA
1 AAAT-TTTTAAAAATTAAAA
3633816 GTCATTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 9 0.50
20 5 0.28
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
AAATTTTTAAAAATTAAAA
Found at i:3636687 original size:18 final size:18
Alignment explanation
Indices: 3636674--3636719 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
3636664 CTGATGATAT
3636674 TGACGATGAAGATGTAAA
1 TGACGATGAAGATGTAAA
3636692 TGACGATGAAGATGTAAA
1 TGACGATGAAGATGTAAA
3636710 TGACGATGAA
1 TGACGATGAA
3636720 AACATTAACG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.43, C:0.07, G:0.28, T:0.22
Consensus pattern (18 bp):
TGACGATGAAGATGTAAA
Found at i:3641945 original size:145 final size:145
Alignment explanation
Indices: 3641412--3642584 Score: 1541
Period size: 145 Copynumber: 8.1 Consensus size: 145
3641402 TTGGTATTTA
*
3641412 TTTTATTTTCGGATTTTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTATATTATTTTAG
1 TTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTATATTATTTTAG
* *
3641477 TACATAATGTTTCAAATGTATTATTTTTGTATTTTTTTATATTAATTTA-ATAAAAAAACTCTGA
66 TACATAATGTTTCAAATGTATTATTTTAG--TTTTTTTATATTAATTTAGAAAAAAAAACTCTGA
* * *
3641541 TTTTGACCGTTTGTTTTTTTTT
129 TTTTGGCC-----CTTTTTATT
* * *
3641563 ATTTTATTTTCGGATTTTACTTTTTAAAATACACTATTTTTGTATTTTATTTTTTATATTATTTT
1 -TTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTA-TTTTTATATTATTTT
*
3641628 AGTACATAATG-TTCAAAATGTATTATTTTAGTTTTTTTATATTAATTT--AATAAAAAACTCTG
64 AGTACATAATGTTTC-AAATGTATTATTTTAGTTTTTTTATATTAATTTAGAAAAAAAAACTCTG
* *
3641690 ATTTTGGCCGTTTATTTTT
128 ATTTTGGCCCTTT-TTATT
*
3641709 ATTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCTTATTTTATTTTTTTATATTATTT
1 -TTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTA--TTTTTATATTATTT
3641774 TAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGAAAAAAAAACTCTG
63 TAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGAAAAAAAAACTCTG
3641839 ATTTTGGCCCTTTTTATT
128 ATTTTGGCCCTTTTTATT
**
3641857 TTTTATTTTTAGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTATATTATTTTAG
1 TTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTATATTATTTTAG
3641922 TACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGAAAAAAAAACTCTGATT
66 TACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGAAAAAAAAACTCTGATT
*
3641987 TTGGCCTTTTTTA-T
131 TTGGCCCTTTTTATT
* * *
3642001 TTTTATTTTCGGATTTTATTTTTTAAAATTTATTATTTTCGTATTTTGTTTTTTATATTATTTTA
1 TTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTT-ATTTTTATATTATTTTA
*
3642066 GTACATAATGTTTC--CTGTATTATTTTAGTTTTTTTATATTAATTTAG--AAAAAAACTCTGAT
65 GTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGAAAAAAAAACTCTGAT
3642127 TTTGGCCCTTTTTA-T
130 TTTGGCCCTTTTTATT
** * * * * *
3642142 TTTTATTTTTAGATTTTATTTTTTAAGATATATTA-TTTCGTTTTTTGTTTTTTATATTATTTTT
1 TTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTT-ATTTTTATATTATTTTA
* * * *
3642206 TTACATAATGTTTC--ATGTATTATTTTAGTTTTTTTATATTAATTTAG---TAAAAATTGTGAT
65 GTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGAAAAAAAAACTCTGAT
3642266 TTTGG-CCTTTTT-TT
130 TTTGGCCCTTTTTATT
* * *
3642280 ATTTTGTTTTCGGATTTTATTTTTTAAAATACACTATTTTCATATTTTATTTTTTATATTATTTT
1 -TTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTA-TTTTTATATTATTTT
* * *
3642345 AGTACATAATGTTTCAAAGGTATTATTTTAG-TTTTTTATATTAATTTAG--TAAAAAATTCTGA
64 AGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGAAAAAAAAACTCTGA
** *
3642407 TTTTGGTCGTTTGTTTTTT
129 TTTTGG-CCCTT-TTTATT
* *
3642426 ATTTTATTTTCGGATTTTATTTTTCAAAATATACTATTTTCGTATTTTATTTTTTTATTATTTTA
1 -TTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTATATTATTTTA
* * * * *
3642491 GTTCATAATGTTTCATATGTATTATTTTAGTATATTTATATTAATTT--AATAAAAAACTCTGAT
65 GTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGAAAAAAAAACTCTGAT
*
3642554 TTTGG-CCTTTTT-TA
130 TTTGGCCCTTTTTATT
*
3642568 TTTTATTTTTGGATTTT
1 TTTTATTTTCGGATTTT
3642585 TTAAAATATA
Statistics
Matches: 930, Mismatches: 69, Indels: 55
0.88 0.07 0.05
Matches are distributed among these distances:
138 8 0.01
139 44 0.05
140 109 0.12
141 93 0.10
142 30 0.03
143 35 0.04
144 48 0.05
145 172 0.18
146 129 0.14
147 105 0.11
148 7 0.01
149 25 0.03
150 20 0.02
151 17 0.02
152 47 0.05
153 41 0.04
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.59
Consensus pattern (145 bp):
TTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTATATTATTTTAG
TACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGAAAAAAAAACTCTGATT
TTGGCCCTTTTTATT
Found at i:3642039 original size:30 final size:29
Alignment explanation
Indices: 3641999--3642055 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
3641989 GGCCTTTTTT
3641999 ATTTTTATTTTCGGATTTTATTTTTTAAA
1 ATTTTTATTTTCGGATTTTATTTTTTAAA
* *
3642028 ATTTATTATTTTCGTATTTTGTTTTTTA
1 ATTT-TTATTTTCGGATTTTATTTTTTA
3642056 TATTATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.21, C:0.04, G:0.07, T:0.68
Consensus pattern (29 bp):
ATTTTTATTTTCGGATTTTATTTTTTAAA
Found at i:3642433 original size:570 final size:578
Alignment explanation
Indices: 3641408--3642584 Score: 1738
Period size: 570 Copynumber: 2.0 Consensus size: 578
3641398 TATTTTGGTA
3641408 TTTATTTTATTTTCGGATTTTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTATATTATT
1 TTTATTTTATTTTCGGATTTTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTATATTATT
* *
3641473 TTAGTACATAATGTTTCAAATGTATTATTTTTGTATTTTTTTATATTAATTTAATAAAAAAACTC
66 TTAGTACATAATGTTTC-AATGTATTATTTTAG-ATTTTTTTATATTAATTTAAGAAAAAAACTC
* * *
3641538 TGATTTTGACCGTTTGTTTTTTTTTATTTTATTTTCGGATTTTACTTTTTAAAATACACTATTTT
129 TGATTTTGACCGCTTGTTTATTTTTA--TTATTTTCAGATTTTACTTTTTAAAATACACTATTTT
*
3641603 TGTATTTTATTTTTTATATTATTTTAGTACATAATGTTCAAAATGTATTATTTTAGTTTTTTTAT
192 CGTATTTTATTTTTTATATTATTTTAGTACATAATGTTC--AATGTATTATTTTAGTTTTTTTAT
3641668 ATTAATTTAATAAAAAACTCTGATTTTGGCCGTTTATTTTTATTTTATTTTCGGATTTTATTTTT
255 ATTAATTTAATAAAAAACTCTGATTTTGGCCG-TTATTTTTATTTTATTTTCGGATTTTATTTTT
* * *
3641733 TAAAATATACTATTTTCTTATTTTATTTTTTTATATTATTTTAGTACATAATGTTTCAAATGTAT
319 TAAAATACACTATTTTCATATTTTATTTTTTTATATTATTTTAGTACATAATGTTTCAAAGGTAT
3641798 TATTTTAGTTTTTTTATATTAATTTAGAAAAAAAAACTCTGATTTTGGCCCTTTTTATTTTTTAT
384 TATTTTAGTTTTTTTATATTAATTTAG-AAAAAAAACTCTGATTTTGGCCCTTTTTATTTTTTAT
* *
3641863 TTTTAGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTATATTATTTTAGTACATA
448 TTTCAGATTTTATTTTTCAAAATATACTATTTTCGTATTTTATTTTTATATTATTTTAGTACATA
* *
3641928 ATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGAAAAAAAAACTCTGATTTTGGCC
513 ATGTTTCAAATGTATTATTTTAGTATATTTATATTAATTT--AAAAAAAAACTCTGATTTTGGCC
3641993 TTT
576 TTT
* *
3641996 TTTATTTTTATTTTCGGATTTTATTTTTTAAAATTTATTATTTTCGTATTTTGTTTTTTATATTA
1 TTTA-TTTTATTTTCGGATTTTATTTTTTAAAATATATTATTTTCGTATTTT-ATTTTTATATTA
*
3642061 TTTTAGTACATAATGTTTC-CTGTATTATTTTAG-TTTTTTTATATTAATTT-AGAAAAAAACTC
64 TTTTAGTACATAATGTTTCAATGTATTATTTTAGATTTTTTTATATTAATTTAAGAAAAAAACTC
* * * * *
3642123 TGATTTTGGCC-CTT-TTTATTTTTA-T-TTTT-AGATTTTATTTTTTAAGATATATTA-TTTCG
129 TGATTTTGACCGCTTGTTTATTTTTATTATTTTCAGATTTTACTTTTTAAAATACACTATTTTCG
* * **
3642182 TTTTTTGTTTTTTATATTATTTTTTTACATAATGTTTC-ATGTATTATTTTAGTTTTTTTATATT
194 TATTTTATTTTTTATATTATTTTAGTACATAATG-TTCAATGTATTATTTTAGTTTTTTTATATT
* * * *
3642246 AATTTAGT-AAAAATTGTGATTTTGGCC-TT-TTTTTATTTTGTTTTCGGATTTTATTTTTTAAA
258 AATTTAATAAAAAACTCTGATTTTGGCCGTTATTTTTATTTTATTTTCGGATTTTATTTTTTAAA
3642308 ATACACTATTTTCATATTTTA-TTTTTTATATTATTTTAGTACATAATGTTTCAAAGGTATTATT
323 ATACACTATTTTCATATTTTATTTTTTTATATTATTTTAGTACATAATGTTTCAAAGGTATTATT
* * ** *
3642372 TTAG-TTTTTTATATTAATTTAG-TAAAAAATTCTGATTTTGGTCGTTTGTTTTTTATTTTATTT
388 TTAGTTTTTTTATATTAATTTAGAAAAAAAACTCTGATTTTGG-CCCTT-TTTATT-TTTTATTT
* * *
3642435 TCGGATTTTATTTTTCAAAATATACTATTTTCGTATTTTATTTTTTTATTATTTTAGTTCATAAT
450 TCAGATTTTATTTTTCAAAATATACTATTTTCGTATTTTATTTTTATATTATTTTAGTACATAAT
* *
3642500 GTTTCATATGTATTATTTTAGTATATTTATATTAATTTAATAAAAAACTCTGATTTTGGCCTTT
515 GTTTCAAATGTATTATTTTAGTATATTTATATTAATTTAAAAAAAAACTCTGATTTTGGCCTTT
*
3642564 TTTATTTTATTTTTGGATTTT
1 TTTATTTTATTTTCGGATTTT
3642585 TTAAAATATA
Statistics
Matches: 543, Mismatches: 40, Indels: 33
0.88 0.06 0.05
Matches are distributed among these distances:
567 33 0.06
568 32 0.06
569 23 0.04
570 149 0.27
571 51 0.09
572 2 0.00
574 17 0.03
575 33 0.06
577 34 0.06
578 23 0.04
579 4 0.01
580 1 0.00
583 9 0.02
584 2 0.00
585 21 0.04
586 17 0.03
588 16 0.03
589 46 0.08
