Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 111 of 167
Found at i:37124841 original size:48 final size:47
Alignment explanation
Indices: 37124751--37125252 Score: 300
Period size: 48 Copynumber: 10.6 Consensus size: 47
37124741 TTTGTGTGCT
* * *
37124751 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-TACGA-AATGAGAGCC
* * *
37124797 AGTGTAAGACCATGTCTGGGATATGGCATCAGTATTGAAATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGTA-CGAAATGAGAGCC
* * *
37124845 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCTACGAGAT--GTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-TACGAAATGAGAGCC
** * * * * *
37124889 AGTGTAAGACCATGTCTAAGACATGGCATCGGCACG-TATAGAGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGTACGAAAT-GA-GAGCC
* * *
37124937 AGTGTAAGACCATGTCTGGGATATGGCATCAGTATTGAAATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGTA-CGAAATGAGAGCC
* * *
37124985 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCTACGAGAT--GTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-TACGAAATGAGAGCC
** * * * * *
37125029 AGTGTAAGACCATGTCTAAGACATGGCATCGGCACG-TATAGAGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGTACGAAAT-GA-GAGCC
* * * * *
37125077 AGTGTAAGACCATGTCTGGGATATGGCATCGGCACGGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGTAC-GA-A-ATGAGAGCC
** * * * *
37125127 AGTGTAAGACCATGTCTGGGACATGGTGTCA--ACCTCAATTTTGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGTA-C-GAA--ATGAGAGCC
* * ***
37125176 AGTGTAAGACCATGTTTGGGACATAGCATC-G-ACTTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGTACGAAAT-GA-GAGCC
*
37125223 AGTGTAAGACCATGTCTAGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
37125253 GGCATTATAC
Statistics
Matches: 358, Mismatches: 69, Indels: 57
0.74 0.14 0.12
Matches are distributed among these distances:
44 26 0.07
45 31 0.09
46 45 0.13
47 74 0.21
48 108 0.30
49 40 0.11
50 31 0.09
51 2 0.01
52 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGTACGAAATGAGAGCC
Found at i:37124941 original size:92 final size:93
Alignment explanation
Indices: 37124796--37125252 Score: 317
Period size: 92 Copynumber: 4.8 Consensus size: 93
37124786 TTATGAGAGC
* * * * * *
37124796 CAGTGTAAGACCATGTCTGGGATATGGCATCAGTATTGAAATGA-GAG-CTAGTGTAAGA-CATG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CGATA-GAGGTGTC-AGTGTAAGACCATG
37124858 TCTGGGACAT-GCATCAGCTACGAGATGTGT
63 TCTGGGACATGGCATCAGCTACGAGATGTGT
**
37124888 CAGTGTAAGACCATGTCTAAGACATGGCATCGGCACGTATAGAGGTGTCAGTGTAAGACCATGTC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACG-ATAGAGGTGTCAGTGTAAGACCATGTC
* * * * *
37124953 TGGGATATGGCATCAG-TATTGAAATGAGAG
65 TGGGACATGGCATCAGCTA-CGAGATGTG-T
* *
37124983 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCTACG--AGATGTGTCAGTGTAAGACCATGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGATAGAGGTGTCAGTGTAAGACCATGT
** * *
37125044 CTAAGACATGGCATCGGC-ACGTATAGAGGTGT
64 CTGGGACATGGCATCAGCTACG---AGATGTGT
* * *
37125076 CAGTGTAAGACCATGTCTGGGATATGGCATCGGCACGGATATGTGAGAG-CTAGTGTAAGACCAT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GATA-GAG-GTGTC-AGTGTAAGACCAT
** * * **
37125140 GTCTGGGACATGGTGTCAACCT-CAATTTTGATAGT
62 GTCTGGGACATGGCATC-AGCTACGA-GATG-T-GT
* * * ** * * * *
37125175 CAGTGTAAGACCATGTTTGGGACATAGCATCGACTTGATGGATGAGCCAGTGTAAGACCATGTCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATAGAGGTGTCAGTGTAAGACCATGTCT
*
37125240 AGGACATGGCATC
66 GGGACATGGCATC
37125253 GGCATTATAC
Statistics
Matches: 285, Mismatches: 53, Indels: 50
0.73 0.14 0.13
Matches are distributed among these distances:
91 4 0.01
92 89 0.31
93 32 0.11
94 32 0.11
95 16 0.06
96 41 0.14
97 5 0.02
98 32 0.11
99 34 0.12
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.25
Consensus pattern (93 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATAGAGGTGTCAGTGTAAGACCATGTCT
GGGACATGGCATCAGCTACGAGATGTGT
Found at i:37124948 original size:140 final size:140
Alignment explanation
Indices: 37124796--37125151 Score: 640
Period size: 140 Copynumber: 2.5 Consensus size: 140
37124786 TTATGAGAGC
37124796 CAGTGTAAGACCATGTCTGGGATATGGCATCAGTATTGAAATGAGAGCTAGTGTAAGACATGTCT
1 CAGTGTAAGACCATGTCTGGGATATGGCATCAGTATTGAAATGAGAGCTAGTGTAAGACATGTCT
37124861 GGGACATGCATCAGCTACGAGATGTGTCAGTGTAAGACCATGTCTAAGACATGGCATCGGCACGT
66 GGGACATGCATCAGCTACGAGATGTGTCAGTGTAAGACCATGTCTAAGACATGGCATCGGCACGT
37124926 ATAGAGGTGT
131 ATAGAGGTGT
37124936 CAGTGTAAGACCATGTCTGGGATATGGCATCAGTATTGAAATGAGAGCTAGTGTAAGACATGTCT
1 CAGTGTAAGACCATGTCTGGGATATGGCATCAGTATTGAAATGAGAGCTAGTGTAAGACATGTCT
37125001 GGGACATGCATCAGCTACGAGATGTGTCAGTGTAAGACCATGTCTAAGACATGGCATCGGCACGT
66 GGGACATGCATCAGCTACGAGATGTGTCAGTGTAAGACCATGTCTAAGACATGGCATCGGCACGT
37125066 ATAGAGGTGT
131 ATAGAGGTGT
* * ** *
37125076 CAGTGTAAGACCATGTCTGGGATATGGCATCGGCACGGATATGTGAGAGCTAGTGTAAGACCATG
1 CAGTGTAAGACCATGTCTGGGATATGGCATCAGTATTGA-A-ATGAGAGCTAGTGTAAGA-CATG
37125141 TCTGGGACATG
63 TCTGGGACATG
37125152 GTGTCAACCT
Statistics
Matches: 208, Mismatches: 5, Indels: 3
0.96 0.02 0.01
Matches are distributed among these distances:
140 175 0.84
141 1 0.00
142 17 0.08
143 15 0.07
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.25
Consensus pattern (140 bp):
CAGTGTAAGACCATGTCTGGGATATGGCATCAGTATTGAAATGAGAGCTAGTGTAAGACATGTCT
GGGACATGCATCAGCTACGAGATGTGTCAGTGTAAGACCATGTCTAAGACATGGCATCGGCACGT
ATAGAGGTGT
Found at i:37130859 original size:275 final size:275
Alignment explanation
Indices: 37130368--37130933 Score: 1105
Period size: 275 Copynumber: 2.1 Consensus size: 275
37130358 TTACAAGTCA
37130368 TCAATTAGGCAAGTTAATCTATACATGCCATTATACCAAAATAAGTTTACTATTTATACCAAAAC
1 TCAATTAGGCAAGTTAATCTATACATGCCATTATACCAAAATAAGTTTACTATTTATACCAAAAC
37130433 GAGCTGGTGGATAGTGTGATGATGCTCCGACTGATCTCCAACCTTTGCGAGCTTTCGAGCACTAT
66 GAGCTGGTGGATAGTGTGATGATGCTCCGACTGATCTCCAACCTTTGCGAGCTTTCGAGCACTAT
37130498 AAACCAGAGAAAAAGAAAACCTAGCAAGTAGTTAATGCTTAGTAAGTTCATATAGCAGGAATTAA
131 AAACCAGAGAAAAAGAAAACCTAGCAAGTAGTTAATGCTTAGTAAGTTCATATAGCAGGAATTAA
37130563 ACTTACCAATAACATTCATTAAAATAAGTATTCAATAACATGCTTCCTAACAAATTAGCAATTTG
196 ACTTACCAATAACATTCATTAAAATAAGTATTCAATAACATGCTTCCTAACAAATTAGCAATTTG
37130628 CCTAATCACATACAC
261 CCTAATCACATACAC
37130643 TCAATTAGGCAAGTTAATCTATACATGCCATTATACCAAAATAAGTTTACTATTTATACCAAAAC
1 TCAATTAGGCAAGTTAATCTATACATGCCATTATACCAAAATAAGTTTACTATTTATACCAAAAC
37130708 GAGCTGGTGGATAGTGTGATGATGCTCCGACTGATCTCCAACCTTTGCGAGCTTTCGAGCACTAT
66 GAGCTGGTGGATAGTGTGATGATGCTCCGACTGATCTCCAACCTTTGCGAGCTTTCGAGCACTAT
*
37130773 AAACCAGAGAAAGAGAAAACCTAGCAAGTAGTTAATGCTTAGTAAGTTCATATAGCAGGAATTAA
131 AAACCAGAGAAAAAGAAAACCTAGCAAGTAGTTAATGCTTAGTAAGTTCATATAGCAGGAATTAA
*
37130838 ACTTACCAATAACATTCATTAAAATAAGTATTCAATAACATGCTTCCTAACAAATTGGCAATTTG
196 ACTTACCAATAACATTCATTAAAATAAGTATTCAATAACATGCTTCCTAACAAATTAGCAATTTG
37130903 CCTAATCACATACAC
261 CCTAATCACATACAC
*
37130918 TCAATTAAGCAAGTTA
1 TCAATTAGGCAAGTTA
37130934 GCAAGTTAGT
Statistics
Matches: 288, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
275 288 1.00
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.28
Consensus pattern (275 bp):
TCAATTAGGCAAGTTAATCTATACATGCCATTATACCAAAATAAGTTTACTATTTATACCAAAAC
GAGCTGGTGGATAGTGTGATGATGCTCCGACTGATCTCCAACCTTTGCGAGCTTTCGAGCACTAT
AAACCAGAGAAAAAGAAAACCTAGCAAGTAGTTAATGCTTAGTAAGTTCATATAGCAGGAATTAA
ACTTACCAATAACATTCATTAAAATAAGTATTCAATAACATGCTTCCTAACAAATTAGCAATTTG
CCTAATCACATACAC
Found at i:37143402 original size:39 final size:39
Alignment explanation
Indices: 37143339--37143417 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
37143329 AGTAATTGAA
*
37143339 TAGCCGTTGTAATCGTTCGCCAACGTTCAAGGTAAGTTC
1 TAGCCGTTGTAATCATTCGCCAACGTTCAAGGTAAGTTC
* * *
37143378 TAGCTGTTGTAATCATTTGGCAACGTTCAAGGTAAGTTC
1 TAGCCGTTGTAATCATTCGCCAACGTTCAAGGTAAGTTC
37143417 T
1 T
37143418 TAAGTGTTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (39 bp):
TAGCCGTTGTAATCATTCGCCAACGTTCAAGGTAAGTTC
Found at i:37144699 original size:43 final size:44
Alignment explanation
Indices: 37144628--37144762 Score: 166
Period size: 43 Copynumber: 3.1 Consensus size: 44
37144618 TATCGAAATG
* *
37144628 TGATATTCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * * *
37144672 TGATA-TCGGGCTTTGAGCTTAGTAGGCTATGATGTCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
37144715 T-ATTATTTGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGA-TATTCG-GGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
37144760 TGA
1 TGA
37144763 AATGTTATGT
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
42 1 0.01
43 35 0.47
44 7 0.09
45 31 0.41
46 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (44 bp):
TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:37144744 original size:45 final size:43
Alignment explanation
Indices: 37144645--37144762 Score: 148
Period size: 45 Copynumber: 2.7 Consensus size: 43
37144635 CGGGCTTCGG
*
37144645 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGA
* * * * *
37144688 GCTTAGTAGGCTATGATGTCGGTGAAAT-ATTATTTGAGCCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TCG-GCCTTTGA
37144733 GCCTAGCAGGCTATAATGCCGGTGAAATGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGA
37144763 AATGTTATGT
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 1 0.02
43 26 0.43
44 2 0.03
45 31 0.51
46 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (43 bp):
GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGA
Found at i:37145075 original size:38 final size:38
Alignment explanation
Indices: 37145032--37145267 Score: 289
Period size: 38 Copynumber: 6.2 Consensus size: 38
37145022 ATGATATTTG
* **
37145032 TATCCGGCTTAAAGACCGCAGGCTAT-ATGCTGG-AATTA
1 TATCCGGGTTAAATCCCGCAGGCT-TCATGCTGGTAA-TA
*
37145070 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
*
37145108 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
*
37145146 TATCCGGGTTAAATCCTGCAGGCTTCATGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
* * * * * *
37145184 TATCAGGGTTAATTCCCACAGTCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
* *
37145222 TATCCGGGTTAAATCCCGCAGGCCT-AGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCA-TGCTGGTAATA
*
37145260 TATTCGGG
1 TATCCGGG
37145268 CCTTTGAGCC
Statistics
Matches: 175, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
37 1 0.01
38 172 0.98
39 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
Found at i:37145232 original size:114 final size:114
Alignment explanation
Indices: 37145032--37145267 Score: 325
Period size: 114 Copynumber: 2.1 Consensus size: 114
37145022 ATGATATTTG
* * *
37145032 TATCCGGCTTAAAGACCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
1 TATCCGGGTTAAAGACCGCAGGCTATATGCTGGAATTATATCAGGGTTAAATCCCACAGGCTTCG
* *
37145097 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
66 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAATA
* * *
37145146 TATCCGGGTTAAA-TCCTGCAGGCT-TCATGCTGGTAA-TATATCAGGGTTAATTCCCACAGTCT
1 TATCCGGGTTAAAGACC-GCAGGCTAT-ATGCTGG-AATTATATCAGGGTTAAATCCCACAGGCT
* *
37145208 TCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTA
63 TCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAATA
*
37145260 TATTCGGG
1 TATCCGGG
37145268 CCTTTGAGCC
