Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 112 of 167
Found at i:37583712 original size:50 final size:50
Alignment explanation
Indices: 37583633--37583874 Score: 250
Period size: 50 Copynumber: 4.8 Consensus size: 50
37583623 CAAAGCTCTT
* * * * *
37583633 TGGTACACATAGCAGCATGCGCTTAGTACTACACATGCGATCTAACATTC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACATTC
* * * * * *
37583683 TGGTACACGTAGTAGCCTGCACGTAGTACTACACACGTGATCGAAGATATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAT-TC
* ** *
37583734 GGGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACATTC
* * **
37583784 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCGTC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACATTC
*** *
37583836 TTAAACACATAGTAGCCTGCACATAGTACTACACATGTG
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTG
37583875 TTCTCATAAC
Statistics
Matches: 157, Mismatches: 32, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
50 79 0.50
51 40 0.25
52 38 0.24
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (50 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACATTC
Found at i:37583788 original size:101 final size:101
Alignment explanation
Indices: 37583640--37583823 Score: 305
Period size: 101 Copynumber: 1.8 Consensus size: 101
37583630 CTTTGGTACA
* * *
37583640 CATAGCAGCATGCGCTTAGTACTACACATGCGATCTAACATTCTGGTACACGTAGTAGCCTGCAC
1 CATAGCAGCATGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCAC
37583705 GTAGTACTACACACGTGATCGAAGATATCGGGTATG
66 GTAGTACTACACACGTGATCGAAGATATCGGGTATG
* * *
37583741 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACGTAGTAGCCTGCAC
1 CATAGCAGCATGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCAC
*
37583806 TTAGTACTACACACGTGA
66 GTAGTACTACACACGTGA
37583824 CCTAAAACCG
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
101 76 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (101 bp):
CATAGCAGCATGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCAC
GTAGTACTACACACGTGATCGAAGATATCGGGTATG
Found at i:37587425 original size:16 final size:17
Alignment explanation
Indices: 37587391--37587426 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
37587381 TTTCTCCTTC
37587391 TCTGTTTCGTTTTCAAT
1 TCTGTTTCGTTTTCAAT
*
37587408 TCTGTTTC-TTTTCCAT
1 TCTGTTTCGTTTTCAAT
37587424 TCT
1 TCT
37587427 TTTTTGCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.08, C:0.22, G:0.08, T:0.61
Consensus pattern (17 bp):
TCTGTTTCGTTTTCAAT
Found at i:37587481 original size:5 final size:5
Alignment explanation
Indices: 37587473--37587510 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
37587463 TTATTAAAAT
37587473 AATAA AATAA AATAA AATAA AATAA AATAA AA-AA AATA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATA
37587511 TATTTATACT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.12
5 28 0.88
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AATAA
Found at i:37594574 original size:50 final size:49
Alignment explanation
Indices: 37594424--37594584 Score: 154
Period size: 50 Copynumber: 3.3 Consensus size: 49
37594414 AACTGTCATA
*
37594424 ACATGGTCTTACACTAGCTCATC-C-ATCAAGT--CGATGCCATGTCCCAG
1 ACATGGTCTTACACTAGCTC-TCACAATC-CGTGCCGATGCCATGTCCCAG
* * * * * * *
37594471 ACATGGTCTTGCA-TTGACTATCAAAAT-CGAGGCCGAAGACATGTCCCAG
1 ACATGGTCTTACACTAG-CTCTCACAATCCG-TGCCGATGCCATGTCCCAG
37594520 ACATGGTCTTACACTAGCTCTCACATATCCGTGCCGATGCCATGTCCCAG
1 ACATGGTCTTACACTAGCTCTCACA-ATCCGTGCCGATGCCATGTCCCAG
*
37594570 ACATGGTTTTACACT
1 ACATGGTCTTACACT
37594585 GACACATCTC
Statistics
Matches: 89, Mismatches: 16, Indels: 15
0.74 0.13 0.12
Matches are distributed among these distances:
46 5 0.06
47 14 0.16
48 2 0.02
49 32 0.36
50 34 0.38
51 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (49 bp):
ACATGGTCTTACACTAGCTCTCACAATCCGTGCCGATGCCATGTCCCAG
Found at i:37605835 original size:12 final size:12