590 30 0.06
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.59
Consensus pattern (578 bp):
TTTATTTTATTTTCGGATTTTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTATATTATT
TTAGTACATAATGTTTCAATGTATTATTTTAGATTTTTTTATATTAATTTAAGAAAAAAACTCTG
ATTTTGACCGCTTGTTTATTTTTATTATTTTCAGATTTTACTTTTTAAAATACACTATTTTCGTA
TTTTATTTTTTATATTATTTTAGTACATAATGTTCAATGTATTATTTTAGTTTTTTTATATTAAT
TTAATAAAAAACTCTGATTTTGGCCGTTATTTTTATTTTATTTTCGGATTTTATTTTTTAAAATA
CACTATTTTCATATTTTATTTTTTTATATTATTTTAGTACATAATGTTTCAAAGGTATTATTTTA
GTTTTTTTATATTAATTTAGAAAAAAAACTCTGATTTTGGCCCTTTTTATTTTTTATTTTCAGAT
TTTATTTTTCAAAATATACTATTTTCGTATTTTATTTTTATATTATTTTAGTACATAATGTTTCA
AATGTATTATTTTAGTATATTTATATTAATTTAAAAAAAAACTCTGATTTTGGCCTTT
Found at i:3642755 original size:11 final size:11
Alignment explanation
Indices: 3642739--3642769 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
3642729 AAATAAATTA
3642739 AATAAAATAAT
1 AATAAAATAAT
3642750 AATAAAATAAT
1 AATAAAATAAT
3642761 AATAAAATA
1 AATAAAATA
3642770 TTTTTTGTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:3643018 original size:27 final size:26
Alignment explanation
Indices: 3642969--3643031 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 26
3642959 TATAAATCAT
* *
3642969 TTATTTCCTTAAATTAACAATTAACAA
1 TTATTTCCTTAAATAAAAAATT-ACAA
*
3642996 TTATTTCCTTAAA-AAAAATATTACAT
1 TTATTTCCTTAAATAAAAA-ATTACAA
*
3643022 TTTTTTCCTT
1 TTATTTCCTT
3643032 CCTTCCCTCC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
26 15 0.48
27 16 0.52
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.48
Consensus pattern (26 bp):
TTATTTCCTTAAATAAAAAATTACAA
Found at i:3643138 original size:11 final size:11
Alignment explanation
Indices: 3643118--3643142 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
3643108 CTTCTTCTTC
3643118 TTCTCTTCTCT
1 TTCTCTTCTCT
3643129 TTCTCTTCTCT
1 TTCTCTTCTCT
3643140 TTC
1 TTC
3643143 CCCCTTTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (11 bp):
TTCTCTTCTCT
Found at i:3645758 original size:17 final size:18
Alignment explanation
Indices: 3645736--3645770 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
3645726 CTCTATTAGT
3645736 TTAAATATTATA-ATTTA
1 TTAAATATTATATATTTA
*
3645753 TTAAATTTTATATATTTA
1 TTAAATATTATATATTTA
3645771 AAAAAAACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTAAATATTATATATTTA
Found at i:3648159 original size:20 final size:21
Alignment explanation
Indices: 3648122--3648164 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
3648112 GTAAAATGCA
* *
3648122 AATTAAAAATTGAGAAAAAAG
1 AATTAAAAATGGAAAAAAAAG
3648143 AATTAAAAA-GGAAAAAAAAG
1 AATTAAAAATGGAAAAAAAAG
3648163 AA
1 AA
3648165 CCTCCATGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (21 bp):
AATTAAAAATGGAAAAAAAAG
Found at i:3651116 original size:7 final size:7
Alignment explanation
Indices: 3651104--3651143 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
3651094 TTTTAATCTG
3651104 AACCTTA
1 AACCTTA
3651111 AACCTTA
1 AACCTTA
*
3651118 AACTTTA
1 AACCTTA
*
3651125 AACCCTA
1 AACCTTA
3651132 AACCTTA
1 AACCTTA
3651139 AACCT
1 AACCT
3651144 CAGACTCTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (7 bp):
AACCTTA
Found at i:3651127 original size:14 final size:14
Alignment explanation
Indices: 3651108--3651179 Score: 56
Period size: 14 Copynumber: 5.1 Consensus size: 14
3651098 AATCTGAACC
3651108 TTAAACCTTAAACT
1 TTAAACCTTAAACT
* *
3651122 TTAAACCCTAAACC
1 TTAAACCTTAAACT
* *
3651136 TTAAACCTCAGACT
1 TTAAACCTTAAACT
* *
3651150 CTAAA-CTCTGAACT
1 TTAAACCT-TAAACT
**
3651164 TCGAACCTTAAACT
1 TTAAACCTTAAACT
3651178 TT
1 TT
3651180 TGAGCTCTAA
Statistics
Matches: 41, Mismatches: 15, Indels: 4
0.68 0.25 0.07
Matches are distributed among these distances:
13 2 0.05
14 37 0.90
15 2 0.05
ACGTcount: A:0.38, C:0.28, G:0.04, T:0.31
Consensus pattern (14 bp):
TTAAACCTTAAACT
Found at i:3651153 original size:21 final size:21
Alignment explanation
Indices: 3651104--3651155 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
3651094 TTTTAATCTG
* * *
3651104 AACCTTAAACCTTAAACTTTA
1 AACCCTAAACCTTAAACCTCA
3651125 AACCCTAAACCTTAAACCTCA
1 AACCCTAAACCTTAAACCTCA
* *
3651146 GACTCTAAAC
1 AACCCTAAAC
3651156 TCTGAACTTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.42, C:0.31, G:0.02, T:0.25
Consensus pattern (21 bp):
AACCCTAAACCTTAAACCTCA
Found at i:3652307 original size:18 final size:17
Alignment explanation
Indices: 3652283--3652333 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
3652273 TCTAAAAACA
3652283 AAATAAATTTATAATTT
1 AAATAAATTTATAATTT
3652300 ATAATAAA-TTATAAATTT
1 A-AATAAATTTAT-AATTT
**
3652318 AAATATTTTTATAATT
1 AAATAAATTTATAATT
3652334 AAACTATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
17 13 0.45
18 16 0.55
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
AAATAAATTTATAATTT
Found at i:3657005 original size:33 final size:33
Alignment explanation
Indices: 3656912--3657007 Score: 111
Period size: 34 Copynumber: 2.9 Consensus size: 33
3656902 GTGTTAAGTT
* *
3656912 TATTGCTACTGTAATGATTTGTTATAAGCATGA
1 TATTGCTACCGTATTGATTTGTTATAAGCATGA
* * * * *
3656945 TAATCCTTACCATATTGATTTGCTATAAGCATGC
1 TATTGC-TACCGTATTGATTTGTTATAAGCATGA
*
3656979 TATTGCTACCGTATTGATCTGTTATAAGC
1 TATTGCTACCGTATTGATTTGTTATAAGC
3657008 TTGTCATATT
Statistics
Matches: 50, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
33 24 0.48
34 26 0.52
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.41
Consensus pattern (33 bp):
TATTGCTACCGTATTGATTTGTTATAAGCATGA
Found at i:3669355 original size:44 final size:42
Alignment explanation
Indices: 3669300--3669455 Score: 154
Period size: 44 Copynumber: 3.6 Consensus size: 42
3669290 ATCTACTCTG
* * *
3669300 CTGTAACTTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCA
1 CTGTAACTTCAGGGAGATAAGAT-CTTT-CTTCAATCTGCTCCA
* * * *
3669344 CTGTAACTTCAGGGAGATAGGATAGTGTCTTCAATCTGCTCCG
1 CTGTAACTTCAGGGAGATAAGAT-CTTTCTTCAATCTGCTCCA
*
3669387 CTGTAA-TCTCAGGGAGATAAGAT-TTCTGGCCTCAATCTGCTCCA
1 CTGTAACT-TCAGGGAGATAAGATCTT-T--CTTCAATCTGCTCCA
*
3669431 CTGTAACCTCAGGGAGATAAGATCT
1 CTGTAACTTCAGGGAGATAAGATCT
3669456 GAAATTCTCT
Statistics
Matches: 93, Mismatches: 13, Indels: 11
0.79 0.11 0.09
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 31 0.33
44 58 0.62
45 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (42 bp):
CTGTAACTTCAGGGAGATAAGATCTTTCTTCAATCTGCTCCA
Found at i:3669518 original size:46 final size:46
Alignment explanation
Indices: 3669426--3669519 Score: 116
Period size: 46 Copynumber: 2.0 Consensus size: 46
3669416 CCTCAATCTG
* * ** *
3669426 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTCTGGTCTA
1 CTCCACTGTAACCTCAGGGAAATAAGACCTGAAATGATCTGCTCTA
** *
3669472 CTCCACTGTAACCTCAGGGAAATAAGACCTGATGTGATCTTCTCTA
1 CTCCACTGTAACCTCAGGGAAATAAGACCTGAAATGATCTGCTCTA
3669518 CT
1 CT
3669520 GTAACTTCAG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.29
Consensus pattern (46 bp):
CTCCACTGTAACCTCAGGGAAATAAGACCTGAAATGATCTGCTCTA
Found at i:3695321 original size:64 final size:64
Alignment explanation
Indices: 3695248--3695435 Score: 376
Period size: 64 Copynumber: 2.9 Consensus size: 64
3695238 AGAATGATGG
3695248 CCATTGATCAATTTAATTAAAGGCTAATTAACTAATTAATTAAGATTATATATATGTTATGAGT
1 CCATTGATCAATTTAATTAAAGGCTAATTAACTAATTAATTAAGATTATATATATGTTATGAGT
3695312 CCATTGATCAATTTAATTAAAGGCTAATTAACTAATTAATTAAGATTATATATATGTTATGAGT
1 CCATTGATCAATTTAATTAAAGGCTAATTAACTAATTAATTAAGATTATATATATGTTATGAGT
3695376 CCATTGATCAATTTAATTAAAGGCTAATTAACTAATTAATTAAGATTATATATATGTTAT
1 CCATTGATCAATTTAATTAAAGGCTAATTAACTAATTAATTAAGATTATATATATGTTAT
3695436 TAGTGGGAGA
Statistics
Matches: 124, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 124 1.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (64 bp):
CCATTGATCAATTTAATTAAAGGCTAATTAACTAATTAATTAAGATTATATATATGTTATGAGT
Found at i:3696337 original size:34 final size:34
Alignment explanation
Indices: 3696298--3696366 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
3696288 AGTATGAAAG
*
3696298 TATAAATAAAACATATGTACGATATATGAATACA
1 TATAAATAAAACATATGGACGATATATGAATACA
*
3696332 TATAAATAAAACATATGGATGATATATGAATACA
1 TATAAATAAAACATATGGACGATATATGAATACA
3696366 T
1 T
3696367 GTATATTATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.30
Consensus pattern (34 bp):
TATAAATAAAACATATGGACGATATATGAATACA
Found at i:3703343 original size:135 final size:136
Alignment explanation