Statistics
Matches: 108, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
113 3 0.03
114 103 0.95
115 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (114 bp):
TATCCGGGTTAAAGACCGCAGGCTATATGCTGGAATTATATCAGGGTTAAATCCCACAGGCTTCG
TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAATA
Found at i:37145382 original size:45 final size:45
Alignment explanation
Indices: 37145260--37145385 Score: 182
Period size: 45 Copynumber: 2.8 Consensus size: 45
37145250 GCTGGTATTA
* * *
37145260 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATACTGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* *
37145305 TATTCGGGCCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
*
37145350 TATTCGGG-CTTTCGAGTCTAGCAGGCTATAATGCCG
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCG
37145386 ATGAAATGAT
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
44 4 0.05
45 69 0.95
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.29
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
Found at i:37150073 original size:36 final size:36
Alignment explanation
Indices: 37150026--37150097 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
37150016 AAACTCAAAA
37150026 AATGAAATTCACGCAATTTAATCCTTATTTCAAGCC
1 AATGAAATTCACGCAATTTAATCCTTATTTCAAGCC
37150062 AATGAAATTCACGCAATTTAATCCTTATTTCAAGCC
1 AATGAAATTCACGCAATTTAATCCTTATTTCAAGCC
37150098 TAACTGAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.33
Consensus pattern (36 bp):
AATGAAATTCACGCAATTTAATCCTTATTTCAAGCC
Found at i:37154265 original size:18 final size:18
Alignment explanation
Indices: 37154233--37154278 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
37154223 GAACTGACTT
* *
37154233 TAAAA-AAAATCAAATCC
1 TAAAATAAAATAAAATAC
37154250 TAAAATAAAATAAAATAC
1 TAAAATAAAATAAAATAC
*
37154268 TAAAATCAAAT
1 TAAAATAAAAT
37154279 TCTAACCCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 5 0.20
18 20 0.80
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (18 bp):
TAAAATAAAATAAAATAC
Found at i:37158028 original size:13 final size:13
Alignment explanation
Indices: 37158010--37158038 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
37158000 CCAATGCATC
37158010 TAACACTTGTTAT
1 TAACACTTGTTAT
37158023 TAACACTTGTTAT
1 TAACACTTGTTAT
37158036 TAA
1 TAA
37158039 GTTAGATTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (13 bp):
TAACACTTGTTAT
Found at i:37159970 original size:19 final size:18
Alignment explanation
Indices: 37159946--37159982 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
37159936 CTCTTCCATC
37159946 TCTTTTCTCTGTTTTCTTT
1 TCTTTTCT-TGTTTTCTTT
*
37159965 TCTTTTCTTTTTTTCTTT
1 TCTTTTCTTGTTTTCTTT
37159983 CTCCTCCTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.78
Consensus pattern (18 bp):
TCTTTTCTTGTTTTCTTT
Found at i:37165107 original size:25 final size:25
Alignment explanation
Indices: 37165072--37165153 Score: 101
Period size: 25 Copynumber: 3.3 Consensus size: 25
37165062 TTACCGACTC
*
37165072 CAGCTCTTATGAGCTTACCGATACT
1 CAGCTCGTATGAGCTTACCGATACT
*
37165097 CAGCTCGTATGAGCTTATCGATACT
1 CAGCTCGTATGAGCTTACCGATACT
* * * * *
37165122 TAGCTTGTATGAGCTTAGCGTTATT
1 CAGCTCGTATGAGCTTACCGATACT
37165147 CAGCTCG
1 CAGCTCG
37165154 GAAGAGNTTA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACCGATACT
Found at i:37179596 original size:56 final size:55
Alignment explanation
Indices: 37179500--37179703 Score: 254
Period size: 56 Copynumber: 3.7 Consensus size: 55
37179490 CCCAGACAGG
** * *
37179500 GTCTTACTCGCACACATATATCGGAGTCATGTATCGATGCCAACGTATAAAACGTT
1 GTCTTACTCGCACACATATATCGGAGTCACATATCAATGCCAACATATAAAACG-T
* *
37179556 GTCTTACTCGCACACATATATCAGAGTCACATATCAATGCCAACATATAAAACAT
1 GTCTTACTCGCACACATATATCGGAGTCACATATCAATGCCAACATATAAAACGT
* * *
37179611 GATCTTACTTGCACACATATATCGGAGTCACATATCGATTCCAACATATAAAACGT
1 G-TCTTACTCGCACACATATATCGGAGTCACATATCAATGCCAACATATAAAACGT
* * *
37179667 G--GT-CTCGCACACATATAGCGGAAT-ACATATCAATGCC
1 GTCTTACTCGCACACATATATCGGAGTCACATATCAATGCC
37179704 TCATATACAT
Statistics
Matches: 130, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
51 11 0.08
52 18 0.14
53 1 0.01
55 2 0.02
56 98 0.75
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (55 bp):
GTCTTACTCGCACACATATATCGGAGTCACATATCAATGCCAACATATAAAACGT
Found at i:37182574 original size:14 final size:14
Alignment explanation
Indices: 37182549--37182591 Score: 52
Period size: 15 Copynumber: 3.0 Consensus size: 14
37182539 CTTTTTTTTC
37182549 ATTTTCTCTTCTTCT
1 ATTTT-TCTTCTTCT
37182564 ATTTTTCTTCTTCTT
1 ATTTTTCTTCTTC-T
*
37182579 GTTTTTCTT-TTCT
1 ATTTTTCTTCTTCT
37182592 CCTCTATAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
13 1 0.04
14 11 0.42
15 14 0.54
ACGTcount: A:0.05, C:0.21, G:0.02, T:0.72
Consensus pattern (14 bp):
ATTTTTCTTCTTCT
Found at i:37184033 original size:20 final size:21
Alignment explanation
Indices: 37183990--37184035 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
37183980 ACTATTTTGT
37183990 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
37184010 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
37184029 TATGGGC
1 TATGGGC
37184036 AAGGCCCAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:37184104 original size:60 final size:59
Alignment explanation
Indices: 37184028--37184175 Score: 169
Period size: 60 Copynumber: 2.5 Consensus size: 59
37184018 AACTGTGTTA
* *
37184028 ATATGGGCAAGGCCCAGTATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAGTATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTAATACTG
* * *
37184088 ATATGGGCTAGGCCCAGTATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAGTATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATACTG
37184148 ATATGGGCTAAGG-CCAGT-TAACTCTGAT
1 ATATGGGCT-AGGCCCAGTAT-ACTCTGAT
37184176 TTCTGAATAG
Statistics
Matches: 78, Mismatches: 5, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
59 2 0.03
60 65 0.83
61 11 0.14
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAGTATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATACTG
Found at i:37186525 original size:34 final size:34
Alignment explanation
Indices: 37186481--37186572 Score: 94
Period size: 34 Copynumber: 2.6 Consensus size: 34
37186471 TTTGCATACT
* *
37186481 ATACTGAAATGGGCTAAGGCCCAGACTGCCACTG
1 ATACTAAAATGGGCTAAGGCCCAAACTGCCACTG
* * **
37186515 ATACTAAAATGGGCTCAGACCCAAACTGTTACTG
1 ATACTAAAATGGGCTAAGGCCCAAACTGCCACTG
* *
37186549 CTACTGAAAGAGGGGCTAAGGCCC
1 ATACT-AAA-ATGGGCTAAGGCCC
37186573 CTAACTGAAA
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
34 32 0.70
35 3 0.07
36 11 0.24
ACGTcount: A:0.32, C:0.25, G:0.25, T:0.18
Consensus pattern (34 bp):
ATACTAAAATGGGCTAAGGCCCAAACTGCCACTG
Found at i:37187207 original size:42 final size:41
Alignment explanation
Indices: 37187142--37187227 Score: 111
Period size: 42 Copynumber: 2.1 Consensus size: 41
37187132 TTACATGAGT
* *
37187142 TTTCATTCAGCTCTTTTGAGCTTCTGTTTAACCCTGATGGG
1 TTTCATTCAGCTCTTTTGAGCTTCCGTTCAACCCTGATGGG
* *
37187183 TTTCTATTCAGCT-TTTATGTGCTTCCGTTCAACCCTTATGGG
1 TTTC-ATTCAGCTCTTT-TGAGCTTCCGTTCAACCCTGATGGG
37187225 TTT
1 TTT
37187228 TTGTTTAGCA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
41 7 0.18
42 32 0.82
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.47
Consensus pattern (41 bp):
TTTCATTCAGCTCTTTTGAGCTTCCGTTCAACCCTGATGGG
Found at i:37187243 original size:42 final size:42
Alignment explanation
Indices: 37187142--37187243 Score: 98
Period size: 42 Copynumber: 2.5 Consensus size: 42
37187132 TTACATGAGT
* * * * *
37187142 TTTC-ATTCAGCTCTTTTGAGCTTCTGTTTAACCCTGATGGG
1 TTTCTATTCAGCACTTATGTGCTTCCGTTCAACCCTGATGGG
** *
37187183 TTTCTATTCAGCTTTTATGTGCTTCCGTTCAACCCTTATGGG
1 TTTCTATTCAGCACTTATGTGCTTCCGTTCAACCCTGATGGG
* * *
37187225 TTTTTGTTTAGCACTTATG
1 TTTCTATTCAGCACTTATG
37187244 CCCTTCTGTT
Statistics
Matches: 49, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
41 4 0.08
42 45 0.92
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.47
Consensus pattern (42 bp):
TTTCTATTCAGCACTTATGTGCTTCCGTTCAACCCTGATGGG
Found at i:37202503 original size:23 final size:25
Alignment explanation
Indices: 37202477--37202530 Score: 76
Period size: 23 Copynumber: 2.2 Consensus size: 25
37202467 ATGAGGGGAG
*
37202477 AACAAAGGAA-GGAAAAGTA-AAGA
1 AACAAAGGAATCGAAAAGTAGAAGA
*
37202500 AACAAAGGAATCGAAAAGTAGGAGA
1 AACAAAGGAATCGAAAAGTAGAAGA
37202525 AACAAA
1 AACAAA
37202531 ATATCAGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 10 0.37
24 8 0.30
25 9 0.33
ACGTcount: A:0.63, C:0.07, G:0.24, T:0.06
Consensus pattern (25 bp):
AACAAAGGAATCGAAAAGTAGAAGA
Found at i:37202541 original size:25 final size:23
Alignment explanation
Indices: 37202427--37202530 Score: 59
Period size: 24 Copynumber: 4.2 Consensus size: 23
37202417 TCCACAATGC
37202427 ACAAAGGAATCGAAAAGTAAAGAA
1 ACAAA-GAATCGAAAAGTAAAGAA
* * **
37202451 ACAAAGGAA-GGAAAGGATGAGGGGAGA
1 ACAAA-GAATCGAAAAG-T-A-AAGA-A
*
37202478 ACAAAGGAA-GGAAAAGTAAAGAA
1 ACAAA-GAATCGAAAAGTAAAGAA
*
37202501 ACAAAGGAATCGAAAAGTAGGAGAA
1 ACAAA-GAATCGAAAAGTA-AAGAA
37202526 ACAAA
1 ACAAA
37202531 ATATCAGAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
23 15 0.23
24 20 0.31
25 11 0.17
26 3 0.05
27 16 0.25
ACGTcount: A:0.59, C:0.07, G:0.29, T:0.06
Consensus pattern (23 bp):
ACAAAGAATCGAAAAGTAAAGAA
Found at i:37208831 original size:36 final size:36
Alignment explanation
Indices: 37208784--37208854 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
37208774 GTTGTCAAAG
*
37208784 TATGAAAAATGGGTCATGGATGTATATGCTGAAAAA
1 TATGAAAAATGGGTCATGGATGTAAATGCTGAAAAA
37208820 TATGAAAAATGGGTCATGGATGTAAATGCTGAAAA
1 TATGAAAAATGGGTCATGGATGTAAATGCTGAAAA
37208855 TTAGAAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.27
Consensus pattern (36 bp):
TATGAAAAATGGGTCATGGATGTAAATGCTGAAAAA
Found at i:37216207 original size:48 final size:48
Alignment explanation
Indices: 37216155--37216247 Score: 177
Period size: 48 Copynumber: 1.9 Consensus size: 48
37216145 TAATATGGCC
37216155 GATGCCATGTCCCAAACATAGTCTTACACTAGCACACATATCAACGCT
1 GATGCCATGTCCCAAACATAGTCTTACACTAGCACACATATCAACGCT
*
37216203 GATGCCATGTCCCAGACATAGTCTTACACTAGCACACATATCAAC
1 GATGCCATGTCCCAAACATAGTCTTACACTAGCACACATATCAAC
37216248 CAAATGTCTT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.33, C:0.31, G:0.13, T:0.23
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATAGTCTTACACTAGCACACATATCAACGCT
Found at i:37218922 original size:34 final size:34
Alignment explanation
Indices: 37218856--37218927 Score: 83
Period size: 33 Copynumber: 2.1 Consensus size: 34
37218846 ACAGTGCATG
* ** *
37218856 CAGTAACAGTGTGGGCCTGAGCCCTATTCAGTAT
1 CAGTAACAGTCTGGGCCTGAGCCCTAAACAGTAA
*
37218890 CAGT-ACAGTCTGGGCCTTAGCCCTTAAACAGTAA
1 CAGTAACAGTCTGGGCCTGAGCCC-TAAACAGTAA
37218924 CAGT
1 CAGT
37218928 GTGGGCCTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
33 17 0.53
34 15 0.47
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (34 bp):
CAGTAACAGTCTGGGCCTGAGCCCTAAACAGTAA
Found at i:37218948 original size:28 final size:29
Alignment explanation
Indices: 37218856--37218949 Score: 86
Period size: 29 Copynumber: 3.1 Consensus size: 29