Alignment explanation
Indices: 37605818--37605844 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
37605808 GATGTGGGTC
37605818 TCTTGACCATTT
1 TCTTGACCATTT
37605830 TCTTGACCATTT
1 TCTTGACCATTT
37605842 TCT
1 TCT
37605845 CAGAGATTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.26, G:0.07, T:0.52
Consensus pattern (12 bp):
TCTTGACCATTT
Found at i:37610561 original size:27 final size:27
Alignment explanation
Indices: 37610521--37610676 Score: 240
Period size: 27 Copynumber: 5.8 Consensus size: 27
37610511 ACGTACCTGA
*
37610521 GCCTTCATGTGATAAAATGACGATTTT
1 GCCTTTATGTGATAAAATGACGATTTT
* * *
37610548 GCCCTTGTGTGATAAAATGACAATTTT
1 GCCTTTATGTGATAAAATGACGATTTT
* * *
37610575 GCCCTTATATGATAAAATGACAATTTT
1 GCCTTTATGTGATAAAATGACGATTTT
37610602 GCCTTTATGTGATAAAATGACGATTTT
1 GCCTTTATGTGATAAAATGACGATTTT
*
37610629 GCCTTTATGTGATAAAATGGCGATTTT
1 GCCTTTATGTGATAAAATGACGATTTT
37610656 GCCTTTATGTGATAAAATGAC
1 GCCTTTATGTGATAAAATGAC
37610677 CGAAATACCT
Statistics
Matches: 118, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (27 bp):
GCCTTTATGTGATAAAATGACGATTTT
Found at i:37610687 original size:27 final size:27
Alignment explanation
Indices: 37610603--37610739 Score: 93
Period size: 27 Copynumber: 5.1 Consensus size: 27
37610593 GACAATTTTG
** *
37610603 CCTTTATGTGATAAAATGA-CGATTTTG
1 CCTTTATGTGATAAAATGACCGA-AATA
* ** *
37610630 CCTTTATGTGATAAAATG-GCGATTTTG
1 CCTTTATGTGATAAAATGACCGA-AATA
37610657 CCTTTATGTGATAAAATGACCGAAATA
1 CCTTTATGTGATAAAATGACCGAAATA
* * *
37610684 CCTTCATAG-GGTAAAATGACTGAAATA
1 CCTTTAT-GTGATAAAATGACCGAAATA
** *
37610711 CCTCCATAG-GATAGAATGACCGAAATA
1 CCTTTAT-GTGATAAAATGACCGAAATA
37610738 CC
1 CC
37610740 CCTGTAGGGT
Statistics
Matches: 96, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
27 92 0.96
28 4 0.04
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (27 bp):
CCTTTATGTGATAAAATGACCGAAATA
Found at i:37610699 original size:54 final size:54
Alignment explanation
Indices: 37610522--37610703 Score: 181
Period size: 54 Copynumber: 3.4 Consensus size: 54
37610512 CGTACCTGAG
* * * * ** *
37610522 CCTTCATGTGATAAAATGACGATTTTGCCCTTGTGTGATAAAATGACAATTTTGC
1 CCTTCATGTGATAAAATGACAATTTTGCCTTTATGTGATAAAATGACGATAAT-A
* ** *
37610577 CCTT-ATATGATAAAATGACAATTTTGCCTTTATGTGATAAAATGACGATTTTG
1 CCTTCATGTGATAAAATGACAATTTTGCCTTTATGTGATAAAATGACGATAATA
* * *
37610630 CCTTTATGTGATAAAATGGCGATTTTGCCTTTATGTGATAAAATGACCGA-AATA
1 CCTTCATGTGATAAAATGACAATTTTGCCTTTATGTGATAAAATGA-CGATAATA
*
37610684 CCTTCATAG-GGTAAAATGAC
1 CCTTCAT-GTGATAAAATGAC
37610704 TGAAATACCT
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
53 4 0.04
54 97 0.89
55 8 0.07
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (54 bp):
CCTTCATGTGATAAAATGACAATTTTGCCTTTATGTGATAAAATGACGATAATA
Found at i:37610699 original size:81 final size:80
Alignment explanation
Indices: 37610522--37610703 Score: 224
Period size: 81 Copynumber: 2.2 Consensus size: 80
37610512 CGTACCTGAG
*
37610522 CCTTCATGTGATAAAATGACGATTTTGCCCTTGTGTGATAAAATGACAATTTTGCCCTTATATGA
1 CCTTCATGTGATAAAATGACGATTTTGCCCTTATGTGATAAAATGACAATTTTGCCCTTATATGA
* *
37610587 TAAAATGACAATTTTG
66 TAAAATGACAA-TATA
* * * * * *
37610603 CCTTTATGTGATAAAATGACGATTTTGCCTTTATGTGATAAAATGGCGATTTTGCCTTTATGTGA
1 CCTTCATGTGATAAAATGACGATTTTGCCCTTATGTGATAAAATGACAATTTTGCCCTTATATGA
37610668 TAAAATGACCGAA-ATA
66 TAAAATGA-C-AATATA
*
37610684 CCTTCATAG-GGTAAAATGAC
1 CCTTCAT-GTGATAAAATGAC
37610704 TGAAATACCT
Statistics
Matches: 87, Mismatches: 11, Indels: 6
0.84 0.11 0.06
Matches are distributed among these distances:
81 83 0.95
82 2 0.02
83 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (80 bp):
CCTTCATGTGATAAAATGACGATTTTGCCCTTATGTGATAAAATGACAATTTTGCCCTTATATGA
TAAAATGACAATATA
Found at i:37610747 original size:27 final size:27
Alignment explanation
Indices: 37610666--37610753 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 27