Indices: 3703132--3703491 Score: 462
Period size: 135 Copynumber: 2.7 Consensus size: 136
3703122 GGATCTGCTG
* * * * * *
3703132 AAATCTGATCTGCTTCGCTCCTGCTCAACGAAGATAAGATTTGCTATAATTT-GATCTGCTTCAC
1 AAATTTGATCTGCTTCGCTCCTGCTCAATGAAGATAAGATCTGGTAT-ATTTAG-CCTGCTCCAC
* * * * *
3703196 TCCTGCTCAGTGAAGATAAGA-CTGGTGGCTGAAATCTGCTCCATTGTCGATCCATGGAGATAAG
64 TCCTGCTCAGTGAAGATAAGAGCTGATGACTGAAATCTGCTCCATCGCCGATACATGGAGATAAG
3703260 ATTCACCA
129 ATTCACCA
* * * *
3703268 AAATTTGATCTGCTCCGCTCCTGTTCAGTGAAGATAAGACCTGGTATATTTAGCCTGCTCCACTC
1 AAATTTGATCTGCTTCGCTCCTGCTCAATGAAGATAAGATCTGGTATATTTAGCCTGCTCCACTC
* * * *
3703333 CTGCTCAGTGAAGATAA-AGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGAT
66 CTGCTCAGTGAAGATAAGAGCTGATGACTGAAATCTGCTCCATCGCCGATACATGGAGATAAGAT
*
3703397 TCTCCA
131 TCACCA
*
3703403 AAATTTGATCTGCTTCACTCCTGCTCAATGAAGATAAGATCTGG--TATTTAGCCTGCTCCACTC
1 AAATTTGATCTGCTTCGCTCCTGCTCAATGAAGATAAGATCTGGTATATTTAGCCTGCTCCACTC
*
3703466 CTGCCCAGTGAAGATAAG-GCTGATGA
66 CTGCTCAGTGAAGATAAGAGCTGATGA
3703492 TATCTGTAAT
Statistics
Matches: 195, Mismatches: 26, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
133 43 0.22
134 1 0.01
135 111 0.57
136 40 0.21
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (136 bp):
AAATTTGATCTGCTTCGCTCCTGCTCAATGAAGATAAGATCTGGTATATTTAGCCTGCTCCACTC
CTGCTCAGTGAAGATAAGAGCTGATGACTGAAATCTGCTCCATCGCCGATACATGGAGATAAGAT
TCACCA
Found at i:3707240 original size:25 final size:25
Alignment explanation
Indices: 3707206--3707257 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
3707196 ACTAGAGTGT
3707206 CTATGTGAGGCAATGAAAAGTTATC
1 CTATGTGAGGCAATGAAAAGTTATC
3707231 CTATGTGAGGCAATGAAAAGTTATC
1 CTATGTGAGGCAATGAAAAGTTATC
3707256 CT
1 CT
3707258 TTGGGCTGGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (25 bp):
CTATGTGAGGCAATGAAAAGTTATC
Found at i:3710779 original size:21 final size:21
Alignment explanation
Indices: 3710753--3710797 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
3710743 GCTGGCTCAT
*
3710753 CATGTTGTTCTGTGACTCCAG
1 CATGTTGTTCTGGGACTCCAG
*
3710774 CATGTTTTTCTGGGACTCCAG
1 CATGTTGTTCTGGGACTCCAG
3710795 CAT
1 CAT
3710798 TTGATCCCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (21 bp):
CATGTTGTTCTGGGACTCCAG
Found at i:3716513 original size:14 final size:15
Alignment explanation
Indices: 3716487--3716515 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
3716477 CTTAGAGAAG
3716487 ATATAGAAATTTTAA
1 ATATAGAAATTTTAA
3716502 ATATAG-AATTTTAA
1 ATATAGAAATTTTAA
3716516 TAAAGAACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (15 bp):
ATATAGAAATTTTAA
Found at i:3725493 original size:43 final size:43
Alignment explanation
Indices: 3725446--3725533 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
3725436 GGTAAATATG
* *
3725446 TAAATTTACCTAAAAGGACTCAATTGCATGAAATGGATTAAAT
1 TAAATTTACCAAAAAGGACTCAATTGCATGAAATGGATCAAAT
3725489 TAAATTTACCAAAAAGGACTCAATTGCATGAAATGGATCAAAT
1 TAAATTTACCAAAAAGGACTCAATTGCATGAAATGGATCAAAT
3725532 TA
1 TA
3725534 TGTTGTTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.28
Consensus pattern (43 bp):
TAAATTTACCAAAAAGGACTCAATTGCATGAAATGGATCAAAT
Found at i:3727699 original size:363 final size:363
Alignment explanation
Indices: 3727020--3727748 Score: 1352
Period size: 363 Copynumber: 2.0 Consensus size: 363
3727010 AAAAGGGACA
3727020 TGAAATAGTGTCAGAGAGAAAAGTGGGGATTAAAAATCTTTTTATTTTCAATCAATCAATTTTCA
1 TGAAATAGTGTCAGAGAGAAAAGTGGGGATTAAAAATCTTTTTATTTTCAATCAATCAATTTTCA
** *
3727085 AAATTTTTTTCTAAGAAATAACTAAATCCTAACCAAACTAGTCTTCTAACCGTCACTTAATAGCT
66 AAATTTTTTTCTAAGAAATAACTAAATCCTAACCAAACTAGTCTTCTAACCACCACTTAACAGCT
3727150 TAATCCAATATTTGAATTAAATTCAATATCTGACACTTGGACGCACAAACATGAGAAACAGCAAA
131 TAATCCAATATTTGAATTAAATTCAATATCTGACACTTGGACGCACAAACATGAGAAACAGCAAA
3727215 AATAATCTCATTTTGCTCAAGCAGTGATTCAAACACAAGACCAAAGAGCAAGCTAACACCTTACC
196 AATAATCTCATTTTGCTCAAGCAGTGATTCAAACACAAGACCAAAGAGCAAGCTAACACCTTACC
* *
3727280 ACTAAACCAACAAGCTCATTCTATTACAAATTGAGGGAAATAGAATTTATGTCAAAT-ACTTAAA
261 ACTAAACCAACAAGCTCATTCTATTACAAATTGAGGGAAATACAATTTAAGTCAAATGA-TTAAA
3727344 GATAAAGATAGGAACAAAAATAGCAACAATTTCTAAGAG
325 GATAAAGATAGGAACAAAAATAGCAACAATTTCTAAGAG
*
3727383 TGAAATAGTGTCGGAGAGAAAAGTGGGGATTAAAAATCTTTTTATTTTCAATCAATCAATTTTCA
1 TGAAATAGTGTCAGAGAGAAAAGTGGGGATTAAAAATCTTTTTATTTTCAATCAATCAATTTTCA
*
3727448 AATTTTTTTTCTAAGAAATAACTAAATCCTAACCAAACTAGTCTTCTAACCACCACTTAACAGCT
66 AAATTTTTTTCTAAGAAATAACTAAATCCTAACCAAACTAGTCTTCTAACCACCACTTAACAGCT
*
3727513 TAATCCAATATTTGAATTAAATTCAATATCTGACACTTGGACGCACAAACATGAGAAATAGCAAA
131 TAATCCAATATTTGAATTAAATTCAATATCTGACACTTGGACGCACAAACATGAGAAACAGCAAA
3727578 AATAATCTCATTTTGCTCAAGCAGTGATTCAAACACAAGACCAAAGAGCAAGCTAACACCTTACC
196 AATAATCTCATTTTGCTCAAGCAGTGATTCAAACACAAGACCAAAGAGCAAGCTAACACCTTACC
*
3727643 ACTAAATCAACAAGCTCATTCTATTACAAATTGAGGGAAATACAATTTAAGTCAAATGATTAAAG
261 ACTAAACCAACAAGCTCATTCTATTACAAATTGAGGGAAATACAATTTAAGTCAAATGATTAAAG
*
3727708 ATAAAGATAGGAACAAAAATAGCAACAATTTTTAAGAG
326 ATAAAGATAGGAACAAAAATAGCAACAATTTCTAAGAG
3727746 TGA
1 TGA
3727749 GATTTGAACA
Statistics
Matches: 355, Mismatches: 10, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
363 354 1.00
364 1 0.00
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.28
Consensus pattern (363 bp):
TGAAATAGTGTCAGAGAGAAAAGTGGGGATTAAAAATCTTTTTATTTTCAATCAATCAATTTTCA
AAATTTTTTTCTAAGAAATAACTAAATCCTAACCAAACTAGTCTTCTAACCACCACTTAACAGCT
TAATCCAATATTTGAATTAAATTCAATATCTGACACTTGGACGCACAAACATGAGAAACAGCAAA
AATAATCTCATTTTGCTCAAGCAGTGATTCAAACACAAGACCAAAGAGCAAGCTAACACCTTACC
ACTAAACCAACAAGCTCATTCTATTACAAATTGAGGGAAATACAATTTAAGTCAAATGATTAAAG
ATAAAGATAGGAACAAAAATAGCAACAATTTCTAAGAG
Found at i:3735323 original size:27 final size:22
Alignment explanation
Indices: 3735268--3735311 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
3735258 CTAATTACAT
3735268 AACCCAACTACATAACTAATAC
1 AACCCAACTACATAACTAATAC
3735290 AACCCAACTACATAACTAATAC
1 AACCCAACTACATAACTAATAC
3735312 CCTACAGCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (22 bp):
AACCCAACTACATAACTAATAC
Found at i:3738220 original size:132 final size:131
Alignment explanation
Indices: 3737967--3738357 Score: 461
Period size: 132 Copynumber: 3.0 Consensus size: 131
3737957 AATTATTCGT
*
3737967 TTAAAAATTCTTTAAAACGAAGGTGATGTTCGATATTTGACAATTCGCGGAATCGTGCCCTAACG
1 TTAAAAATCCTTTAAAACGAAGGTGATGTTCGATATTTGACAATTCGCGGAATCGTGCCCTAACG
* * * *
3738032 TGCTGAGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATTCCTTCA-AATTTTCACTCATGT
66 TGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATGTTCCTTTAGAA-TTTCACTCATGT
3738096 CTC
130 -TC
* * * *
3738099 TTAAAAATCCTTTAAAACGAGGGCGATGTTCGATATTTGACAATTCGCGGAATTGTGCCCTAACA
1 TTAAAAATCCTTTAAAACGAAGGTGATGTTCGATATTTGACAATTCGCGGAATCGTGCCCTAACG
* * * *
3738164 TGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATGTCCCTTTAGAATTTCATTTACGTT
66 TGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATGTTCCTTTAGAATTTCACTCATGTT
*
3738229 T
131 C
* * * * * *
3738230 TCTAAAAA-CTCTTCAAAATGAAGGTAATATTCGA-AGTTTGGCAATTCG-GGTAATCGTACCCT
1 T-TAAAAATC-CTTTAAAACGAAGGTGATGTTCGATA-TTTGACAATTCGCGG-AATCGTGCCCT
* * *
3738292 AATGTGCTGGGTTGCAATTT-TCTGTTTGTCCAAAATGATCGAA-GATTCCTTTAGAATTTCACT
62 AACGTGCTGGGTTGCAATTTCTC-GTTTGTTCAAAATAATCGAATG-TTCCTTTAGAATTTCACT
3738355 CAT
125 CAT
3738358 ACTTTTTAAA
Statistics
Matches: 221, Mismatches: 31, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
131 9 0.04
132 210 0.95
133 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (131 bp):
TTAAAAATCCTTTAAAACGAAGGTGATGTTCGATATTTGACAATTCGCGGAATCGTGCCCTAACG
TGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATGTTCCTTTAGAATTTCACTCATGTT
C
Found at i:3749845 original size:133 final size:133
Alignment explanation
Indices: 3749607--3749911 Score: 351
Period size: 133 Copynumber: 2.3 Consensus size: 133
3749597 AATTCTACAG
* * * * ** * * * *
3749607 ATCTTGTCTCCCTGAAGTTGCAGTAGAGCGGATCGACGACGACGAATCGTGTCTTCCTAAAATTG
1 ATCTTATCTCCCTAAAGTTACAATAGAGAAGATCGAAGATGGCGAATCATGTCTTCCTAAAATTG
* * * *
3749672 CAGTGAAGCAGATTTAAACCACCATCCTAGCTTCCTAAAGTTGTAGTGGAGTAGGCTGAAGATTG
66 CAGTGAAGCAGATTTAAACCAACACCCTAGCTTCCTAAAGTTGTAGAGGAGTAGGCTAAAGATTG
*
3749737 TAA
131 CAA
* * * *
3749740 ATCTTATTTCCCTAAAGTTACAATAGAGTAGATCGAAGATGGCGAATCATGTCTTCCTGAAGTTG
1 ATCTTATCTCCCTAAAGTTACAATAGAGAAGATCGAAGATGGCGAATCATGTCTTCCTAAAATTG
* *
3749805 CAGTGAAGCAGATTTAAGCCAACACCCTATC-TCCTTAAAGTTGTAGAGGAGTAGGCTAAAGATT