37218846 ACAGTGCATG
*
37218856 CAGTAACAGTGTGGGCCTGAGCCCTATTCAGTA
1 CAGTAACAGTGTGGGCCTAAGCCCTA---A-TA
* *
37218889 TCAGT-ACAGTCTGGGCCTTAGCCCTTAA-A
1 -CAGTAACAGTGTGGGCCTAAGCCC-TAATA
37218918 CAGTAACAGTGTGGGCCTAAGCCC-AATA
1 CAGTAACAGTGTGGGCCTAAGCCCTAATA
37218946 CAGT
1 CAGT
37218950 CTCAGTATAG
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
27 2 0.04
28 9 0.17
29 18 0.34
31 1 0.02
33 17 0.32
34 6 0.11
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (29 bp):
CAGTAACAGTGTGGGCCTAAGCCCTAATA
Found at i:37221563 original size:15 final size:16
Alignment explanation
Indices: 37221543--37221573 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
37221533 TTAGCTTAGT
37221543 GCTTGAAAAG-GGAAA
1 GCTTGAAAAGTGGAAA
37221558 GCTTGAAAAGTGGAAA
1 GCTTGAAAAGTGGAAA
37221574 AGTCTAGGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.45, C:0.06, G:0.32, T:0.16
Consensus pattern (16 bp):
GCTTGAAAAGTGGAAA
Found at i:37232994 original size:41 final size:41
Alignment explanation
Indices: 37232926--37233090 Score: 147
Period size: 41 Copynumber: 4.0 Consensus size: 41
37232916 CTTGATATAG
37232926 TTCACCGGCATGAAGCCTT-CTAGGCTCAAGACCTGATTCAA
1 TTCACCGGCATGAAG-CTTGCTAGGCTCAAGACCTGATTCAA
* * * *
37232967 TTCACCGGC-TCGAAGCTTGCTAAGCTCATGGCCTGATTTAA
1 TTCACCGGCAT-GAAGCTTGCTAGGCTCAAGACCTGATTCAA
* * * * **
37233008 TGCACTGGCATGAAGCCTGCTAGGCTCAAGACTTGACACAA
1 TTCACCGGCATGAAGCTTGCTAGGCTCAAGACCTGATTCAA
* * * * *
37233049 TACACCAGCACGAAGCTTGCT-GGGTCCAAGACCTGATACAA
1 TTCACCGGCATGAAGCTTGCTAGGCT-CAAGACCTGATTCAA
37233090 T
1 T
37233091 ATCTCCAGTA
Statistics
Matches: 98, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
40 7 0.07
41 90 0.92
42 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
TTCACCGGCATGAAGCTTGCTAGGCTCAAGACCTGATTCAA
Found at i:37242905 original size:15 final size:15
Alignment explanation
Indices: 37242887--37242922 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
37242877 ACATAATAAT
*
37242887 AATTTAAAGTTTTAA
1 AATTTAAAATTTTAA
37242902 AATTTAAAATTTTAA
1 AATTTAAAATTTTAA
*
37242917 CATTTA
1 AATTTA
37242923 TATATTGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (15 bp):
AATTTAAAATTTTAA
Found at i:37243300 original size:49 final size:49
Alignment explanation
Indices: 37243228--37243326 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
37243218 AACATGGTTG
37243228 TTGAAGGGATTTTTAACCTATTAATAAGAAGCTGTGAGTCCTCTTAGCA
1 TTGAAGGGATTTTTAACCTATTAATAAGAAGCTGTGAGTCCTCTTAGCA
37243277 TTGAAGGGATTTTTAACCTATTAATAAGAAGCTGTGAGTCCTCTTAGCA
1 TTGAAGGGATTTTTAACCTATTAATAAGAAGCTGTGAGTCCTCTTAGCA
37243326 T
1 T
37243327 GTTTAGTATT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.35
Consensus pattern (49 bp):
TTGAAGGGATTTTTAACCTATTAATAAGAAGCTGTGAGTCCTCTTAGCA
Found at i:37245415 original size:24 final size:24
Alignment explanation
Indices: 37245363--37245416 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
37245353 TTTTGATATA
*
37245363 ATAACATTTAAGATTTTGGATTAT
1 ATAATATTTAAGATTTTGGATTAT
37245387 ATAATATTTAAGATTTTGGATTAT
1 ATAATATTTAAGATTTTGGATTAT
37245411 ATAATA
1 ATAATA
37245417 AAAATTTTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.41, C:0.02, G:0.11, T:0.46
Consensus pattern (24 bp):
ATAATATTTAAGATTTTGGATTAT
Found at i:37245425 original size:21 final size:22
Alignment explanation
Indices: 37245375--37245429 Score: 76
Period size: 24 Copynumber: 2.5 Consensus size: 22
37245365 AACATTTAAG
*
37245375 ATTTTGGATTATATAATATTTAAG
1 ATTTTGGATTATATAATA--TAAA
37245399 ATTTTGGATTATATAATA-AAA
1 ATTTTGGATTATATAATATAAA
37245420 ATTTTGGATT
1 ATTTTGGATT
37245430 TCTTTGATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 12 0.40
24 18 0.60
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (22 bp):
ATTTTGGATTATATAATATAAA
Found at i:37249992 original size:45 final size:45
Alignment explanation
Indices: 37249941--37250032 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
37249931 ACATATTTGA
37249941 AAGAAATATATCACAGATTAGGAATACAAAATCCAATAACAATTT
1 AAGAAATATATCACAGATTAGGAATACAAAATCCAATAACAATTT
37249986 AAGAAATATATCACAGATTAGGAATACAAAATCCAATAACAATTT
1 AAGAAATATATCACAGATTAGGAATACAAAATCCAATAACAATTT
37250031 AA
1 AA
37250033 CTATAAAATA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.54, C:0.13, G:0.09, T:0.24
Consensus pattern (45 bp):
AAGAAATATATCACAGATTAGGAATACAAAATCCAATAACAATTT
Found at i:37251877 original size:15 final size:15
Alignment explanation
Indices: 37251852--37251887 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
37251842 CCTTGAACTT
37251852 TTTTAAAGGTTTAGAG
1 TTTT-AAGGTTTAGAG
*
37251868 TTTTAAGGTTTAGGG
1 TTTTAAGGTTTAGAG
37251883 TTTTA
1 TTTTA
37251888 TTTTGTGTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (15 bp):
TTTTAAGGTTTAGAG
Found at i:37264871 original size:30 final size:30
Alignment explanation
Indices: 37264837--37264906 Score: 106
Period size: 30 Copynumber: 2.3 Consensus size: 30
37264827 CAAGTTCATA
* *
37264837 TGGGT-TTGATCAGTTTTGACCTTCTTCAAT
1 TGGGTGTT-ATCAGTTTGGACCTTCTTCAAC
37264867 TGGGTGTTATCAGTTTGGACCTTCTTCAAC
1 TGGGTGTTATCAGTTTGGACCTTCTTCAAC
37264897 TGGGTGTTAT
1 TGGGTGTTAT
37264907 TAGTCTGGGT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 35 0.95
31 2 0.05
ACGTcount: A:0.16, C:0.16, G:0.24, T:0.44
Consensus pattern (30 bp):
TGGGTGTTATCAGTTTGGACCTTCTTCAAC
Found at i:37266788 original size:20 final size:20
Alignment explanation
Indices: 37266763--37266824 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
37266753 ACTTTAGTCA
37266763 ACAACACATGGGAGTTGGTC
1 ACAACACATGGGAGTTGGTC
*
37266783 ACAACAC-T-----TTAGTC
1 ACAACACATGGGAGTTGGTC
37266797 AACAACACATGGGAGTTGGTC
1 -ACAACACATGGGAGTTGGTC
37266818 ACAACAC
1 ACAACAC
37266825 CTCTCAATCG
Statistics
Matches: 33, Mismatches: 2, Indels: 14
0.67 0.04 0.29
Matches are distributed among these distances:
14 5 0.15
15 7 0.21
16 1 0.03
19 1 0.03
20 14 0.42
21 5 0.15
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.19
Consensus pattern (20 bp):
ACAACACATGGGAGTTGGTC
Found at i:37266799 original size:35 final size:35
Alignment explanation
Indices: 37266753--37266824 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
37266743 TAAGTTGTCA
37266753 ACTTTAGTCAACAACACATGGGAGTTGGTCACAAC
1 ACTTTAGTCAACAACACATGGGAGTTGGTCACAAC
37266788 ACTTTAGTCAACAACACATGGGAGTTGGTCACAAC
1 ACTTTAGTCAACAACACATGGGAGTTGGTCACAAC
37266823 AC
1 AC
37266825 CTCTCAATCG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (35 bp):
ACTTTAGTCAACAACACATGGGAGTTGGTCACAAC
Found at i:37272335 original size:46 final size:45
Alignment explanation
Indices: 37272277--37272495 Score: 196
Period size: 46 Copynumber: 4.7 Consensus size: 45
37272267 TCACTTGTGT
*
37272277 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCATATTATGA-
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCAT-TCA-GAC
* * * * *
37272323 GAGCCAGTGTAAGACCATGTCTGGGACATGGCGTTG-GCATTGAGAC
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCATTCAGAC
* *
37272369 GAGTACTAGTGTAAGACATGTCTGGGATATGCATCGGCC-TTCAGAC
1 GAG--CTAGTGTAAGACATGTCTGGGACATGCATCGACCATTCAGAC
* *
37272415 GTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGA-C-TACGAGAT
1 G--AGCTAGTGTAAGACATGTCTGGGACATGCATCGACCATTC-AGAC
* *
37272461 GTGTTAGTGTAAGACTATGTCTGGGACATGTCATC
1 GAGCTAGTGTAAGAC-ATGTCTGGGACATG-CATC
37272496 AGCACAAATA
Statistics
Matches: 145, Mismatches: 17, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
44 12 0.08
45 19 0.13
46 67 0.46
47 31 0.21
48 16 0.11
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCATTCAGAC
Found at i:37278095 original size:46 final size:44
Alignment explanation
Indices: 37278028--37278196 Score: 142
Period size: 46 Copynumber: 3.7 Consensus size: 44
37278018 TATATGTGCT
*
37278028 AGTGTAAGACATATCTGGGACATGCATCAGCCACAGCATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCACAG-ATGAGAGCC
* * * *
37278074 AGTGTAAGACATGTCTGGGACATGTATCGACCTCGAAAT-ATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCG-CCAC-AGATGA---GAGCC
* * * * * *
37278122 AGTGTAAGACATGTCTAGGACATGCATCGGCATTGAGACGAGGGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGCCA--CAGATGAGAGCC
*
37278168 AGTGTAAGACATGTTTGGGACATGCATCG
1 AGTGTAAGACATGTCTGGGACATGCATCG
37278197 GCCTCGCGAT
Statistics
Matches: 98, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
45 2 0.02
46 60 0.61
47 2 0.02
48 33 0.34
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCACAGATGAGAGCC
Found at i:37278252 original size:94 final size:94
Alignment explanation
Indices: 37278074--37278252 Score: 225
Period size: 94 Copynumber: 1.9 Consensus size: 94
37278064 CATGAGAGCC
* ** *
37278074 AGTGTAAGACATGTCTGGGACATGTATCGACCTCGAAATATTTAAGCCAGTGTAAGACATGTCTA
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAAATATACAAGCCAGTGTAAAACATGTCTA
*
37278139 GGACATGCATCGGCATTGAGACGAGGGCT
66 GGACATGCATCAGCATTGAGACGAGGGCT
* * ** * * *
37278168 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGCGATATACAATCTAGTGTAAAACCTGTCTA
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAAATATACAAGCCAGTGTAAAACATGTCTA
*
37278233 GGACATGGCTTCAGC-TTGAG
66 GGACAT-GCATCAGCATTGAG
37278253 GTGATAGATG
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
94 65 0.92
95 6 0.08
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAAATATACAAGCCAGTGTAAAACATGTCTA
GGACATGCATCAGCATTGAGACGAGGGCT
Found at i:37300642 original size:48 final size:48
Alignment explanation
Indices: 37300586--37300747 Score: 186
Period size: 48 Copynumber: 3.4 Consensus size: 48
37300576 ACAGCATGAG
*
37300586 AGCCAGTGTAAGACATGTCTAGGACATGCATCGACCTCGAGATATTTA
1 AGCCAGTGTAAGACATGTCTAGGACATGCATCGACCTCGAGATATTCA
* * * * *
37300634 AGCCAGTGTAAGACATGTTTGGGACATGCATCGACAT--TGATA-TGA
1 AGCCAGTGTAAGACATGTCTAGGACATGCATCGACCTCGAGATATTCA
* * *
37300679 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGACCTCGCGATATACA
1 -AGCCAGTGTAAGACATGTCTAGGACATGCATCGACCTCGAGATATTCA
* * *
37300728 GGCTAGTGTAAGACCTGTCT
1 AGCCAGTGTAAGACATGTCT
37300748 GGGGTATGGC
Statistics
Matches: 96, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
45 2 0.02
46 37 0.39
48 56 0.58
49 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (48 bp):
AGCCAGTGTAAGACATGTCTAGGACATGCATCGACCTCGAGATATTCA
Found at i:37300693 original size:46 final size:47
Alignment explanation
Indices: 37300581--37300714 Score: 182
Period size: 46 Copynumber: 2.9 Consensus size: 47
37300571 CTGTCACAGC
*
37300581 ATGAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGACCTCGAGAT
1 ATGAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGACATC-AGAT
* * * *
37300629 ATTTA-AGCCAGTGTAAGACATGTTTGGGACATGCATCGACAT-TGAT
1 A-TGAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGACATCAGAT
*
37300675 ATGAGAGCTAGTGTAAGACATGTCTAGGACATGCATCGAC
1 ATGAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGAC
37300715 CTCGCGATAT
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
45 2 0.03
46 36 0.48
48 35 0.47
49 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (47 bp):
ATGAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGACATCAGAT
Found at i:37308135 original size:42 final size:41
Alignment explanation