37610656 GCCTTTATGT
*
37610666 GATAAAATGACCGAAATA-CCTTCATAG
1 GATAAAATGACCGAAATACCCCT-ATAG
* *
37610693 GGTAAAATGACTGAAATACCTCC-ATAG
1 GATAAAATGACCGAAATACC-CCTATAG
* *
37610720 GATAGAATGACCGAAATACCCCTGTAG
1 GATAAAATGACCGAAATACCCCTATAG
*
37610747 GGTAAAA
1 GATAAAA
37610754 GGAAAAATGA
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
26 2 0.04
27 45 0.92
28 1 0.02
29 1 0.02
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.20
Consensus pattern (27 bp):
GATAAAATGACCGAAATACCCCTATAG
Found at i:37610830 original size:22 final size:23
Alignment explanation
Indices: 37610804--37610846 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
37610794 TTTGAGCATG
37610804 CCATGT-T-ATATGTATGTTGCCT
1 CCATGTATAATAT-TATGTTGCCT
37610826 CCATGTATAATATTATGTTGC
1 CCATGTATAATATTATGTTGC
37610847 ATTGCATGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.32
23 9 0.47
24 4 0.21
ACGTcount: A:0.23, C:0.16, G:0.16, T:0.44
Consensus pattern (23 bp):
CCATGTATAATATTATGTTGCCT
Found at i:37612202 original size:12 final size:12
Alignment explanation
Indices: 37612169--37612204 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
37612159 TTGTAAGAGG
37612169 GATTTTAGGAGA
1 GATTTTAGGAGA
* *
37612181 GATATGAGGAGA
1 GATTTTAGGAGA
37612193 GATTTTAGGAGA
1 GATTTTAGGAGA
37612205 AAATTGTTGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.36, T:0.28
Consensus pattern (12 bp):
GATTTTAGGAGA
Found at i:37623596 original size:50 final size:50
Alignment explanation
Indices: 37623539--37623638 Score: 139
Period size: 50 Copynumber: 2.0 Consensus size: 50
37623529 TTTTCAAAGA
*
37623539 TAGATCTGAGATCGGGTTATTATCAGTTGCGAGT-AAAGGATTCAGACATT
1 TAGATCTGAGATCAGGTTATTATCAGTTGCGAGTAAAAGG-TTCAGACATT
* * * *
37623589 TAGATCTGATATTAGGTTATTATCATTTGTGAGTAAAAGGTTCAGACATT
1 TAGATCTGAGATCAGGTTATTATCAGTTGCGAGTAAAAGGTTCAGACATT
37623639 CCGAAAACAT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
50 39 0.89
51 5 0.11
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (50 bp):
TAGATCTGAGATCAGGTTATTATCAGTTGCGAGTAAAAGGTTCAGACATT
Found at i:37627320 original size:40 final size:40
Alignment explanation
Indices: 37627252--37627327 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
37627242 GATTATGTTC
* *
37627252 AGCACTAAGTGTGCGATTCAAAATAGCTTCGGCTATAAAT
1 AGCACTAAGTGTGCAATTCAAAACAGCTTCGGCTATAAAT
* *
37627292 AGCACTAAGTGTGCAAATT-AGAACAGCTTTGGCTAT
1 AGCACTAAGTGTGC-AATTCAAAACAGCTTCGGCTAT
37627328 GCGAGGCACT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 28 0.90
41 3 0.10
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (40 bp):
AGCACTAAGTGTGCAATTCAAAACAGCTTCGGCTATAAAT
Found at i:37629314 original size:27 final size:28
Alignment explanation
Indices: 37629275--37629350 Score: 95
Period size: 27 Copynumber: 2.8 Consensus size: 28
37629265 AACACAGAAC
37629275 CGAGATTAAGTCCATTAGGACAA-AAACA
1 CGAGA-TAAGTCCATTAGGACAATAAACA
* *
37629303 CGAGATAAGTCCGTCAGGACAATAAACA
1 CGAGATAAGTCCATTAGGACAATAAACA
*
37629331 CG-GGTAAGTCCATT-GGACAA
1 CGAGATAAGTCCATTAGGACAA
37629351 GATAAAAAAG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.14
27 24 0.57
28 12 0.29
ACGTcount: A:0.41, C:0.20, G:0.22, T:0.17
Consensus pattern (28 bp):
CGAGATAAGTCCATTAGGACAATAAACA
Found at i:37630971 original size:43 final size:43
Alignment explanation
Indices: 37630923--37631034 Score: 197
Period size: 43 Copynumber: 2.6 Consensus size: 43
37630913 CCGGCATTAC
* *
37630923 GCCTGCTAGGCACGAAGGCCCGAATCCATATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
37630966 GCCTGCTAGGCACCAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
37631009 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
37631035 TAATACCAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 65 1.00
ACGTcount: A:0.29, C:0.35, G:0.26, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:37631080 original size:38 final size:38