66 CAGTGAAGCAGATTTAAACCAACACCCTAGCTTCC-TAAAGTTGTAGAGGAGTAGGCTAAAGATT
*
3749869 GCAG
130 GCAA
* * * * *
3749873 ATCTTGTCTCCCTGAAGTTCCAGTGGAGAAGATCGAAGA
1 ATCTTATCTCCCTAAAGTTACAATAGAGAAGATCGAAGA
3749912 GAACAAACCT
Statistics
Matches: 143, Mismatches: 28, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
132 3 0.02
133 140 0.98
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (133 bp):
ATCTTATCTCCCTAAAGTTACAATAGAGAAGATCGAAGATGGCGAATCATGTCTTCCTAAAATTG
CAGTGAAGCAGATTTAAACCAACACCCTAGCTTCCTAAAGTTGTAGAGGAGTAGGCTAAAGATTG
CAA
Found at i:3752725 original size:13 final size:13
Alignment explanation
Indices: 3752707--3752731 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3752697 TTGTGTGTTC
3752707 TTTATTTTATTTA
1 TTTATTTTATTTA
3752720 TTTATTTTATTT
1 TTTATTTTATTT
3752732 TTTCACAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:3757827 original size:132 final size:132
Alignment explanation
Indices: 3757577--3757966 Score: 459
Period size: 132 Copynumber: 3.0 Consensus size: 132
3757567 ATTATTCGTT
* * * *
3757577 TAAAAATTCTTTAAAACGAAGGCGATGTTCGATATTTGACAATTCGCGAAATCATGCCCTAACGT
1 TAAAAATCCTTTAAAACGAAGGCGATGTTCAATATTTGACAATTCGCGGAATCGTGCCCTAACGT
* * * *
3757642 GCTGGCTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATTCCTTCAAAATTTCACTCATGTCT
66 GCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATGTTCCTTTAGAATTTCACTCATGTCT
3757707 CC
131 CC
*
3757709 TAAAAATCCTTTAAAACGAGGGCGATGTTCAATATTTGACAATTCGCGGAATCGTGCCCTAACGT
1 TAAAAATCCTTTAAAACGAAGGCGATGTTCAATATTTGACAATTCGCGGAATCGTGCCCTAACGT
* * * *
3757774 GCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCATTTATGTTT
66 GCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATGTTCCTTTAGAATTTCACTCATGTCT
*
3757839 TC
131 CC
* ** * * * * *
3757841 TAAAAA-CTCTTCAAAACGAAGGTAATATTCGAA-GTTAGGCAATTCG-GGTAATCGTACCCTAA
1 TAAAAATC-CTTTAAAACGAAGGCGATGTTC-AATATTTGACAATTCGCGG-AATCGTGCCCTAA
* * *
3757903 TGTGCTGGGTTGCAATTT-TCTGTTTG-TCCAAAATGATCGAA-GATTCCTTTAGAACTTCACTC
63 CGTGCTGGGTTGCAATTTCTC-GTTTGCT-CAAAATAATCGAATG-TTCCTTTAGAATTTCACTC
3757965 AT
125 AT
3757967 ACTTTTTAAA
Statistics
Matches: 223, Mismatches: 29, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
131 7 0.03
132 214 0.96
133 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (132 bp):
TAAAAATCCTTTAAAACGAAGGCGATGTTCAATATTTGACAATTCGCGGAATCGTGCCCTAACGT
GCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATGTTCCTTTAGAATTTCACTCATGTCT
CC
Found at i:3761968 original size:63 final size:61
Alignment explanation
Indices: 3761859--3762065 Score: 227
Period size: 63 Copynumber: 3.3 Consensus size: 61
3761849 CAACACAGCT
* * *
3761859 TGGGCACACGCCCATGTGCCTTGGCCATGTGGTTTTTA-AGCACAAACAATGAGATACACGGCC
1 TGGGCACACG-CC-TGTGTCTTGGCCATGTGGTTTTTATA-CTCAAACAATGAGTTACACGGCC
** *
3761922 TGGGCACACGCCTGTGTCTTTGGCTGTGTGGTTTTTATACCTCAAACAATGAGTTACACAGCC
1 TGGGCACACGCCTGTGTC-TTGGCCATGTGGTTTTTATA-CTCAAACAATGAGTTACACGGCC
* * * * * *
3761985 TGGGCACACGCCTATATACCTAGCCATGTGGTTTTTATACTACAAACAGTGAGTTACACGGCT
1 TGGGCACACGCCTGTGT-CTTGGCCATGTGGTTTTTATACT-CAAACAATGAGTTACACGGCC
*
3762048 TGGGCACACGCCCGTGTC
1 TGGGCACACGCCTGTGTC
3762066 CCTGGCAGTG
Statistics
Matches: 121, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
61 5 0.04
62 21 0.17
63 94 0.78
64 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (61 bp):
TGGGCACACGCCTGTGTCTTGGCCATGTGGTTTTTATACTCAAACAATGAGTTACACGGCC
Found at i:3762077 original size:126 final size:126
Alignment explanation
Indices: 3761851--3762077 Score: 314
Period size: 126 Copynumber: 1.8 Consensus size: 126
3761841 ACATCCTGCA
* * * *
3761851 ACACAGCTTGGGCACACGCCCATGTGCCTTGGCCATGTGGTTTTTAAGCACAAACAATGAGATAC
1 ACACAGCCTGGGCACACGCCCATATACCTTAGCCATGTGGTTTTTAAGCACAAACAATGAGATAC
* ** *
3761916 ACGGCCTGGGCACACGCCTGTGTCTTTGGCTGTGTGGTTTTTATACCTCAAACAATGAGTT
66 ACGGCCTGGGCACACGCCCGTGTCCCTGGCAGTGTGGTTTTTATACCTCAAACAATGAGTT
* * *
3761977 ACACAGCCTGGGCACACGCCTATATACC-TAGCCATGTGGTTTTTATA-CTACAAACAGTGAGTT
1 ACACAGCCTGGGCACACGCCCATATACCTTAGCCATGTGGTTTTTA-AGC-ACAAACAATGAGAT
*
3762040 ACACGGCTTGGGCACACGCCCGTGTCCCTGGCAGTGTG
64 ACACGGCCTGGGCACACGCCCGTGTCCCTGGCAGTGTG
3762078 AACCCTGAAC
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
125 17 0.20
126 70 0.80
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (126 bp):
ACACAGCCTGGGCACACGCCCATATACCTTAGCCATGTGGTTTTTAAGCACAAACAATGAGATAC
ACGGCCTGGGCACACGCCCGTGTCCCTGGCAGTGTGGTTTTTATACCTCAAACAATGAGTT
Found at i:3767488 original size:24 final size:24
Alignment explanation
Indices: 3767461--3767512 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
3767451 TTAGTAAGTC
*
3767461 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
3767485 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
3767509 AAAT
1 AAAT
3767513 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:3768921 original size:24 final size:24
Alignment explanation
Indices: 3768894--3768945 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
3768884 TTAGTAAGTC
*
3768894 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
3768918 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
3768942 AAAT
1 AAAT
3768946 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:3769831 original size:19 final size:18
Alignment explanation
Indices: 3769799--3769840 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
3769789 TTTTTGATAT
* *
3769799 TTTTATTAATTAAATTTCA
1 TTTTAGTAAGTAAATTT-A
3769818 TTTTAGTAAGTAAATTTA
1 TTTTAGTAAGTAAATTTA
3769836 TTTTA
1 TTTTA
3769841 TGAAAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (18 bp):
TTTTAGTAAGTAAATTTA
Found at i:3770975 original size:23 final size:24
Alignment explanation
Indices: 3770944--3770993 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
3770934 AATATATTTT
*
3770944 TATTCTTTTTAATTTAATATTTA-A
1 TATTCTTTTTAA-TTAAAATTTATA
*
3770968 TATT-TTTTTTATTAAAATTTATA
1 TATTCTTTTTAATTAAAATTTATA
3770991 TAT
1 TAT
3770994 ACTCATCTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 9 0.39
23 10 0.43
24 4 0.17
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (24 bp):
TATTCTTTTTAATTAAAATTTATA
Found at i:3775722 original size:33 final size:33
Alignment explanation
Indices: 3775685--3775748 Score: 76
Period size: 33 Copynumber: 1.9 Consensus size: 33
3775675 AAAATGTATG
3775685 AAATAATT-AAAATTTTAAAAATCATTAAAAATA
1 AAAT-ATTGAAAATTTTAAAAATCATTAAAAATA
* * * *
3775718 AAATATTGATAATTTTTAAAATTATTTAAAA
1 AAATATTGAAAATTTTAAAAATCATTAAAAA
3775749 CATATACAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
32 3 0.12
33 23 0.88
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (33 bp):
AAATATTGAAAATTTTAAAAATCATTAAAAATA
Found at i:3780472 original size:18 final size:18
Alignment explanation
Indices: 3780445--3780537 Score: 159
Period size: 18 Copynumber: 5.2 Consensus size: 18
3780435 TACGACCGTT
3780445 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
3780463 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
3780481 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
3780499 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
3780517 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
3780535 TAC
1 TAC
3780538 AGTAGTTGGG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 70 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:3780492 original size:36 final size:36
Alignment explanation
Indices: 3780445--3780537 Score: 177
Period size: 36 Copynumber: 2.6 Consensus size: 36
3780435 TACGACCGTT
3780445 TACGGTACTATTCACGTATACGGCACTATTCACGTA
1 TACGGTACTATTCACGTATACGGCACTATTCACGTA
3780481 TACGGTACTATTCACGTATACGGCACTATTCACGTA
1 TACGGTACTATTCACGTATACGGCACTATTCACGTA
*
3780517 TACGGTACTGTTCACGTATAC
1 TACGGTACTATTCACGTATAC
3780538 AGTAGTTGGG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 56 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (36 bp):
TACGGTACTATTCACGTATACGGCACTATTCACGTA
Found at i:3787780 original size:60 final size:60
Alignment explanation
Indices: 3787706--3787859 Score: 220
Period size: 60 Copynumber: 2.6 Consensus size: 60
3787696 GAATGTCAAC
* *
3787706 TTAGAATT-AGAACTAAATTGATAAATTTTATAAATATTGAGAGTTTAATTTATTAAATCT
1 TTAGAATTCA-AACTAAATTGATAAATTTTATAAATATTAAGAGTTAAATTTATTAAATCT
* * *
3787766 TTAGAGTTCAAACTAAATTGATAAATTTTATAAATATTAAGGGTTAAATTTATTAAATTT
1 TTAGAATTCAAACTAAATTGATAAATTTTATAAATATTAAGAGTTAAATTTATTAAATCT
* * *