Indices: 37308053--37308201 Score: 183
Period size: 41 Copynumber: 3.6 Consensus size: 41
37308043 GAGTGTAAAA
* * * *
37308053 AGGGGTACGTATGTGCTATTCAGGGGTA-CAAAAGTACAAAT
1 AGGGGCACGCATGTGCAATTCAGGGGTATC-GAAGTACAAAT
* *
37308094 AGGGGCACGTATGTGCAATTCAGAGGGTATCGAATTACAAAT
1 AGGGGCACGCATGTGCAATTCAG-GGGTATCGAAGTACAAAT
* * *
37308136 AGGGGCATGCATGTGCAATTTAGGGGTATCGAAGTACAAAC
1 AGGGGCACGCATGTGCAATTCAGGGGTATCGAAGTACAAAT
*
37308177 AGGGGCACGCATGTGCAGTTCAGGG
1 AGGGGCACGCATGTGCAATTCAGGG
37308202 TATAATTAAT
Statistics
Matches: 94, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
41 59 0.63
42 34 0.36
43 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.32, T:0.22
Consensus pattern (41 bp):
AGGGGCACGCATGTGCAATTCAGGGGTATCGAAGTACAAAT
Found at i:37328449 original size:5 final size:5
Alignment explanation
Indices: 37328441--37328466 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
37328431 TAATTTATCT
37328441 AATTA AATTA AATTA AATTA AATTA A
1 AATTA AATTA AATTA AATTA AATTA A
37328467 TAAATAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AATTA
Found at i:37330733 original size:28 final size:28
Alignment explanation
Indices: 37330701--37330756 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
37330691 GGGTCAATAG
37330701 TGTAAATATTTTAAGGGTGGAAGGATCT
1 TGTAAATATTTTAAGGGTGGAAGGATCT
37330729 TGTAAATATTTTAAGGGTGGAAGGATCT
1 TGTAAATATTTTAAGGGTGGAAGGATCT
37330757 AGAAAATAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.04, G:0.29, T:0.36
Consensus pattern (28 bp):
TGTAAATATTTTAAGGGTGGAAGGATCT
Found at i:37330763 original size:28 final size:28
Alignment explanation
Indices: 37330704--37330764 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
37330694 TCAATAGTGT
* *
37330704 AAATATTTTAAGGGTGGAAGGATCTTGT
1 AAATATTTTAAGGGTGGAAGGATCTAGA
37330732 AAATATTTTAAGGGTGGAAGGATCTAGA
1 AAATATTTTAAGGGTGGAAGGATCTAGA
37330760 AAATA
1 AAATA
37330765 GGAAAATAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.39, C:0.03, G:0.26, T:0.31
Consensus pattern (28 bp):
AAATATTTTAAGGGTGGAAGGATCTAGA
Found at i:37335438 original size:23 final size:23
Alignment explanation
Indices: 37335412--37335455 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
37335402 TCATGATATT
*
37335412 GCACTTTTGTGCTTTGTGTTACA
1 GCACTTCTGTGCTTTGTGTTACA
*
37335435 GCACTTCTGTGTTTTGTGTTA
1 GCACTTCTGTGCTTTGTGTTA
37335456 TCTGATATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.11, C:0.16, G:0.23, T:0.50
Consensus pattern (23 bp):
GCACTTCTGTGCTTTGTGTTACA
Found at i:37338582 original size:15 final size:14
Alignment explanation
Indices: 37338562--37338591 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
37338552 ATTACGTTTG
37338562 AAAAAATAAATAAAT
1 AAAAAATAAA-AAAT
37338577 AAAAAATAAAAAAT
1 AAAAAATAAAAAAT
37338591 A
1 A
37338592 TATAAAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (14 bp):
AAAAAATAAAAAAT
Found at i:37338585 original size:7 final size:7
Alignment explanation
Indices: 37338562--37338591 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
37338552 ATTACGTTTG
37338562 AAAAAAT
1 AAAAAAT
37338569 AAATAAAT
1 AAA-AAAT
37338577 AAAAAAT
1 AAAAAAT
37338584 AAAAAAT
1 AAAAAAT
37338591 A
1 A
37338592 TATAAAATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (7 bp):
AAAAAAT
Found at i:37339196 original size:13 final size:13
Alignment explanation
Indices: 37339178--37339232 Score: 80
Period size: 13 Copynumber: 4.5 Consensus size: 13
37339168 AATTTTAAAC
37339178 TATTTAGTGATAA
1 TATTTAGTGATAA
37339191 TATTTAGTGATAA
1 TATTTAGTGATAA
*
37339204 TATTTA-AGAT--
1 TATTTAGTGATAA
37339214 TATTTAGTGATAA
1 TATTTAGTGATAA
37339227 TATTTA
1 TATTTA
37339233 AGAAAAATCT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
10 6 0.16
11 3 0.08
12 3 0.08
13 25 0.68
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:37339217 original size:23 final size:23
Alignment explanation
Indices: 37339191--37339235 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
37339181 TTAGTGATAA
37339191 TATTTAGTGATAATATTTAAGAT
1 TATTTAGTGATAATATTTAAGAT
37339214 TATTTAGTGATAATATTTAAGA
1 TATTTAGTGATAATATTTAAGA
37339236 AAAATCTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (23 bp):
TATTTAGTGATAATATTTAAGAT
Found at i:37339512 original size:44 final size:44
Alignment explanation
Indices: 37339449--37339539 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
37339439 ACACAATTGT
37339449 AACTGCGACATCGATTTTAATCACTAAAAAGGCAATATTAGATA
1 AACTGCGACATCGATTTTAATCACTAAAAAGGCAATATTAGATA
*
37339493 AACTGCGACATCGATTTTAATCACTAAAAAGGCGATATTAGATA
1 AACTGCGACATCGATTTTAATCACTAAAAAGGCAATATTAGATA
37339537 AAC
1 AAC
37339540 GATCCCTATA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.26
Consensus pattern (44 bp):
AACTGCGACATCGATTTTAATCACTAAAAAGGCAATATTAGATA
Found at i:37349975 original size:30 final size:30
Alignment explanation
Indices: 37349941--37349998 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
37349931 ATTTTATTGT
37349941 TAATTTT-TTCATTATTTTAAAGACATTTTC
1 TAATTTTATT-ATTATTTTAAAGACATTTTC
* *
37349971 TAATTTTATTATTATTTTAGAGGCATTT
1 TAATTTTATTATTATTTTAAAGACATTT
37349999 GCTTGTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (30 bp):
TAATTTTATTATTATTTTAAAGACATTTTC
Found at i:37359138 original size:41 final size:40
Alignment explanation
Indices: 37359080--37359277 Score: 215
Period size: 41 Copynumber: 4.8 Consensus size: 40
37359070 TTAAACAGAT
* * * *
37359080 TCACCGGCATTTTGCCTGCTAGGCTTAAAGCCTG-ATTCAGTA
1 TCACCGGCA-TTAGCCTGCTAGACTTAAAGTCTGAAAT--GTA
* *
37359122 -CACCGGCACTTAGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCA-TTAGCCTGCTAGACTTAAAGTCTGAAATGTA
37359162 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
1 TCACCGGCATT-AGCCTGCTAGACTTAAAGTCTGAAATGTA
37359203 TCACCGGCATTTAGCCTGCTAGACTTAAAGTCTG-AAT-TA
1 TCACCGGCA-TTAGCCTGCTAGACTTAAAGTCTGAAATGTA
* *
37359242 CTTCACCGGCATTAAGCCTGCTAGACGTAACGTCTG
1 --TCACCGGCATT-AGCCTGCTAGACTTAAAGTCTG
37359278 TATTATATTC
Statistics
Matches: 138, Mismatches: 11, Indels: 15
0.84 0.07 0.09
Matches are distributed among these distances:
39 2 0.01
40 10 0.07
41 122 0.88
42 4 0.03
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (40 bp):
TCACCGGCATTAGCCTGCTAGACTTAAAGTCTGAAATGTA
Found at i:37359217 original size:82 final size:80
Alignment explanation
Indices: 37359080--37359277 Score: 238
Period size: 82 Copynumber: 2.4 Consensus size: 80
37359070 TTAAACAGAT
** * * *
37359080 TCACCGGCATTTTGCCTGCTAGGCTTAAAGCCTGATTCAGTACACCGGCACTTAGCCTGCTAGAC
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAT-AGTACACCGGCACTTAGCCTGCTAGAC
*
37359145 ATATAGTCTGAAATGTA-
65 ATAAAGTCTG-AAT-TAC
*
37359162 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAA-ATGTATCACCGGCATTTAGCCTGCTAGA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAATA-GTA-CACCGGCACTTAGCCTGCTAGA
*
37359226 CTTAAAGTCTGAATTAC
64 CATAAAGTCTGAATTAC
* *
37359243 TTCACCGGCATTAAGCCTGCTAGACGTAACGTCTG
1 -TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTG
37359278 TATTATATTC
Statistics
Matches: 102, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
80 3 0.03
81 6 0.06
82 93 0.91
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (80 bp):
TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAATAGTACACCGGCACTTAGCCTGCTAGACA
TAAAGTCTGAATTAC
Found at i:37366369 original size:53 final size:54
Alignment explanation
Indices: 37366300--37366506 Score: 184
Period size: 53 Copynumber: 3.8 Consensus size: 54
37366290 TTCCTTTTTA
* * *
37366300 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACGTGGTATCCTTGCCTTATAG
* * ** * * *
37366353 AACTCACCATTGCCATGCCTTGGTATGGTTTTACGTAGG-ATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACGT-GGTATCCTTGCCTTATAG
** * * * * * * * *
37366407 TAGTTTATCAATGCTATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACGTGGTATCCTTGCCTTATAG
* *
37366462 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACGTGGTATCCTT
37366507 AAACCCTAAT
Statistics
Matches: 117, Mismatches: 33, Indels: 7
0.75 0.21 0.04
Matches are distributed among these distances:
53 42 0.36
54 40 0.34
55 35 0.30
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACGTGGTATCCTTGCCTTATAG
Found at i:37369638 original size:23 final size:23
Alignment explanation
Indices: 37369611--37369657 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
37369601 CTAAAAGAAA
* *
37369611 GCATTATCTATTAAGGAGATGGG
1 GCATTATCTATGAAGGAGAGGGG
37369634 GCATTATCTATGAAGGAGAGGGG
1 GCATTATCTATGAAGGAGAGGGG
37369657 G
1 G
37369658 AGCAGTTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.30, C:0.09, G:0.36, T:0.26
Consensus pattern (23 bp):
GCATTATCTATGAAGGAGAGGGG
Found at i:37384115 original size:46 final size:46
Alignment explanation
Indices: 37384048--37384139 Score: 148
Period size: 46 Copynumber: 2.0 Consensus size: 46
37384038 TTCTTGTTCT
* * *
37384048 GCCTTTTGGATTAACTAATGCTCCTGATGTTTTTATGGATTTGATG
1 GCCTTTTGGATTAACTAATGCTCCTGATATTTTTATCGACTTGATG
*
37384094 GCCTTTTGGATTAACTAATGCTCCTGCTATTTTTATCGACTTGATG
1 GCCTTTTGGATTAACTAATGCTCCTGATATTTTTATCGACTTGATG
37384140 AATCAGATCT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.45
Consensus pattern (46 bp):
GCCTTTTGGATTAACTAATGCTCCTGATATTTTTATCGACTTGATG
Found at i:37387924 original size:27 final size:26
Alignment explanation
Indices: 37387880--37387931 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
37387870 CTCGCTGTAA
*
37387880 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
37387907 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
37387932 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:37388053 original size:98 final size:98
Alignment explanation
Indices: 37387884--37388145 Score: 499
Period size: 98 Copynumber: 2.7 Consensus size: 98
37387874 CTGTAATCTG
*
37387884 GTGGCCTCGCCACATATATCTGT-TCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGCAAT
1 GTGGCCTAGCCACA-ATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGCAAT
37387948 TTGGTGGTTTCGCCACATATATATATCTGTTCTA
65 TTGGTGGTTTCGCCACATATATATATCTGTTCTA
37387982 GTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGCAATT
1 GTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGCAATT
37388047 TGGTGGTTTCGCCACATATATATATCTGTTCTA
66 TGGTGGTTTCGCCACATATATATATCTGTTCTA
37388080 GTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGCAATT
1 GTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGCAATT
37388145 T
66 T
37388146 CTGTGGTGTG
Statistics
Matches: 162, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
97 8 0.05
98 154 0.95
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.33
Consensus pattern (98 bp):
GTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGCAATT
TGGTGGTTTCGCCACATATATATATCTGTTCTA
Found at i:37394506 original size:6 final size:6
Alignment explanation
Indices: 37394483--37394796 Score: 250
Period size: 6 Copynumber: 50.8 Consensus size: 6
37394473 TATCAAAACT
* * * * *
37394483 AGAATC AAAATG AGAATC AGAATC AGAATC AAAATT AG-GTGAC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* *
37394532 AAAATC AGAATC AGAATC AGAATC AGAATT AGGTAAT- AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* * *