Alignment explanation
Indices: 37631027--37631228 Score: 287
Period size: 38 Copynumber: 5.3 Consensus size: 38
37631017 GGCACGAAGG
* * * *
37631027 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
37631065 CCCGGATATAGTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* ** *
37631103 CCCAGATATTTTACCAGCACGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTTAA
37631142 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 -CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
37631181 CCCGGATATATTACCAGCATGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
37631219 CCCGGATATA
1 CCCGGATATA
37631229 CATCGAATAT
Statistics
Matches: 147, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
38 108 0.73
39 10 0.07
40 29 0.20
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:37631161 original size:78 final size:76
Alignment explanation
Indices: 37631032--37631228 Score: 295
Period size: 78 Copynumber: 2.6 Consensus size: 76
37631022 GAAGGCCCGA
* * * * *
37631032 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGGATATAGTACCAGCACGAAGCCTGCGGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
37631097 ATTTAACCCAG
66 ATTTAACCCAG
* *
37631108 ATATTTTACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATATAATACCAGCACGAAGCCTGCG
1 ATATATTACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGGATATAATACCAGCACGAAGCCTGCG
*
37631173 GGATTTAACCCGG
64 GGATTTAACCCAG
*
37631186 ATATATTACCAGCATGAAGCCTGCGGGATTTAACCCGGATATA
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
37631229 CATCGAATAT
Statistics
Matches: 108, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
76 33 0.31
77 9 0.08
78 66 0.61
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.22
Consensus pattern (76 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
ATTTAACCCAG
Found at i:37631352 original size:75 final size:75
Alignment explanation
Indices: 37631229--37631378 Score: 300
Period size: 75 Copynumber: 2.0 Consensus size: 75
37631219 CCCGGATATA
37631229 CATCGAATATCATGCATATTTAATCATATTTTAACACCTCTCATTCAACATATCACATTAGTAGT
1 CATCGAATATCATGCATATTTAATCATATTTTAACACCTCTCATTCAACATATCACATTAGTAGT
37631294 CATTTGCTAC
66 CATTTGCTAC
37631304 CATCGAATATCATGCATATTTAATCATATTTTAACACCTCTCATTCAACATATCACATTAGTAGT
1 CATCGAATATCATGCATATTTAATCATATTTTAACACCTCTCATTCAACATATCACATTAGTAGT
37631369 CATTTGCTAC
66 CATTTGCTAC
37631379 ATTCAGATAT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (75 bp):
CATCGAATATCATGCATATTTAATCATATTTTAACACCTCTCATTCAACATATCACATTAGTAGT
CATTTGCTAC
Found at i:37635627 original size:85 final size:85
Alignment explanation
Indices: 37635484--37635747 Score: 510
Period size: 85 Copynumber: 3.1 Consensus size: 85
37635474 GGCCGGCCAT
37635484 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
37635549 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
37635569 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
37635634 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
37635654 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
*
37635719 GTAAGGATTAATATAATAAA
66 GTAAGGATTAATAAAATAAA
*
37635739 GGGCATGGG
1 GAGCATGGG
37635748 CAATAAAATA
Statistics
Matches: 177, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 177 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:37637682 original size:47 final size:47
Alignment explanation
Indices: 37637629--37638122 Score: 762
Period size: 47 Copynumber: 10.5 Consensus size: 47
37637619 GTATATTTGA
* * * *
37637629 ATGAATGTGAAAGCGTATTTATGTGATAAGGCCGAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
37637676 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
37637723 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
37637770 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
37637817 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