3787826 TTAGAATTCGAACTAAAATGATCAATTTTATAAA
1 TTAGAATTCAAACTAAATTGATAAATTTTATAAA
3787860 CGTTGAGAAT
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
60 83 0.99
61 1 0.01
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.42
Consensus pattern (60 bp):
TTAGAATTCAAACTAAATTGATAAATTTTATAAATATTAAGAGTTAAATTTATTAAATCT
Found at i:3788677 original size:17 final size:17
Alignment explanation
Indices: 3788649--3788687 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
3788639 CATAACTTTT
3788649 AAAAGTTAAAACTAAAAA
1 AAAAGTTAAAAC-AAAAA
*
3788667 TAAAG-TAAAACAAAAA
1 AAAAGTTAAAACAAAAA
3788683 AAAAG
1 AAAAG
3788688 AGTGAAGGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 9 0.47
17 6 0.32
18 4 0.21
ACGTcount: A:0.74, C:0.05, G:0.08, T:0.13
Consensus pattern (17 bp):
AAAAGTTAAAACAAAAA
Found at i:3789340 original size:20 final size:19
Alignment explanation
Indices: 3789315--3789369 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 19
3789305 TACTTTTCAC
*
3789315 TATTTTAAATATAAAATATT
1 TATTTTAAATATAAAA-AAT
3789335 TATTTTTAAATTATAAAAAAT
1 TA-TTTTAAA-TATAAAAAAT
*
3789356 TATTATAAAT-TAAA
1 TATTTTAAATATAAA
3789370 TAAAAAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
18 4 0.13
19 1 0.03
20 8 0.26
21 11 0.35
22 7 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TATTTTAAATATAAAAAAT
Found at i:3789358 original size:21 final size:20
Alignment explanation
Indices: 3789315--3789377 Score: 65
Period size: 22 Copynumber: 3.0 Consensus size: 20
3789305 TACTTTTCAC
*
3789315 TATTTTAAA-TATAAAATATT
1 TATTTTAAATTATAAAA-AAT
3789335 TATTTTTAAATTATAAAAAAT
1 TA-TTTTAAATTATAAAAAAT
*
3789356 TATTATAAATTAAATAAAAAAT
1 TATTTTAAATT--ATAAAAAAT
3789378 AAACCAGTTC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
20 10 0.27
21 11 0.30
22 16 0.43
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
TATTTTAAATTATAAAAAAT
Found at i:3789573 original size:22 final size:22
Alignment explanation
Indices: 3789524--3789573 Score: 68
Period size: 24 Copynumber: 2.3 Consensus size: 22
3789514 TTTTAATTTC
3789524 TCTT-AAAAATTAACAATTAAA
1 TCTTAAAAAATTAACAATTAAA
3789545 TCCTTAAAAATATTAACAATTAAA
1 T-CTTAAAAA-ATTAACAATTAAA
3789569 T-TTAA
1 TCTTAA
3789574 TCCTTTTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 1 0.04
22 7 0.27
23 4 0.15
24 14 0.54
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.36
Consensus pattern (22 bp):
TCTTAAAAAATTAACAATTAAA
Found at i:3794934 original size:17 final size:17
Alignment explanation
Indices: 3794901--3794950 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
3794891 TATTATATTA
**
3794901 TTTTA-ATATTTAATAT
1 TTTTATATATTTTTTAT
3794917 TTTTATATATTTTTTAT
1 TTTTATATATTTTTTAT
*
3794934 TTTT-TGAAATTTTTTAT
1 TTTTAT-ATATTTTTTAT
3794951 ATAGTCATCT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
16 6 0.21
17 23 0.79
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (17 bp):
TTTTATATATTTTTTAT
Found at i:3794947 original size:28 final size:27
Alignment explanation
Indices: 3794859--3794953 Score: 75
Period size: 28 Copynumber: 3.3 Consensus size: 27
3794849 TTTAGGCCTG
**
3794859 TTTATATTATTTTTTTATTTTTTAAAAAAT
1 TTTATA-TA-TTTTTTATTTTTT-AAATTT
* * *
3794889 TATATTATATTATTTTAATATTT-AATATT
1 TTTA-TATATT-TTTTATTTTTTAAAT-TT
3794918 TTTATATATTTTTTATTTTTTGAAATTT
1 TTTATATATTTTTTATTTTTT-AAATTT
3794946 TTTATATA
1 TTTATATA
3794954 GTCATCTTAA
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
27 9 0.17
28 18 0.35
29 9 0.17
30 14 0.27
31 2 0.04
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (27 bp):
TTTATATATTTTTTATTTTTTAAATTT
Found at i:3796811 original size:31 final size:31
Alignment explanation
Indices: 3796775--3796834 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
3796765 ATATAAAAAT
* *
3796775 ATATAAA-ATTATTAAATATTAAAATAATATA
1 ATATAAATATT-TAAAATAATAAAATAATATA
3796806 ATATAAATATTTAAAATAATAAAATAATA
1 ATATAAATATTTAAAATAATAAAATAATA
3796835 CGGATGGGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 23 0.88
32 3 0.12
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (31 bp):
ATATAAATATTTAAAATAATAAAATAATATA
Found at i:3796823 original size:23 final size:22
Alignment explanation
Indices: 3796765--3796831 Score: 80
Period size: 23 Copynumber: 2.9 Consensus size: 22
3796755 TAAGATGATT
*
3796765 ATATAAAAATATATAAAATTATTAA
1 ATATTAAAATA-ATAAAA-TA-TAA
*
3796790 ATATTAAAATAATATAATATAA
1 ATATTAAAATAATAAAATATAA
3796812 ATATTTAAAATAATAAAATA
1 ATA-TTAAAATAATAAAATA
3796832 ATACGGATGG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
22 6 0.16
23 17 0.45
24 5 0.13
25 10 0.26
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (22 bp):
ATATTAAAATAATAAAATATAA
Found at i:3796828 original size:8 final size:8
Alignment explanation
Indices: 3796770--3796834 Score: 53
Period size: 8 Copynumber: 8.1 Consensus size: 8
3796760 TGATTATATA
3796770 AAAATATAT
1 AAAATA-AT
*
3796779 AAAATTAT
1 AAAATAAT
* *
3796787 TAAATATT
1 AAAATAAT
3796795 AAAATAAT
1 AAAATAAT
*
3796803 ATAAT-AT
1 AAAATAAT
*
3796810 -AAATATTT
1 AAAATA-AT
3796818 AAAATAAT
1 AAAATAAT
3796826 AAAATAAT
1 AAAATAAT
3796834 A
1 A
3796835 CGGATGGGCC
Statistics
Matches: 43, Mismatches: 10, Indels: 7
0.72 0.17 0.12
Matches are distributed among these distances:
6 3 0.07
7 2 0.05
8 28 0.65
9 10 0.23
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (8 bp):
AAAATAAT
Found at i:3806085 original size:18 final size:18
Alignment explanation
Indices: 3806017--3806088 Score: 63
Period size: 18 Copynumber: 3.9 Consensus size: 18
3806007 TTGTCACTAT
* *
3806017 ATATTTTAAAATTAAAAA
1 ATATATTAAAAATAAAAA
*
3806035 ATATATTAAATATAAAAA
1 ATATATTAAAAATAAAAA
* ***
3806053 ATGTGATTTTTAATAAAAA
1 ATAT-ATTAAAAATAAAAA
*
3806072 TTATATTAAAAATAAAA
1 ATATATTAAAAATAAAA
3806089 TATGAAATTG
Statistics
Matches: 40, Mismatches: 13, Indels: 2
0.73 0.24 0.04
Matches are distributed among these distances:
18 28 0.70
19 12 0.30
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (18 bp):
ATATATTAAAAATAAAAA
Found at i:3808853 original size:29 final size:30
Alignment explanation
Indices: 3808806--3808873 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
3808796 TGGCCCAAGA
* *
3808806 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
3808836 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
3808866 GCAAATAT
1 GTAAATAT
3808874 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:3810944 original size:54 final size:54
Alignment explanation
Indices: 3810862--3811032 Score: 333
Period size: 54 Copynumber: 3.2 Consensus size: 54
3810852 TGAATTATAT
3810862 TGGTAATCCCGACAATACTCTATGAGTTTATATTACAGGGGATTTAGCCTGGAC
1 TGGTAATCCCGACAATACTCTATGAGTTTATATTACAGGGGATTTAGCCTGGAC
3810916 TGGTAATCCCGACAATACTCTATGAGTTTATATTACAGGGGATTTAGCCTGGAC
1 TGGTAATCCCGACAATACTCTATGAGTTTATATTACAGGGGATTTAGCCTGGAC
*
3810970 TGGTAATCCCGACAATACTCTATGAGTTTATATTACAGAGGATTTAGCCTGGAC
1 TGGTAATCCCGACAATACTCTATGAGTTTATATTACAGGGGATTTAGCCTGGAC
3811024 TGGTAATCC
1 TGGTAATCC
3811033 TACTGTAAGG
Statistics
Matches: 116, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
54 116 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.32
Consensus pattern (54 bp):
TGGTAATCCCGACAATACTCTATGAGTTTATATTACAGGGGATTTAGCCTGGAC
Found at i:3811119 original size:46 final size:46
Alignment explanation
Indices: 3811067--3811202 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
3811057 AGTGTGCTCT
3811067 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
3811113 CTGATATGAAATGTGTAAGTCCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * * *
3811159 ATGACA-GAAAATGAGTAAGACCGTAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
3811203 TCATGTCAAA
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 1 0.01
46 79 0.99
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:3823155 original size:43 final size:43
Alignment explanation
Indices: 3823090--3823270 Score: 272
Period size: 43 Copynumber: 4.2 Consensus size: 43
3823080 GGAAAAAAAT
3823090 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
* *
3823133 GCCGGTAAATGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
* *
3823176 ACTGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
* * ****
3823219 GCCGCTAAAGGTCAAGGCTTTTAGCAGCGCTTGCAAAAAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
3823262 GCCGCTAAA
1 GCCGCTAAA
3823271 TTTGGCAGAT
Statistics