37394581 AGTATC AGGTAA-C AGAATC AGAATC AGAACC AGAATC AGAATT AGGTAA-C
1 AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC
* *
37394631 AGAATC AGAATC AGTATC AGGTAA-C AGAATC AGAATC AGAACC AGAATC
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC
* *
37394680 AGAATT AGGTAA-C AGAATC AGAATC AGTATC AGGTAA-C AGAATC AGAATC
1 AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* * *
37394730 AGAACC AGAATC AGAATT AGGTAA-C AGAATC AGAATC AGTATC AGGTAA-C
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC
37394780 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
37394797 GTGAATGCAA
Statistics
Matches: 248, Mismatches: 33, Indels: 54
0.74 0.10 0.16
Matches are distributed among these distances:
5 18 0.07
6 194 0.78
7 22 0.09
8 14 0.06
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:37394540 original size:37 final size:37
Alignment explanation
Indices: 37394495--37394774 Score: 192
Period size: 37 Copynumber: 8.4 Consensus size: 37
37394485 AATCAAAATG
*
37394495 AGAATCAGAATCAGAATCAAAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAAAATTAGGTAACAGAATC
* * *
37394532 AAAATCAGAATCAGAATC-AGA--A--T--CAGAATT
1 AGAATCAGAATCAGAATCAAAATTAGGTAACAGAATC
** *
37394562 AGGTAAT-AGAATCAGAATCAGTATCAGGTAACAGAATC
1 A-G-AATCAGAATCAGAATCAAAATTAGGTAACAGAATC
* *
37394600 AGAATCAGAACCAGAATCAGAATTAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAAAATTAGGTAACAGAATC
37394637 AGAATCAG--T----ATC------AGGTAACAGAATC
1 AGAATCAGAATCAGAATCAAAATTAGGTAACAGAATC
* *
37394662 AGAATCAGAACCAGAATCAGAATTAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAAAATTAGGTAACAGAATC
37394699 AGAATCAG--T----ATC------AGGTAACAGAATC
1 AGAATCAGAATCAGAATCAAAATTAGGTAACAGAATC
* *
37394724 AGAATCAGAACCAGAATCAGAATTAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAAAATTAGGTAACAGAATC
*
37394761 AGAATCAGTATCAG
1 AGAATCAGAATCAG
37394775 GTAACAGAAT
Statistics
Matches: 193, Mismatches: 16, Indels: 68
0.70 0.06 0.25
Matches are distributed among these distances:
25 42 0.22
30 7 0.04
31 24 0.12
32 5 0.03
34 2 0.01
36 6 0.03
37 100 0.52
38 7 0.04
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAAAATTAGGTAACAGAATC
Found at i:37394600 original size:62 final size:62
Alignment explanation
Indices: 37394534--37394795 Score: 506
Period size: 62 Copynumber: 4.2 Consensus size: 62
37394524 ACAGAATCAA
* *
37394534 AATCAGAATCAGAATCAGAATCAGAATTAGGTAATAGAATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAG
37394596 AATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAG
37394658 AATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAG
37394720 AATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAG
37394782 AATCAGAATCAGAA
1 AATCAGAATCAGAA
37394796 TGTGAATGCA
Statistics
Matches: 198, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 198 1.00
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.18
Consensus pattern (62 bp):
AATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAG
Found at i:37394793 original size:25 final size:25
Alignment explanation
Indices: 37394525--37394733 Score: 186
Period size: 25 Copynumber: 8.4 Consensus size: 25
37394515 AATTAGGTGA
*
37394525 CAGAATCAAAATCA-G-AATCAGAAT
1 CAGAATCAGAATCAGGTAA-CAGAAT
* *
37394549 CAGAATCAGAATTAGGTAATAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
*
37394574 CAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
*
37394599 CAGAATCAGAACCA-G-AATCAGAAT
1 CAGAATCAGAATCAGGTAA-CAGAAT
* *
37394623 TAGGTAA-CAGAATCA-G-AATCAGTAT
1 CA-G-AATCAGAATCAGGTAA-CAGAAT
*
37394648 CAGGTAA-CAGAATCA-G-AATCAGAAC
1 CA-G-AATCAGAATCAGGTAA-CAGAAT
*
37394673 CAGAATCAGAATTAGGTAACAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
*
37394698 CAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
37394723 CAGAATCAGAA
1 CAGAATCAGAA
37394734 CCAGAATCAG
Statistics
Matches: 158, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
23 4 0.03
24 28 0.18
25 120 0.76
26 6 0.04
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGGTAACAGAAT
Found at i:37395241 original size:27 final size:28
Alignment explanation
Indices: 37395211--37395562 Score: 435
Period size: 27 Copynumber: 13.0 Consensus size: 28
37395201 GGGGTAAAGT
* *
37395211 GGTAATTT-TACCCCACAAGGGTATCTC
1 GGTAATTTCTACCCTACAAGGGTATTTC
*
37395238 GGTAA-TTCTACCTTAC-AGGAGTATTTC
1 GGTAATTTCTACCCTACAAGG-GTATTTC
* *
37395265 AGTAA-TTCTACCCTACAGGGGTATTTC
1 GGTAATTTCTACCCTACAAGGGTATTTC
37395292 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTTCTACCCTACAAGGGTATTTC
* *
37395319 GATAA-TTCTACCCTACAAGGGTATTTT
1 GGTAATTTCTACCCTACAAGGGTATTTC
*
37395346 AGTAA-TTCTACCCTACAAGGGTATTTC
1 GGTAATTTCTACCCTACAAGGGTATTTC
* * *
37395373 GAT-ATTTCTACCCTACAGGGGTATTTT
1 GGTAATTTCTACCCTACAAGGGTATTTC
* *
37395400 AGT-ATTTCTACCCTACAGGGGTATTTC
1 GGTAATTTCTACCCTACAAGGGTATTTC
*
37395427 GAT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTTCTACCCTACAAGGGTATTTC
*
37395454 GG-CATTTCTACCCTACAAGGGTATTTC
1 GGTAATTTCTACCCTACAAGGGTATTTC
37395481 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTTCTACCCTACAAGGGTATTTC
* *
37395508 GG-CATTTCTACCCTACAAGGGTATTTT
1 GGTAATTTCTACCCTACAAGGGTATTTC
*
37395535 AGTAA-TTCTACCCTACAAGGGTATTTC
1 GGTAATTTCTACCCTACAAGGGTATTTC
37395562 G
1 G
37395563 AAGGTATTTC
Statistics
Matches: 286, Mismatches: 29, Indels: 20
0.85 0.09 0.06
Matches are distributed among these distances:
26 7 0.02
27 275 0.96
28 4 0.01
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (28 bp):
GGTAATTTCTACCCTACAAGGGTATTTC
Found at i:37395659 original size:27 final size:27
Alignment explanation
Indices: 37395629--37395693 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
37395619 GGTACTTTGG
37395629 TAATTTTACAAGCCGAGGATATTTCAA
1 TAATTTTACAAGCCGAGGATATTTCAA
* * * *
37395656 TAATTTTACAGGTCGAGGGTATTTCAG
1 TAATTTTACAAGCCGAGGATATTTCAA
*
37395683 TAATTTCACAA
1 TAATTTTACAA
37395694 ATCAGGGGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (27 bp):
TAATTTTACAAGCCGAGGATATTTCAA
Found at i:37395709 original size:81 final size:81
Alignment explanation
Indices: 37395619--37396127 Score: 260
Period size: 81 Copynumber: 6.3 Consensus size: 81
37395609 GTAAATCAAA
* * **
37395619 GGTACTTTGGTAATTTTACAAGCCGAG-GATATTTCAATAATTTTACAGGTCGA-GGGTATTTCA
1 GGTATTTTGGTAATTTTACAA-ACGAGTGATATTTCAATAATTTTACA-AACGAGGGGTATTTCA
37395682 GTAATTTCACAAA-TCAGG
64 GTAATTTCACAAACT-AGG
* * * ** * **
37395700 GGTATTTTGGTAATATTACAAACTAGTGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAACGAGTGATATTTCAATAATTTTACAAACGAGGGGTATTTCAGT
*
37395765 AATTTTACAAACTAGG
66 AATTTCACAAACTAGG
* * * * * *
37395781 GGTATTTTGGTAATTTTATAAACCAAG-G-TAATTTTAGTAATTTTACAAACCAGGGGTATTT-T
1 GGTATTTTGGTAATTTTACAAA-CGAGTGAT-ATTTCAATAATTTTACAAACGAGGGGTATTTCA
*** * *
37395843 GATAATTTTGTAAACCAAG
64 G-TAATTTCACAAACTAGG
* * * *** * **
37395862 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAACGAGTGATATTTCAATAATTTTACAAACGAGGGGTATTTCAGT
** * * * *
37395927 GGTTTTATAAACCAAG
66 AATTTCACAAACTAGG
* * * * * * *** ** ** * **
37395943 GGTATTTTTGTGATTTTACCAACTA-TGGGTTTTTTTGTAATTTTGTAAAATAAGGGTATTTTGG
1 GGTATTTTGGTAATTTTACAAACGAGT-GATATTTCAATAATTTTACAAACGAGGGGTATTTCAG
*
37396007 TAATTTTACAAACTAGG
65 TAATTTCACAAACTAGG
* * * * * * **
37396024 GGTATTTTGGTAATTTTATAAACCAAG-GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGG
1 GGTATTTTGGTAATTTTACAAA-CGAGTGATATTTCAATAATTTTACAAACGAGGGGTATTTCAG
*** * *
37396088 TAATTTTGTAAACCAAG
65 TAATTTCACAAACTAGG
*
37396105 GGTATTTTGGTGATTTTACAAAC
1 GGTATTTTGGTAATTTTACAAAC
37396128 TAGGGGTATT
Statistics
Matches: 352, Mismatches: 64, Indels: 25
0.80 0.15 0.06
Matches are distributed among these distances:
80 11 0.03
81 333 0.95
82 8 0.02
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAACGAGTGATATTTCAATAATTTTACAAACGAGGGGTATTTCAGT
AATTTCACAAACTAGG
Found at i:37396156 original size:27 final size:27
Alignment explanation
Indices: 37395672--37396147 Score: 560
Period size: 27 Copynumber: 17.6 Consensus size: 27
37395662 TACAGGTCGA
** *
37395672 GGGTATTTCAGTAATTTCACAAA-TCAG
1 GGGTATTTTGGTAATTTTACAAACT-AG
*
37395699 GGGTATTTTGGTAATATTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
37395726 TGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
37395753 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
37395780 GGGTATTTTGGTAATTTTATAAACCA-
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
37395806 AGGTAATTTTAGTAATTTTACAAACCAG
1 GGGT-ATTTTGGTAATTTTACAAACTAG
* ** * *
37395834 GGGTATTTTGATAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
37395861 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
37395888 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
** * * *
37395915 GGGTATTTTGGTGGTTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
37395942 GGGTATTTTTGTGATTTTACCAACTAT
1 GGGTATTTTGGTAATTTTACAAACTAG
* * ** * *
37395969 GGGTTTTTTTGTAATTTTGTAAAATAA
1 GGGTATTTTGGTAATTTTACAAACTAG
37395996 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
37396023 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
*
37396050 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
** * *
37396077 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
*
37396104 GGGTATTTTGGTGATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
37396131 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
37396148 GGTAAACTAA
Statistics
Matches: 379, Mismatches: 67, Indels: 6
0.84 0.15 0.01
Matches are distributed among these distances:
26 3 0.01
27 372 0.98
28 4 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:37400857 original size:13 final size:13
Alignment explanation
Indices: 37400824--37400851 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
37400814 GATGCTCCTA
37400824 ATCCTTTAATTTC
1 ATCCTTTAATTTC
37400837 ATCCTTTAATTTC
1 ATCCTTTAATTTC
37400850 AT
1 AT
37400852 GTTTTATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.21, G:0.00, T:0.54
Consensus pattern (13 bp):
ATCCTTTAATTTC
Found at i:37403151 original size:20 final size:20
Alignment explanation
Indices: 37403126--37403165 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
37403116 CAGGCTCATC
37403126 TAGTAATGCAGTACGATGCA
1 TAGTAATGCAGTACGATGCA
37403146 TAGTAATGCAGTACGATGCA
1 TAGTAATGCAGTACGATGCA
37403166 AATGGAGGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (20 bp):
TAGTAATGCAGTACGATGCA
Found at i:37413298 original size:20 final size:20
Alignment explanation
Indices: 37413273--37413310 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
37413263 TGTTTAGGGC
37413273 AAAAATTTTCT-AAGTTTTGT
1 AAAAA-TTTCTAAAGTTTTGT
37413293 AAAAATTTCTAAAGTTTT
1 AAAAATTTCTAAAGTTTT
37413311 CGGTTTAGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.47
Consensus pattern (20 bp):
AAAAATTTCTAAAGTTTTGT
Found at i:37420347 original size:167 final size:167
Alignment explanation
Indices: 37420065--37420387 Score: 470
Period size: 167 Copynumber: 1.9 Consensus size: 167
37420055 GCAATTCGTA
* * * * * *
37420065 ATGCAGCAAATGAAAAGGTTCAAGTTATAGAAATGCAAATCGTAAACTCCGAGCTATTTGTTGAT
1 ATGCAACAAATGAAAAGGTTCAAGTTATAGAAATACAAACCATAAACTCAGAGCTATTTGTCGAT
* * * *
37420130 GACTTTATCTTTTCCTTTCCATTTTGAGGAATCCATATCGACATTAGCTACAGATTAACATAAAT
66 GAATTTATATTTTCCTTTCCATTTGGAGGAATCCAGATCGACATTAGCTACAGATTAACATAAAT
37420195 ATACAAAATCATAAAAACACAATCATATGTTATTACC
131 ATACAAAATCATAAAAACACAATCATATGTTATTACC
*
37420232 ATGCAACAAATGAAAATGTT-AAGGTTATAGAAATACAAACCATAAACTCAGAGCTATTTGTCGA
1 ATGCAACAAATGAAAAGGTTCAA-GTTATAGAAATACAAACCATAAACTCAGAGCTATTTGTCGA
* * *
37420296 T-AATTATATATTTTCCTTTCCATTTGGAGGAATCCAGGTCGACGTTAGCTACGGATTAACATAA
65 TGAATT-TATATTTTCCTTTCCATTTGGAGGAATCCAGATCGACATTAGCTACAGATTAACATAA
* *
37420360 ATATACCAAATCATAAATACACAATCAT
129 ATATACAAAATCATAAAAACACAATCAT
37420388 TTTCGCATTC
Statistics
Matches: 138, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
166 5 0.04
167 133 0.96
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (167 bp):
ATGCAACAAATGAAAAGGTTCAAGTTATAGAAATACAAACCATAAACTCAGAGCTATTTGTCGAT
GAATTTATATTTTCCTTTCCATTTGGAGGAATCCAGATCGACATTAGCTACAGATTAACATAAAT
ATACAAAATCATAAAAACACAATCATATGTTATTACC
Found at i:37422430 original size:58 final size:57
Alignment explanation
Indices: 37422276--37422430 Score: 195
Period size: 57 Copynumber: 2.7 Consensus size: 57
37422266 CCACATATCA
* * *
37422276 TATAACAGGATTACCAGTCCAGGCTAAATCCTTTTAGTAACATATGCTCTAAAGAGCT
1 TATATCAGGATTACCCGTCCAGGCTAAATCCTTTTA-TAACATATGCTCGAAAGAGCT
* * ** * *
37422334 TA-ATCTGGATTACCCGTCTAGGCTAAATTCAATTTATAACATATGCTCGAGAGGGCT
1 TATATCAGGATTACCCGTCCAGGCTAAA-TCCTTTTATAACATATGCTCGAAAGAGCT
37422391 TATATCAGGATTACCCGTCCAGGCTAAATCCTTTCTATAA
1 TATATCAGGATTACCCGTCCAGGCTAAATCCTTT-TATAA
37422431 TGAGGTCAAT
Statistics
Matches: 81, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
57 45 0.56
58 36 0.44
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (57 bp):
TATATCAGGATTACCCGTCCAGGCTAAATCCTTTTATAACATATGCTCGAAAGAGCT
Found at i:37422698 original size:19 final size:19
Alignment explanation
Indices: 37422674--37422711 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
37422664 TTATCGTTTA
37422674 TCAGGCATTATCACTTATT
1 TCAGGCATTATCACTTATT
*
37422693 TCAGGCATTATCATTTATT
1 TCAGGCATTATCACTTATT
37422712 GGGCTTTGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.18, G:0.11, T:0.45
Consensus pattern (19 bp):
TCAGGCATTATCACTTATT
Found at i:37424883 original size:27 final size:27
Alignment explanation
Indices: 37424853--37424938 Score: 122
Period size: 27 Copynumber: 3.2 Consensus size: 27
37424843 ATGACGAAGT
37424853 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
*
37424880 CACCAGA-ATAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
37424907 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
37424934 CACCA
1 CACCA
37424939 AGTCGCTTCC
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
26 7 0.13
27 44 0.83
28 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:37432863 original size:43 final size:43
Alignment explanation
Indices: 37432717--37432864 Score: 163
Period size: 43 Copynumber: 3.4 Consensus size: 43
37432707 TAACGAGACA
* * *
37432717 TGATTATGTGTAAGACCATGTCTAGGACATCGGCATC-ATATTG
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATA-TG
* * * * *
37432760 CGATTACGTGTAAAACCATGTCTGGGACATTGACATCGTTATA
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATATG
* *
37432803 TGATTTCGTGTAAGACCATGTTTGGGACATTGGCATCGATATG
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATATG
* * *
37432846 TGATAACATGTAGGACCAT
1 TGATTACGTGTAAGACCAT
37432865 ATCTAAGATA
Statistics
Matches: 85, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
43 83 0.98
44 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATATG
Found at i:37434352 original size:10 final size:10
Alignment explanation
Indices: 37434333--37434371 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
37434323 TTAAATTCTA
37434333 AAAGATAAAT
1 AAAGATAAAT
37434343 ACAA-ATAAAT
1 A-AAGATAAAT
37434353 AAAGATAAAT
1 AAAGATAAAT
37434363 AAAGATAAA
1 AAAGATAAA
37434372 AGCTAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 2 0.07
10 23 0.85
11 2 0.07
ACGTcount: A:0.72, C:0.03, G:0.08, T:0.18
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:37434408 original size:14 final size:14
Alignment explanation
Indices: 37434386--37434425 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
37434376 AAAATAAAAT
37434386 CTAAATAATTAATC
1 CTAAATAATTAATC
*
37434400 CTTAATAATT-ATC
1 CTAAATAATTAATC
37434413 CTAATATAATTAA
1 CTAA-ATAATTAA
37434426 AAATTAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
13 6 0.27
14 15 0.68
15 1 0.05
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.40
Consensus pattern (14 bp):
CTAAATAATTAATC
Found at i:37438198 original size:15 final size:15
Alignment explanation
Indices: 37438178--37438208 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37438168 ATATTTTAAC
*
37438178 TATATTATAATATGT
1 TATATTATAACATGT
37438193 TATATTATAACATGT
1 TATATTATAACATGT
37438208 T
1 T
37438209 TCTTTTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (15 bp):
TATATTATAACATGT
Found at i:37440739 original size:36 final size:36
Alignment explanation
Indices: 37440690--37440761 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 36
37440680 CAAGCCCACG
37440690 GAATGCCAGATTTTTGGCATTTC-AGCTTTTACCGAT
1 GAATGCCAGATTTTTGGCATTTCGA-CTTTTACCGAT
*
37440726 GAATGCC-GAATTTTTGGCATTTCGACTTTTGCCGAT
1 GAATGCCAG-ATTTTTGGCATTTCGACTTTTACCGAT
37440762 TTGAACTATG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
35 1 0.03
36 31 0.94
37 1 0.03
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (36 bp):
GAATGCCAGATTTTTGGCATTTCGACTTTTACCGAT
Found at i:37445334 original size:39 final size:39
Alignment explanation
Indices: 37445280--37445490 Score: 282
Period size: 39 Copynumber: 5.4 Consensus size: 39
37445270 AATGTATGAT
* * *
37445280 AGTATGCTCAATCAAGCTATACCTACTGATTCTATTCAA
1 AGTATGCTCAATCAAGCCATACCTACTGATTCTACTAAA
*
37445319 AGTATGCTCAATCAAGCCATACCCACTGATTCTACTAAA
1 AGTATGCTCAATCAAGCCATACCTACTGATTCTACTAAA
* *
37445358 AGTATGCTCAAACAAGCCATACCTACTAATTCTACTAAA
1 AGTATGCTCAATCAAGCCATACCTACTGATTCTACTAAA
* * *
37445397 AGTATGCTCAATCGAGGCATACCTACCGATTCTACTAAA
1 AGTATGCTCAATCAAGCCATACCTACTGATTCTACTAAA
* * *
37445436 AGTATGCTCAATCGAGCTATAACC-ACTGATTCTACTGAA
1 AGTATGCTCAATCAAGCCAT-ACCTACTGATTCTACTAAA
*
37445475 AGT-TGCTCAAACAAGC
1 AGTATGCTCAATCAAGC
37445491 ATTATCCACT
Statistics
Matches: 153, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 11 0.07
39 139 0.91
40 3 0.02
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (39 bp):
AGTATGCTCAATCAAGCCATACCTACTGATTCTACTAAA
Found at i:37446413 original size:28 final size:30
Alignment explanation
Indices: 37446388--37446443 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
37446378 CCCTGTTTTG
37446388 AATTTTT-TTATTT-TCCCTAAATGTTTCA
1 AATTTTTCTTATTTGTCCCTAAATGTTTCA
*
37446416 AATTTTTCTTATTTGGTCTCTAAATGTT
1 AATTTTTCTTATTT-GTCCCTAAATGTT
37446444 GTAACTTACT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 7 0.29
29 6 0.25
31 11 0.46
ACGTcount: A:0.23, C:0.12, G:0.07, T:0.57
Consensus pattern (30 bp):
AATTTTTCTTATTTGTCCCTAAATGTTTCA
Found at i:37452102 original size:22 final size:23
Alignment explanation
Indices: 37452051--37452104 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
37452041 GTTTTTAATA
*
37452051 TTTGTGTATCACAATTATCGACTC
1 TTTG-GTATCACAATTATCGACCC
* *
37452075 TTTGGTATCGCAATT-TTGACCC
1 TTTGGTATCACAATTATCGACCC
37452097 TTTGGTAT
1 TTTGGTAT
37452105 TGAGAATATG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 13 0.48
23 10 0.37
24 4 0.15
ACGTcount: A:0.20, C:0.19, G:0.17, T:0.44
Consensus pattern (23 bp):
TTTGGTATCACAATTATCGACCC
Found at i:37454322 original size:19 final size:18
Alignment explanation
Indices: 37454273--37454326 Score: 67
Period size: 19 Copynumber: 3.0 Consensus size: 18
37454263 ATACACATAG
37454273 TTTTATGTGTTTTATTTT
1 TTTTATGTGTTTTATTTT
*
37454291 TTTTCT-TGTTTTATGTTAT
1 TTTTATGTGTTTTAT-TT-T
37454310 TTTTATGTG-TTTATTTT
1 TTTTATGTGTTTTATTTT
37454327 CAAATTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
17 9 0.29
18 9 0.29
19 11 0.35
20 2 0.06
ACGTcount: A:0.11, C:0.02, G:0.11, T:0.76
Consensus pattern (18 bp):
TTTTATGTGTTTTATTTT
Found at i:37460238 original size:255 final size:255
Alignment explanation
Indices: 37459787--37460297 Score: 1013
Period size: 255 Copynumber: 2.0 Consensus size: 255
37459777 AAAACAATGC
37459787 GACCCAACATAACCAAAGTTCAAACCATAAATTTCAGTAAAAAGAAAAAGTAAAAGAAAACAAAC
1 GACCCAACATAACCAAAGTTCAAACCATAAATTTCAGTAAAAAGAAAAAGTAAAAGAAAACAAAC
37459852 AGTAAGATTTTATTTTAGAAAAAGATGTAATGGGTCCCACTTCGGACGTAGAAGCTGAACCATGA
66 AGTAAGATTTTATTTTAGAAAAAGATGTAATGGGTCCCACTTCGGACGTAGAAGCTGAACCATGA
37459917 TGGGAAACGTCTTCTGTTTTTGTTTTAGAAATAAAAAATAATAAAGCAAGTAGGAACCAATCACC
131 TGGGAAACGTCTTCTGTTTTTGTTTTAGAAATAAAAAATAATAAAGCAAGTAGGAACCAATCACC
37459982 GACTGAATTGCGACCCACATGAGCCAAGATGGCCAAACACGTGTCACGTGCCTTAATTGA
196 GACTGAATTGCGACCCACATGAGCCAAGATGGCCAAACACGTGTCACGTGCCTTAATTGA
37460042 GACCCAACATAACCAAAGTTCAAACCATAAATTTCAGTAAAAAGAAAAAGTAAAAGAAAACAAAC
1 GACCCAACATAACCAAAGTTCAAACCATAAATTTCAGTAAAAAGAAAAAGTAAAAGAAAACAAAC
37460107 AGTAAGATTTTATTTTAGAAAAAGATGTAATGGGTCCCACTTCGGACGTAGAAGCTGAACCATGA
66 AGTAAGATTTTATTTTAGAAAAAGATGTAATGGGTCCCACTTCGGACGTAGAAGCTGAACCATGA
37460172 TGGGAAACGTCTTCTGTTTTTGTTTTAGAAATAAAAAATAATAAAGCAAGTAGGAACCAATCACC
131 TGGGAAACGTCTTCTGTTTTTGTTTTAGAAATAAAAAATAATAAAGCAAGTAGGAACCAATCACC
*
37460237 GACTGAATTGCGACCCACATGAGCCAAGGTGGCCAAACACGTGTCACGTGCCTTAATTGA
196 GACTGAATTGCGACCCACATGAGCCAAGATGGCCAAACACGTGTCACGTGCCTTAATTGA
37460297 G
1 G
37460298 TTAACATGCT
Statistics
Matches: 255, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
255 255 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23
Consensus pattern (255 bp):
GACCCAACATAACCAAAGTTCAAACCATAAATTTCAGTAAAAAGAAAAAGTAAAAGAAAACAAAC
AGTAAGATTTTATTTTAGAAAAAGATGTAATGGGTCCCACTTCGGACGTAGAAGCTGAACCATGA
TGGGAAACGTCTTCTGTTTTTGTTTTAGAAATAAAAAATAATAAAGCAAGTAGGAACCAATCACC
GACTGAATTGCGACCCACATGAGCCAAGATGGCCAAACACGTGTCACGTGCCTTAATTGA
Found at i:37466868 original size:70 final size:71
Alignment explanation
Indices: 37466739--37466876 Score: 215
Period size: 70 Copynumber: 2.0 Consensus size: 71
37466729 ACAATCCAAC
* * * *
37466739 TCAACAATAATGTCGTGAAAGTCCAAATCCCTAATTATCTTGAGGAGGTTGACAATAGTAAGTGC
1 TCAACAATAATATCGTGAAAGTCCAAATCCATAACTATCTTGAAGAGGTTGACAATAGTAAGTGC
37466804 CTCGAT
66 CTCGAT
* *
37466810 TCAACAATAATATCTTGAAAGTCTAAAT-CATAACTATCTTGAAGAGGTTGACAATAGTAAGTGC
1 TCAACAATAATATCGTGAAAGTCCAAATCCATAACTATCTTGAAGAGGTTGACAATAGTAAGTGC
37466874 CTC
66 CTC
37466877 AATTGAAAGA
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
70 36 0.59
71 25 0.41
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.29
Consensus pattern (71 bp):
TCAACAATAATATCGTGAAAGTCCAAATCCATAACTATCTTGAAGAGGTTGACAATAGTAAGTGC
CTCGAT
Found at i:37467131 original size:16 final size:15
Alignment explanation
Indices: 37467110--37467139 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
37467100 GAAGACATTA
37467110 TCATTATTATTTTCGG
1 TCATTATT-TTTTCGG
37467126 TCATTATTTTTTCG
1 TCATTATTTTTTCG
37467140 CTAAATAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.17, C:0.13, G:0.10, T:0.60