Matches: 124, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 124 1.00
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (43 bp):
GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
Found at i:3823357 original size:31 final size:31
Alignment explanation
Indices: 3823322--3823404 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
3823312 CTTCCTGCAT
* *
3823322 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * * *
3823353 TAAAATGCAGCCAAAAACAGCAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
*
3823384 TAAAAAATACAACCAAAAACA
1 T--AAAATCCAACCAAAAACA
3823405 TTAATTCTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 26 0.62
33 16 0.38
ACGTcount: A:0.61, C:0.19, G:0.04, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:3831923 original size:62 final size:61
Alignment explanation
Indices: 3831745--3831924 Score: 326
Period size: 60 Copynumber: 3.0 Consensus size: 61
3831735 ACAAACTAGT
*
3831745 TTTTCCATTTCAAAACAAAAAATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
1 TTTTCCATTTCAGAACAAAAAATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
*
3831806 TTTTCCATTTCAGAAC-AAAAATCCAAACAACAAACATAAAACTGACAAAAAAGAAATGAA
1 TTTTCCATTTCAGAACAAAAAATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
3831866 TTTTCCATTTCAGAACAAAAATATCCAAACAACAGACATAAAACTGACAAAAAAGAAAT
1 TTTTCCATTTCAGAACAAAAA-ATCCAAACAACAGACATAAAACTGACAAAAAAGAAAT
3831925 CAAATTTTGG
Statistics
Matches: 114, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
60 59 0.52
61 19 0.17
62 36 0.32
ACGTcount: A:0.56, C:0.18, G:0.07, T:0.19
Consensus pattern (61 bp):
TTTTCCATTTCAGAACAAAAAATCCAAACAACAGACATAAAACTGACAAAAAAGAAATGAA
Found at i:3832892 original size:38 final size:38
Alignment explanation
Indices: 3832844--3832964 Score: 96
Period size: 38 Copynumber: 3.4 Consensus size: 38
3832834 AATAAGGAAA
*
3832844 TTTTGTGGCGTTTTCAGTAACGCGCCGCTAATAAGATC
1 TTTTGCGGCGTTTTCAGTAACGCGCCGCTAATAAGATC
**** *
3832882 TTTTGCGGCG-TTT-A-T-A-GCAAAACTAAGGAA-A--
1 TTTTGCGGCGTTTTCAGTAACGCGCCGCTAA-TAAGATC
* * *
3832913 ATTTGTGGCGTTTTCAGCAACGCGCCGCTAATAAGATC
1 TTTTGCGGCGTTTTCAGTAACGCGCCGCTAATAAGATC
3832951 TTTTGCGGCGTTTT
1 TTTTGCGGCGTTTT
3832965 TAGCAAAGCG
Statistics
Matches: 58, Mismatches: 16, Indels: 18
0.63 0.17 0.20
Matches are distributed among these distances:
31 8 0.14
32 3 0.05
33 8 0.14
34 3 0.05
35 4 0.07
36 8 0.14
37 3 0.05
38 21 0.36
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (38 bp):
TTTTGCGGCGTTTTCAGTAACGCGCCGCTAATAAGATC
Found at i:3832947 original size:69 final size:69
Alignment explanation
Indices: 3832836--3832971 Score: 245
Period size: 69 Copynumber: 2.0 Consensus size: 69
3832826 CCGTTTCAAA
* *
3832836 TAAGGAAATTTTGTGGCGTTTTCAGTAACGCGCCGCTAATAAGATCTTTTGCGGCGTTTATAGCA
1 TAAGGAAAATTTGTGGCGTTTTCAGCAACGCGCCGCTAATAAGATCTTTTGCGGCGTTTATAGCA
3832901 AAAC
66 AAAC
*
3832905 TAAGGAAAATTTGTGGCGTTTTCAGCAACGCGCCGCTAATAAGATCTTTTGCGGCGTTTTTAGCA
1 TAAGGAAAATTTGTGGCGTTTTCAGCAACGCGCCGCTAATAAGATCTTTTGCGGCGTTTATAGCA
3832970 AA
66 AA
3832972 GCGCCACTAA
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 64 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (69 bp):
TAAGGAAAATTTGTGGCGTTTTCAGCAACGCGCCGCTAATAAGATCTTTTGCGGCGTTTATAGCA
AAAC
Found at i:3834370 original size:26 final size:25
Alignment explanation
Indices: 3834341--3834390 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
3834331 GAATTAATCA
3834341 TAAACCTTCAAATAC-TAGTTAACTCC
1 TAAACCTT-AAA-ACATAGTTAACTCC
*
3834367 TAAACCTTAAACCATAGTTAACTC
1 TAAACCTTAAAACATAGTTAACTC
3834391 ATAATTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 1 0.05
25 13 0.59
26 8 0.36
ACGTcount: A:0.40, C:0.26, G:0.04, T:0.30
Consensus pattern (25 bp):
TAAACCTTAAAACATAGTTAACTCC
Found at i:3834663 original size:41 final size:41
Alignment explanation
Indices: 3834604--3834959 Score: 437
Period size: 41 Copynumber: 8.4 Consensus size: 41
3834594 GGTTATGAGA
*
3834604 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTGATGCTCTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
*
3834645 TGTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
* * *
3834686 TTTTTTTCTCTGGTTTTTAGCGACGTTTTA-GGAAAGCGCCGCTAATGTTCTGG
1 ----------T--TTTT-AGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
*
3834739 TTTTTAGCGGCGTTTTACGAGAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
* * *
3834780 TTTTTTGCGACGTTTTACGAGAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
*
3834821 TTTTTAGCGGCGTTTTACGAAAAGTGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
* * *
3834862 TTTTTAGCTGCGTTTTACGAAAAGTGCCGCTAATGCTCTAGT
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCT-GG
* *
3834904 TTTTTTGCGGCGTTTTAGGAAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
3834945 -TTTTAGCGGCGTTTT
1 TTTTTAGCGGCGTTTT
3834960 TTCTAGAACG
Statistics
Matches: 276, Mismatches: 24, Indels: 31
0.83 0.07 0.09
Matches are distributed among these distances:
40 25 0.09
41 178 0.64
42 36 0.13
43 1 0.00
51 1 0.00
53 24 0.09
54 11 0.04
ACGTcount: A:0.17, C:0.20, G:0.27, T:0.36
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGG
Found at i:3834739 original size:53 final size:54
Alignment explanation
Indices: 3834639--3834743 Score: 167
Period size: 53 Copynumber: 2.0 Consensus size: 54
3834629 GCCGCTGATG
*
3834639 CTCTGGTGTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGGTTTTTTT
1 CTCTGGTGTTTAGCGACGTTTTACGAAAAGCGCCGCTAATGCTCTGGTTTTTTT
* * *
3834693 CTCTGGTTTTTAGCGACGTTTTA-GGAAAGCGCCGCTAATGTTCTGGTTTTT
1 CTCTGGTGTTTAGCGACGTTTTACGAAAAGCGCCGCTAATGCTCTGGTTTTT
3834744 AGCGGCGTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 26 0.55
54 21 0.45
ACGTcount: A:0.15, C:0.19, G:0.26, T:0.40
Consensus pattern (54 bp):
CTCTGGTGTTTAGCGACGTTTTACGAAAAGCGCCGCTAATGCTCTGGTTTTTTT
Found at i:3834990 original size:123 final size:123
Alignment explanation
Indices: 3834693--3834990 Score: 368
Period size: 123 Copynumber: 2.4 Consensus size: 123
3834683 TGGTTTTTTT
* * * * **
3834693 CTCTGGTTTTTAGCGACGTTTTA-GGAAAGCGCCGCTAATGTTCTGGTTTTTAGCGGCGTTTTAC
1 CTCTGGTTTTTAGCGGCGTTTTACGAAAAGCGCCACTAATGCTCTGAATTTTAGCGGCGTTTTAC
* *
3834757 GAGAAGCGCCGCTAATGCTCTGGTTTTTTGCGACGTTTTACGAGAAGCGCCGCTAATG
66 GAAAAGCGCCGCTAATGCTCTGGTTTTTTGCGACGTTTTACGAAAAGCGCCGCTAATG
* * ** *
3834815 CTCTGGTTTTTAGCGGCGTTTTACGAAAAGTGCCGCTAATGCTCTGGTTTTTAGCTGCGTTTTAC
1 CTCTGGTTTTTAGCGGCGTTTTACGAAAAGCGCCACTAATGCTCTGAATTTTAGCGGCGTTTTAC
* * * *
3834880 GAAAAGTGCCGCTAATGCTCTAGTTTTTTTGCGGCGTTTTAGGAAAAGCGCCGCTAATG
66 GAAAAGCGCCGCTAATGCTCT-GGTTTTTTGCGACGTTTTACGAAAAGCGCCGCTAATG
* * * *
3834939 CTCTGG-TTTTAGCGGCGTTTTTTCTAGAA-CGCCACTATTGCTCTGAATTTTA
1 CTCTGGTTTTTAGCGGCG-TTTTACGAAAAGCGCCACTAATGCTCTGAATTTTA
3834991 AAATTTTTGC
Statistics
Matches: 154, Mismatches: 19, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
122 22 0.14
123 85 0.55
124 47 0.31
ACGTcount: A:0.18, C:0.20, G:0.26, T:0.36
Consensus pattern (123 bp):
CTCTGGTTTTTAGCGGCGTTTTACGAAAAGCGCCACTAATGCTCTGAATTTTAGCGGCGTTTTAC
GAAAAGCGCCGCTAATGCTCTGGTTTTTTGCGACGTTTTACGAAAAGCGCCGCTAATG
Found at i:3840521 original size:21 final size:20
Alignment explanation
Indices: 3840495--3840637 Score: 95
Period size: 21 Copynumber: 7.3 Consensus size: 20
3840485 TAACTAAATT
3840495 CATTTTAATAATTATATTTTA
1 CATTTTAATAATTAT-TTTTA
* **
3840516 CATTTT-CT-ATT-TTGATA
1 CATTTTAATAATTATTTTTA
*
3840533 -TTTTTAATAATTATTTTTCA
1 CATTTTAATAATTATTTTT-A
*
3840553 AATTTTAATAATTATATTTTA
1 CATTTTAATAATTAT-TTTTA
* **
3840574 CATTTT-CT-ATT-TTGATA
1 CATTTTAATAATTATTTTTA
*
3840591 -TTTTTAATAATTATTTTTCA
1 CATTTTAATAATTATTTTT-A
*
3840611 AATTTTAATAATTATATTTTA
1 CATTTTAATAATTAT-TTTTA
3840632 CATTTT
1 CATTTT
3840638 CTATTTTGAT
Statistics
Matches: 92, Mismatches: 18, Indels: 24
0.69 0.13 0.18
Matches are distributed among these distances:
16 8 0.09
17 8 0.09
18 8 0.09
19 12 0.13
20 4 0.04
21 44 0.48
22 8 0.09
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.60
Consensus pattern (20 bp):
CATTTTAATAATTATTTTTA
Found at i:3840539 original size:37 final size:38
Alignment explanation
Indices: 3840497--3840668 Score: 117
Period size: 37 Copynumber: 4.5 Consensus size: 38
3840487 ACTAAATTCA
3840497 TTTTAATAATTATATTTT-ACATTTTCTATTTTGATAT
1 TTTTAATAATTATATTTTCACATTTTCTATTTTGATAT
* * *
3840534 TTTTAATAATTAT-TTTTCAAATTTT-AATAATT-ATA-
1 TTTTAATAATTATATTTTCACATTTTCTAT-TTTGATAT
* * * * * ** *
3840569 TTTTACAT-TTTCTATTTTGATATTTTTAATAATTATTTTTCAAA