Consensus pattern (15 bp):
TCATTATTTTTTCGG
Found at i:37473165 original size:25 final size:25
Alignment explanation
Indices: 37473127--37473175 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
37473117 ATTTCCTATC
37473127 GTTTTTTTGCTTCTTCT-TTCTTTT
1 GTTTTTTTGCTTCTTCTCTTCTTTT
* *
37473151 GTTTTTTTTCATTCTTTTCTTCTTT
1 GTTTTTTTGC-TTCTTCTCTTCTTT
37473176 CTCTTTGCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 9 0.43
25 6 0.29
26 6 0.29
ACGTcount: A:0.02, C:0.16, G:0.06, T:0.76
Consensus pattern (25 bp):
GTTTTTTTGCTTCTTCTCTTCTTTT
Found at i:37473201 original size:36 final size:30
Alignment explanation
Indices: 37473137--37473207 Score: 79
Period size: 30 Copynumber: 2.2 Consensus size: 30
37473127 GTTTTTTTGC
*
37473137 TTCTTCTTTCTTTTGTTTTTTTTCATTCTT
1 TTCTTCTTTCTTTTGTTTTTTTTCATTCTA
37473167 TTCTTCTTTCTCTTTGCTTTATTGGTTTCAATTCTA
1 TTCTTCTTTCT-TTTG-TTT-TT--TTTC-ATTCTA
37473203 TTCTT
1 TTCTT
37473208 TTTTTCTACT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
30 11 0.32
31 4 0.12
32 3 0.09
33 2 0.06
35 4 0.12
36 10 0.29
ACGTcount: A:0.07, C:0.18, G:0.06, T:0.69
Consensus pattern (30 bp):
TTCTTCTTTCTTTTGTTTTTTTTCATTCTA
Found at i:37474058 original size:21 final size:21
Alignment explanation
Indices: 37474014--37474091 Score: 84
Period size: 21 Copynumber: 3.7 Consensus size: 21
37474004 ATAATATGTT
* *
37474014 ATATGATTAGTATGATCTAAA
1 ATATGATAAGTATGATCTGAA
* *
37474035 ATATGATAAGTATGATTTGTA
1 ATATGATAAGTATGATCTGAA
* * * *
37474056 ATATGACATGTATAATCTGCA
1 ATATGATAAGTATGATCTGAA
37474077 ATATGATAAGTATGA
1 ATATGATAAGTATGA
37474092 CCTGTTATTC
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.37
Consensus pattern (21 bp):
ATATGATAAGTATGATCTGAA
Found at i:37478850 original size:14 final size:15
Alignment explanation
Indices: 37478821--37478960 Score: 67
Period size: 16 Copynumber: 9.1 Consensus size: 15
37478811 ATTAGTAAAA
37478821 AAGAATATATACATAAT
1 AAGAATATAT--ATAAT
37478838 AA-AATATATATAA-
1 AAGAATATATATAAT
37478851 AAGAATATATA-AGA-
1 AAGAATATATATA-AT
* *
37478865 AA-AATAAATATTAT
1 AAGAATATATATAAT
*
37478879 AAGGAATGTTATATAAT
1 AA-GAAT-ATATATAAT
*
37478896 AAGATATAGTATGTAAT
1 AAGA-ATA-TATATAAT
*
37478913 AA-AATATAAATAAT
1 AAGAATATATATAAT
* * *
37478927 TATAATGAAATATAAT
1 AAGAAT-ATATATAAT
* *
37478943 ATGGTATATATATAAT
1 A-AGAATATATATAAT
37478959 AA
1 AA
37478961 TAGTAATAAT
Statistics
Matches: 93, Mismatches: 18, Indels: 26
0.68 0.13 0.19
Matches are distributed among these distances:
13 11 0.12
14 24 0.26
15 6 0.06
16 29 0.31
17 23 0.25
ACGTcount: A:0.58, C:0.01, G:0.09, T:0.33
Consensus pattern (15 bp):
AAGAATATATATAAT
Found at i:37478860 original size:16 final size:16
Alignment explanation
Indices: 37478819--37478861 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 16
37478809 TAATTAGTAA
37478819 AAAAGAATATATACAT
1 AAAAGAATATATACAT
37478835 AATAA-AATATAT--AT
1 AA-AAGAATATATACAT
37478849 AAAAGAATATATA
1 AAAAGAATATATA
37478862 AGAAAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
13 2 0.08
14 11 0.46
16 9 0.38
17 2 0.08
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (16 bp):
AAAAGAATATATACAT
Found at i:37480957 original size:206 final size:206
Alignment explanation
Indices: 37480584--37481374 Score: 1170
Period size: 206 Copynumber: 3.8 Consensus size: 206
37480574 GAGATGCCTT
* * * * *
37480584 CTTCGATTTATTCTTTGACAATACAGAGATGTCAAATCATCTTAGATTTGCTTTAGCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
37480649 GTGAAAGCTAAATCAGCTATGAT-TTCTATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTATG-TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCT
* * ** *
37480713 TGGATCTACTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTACTCTCCGTCAAATAT
130 TGGATCTACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCAAATAT
37480778 GGAGACGCCAAA
195 GGAGACGCCAAA
* * * * *
37480790 CTTCAATTTGTTCTCTAACAATACAAAGATGCCAAATCATCTTAGATTTTCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
37480855 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCTAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* *
37480920 GGATCTGCTTCAGTATAAACATCTGAAAGCCAGATCTGCTATGTGTCTGCTCTCCGTCAAATATG
131 GGATCTACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCAAATATG
37480985 GAGACGCCAAA
196 GAGACGCCAAA
* *
37480996 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTACTTTAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * *
37481061 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTTCTTATAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* ** * *
37481126 GGATCTACTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCAAATATG
*
37481191 GAGTCGCCAAA
196 GAGACGCCAAA
* * * *
37481202 CTTTGATTTGTTCTCTGACAATATAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
37481267 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGTACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* * * * *
37481332 GGATCTGCTTCAATACAAGCATCTGAAGGCCAGATCTGTTATG
131 GGATCTACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATG
37481375 CCACAGCCTA
Statistics
Matches: 525, Mismatches: 59, Indels: 2
0.90 0.10 0.00
Matches are distributed among these distances:
205 1 0.00
206 524 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
GGATCTACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCAAATATG
GAGACGCCAAA
Found at i:37492963 original size:28 final size:28
Alignment explanation
Indices: 37492932--37493010 Score: 76
Period size: 28 Copynumber: 2.9 Consensus size: 28
37492922 TATGAAAGTG
*
37492932 TATATATATAA-AAAT-AATATATAATA
1 TATATAAATAATAAATAAATATATAATA
*
37492958 TATATAAATAATTAATAAATATATAATA
1 TATATAAATAATAAATAAATATATAATA
* *
37492986 CA-AGTAAA-AATATAATAATTATATA
1 TATA-TAAATAATA-AATAAATATATA
37493011 TAAATAATAA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 10 0.23
27 7 0.16
28 27 0.61
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.37
Consensus pattern (28 bp):
TATATAAATAATAAATAAATATATAATA
Found at i:37492975 original size:11 final size:12
Alignment explanation
Indices: 37492945--37493082 Score: 69
Period size: 12 Copynumber: 11.2 Consensus size: 12
37492935 ATATATAAAA
*
37492945 ATAATATATAAT
1 ATAATAAATAAT
37492957 ATATATAAATAAT
1 ATA-ATAAATAAT
37492970 -TAATAAAT-AT
1 ATAATAAATAAT
37492980 ATAATACAAGTAA-
1 ATAATA-AA-TAAT
37492993 A-AATATAATAATT
1 ATAATA-AATAA-T
37493006 ATATATAAATAAT
1 ATA-ATAAATAAT
*
37493019 A-ATGTAAAATAAT
1 ATA-AT-AAATAAT
*
37493032 AATAAT-AAT-TT
1 -ATAATAAATAAT
*
37493043 GTGAA-AAATAAT
1 AT-AATAAATAAT
37493055 ATAATAAATAAT
1 ATAATAAATAAT
37493067 A-ATATGAAATAAT
1 ATA-AT-AAATAAT
37493080 ATA
1 ATA
37493083 TTGTTAAAAT
Statistics
Matches: 99, Mismatches: 8, Indels: 36
0.69 0.06 0.25
Matches are distributed among these distances:
10 3 0.03
11 23 0.23
12 31 0.31
13 28 0.28
14 10 0.10
15 4 0.04
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.35
Consensus pattern (12 bp):
ATAATAAATAAT
Found at i:37493078 original size:13 final size:13
Alignment explanation
Indices: 37492939--37493080 Score: 60
Period size: 13 Copynumber: 11.5 Consensus size: 13
37492929 GTGTATATAT
* *
37492939 ATAAAAATAATAT
1 ATAATAATAATAA
37492952 ATAAT-ATATATAA
1 ATAATAATA-ATAA
37492965 ATAAT--TAATAA
1 ATAATAATAATAA
37492976 AT-AT-ATAATACA
1 ATAATAATAATA-A
*
37492988 AGTAAAAAT-AT-A
1 A-TAATAATAATAA
*
37493000 ATAATTATATATAA
1 ATAATAATA-ATAA
*
37493014 ATAATAAT-GT-A
1 ATAATAATAATAA
37493025 A-AATAATAAT-A
1 ATAATAATAATAA
**
37493036 ATAATTTGTGAA-AA
1 ATAA-TAAT-AATAA
37493050 ATAAT-ATAATAA
1 ATAATAATAATAA
37493062 ATAATAAT-ATGAA
1 ATAATAATAAT-AA
37493075 ATAATA
1 ATAATA
37493081 TATTGTTAAA
Statistics
Matches: 101, Mismatches: 11, Indels: 34
0.69 0.08 0.23
Matches are distributed among these distances:
10 8 0.08
11 23 0.23
12 22 0.22
13 28 0.28
14 18 0.18
15 2 0.02
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.34
Consensus pattern (13 bp):
ATAATAATAATAA
Found at i:37493083 original size:12 final size:11
Alignment explanation
Indices: 37492937--37493083 Score: 63
Period size: 11 Copynumber: 12.5 Consensus size: 11
37492927 AAGTGTATAT
*
37492937 ATATAAAAATA
1 ATATATAAATA
37492948 ATATAT-AAT-
1 ATATATAAATA
37492957 ATATATAAATA
1 ATATATAAATA
37492968 AT-TAATAAAT-
1 ATAT-ATAAATA
37492978 ATATAATACAAGTAA
1 ATAT-ATA-AA-T-A
* *
37492993 AAATATAATAATT
1 ATATAT-A-AATA
37493006 ATATATAAATA
1 ATATATAAATA
*
37493017 ATAATGTAAAATA
1 AT-ATAT-AAATA
37493030 ATA-AT-AATA
1 ATATATAAATA
* *
37493039 ATTTGTGAAAAATA
1 A--TAT-ATAAATA
37493053 ATATAATAAATA
1 ATAT-ATAAATA
37493065 ATAATATGAAATA
1 AT-ATAT-AAATA
37493078 ATATAT
1 ATATAT
37493084 TGTTAAAATG
Statistics
Matches: 105, Mismatches: 13, Indels: 35
0.69 0.08 0.23
Matches are distributed among these distances:
9 11 0.10
10 9 0.09
11 25 0.24
12 23 0.22
13 23 0.22
14 8 0.08
15 6 0.06
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (11 bp):
ATATATAAATA
Found at i:37495691 original size:27 final size:27
Alignment explanation
Indices: 37495643--37495801 Score: 157
Period size: 27 Copynumber: 5.9 Consensus size: 27
37495633 GCGAGGCTGC
* *
37495643 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
37495670 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
37495696 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * * *
37495723 CAGATAATCGTGGCATAACCACCATA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
* *
37495750 CAGATATATATGGTAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
37495777 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
37495802 GACGCTTCCT
Statistics
Matches: 109, Mismatches: 15, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
26 10 0.09
27 94 0.86
28 5 0.05
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:37495736 original size:54 final size:54
Alignment explanation
Indices: 37495661--37495801 Score: 212
Period size: 54 Copynumber: 2.6 Consensus size: 54
37495651 GTGACGAAGT
* *
37495661 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATATGGCAGAGC
* * * *
37495715 CACCAGATCAGATAATCGTGGCATAACCACCATAACAGATATATATGGTAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATATGGCAGAGC
37495769 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
37495802 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
53 5 0.06
54 72 0.94
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATATGGCAGAGC
Found at i:37495969 original size:28 final size:26
Alignment explanation
Indices: 37495907--37495969 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
37495897 AAAGTAACCC
** * *
37495907 TAGGGGTATAATGGTAATTTTGCACC
1 TAGGGGTATAACAGTAATTTTCCACA
37495933 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTTCC--ACA
37495961 TAGGGGTAT
1 TAGGGGTAT
37495970 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 20 0.65
28 11 0.35
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.33
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTCCACA
Found at i:37497440 original size:26 final size:26
Alignment explanation
Indices: 37497409--37497515 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
37497399 TGAAATGCCC
*