1 TTTTA-ATAATTATATTTTCACA-TTTT-CT-ATT-TTGAT--AT
3840613 TTTTAATAATTATATTTT-ACATTTTCTATTTTGATAT
1 TTTTAATAATTATATTTTCACATTTTCTATTTTGATAT
3840650 TTTTAATAATTAT-TTTTCA
1 TTTTAATAATTATATTTTCA
3840669 AATTAAAAAT
Statistics
Matches: 103, Mismatches: 17, Indels: 30
0.69 0.11 0.20
Matches are distributed among these distances:
35 8 0.08
36 21 0.20
37 40 0.39
39 3 0.03
40 7 0.07
41 2 0.02
42 4 0.04
43 5 0.05
44 13 0.13
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (38 bp):
TTTTAATAATTATATTTTCACATTTTCTATTTTGATAT
Found at i:3840563 original size:58 final size:58
Alignment explanation
Indices: 3840496--3840672 Score: 354
Period size: 58 Copynumber: 3.1 Consensus size: 58
3840486 AACTAAATTC
3840496 ATTTTAATAATTATATTTTACATTTTCTATTTTGATATTTTTAATAATTATTTTTCAA
1 ATTTTAATAATTATATTTTACATTTTCTATTTTGATATTTTTAATAATTATTTTTCAA
3840554 ATTTTAATAATTATATTTTACATTTTCTATTTTGATATTTTTAATAATTATTTTTCAA
1 ATTTTAATAATTATATTTTACATTTTCTATTTTGATATTTTTAATAATTATTTTTCAA
3840612 ATTTTAATAATTATATTTTACATTTTCTATTTTGATATTTTTAATAATTATTTTTCAA
1 ATTTTAATAATTATATTTTACATTTTCTATTTTGATATTTTTAATAATTATTTTTCAA
3840670 ATT
1 ATT
3840673 AAAAATTTTA
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 119 1.00
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (58 bp):
ATTTTAATAATTATATTTTACATTTTCTATTTTGATATTTTTAATAATTATTTTTCAA
Found at i:3845444 original size:3 final size:3
Alignment explanation
Indices: 3845436--3845469 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
3845426 AAACTTTGAG
3845436 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
3845470 ATGGACGTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:3846771 original size:18 final size:19
Alignment explanation
Indices: 3846732--3846772 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
3846722 TATAATTTGA
* *
3846732 TAAATTAAAAATTTATGAC
1 TAAAATAAAAATTGATGAC
3846751 TAAAATAAAAATTGATG-C
1 TAAAATAAAAATTGATGAC
3846769 TAAA
1 TAAA
3846773 TTAAGTAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (19 bp):
TAAAATAAAAATTGATGAC
Found at i:3848906 original size:19 final size:20
Alignment explanation
Indices: 3848882--3848932 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
3848872 AATTTTTTCA
3848882 CAAGAAAAAAAA-TAAAAAT
1 CAAGAAAAAAAACTAAAAAT
3848901 CAAGAAAAAAAACTAAAAAT
1 CAAGAAAAAAAACTAAAAAT
*
3848921 TAAGAAAAAAAA
1 CAAGAAAAAAAA
3848933 AATTAATTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 12 0.40
20 18 0.60
ACGTcount: A:0.78, C:0.06, G:0.06, T:0.10
Consensus pattern (20 bp):
CAAGAAAAAAAACTAAAAAT
Found at i:3851388 original size:17 final size:16
Alignment explanation
Indices: 3851356--3851391 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
3851346 TAAATAATTT
3851356 AATATAATTATAAATA
1 AATATAATTATAAATA
*
3851372 AATATAATTTTTAAATA
1 AATATAA-TTATAAATA
3851389 AAT
1 AAT
3851392 GTAAATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AATATAATTATAAATA
Found at i:3851565 original size:33 final size:33
Alignment explanation
Indices: 3851500--3851565 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
3851490 TTGATAAATT
*
3851500 GTATTTAAATAATTTAATATAATAATGCATAAA
1 GTATTTAAATAATTTAATATAATAATACATAAA
* * * *
3851533 GTATTTATATAATTTAATTTAATGATATATAAA
1 GTATTTAAATAATTTAATATAATAATACATAAA
3851566 ATATAAATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44
Consensus pattern (33 bp):
GTATTTAAATAATTTAATATAATAATACATAAA
Found at i:3857278 original size:6 final size:6
Alignment explanation
Indices: 3857267--3857293 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
3857257 TATTTCATCC
3857267 CCACCT CCACCT CCACCT CCACCT CCA
1 CCACCT CCACCT CCACCT CCACCT CCA
3857294 AAAGACCAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.67, G:0.00, T:0.15
Consensus pattern (6 bp):
CCACCT
Found at i:3857497 original size:72 final size:72
Alignment explanation
Indices: 3857415--3857668 Score: 357
Period size: 72 Copynumber: 3.5 Consensus size: 72
3857405 ACTTCCACCT
*
3857415 CCAAGAAACTCACCTCTAGTAACATCACCCTCACCTCTAACAACATTTCCACCGATAACGTCACC
1 CCAAGAAACTCACCTCTAGTAACATCACCCTCACCTCTAACAACATTTCCACCGATAACGTCACA
3857480 TTCACAA
66 TTCACAA
* * * * * ** *
3857487 CCAAGAAACTCATTTCTTTTGCT-GCTAACAAACTCACCTCTAACAACATTTCCACCGATAACAT
1 CCAAGAAACTCA--CCTCTAG-TAAC-ATCACCCTCACCTCTAACAACATTTCCACCGATAACGT
3857551 CACATTCACAA
62 CACATTCACAA
* *
3857562 CCAAGAAACTCACCTCTAGTAACATTACCCTCACCTCTAACAACATTTCCATCGATAACGTCACA
1 CCAAGAAACTCACCTCTAGTAACATCACCCTCACCTCTAACAACATTTCCACCGATAACGTCACA
3857627 TTCACAA
66 TTCACAA
*
3857634 CCAAGAAACTCACCTCTAGTAACATTACCCTCACC
1 CCAAGAAACTCACCTCTAGTAACATCACCCTCACC
3857669 ACCACCTTTA
Statistics
Matches: 158, Mismatches: 19, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
72 91 0.58
73 5 0.03
74 5 0.03
75 57 0.36
ACGTcount: A:0.35, C:0.36, G:0.06, T:0.23
Consensus pattern (72 bp):
CCAAGAAACTCACCTCTAGTAACATCACCCTCACCTCTAACAACATTTCCACCGATAACGTCACA
TTCACAA
Found at i:3859976 original size:20 final size:19
Alignment explanation
Indices: 3859951--3859994 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
3859941 GGTTTCTTGG
*
3859951 TTTTTTTTGGGGGTTAGGT
1 TTTTTTTTTGGGGTTAGGT
3859970 TTTTTTTTTGGGGTTAGGT
1 TTTTTTTTTGGGGTTAGGT
3859989 TTTTTT
1 TTTTTT
3859995 GGGAGGGCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.05, C:0.00, G:0.30, T:0.66
Consensus pattern (19 bp):
TTTTTTTTTGGGGTTAGGT
Found at i:3865615 original size:46 final size:44
Alignment explanation
Indices: 3865556--3865670 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
3865546 ACAGGACAGA
* *
3865556 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
3865602 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
3865646 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
3865671 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:3865651 original size:44 final size:45
Alignment explanation
Indices: 3865556--3865689 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
3865546 ACAGGACAGA
* *
3865556 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
3865602 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
3865646 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
3865690 CAGGGTATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:3872989 original size:46 final size:44
Alignment explanation
Indices: 3872930--3873044 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
3872920 ACAGGACAGA
* *
3872930 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
3872976 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
3873020 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
3873045 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:3873025 original size:44 final size:45
Alignment explanation
Indices: 3872930--3873063 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
3872920 ACAGGACAGA
* *
3872930 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
3872976 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
3873020 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
3873064 CAGGGTATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:3877609 original size:3 final size:3
Alignment explanation
Indices: 3877601--3877720 Score: 77
Period size: 3 Copynumber: 40.3 Consensus size: 3
3877591 TGTATTTCAA
* * *
3877601 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAC TAT TCT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
3877649 TAC T-T TAC TAT T-G TAT T-T TAAT GTAC TAT TAA TAT TAC TCT TAT
1 TAT TAT TAT TAT TAT TAT TAT T-AT -TAT TAT TAT TAT TAT TAT TAT
* *
3877693 T-T TCAT TAT TAT TAT TAC TAC TAT TAT T
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT T
3877721 CTTTGTTGTC
Statistics
Matches: 88, Mismatches: 22, Indels: 14
0.71 0.18 0.11
Matches are distributed among these distances:
2 6 0.07
3 77 0.88
4 4 0.05
5 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:3877618 original size:12 final size:12
Alignment explanation
Indices: 3877604--3877720 Score: 89
Period size: 12 Copynumber: 9.8 Consensus size: 12
3877594 ATTTCAATAT
*
3877604 TATTATTATTAT
1 TATTATTATTAC
*
3877616 TATTATTATTAT
1 TATTATTATTAC
*
3877628 TATTATTATCAC
1 TATTATTATTAC
*
3877640 TATTCTTATTAC
1 TATTATTATTAC
* *
3877652 T-TTACTATT-G
1 TATTATTATTAC
3877662 TATT-TTAATGTAC
1 TATTATT-AT-TAC
*
3877675 TATTAATATTAC
1 TATTATTATTAC
* *
3877687 TCTTATT-TTCAT
1 TATTATTATT-AC
3877699 TATTATTATTAC