37497409 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
37497435 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
37497461 ATCATGGAATATTTACC-AATCCATT
1 ATCATGGAACATTTACCTAACCCATT
37497486 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
37497512 ATCA
1 ATCA
37497516 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
25 23 0.31
26 52 0.69
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:37497496 original size:51 final size:52
Alignment explanation
Indices: 37497409--37497515 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 52
37497399 TGAAATGCCC
37497409 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
* *
37497461 ATCATGGAATATTTACC-AATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
37497512 ATCA
1 ATCA
37497516 ATTTGTACCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 37 0.70
52 16 0.30
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:37501009 original size:39 final size:38
Alignment explanation
Indices: 37500871--37501008 Score: 168
Period size: 39 Copynumber: 3.6 Consensus size: 38
37500861 AACATGTTTT
* *
37500871 TGAGTATTGCGACATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTG-ATGTTATGTGATTATA
* * * *
37500910 TAAGTATTGTGATATGTGCTTGACCGTTATGTAATTATA
1 TGAGTATTGTGATATATGCTTGA-TGTTATGTGATTATA
*
37500949 TGAGTATTTTGATATATGCTTAGATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTT-GATGTTATGTGATTATA
* *
37500988 TGTGTAATGTGATATATGCTT
1 TGAGTATTGTGATATATGCTT
37501009 AAAAGTGGAT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
38 1 0.01
39 80 0.96
40 2 0.02
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.45
Consensus pattern (38 bp):
TGAGTATTGTGATATATGCTTGATGTTATGTGATTATA
Found at i:37503625 original size:48 final size:48
Alignment explanation
Indices: 37503553--37503650 Score: 151
Period size: 48 Copynumber: 2.0 Consensus size: 48
37503543 CATGAATAAT
* *
37503553 AATGGGTAGTTTAGTTTTTTACAAAAACAAACAAATAATTTTAATTGA
1 AATGGATAGTTTAGTTTTTGACAAAAACAAACAAATAATTTTAATTGA
* **
37503601 AATGGATATTTTAGTTTTTGACAAAAACAAATGAATAATTTTAATTGA
1 AATGGATAGTTTAGTTTTTGACAAAAACAAACAAATAATTTTAATTGA
37503649 AA
1 AA
37503651 AAAATATTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (48 bp):
AATGGATAGTTTAGTTTTTGACAAAAACAAACAAATAATTTTAATTGA
Found at i:37503658 original size:48 final size:48
Alignment explanation
Indices: 37503562--37503660 Score: 144
Period size: 48 Copynumber: 2.1 Consensus size: 48
37503552 TAATGGGTAG
* ***
37503562 TTTAGTTTTTTACAAAAACAAACAAATAATTTTAATTGAAATGGATAT
1 TTTAGTTTTTGACAAAAACAAACAAATAATTTTAATTGAAAAAAATAT
**
37503610 TTTAGTTTTTGACAAAAACAAATGAATAATTTTAATTGAAAAAAATAT
1 TTTAGTTTTTGACAAAAACAAACAAATAATTTTAATTGAAAAAAATAT
37503658 TTT
1 TTT
37503661 TTCTCTTATA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.40
Consensus pattern (48 bp):
TTTAGTTTTTGACAAAAACAAACAAATAATTTTAATTGAAAAAAATAT
Found at i:37518689 original size:46 final size:46
Alignment explanation
Indices: 37518596--37518809 Score: 204
Period size: 46 Copynumber: 4.6 Consensus size: 46
37518586 GTATAATGCT
* * *
37518596 GATGCCATGTCCCAGACATGGTCTTACATTGACAC-C-TCTCGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCG-AGGCC
* *
37518642 GATGCATGTCTCAAACATGTCTTACACTGGCT-TACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAGGCC
* * * * * *
37518688 GATGCATGTCCCAGACATATCTTACACTAGCTCTCGTCTCAATGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCC
* * *
37518734 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAGGCC
37518782 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
37518810 AGCACACAAA
Statistics
Matches: 140, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 62 0.44
47 29 0.21
48 23 0.16
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCC
Found at i:37518767 original size:94 final size:92
Alignment explanation
Indices: 37518642--37518812 Score: 238
Period size: 94 Copynumber: 1.8 Consensus size: 92
37518632 TCTCGTAGCC
* *
37518642 GATGCATGTCTCAAACATGTCTTACACTGGCT-TACAT-CTCGAGGCCGATGCATGTCCCAGACA
1 GATGCATGTCCCAAACATGTCTTACACTGGCTCT-CATAAT-GAGGCCGATGCATGTCCCAGACA
37518705 TATCTTACACTAGCTCTCGTCTCAATGCT
64 TATCTTACACTAGCTCTCGTCTCAATGCT
* * *
37518734 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCAGACA
1 GATG-CATGTCCCAAACAT-GTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGACA
*
37518799 TGTCTTACACTAGC
64 TATCTTACACTAGC
37518813 ACACAAATAA
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
92 4 0.06
93 12 0.17
94 51 0.74
95 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (92 bp):
GATGCATGTCCCAAACATGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGACATA
TCTTACACTAGCTCTCGTCTCAATGCT
Found at i:37546318 original size:15 final size:16
Alignment explanation
Indices: 37546298--37546327 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37546288 AACAAAAAAA
37546298 ATCTTT-TATTAAATT
1 ATCTTTATATTAAATT
37546313 ATCTTTATATTAAAT
1 ATCTTTATATTAAAT
37546328 CGTTTAGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (16 bp):
ATCTTTATATTAAATT
Found at i:37551970 original size:21 final size:21
Alignment explanation
Indices: 37551944--37551995 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
37551934 TCACTTTATT
37551944 TCTTTTTGTCCAAGGTACTTC
1 TCTTTTTGTCCAAGGTACTTC
* *
37551965 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGGTACTTC
37551986 TCTTTTTGTC
1 TCTTTTTGTC
37551996 TAACTCACTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.10, C:0.23, G:0.13, T:0.54
Consensus pattern (21 bp):
TCTTTTTGTCCAAGGTACTTC
Found at i:37552006 original size:21 final size:21
Alignment explanation
Indices: 37551944--37552012 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
37551934 TCACTTTATT
*
37551944 TCTTTTTGTCCAAGGT-ACTTC
1 TCTTTTTGTCCAA-CTCACTTC
* **
37551965 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAACTCACTTC
*
37551986 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAACTCACTTC
37552007 -CTTTTT
1 TCTTTTT
37552013 TCTTTGTGAG
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
20 8 0.19
21 34 0.81
ACGTcount: A:0.12, C:0.25, G:0.10, T:0.54
Consensus pattern (21 bp):
TCTTTTTGTCCAACTCACTTC
Found at i:37555706 original size:21 final size:22
Alignment explanation
Indices: 37555677--37555722 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
37555667 GAACATACAG
*
37555677 AATAGCTTTAATT-TTTAATT-A
1 AATAACTTT-ATTATTTAATTCA
37555698 AATAACTTTATTATTTAATTCA
1 AATAACTTTATTATTTAATTCA
37555720 AAT
1 AAT
37555723 GTACATTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 3 0.14
21 15 0.68
22 4 0.18
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.50
Consensus pattern (22 bp):
AATAACTTTATTATTTAATTCA
Found at i:37557386 original size:47 final size:47
Alignment explanation
Indices: 37557335--37557467 Score: 155
Period size: 48 Copynumber: 2.8 Consensus size: 47
37557325 AGTGATAATT
*
37557335 TTAAATTTTCAATACTATTGATATTTTTTTAATTTATGCAAATT-TAA
1 TTAAATTTTCAATACTATTGATATTTTTTTCATTTATGC-AATTATAA
* * * *
37557382 TTAAATTTGCAATATTATTTGATATTTTATTCATTTATACAATTATAA
1 TTAAATTTTCAATACTA-TTGATATTTTTTTCATTTATGCAATTATAA
*
37557430 TTACAA-TTTCAATACTGCTTGAT-TTTTTTTCATTTATG
1 TTA-AATTTTCAATACT-ATTGATATTTTTTTCATTTATG
37557468 ATGTTTGCAT
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
47 32 0.44
48 38 0.53
49 2 0.03
ACGTcount: A:0.33, C:0.08, G:0.05, T:0.53
Consensus pattern (47 bp):
TTAAATTTTCAATACTATTGATATTTTTTTCATTTATGCAATTATAA
Found at i:37558437 original size:7 final size:7
Alignment explanation
Indices: 37558417--37558452 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
37558407 TTAAATAAAA
37558417 TAGTCATT
1 TAGT-ATT
*
37558425 TCGTATT
1 TAGTATT
37558432 TAGTATT
1 TAGTATT
37558439 TAGTATT
1 TAGTATT
37558446 TAGTATT
1 TAGTATT
37558453 ATGTATTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 23 0.88
8 3 0.12
ACGTcount: A:0.25, C:0.06, G:0.14, T:0.56
Consensus pattern (7 bp):
TAGTATT
Found at i:37558458 original size:14 final size:15
Alignment explanation
Indices: 37558427--37558469 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
37558417 TAGTCATTTC
37558427 GTATTTAGTATT-TA
1 GTATTTAGTATTATA
37558441 GTATTTAGTATTAT-
1 GTATTTAGTATTATA
37558455 GTA-TTATGTATTATA
1 GTATTTA-GTATTATA
37558470 TATATAAGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 3 0.12
14 22 0.85
15 1 0.04
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.56
Consensus pattern (15 bp):
GTATTTAGTATTATA
Found at i:37559076 original size:18 final size:18
Alignment explanation
Indices: 37559053--37559095 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
37559043 TGTCAGGTGC
*
37559053 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
37559071 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
37559089 GTTTCCT
1 GTATCCT
37559096 TTTCCTAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.28, G:0.09, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:37563352 original size:11 final size:11
Alignment explanation
Indices: 37563336--37563378 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
37563326 TAAAAACATT
37563336 TATTTTATTAA
1 TATTTTATTAA
**
37563347 TATTTTATTTC
1 TATTTTATTAA
37563358 TAATTTTATTAA
1 T-ATTTTATTAA
37563370 TATTTTATT
1 TATTTTATT
37563379 TCTAACCTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:37563363 original size:23 final size:23
Alignment explanation
Indices: 37563337--37563383 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
37563327 AAAAACATTT
37563337 ATTTTATTAATATTTTATTTCTA
1 ATTTTATTAATATTTTATTTCTA
37563360 ATTTTATTAATATTTTATTTCTA
1 ATTTTATTAATATTTTATTTCTA
37563383 A
1 A
37563384 CCTACTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (23 bp):
ATTTTATTAATATTTTATTTCTA
Found at i:37566351 original size:175 final size:172
Alignment explanation
Indices: 37566106--37566457 Score: 591
Period size: 175 Copynumber: 2.0 Consensus size: 172
37566096 ACCATGGCCA
* *
37566106 CCAATGACTCCACTCCGTTGGAAAGAGGATTGATCTTGAAAAAAAAGGTCAATTATCGCATGCAA
1 CCAATGACTCCACTCCGTTGGAAAGAGGATTGATCTTAAAAAAAAAGGTCAATTATCACATGCAA
*
37566171 CAACTTAAATCAAGCCAAACAACAATCTAAGTCCAATGCACAAAAAATGTTTTGACTCACACAGT
66 CAACTTAAATCAAGCCAAACAACAACCTAAGTCCAATGCACAAAAAATGTTTTGACTCACACAGT
* *
37566236 AGGAAGACAATAGCAATGAGGAAAAGTAAAGACCTAACACTC
131 AGGAAGACAATAGCAATGAGGAAAAGTAAAAACCCAACACTC
37566278 CCAATGACT-CACTCCGTTGGAAAGAGGATTGAT-TTCAAAAAAAAAAAAAGGTCAATTATCACA
1 CCAATGACTCCACTCCGTTGGAAAGAGGATTGATCTT-----AAAAAAAAAGGTCAATTATCACA
37566341 TGCAACAACTTAAATCAAGCCAAACAACAACCTAAGTCCAATGCACAAAAAATGTTTTGACTCAC
61 TGCAACAACTTAAATCAAGCCAAACAACAACCTAAGTCCAATGCACAAAAAATGTTTTGACTCAC
37566406 ACAGTAGGAAGACAATAGCAATGAGGAAAAGTAAAAACCCAACACTC
126 ACAGTAGGAAGACAATAGCAATGAGGAAAAGTAAAAACCCAACACTC
*
37566453 TCAAT
1 CCAAT
37566458 CCTAAGCATT
Statistics
Matches: 169, Mismatches: 6, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
170 2 0.01
171 24 0.14
172 9 0.05
175 134 0.79
ACGTcount: A:0.45, C:0.21, G:0.15, T:0.19
Consensus pattern (172 bp):
CCAATGACTCCACTCCGTTGGAAAGAGGATTGATCTTAAAAAAAAAGGTCAATTATCACATGCAA
CAACTTAAATCAAGCCAAACAACAACCTAAGTCCAATGCACAAAAAATGTTTTGACTCACACAGT
AGGAAGACAATAGCAATGAGGAAAAGTAAAAACCCAACACTC
Done.