1 TATTATTATTAC
*
3877711 TACTATTATT
1 TATTATTATT
3877721 CTTTGTTGTC
Statistics
Matches: 82, Mismatches: 16, Indels: 14
0.73 0.14 0.12
Matches are distributed among these distances:
10 2 0.02
11 12 0.15
12 59 0.72
13 8 0.10
14 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.59
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:3878049 original size:3 final size:3
Alignment explanation
Indices: 3878041--3878093 Score: 52
Period size: 3 Copynumber: 16.7 Consensus size: 3
3878031 GTTATTAACA
* * *
3878041 TAT TAT TAT TAAT GTAG TAT TAT TAC TATT TAT TAT TAT TAT TAT TAA
1 TAT TAT TAT T-AT -TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
3878089 TAT TA
1 TAT TA
3878094 GTGTATGTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
3 35 0.85
4 5 0.12
5 1 0.02
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:3880385 original size:21 final size:21
Alignment explanation
Indices: 3880348--3880387 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
3880338 TGTATATTAG
*
3880348 GCTTTCTTGAAAGTAAAGTTC
1 GCTTTCTGGAAAGTAAAGTTC
3880369 GCTTTCTGGCAAA-TAAAGT
1 GCTTTCTGG-AAAGTAAAGT
3880388 GATCTAAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (21 bp):
GCTTTCTGGAAAGTAAAGTTC
Found at i:3891370 original size:17 final size:17
Alignment explanation
Indices: 3891348--3891383 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
3891338 TTCACTCAAA
3891348 TTCTTTTTCTTTTTT-TT
1 TTCTTTTT-TTTTTTGTT
3891365 TTCTTTTTTTTTTTGTT
1 TTCTTTTTTTTTTTGTT
3891382 TT
1 TT
3891384 AACTACAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (17 bp):
TTCTTTTTTTTTTTGTT
Found at i:3891372 original size:12 final size:12
Alignment explanation
Indices: 3891351--3891383 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
3891341 ACTCAAATTC
3891351 TTTTTC-TTTTT
1 TTTTTCTTTTTT
3891362 TTTTTCTTTTTT
1 TTTTTCTTTTTT
*
3891374 TTTTTGTTTT
1 TTTTTCTTTT
3891384 AACTACAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.00, C:0.06, G:0.03, T:0.91
Consensus pattern (12 bp):
TTTTTCTTTTTT
Found at i:3891383 original size:11 final size:11
Alignment explanation
Indices: 3891351--3891377 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
3891341 ACTCAAATTC
3891351 TTTTTCTTTTT
1 TTTTTCTTTTT
3891362 TTTTTCTTTTT
1 TTTTTCTTTTT
3891373 TTTTT
1 TTTTT
3891378 TGTTTTAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:3895335 original size:16 final size:16
Alignment explanation
Indices: 3895297--3895335 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
3895287 AAAATAATTT
3895297 TTAAAAATTTAAAATA
1 TTAAAAATTTAAAATA
*
3895313 TTTAAAATTATAAAA-A
1 TTAAAAATT-TAAAATA
3895329 TTAAAAA
1 TTAAAAA
3895336 AATCTAATGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
TTAAAAATTTAAAATA
Found at i:3904374 original size:25 final size:24
Alignment explanation
Indices: 3904334--3904380 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
3904324 TAAATCGCTT
*
3904334 ACATTTTTATTTTTATTTATTTGC
1 ACATTTTTATTATTATTTATTTGC
3904358 ACATTTATTATTATTATTTATTT
1 ACATTT-TTATTATTATTTATTT
3904381 ATTATCCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.66
Consensus pattern (24 bp):
ACATTTTTATTATTATTTATTTGC
Found at i:3904600 original size:13 final size:13
Alignment explanation
Indices: 3904584--3904608 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3904574 TTTTCCTTAA
3904584 TATTTATTTATTG
1 TATTTATTTATTG
3904597 TATTTATTTATT
1 TATTTATTTATT
3904609 TATCCCTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (13 bp):
TATTTATTTATTG
Found at i:3914736 original size:25 final size:25
Alignment explanation
Indices: 3914708--3914755 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
3914698 AATGATTTAA
3914708 AAAAAT-TTAAAAATATAAAAATTCT
1 AAAAATGTTAAAAA-ATAAAAATTCT
**
3914733 AAAAATGTTCTAAAATAAAAATT
1 AAAAATGTTAAAAAATAAAAATT
3914756 ATCAGAAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 15 0.75
26 5 0.25
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.31
Consensus pattern (25 bp):
AAAAATGTTAAAAAATAAAAATTCT
Found at i:3915582 original size:35 final size:37
Alignment explanation
Indices: 3915511--3915582 Score: 85
Period size: 37 Copynumber: 2.0 Consensus size: 37
3915501 GAAATACATA
** *
3915511 TTTAAAAAAAACTCAAAAAATAATATTATATTTAATT
1 TTTAAAAAAAACTCAAAAAATAATAAAATATATAATT
* *
3915548 TTTAAAAAAATCT-TAAAAATAA-AAAATATATAATT
1 TTTAAAAAAAACTCAAAAAATAATAAAATATATAATT
3915583 CTTTCAAACT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
35 10 0.33
36 8 0.27
37 12 0.40
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (37 bp):
TTTAAAAAAAACTCAAAAAATAATAAAATATATAATT
Found at i:3916438 original size:18 final size:19
Alignment explanation
Indices: 3916398--3916442 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
3916388 TAAAAACAAA
*
3916398 TTTATAGAAATAAAATGTT
1 TTTATAAAAATAAAATGTT
*
3916417 TTTATAAAAATAATAT-TT
1 TTTATAAAAATAAAATGTT
3916435 TTTATAAA
1 TTTATAAA
3916443 TTTATAAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 10 0.42
19 14 0.58
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (19 bp):
TTTATAAAAATAAAATGTT
Found at i:3921500 original size:15 final size:17
Alignment explanation
Indices: 3921480--3921520 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 17
3921470 CAATAATTAC
3921480 TTAATTTACTTGA-GA-
1 TTAATTTACTTGATGAG
*
3921495 TTAA-TTAGTTGATGAG
1 TTAATTTACTTGATGAG
3921511 TTAATTTACT
1 TTAATTTACT
3921521 AGAATGATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
14 7 0.33
15 6 0.29
16 4 0.19
17 4 0.19
ACGTcount: A:0.32, C:0.05, G:0.15, T:0.49
Consensus pattern (17 bp):
TTAATTTACTTGATGAG
Found at i:3926246 original size:10 final size:10
Alignment explanation
Indices: 3926231--3926258 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
3926221 TATTTCAGAC
3926231 TTAAAATTTT
1 TTAAAATTTT
3926241 TTAAAATTTT
1 TTAAAATTTT
3926251 TTAAAATT
1 TTAAAATT
3926259 AATTCTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (10 bp):
TTAAAATTTT
Found at i:3926800 original size:17 final size:17
Alignment explanation
Indices: 3926778--3926811 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
3926768 AATAAAATTA
3926778 TATTTTATT-TATATATT
1 TATTTT-TTATATATATT
3926795 TATTTTTTATATATATT
1 TATTTTTTATATATATT
3926812 CTAAAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TATTTTTTATATATATT
Found at i:3937307 original size:297 final size:297
Alignment explanation
Indices: 3936773--3937368 Score: 1183
Period size: 297 Copynumber: 2.0 Consensus size: 297
3936763 GATGAAGATG
3936773 TTTAAAAACATTTATTTATTATTTTATATTTTTAATTTTTATTAAAACTACTTTTTATTTTTATT
1 TTTAAAAACATTTATTTATTATTTTATATTTTTAATTTTTATTAAAACTACTTTTTATTTTTATT
3936838 AGATTTTAAAAATTTTATTTTTAATTATTAAGTTCGGTTATTTCTTATTGAGTAATTATTCTTCC
66 AGATTTTAAAAATTTTATTTTTAATTATTAAGTTCGGTTATTTCTTATTGAGTAATTATTCTTCC
3936903 CAATATCCCCTAAAAAGTTCCTGATTTTATCACAGTTATATAGAGCTCTTAAGCTCATCATCACA
131 CAATATCCCCTAAAAAGTTCCTGATTTTATCACAGTTATATAGAGCTCTTAAGCTCATCATCACA
3936968 TAGGAACTAAAACTCCATCGGAAAAGGTTCTCCACGACTGCCATATCCTGCTCGCCCACGACCAT
196 TAGGAACTAAAACTCCATCGGAAAAGGTTCTCCACGACTGCCATATCCTGCTCGCCCACGACCAT
3937033 AGCTAGCACTAGAGATAATATTATTTTGGTGCAGGAC
261 AGCTAGCACTAGAGATAATATTATTTTGGTGCAGGAC
*
3937070 TTTAAAAACATTTATTTATTATTTTATGTTTTTAATTTTTATTAAAACTACTTTTTATTTTTATT
1 TTTAAAAACATTTATTTATTATTTTATATTTTTAATTTTTATTAAAACTACTTTTTATTTTTATT
3937135 AGATTTTAAAAATTTTATTTTTAATTATTAAGTTCGGTTATTTCTTATTGAGTAATTATTCTTCC
66 AGATTTTAAAAATTTTATTTTTAATTATTAAGTTCGGTTATTTCTTATTGAGTAATTATTCTTCC
3937200 CAATATCCCCTAAAAAGTTCCTGATTTTATCACAGTTATATAGAGCTCTTAAGCTCATCATCACA
131 CAATATCCCCTAAAAAGTTCCTGATTTTATCACAGTTATATAGAGCTCTTAAGCTCATCATCACA
3937265 TAGGAACTAAAACTCCATCGGAAAAGGTTCTCCACGACTGCCATATCCTGCTCGCCCACGACCAT
196 TAGGAACTAAAACTCCATCGGAAAAGGTTCTCCACGACTGCCATATCCTGCTCGCCCACGACCAT
3937330 AGCTAGCACTAGAGATAATATTATTTTGGTGCAGGAC
261 AGCTAGCACTAGAGATAATATTATTTTGGTGCAGGAC
3937367 TT
1 TT
3937369 ATGGCCTAAT
Statistics
Matches: 298, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
297 298 1.00
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (297 bp):
TTTAAAAACATTTATTTATTATTTTATATTTTTAATTTTTATTAAAACTACTTTTTATTTTTATT
AGATTTTAAAAATTTTATTTTTAATTATTAAGTTCGGTTATTTCTTATTGAGTAATTATTCTTCC
CAATATCCCCTAAAAAGTTCCTGATTTTATCACAGTTATATAGAGCTCTTAAGCTCATCATCACA
TAGGAACTAAAACTCCATCGGAAAAGGTTCTCCACGACTGCCATATCCTGCTCGCCCACGACCAT
AGCTAGCACTAGAGATAATATTATTTTGGTGCAGGAC
Done.