37637864 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
* * *
37637911 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTG
* *
37637960 ATGAATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
* * * *
37638007 ATGAATGTGAAAGTGTATATATATGTGAAAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTG
* * *
37638056 ATGAATGTGAAAGTGTATATA--T-ATATGTG-ATAAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAG-GCCT-AATAGCCGATGTG
37638101 ATGAATGTGAAAGTGTATATAT
1 ATGAATGTGAAAGTGTATATAT
37638123 NNNNNNNNNN
Statistics
Matches: 421, Mismatches: 19, Indels: 15
0.93 0.04 0.03
Matches are distributed among these distances:
44 3 0.01
45 35 0.08
47 296 0.70
49 87 0.21
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
Found at i:37641070 original size:38 final size:38
Alignment explanation
Indices: 37641006--37641078 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
37640996 AATCCGAGTT
*
37641006 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
37641044 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCC
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCC
37641079 AGATTAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 1 0.03
38 30 0.97
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:37641193 original size:40 final size:40
Alignment explanation
Indices: 37641134--37641294 Score: 225
Period size: 40 Copynumber: 4.0 Consensus size: 40
37641124 AGGTCTCGAC
37641134 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
37641173 GATGTATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
37641213 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * ** * * *
37641253 GATATATCCGTGCTAAACCCCAAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
37641293 GA
1 GA
37641295 CGTGTATTCG
Statistics
Matches: 108, Mismatches: 13, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 4 0.04
40 104 0.96
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:37641498 original size:25 final size:25
Alignment explanation
Indices: 37641457--37641506 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
37641447 TGTGTAATAA
37641457 CGAATGAATAAGAGCACTATGTGTG
1 CGAATGAATAAGAGCACTATGTGTG
* *
37641482 CGAATG-ATTAGAGGCACTGTGTGTG
1 CGAATGAATAAGA-GCACTATGTGTG
37641507 TGCGAATTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.30, C:0.12, G:0.32, T:0.26
Consensus pattern (25 bp):
CGAATGAATAAGAGCACTATGTGTG
Found at i:37642693 original size:85 final size:85
Alignment explanation
Indices: 37642550--37642728 Score: 358
Period size: 85 Copynumber: 2.1 Consensus size: 85
37642540 GGCCGGCCAT
37642550 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
37642615 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
37642635 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
37642700 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
37642720 GAGCATGGG
1 GAGCATGGG
37642729 CAATAAAAAA
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:37646503 original size:4 final size:4
Alignment explanation
Indices: 37646494--37646542 Score: 50
Period size: 4 Copynumber: 12.5 Consensus size: 4
37646484 AGAAGAATAA
*
37646494 AAAT AAAT AAAT -AAT GAAAAT AAAT AAAT AAAT -AA- AAAT AAAC AAAT
1 AAAT AAAT AAAT AAAT --AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
37646541 AA
1 AA
37646543 GATCAATCGA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
3 7 0.18
4 28 0.74
6 3 0.08
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (4 bp):
AAAT
Found at i:37646515 original size:17 final size:17
Alignment explanation
Indices: 37646489--37646542 Score: 81
Period size: 17 Copynumber: 3.1 Consensus size: 17
37646479 TATTAAGAAG
37646489 AATAAAAATAAATAAAT
1 AATAAAAATAAATAAAT
*
37646506 AATGAAAATAAATAAAT
1 AATAAAAATAAATAAAT
*
37646523 AAATAAAAATAAACAAAT
1 -AATAAAAATAAATAAAT
37646541 AA
1 AA
37646543 GATCAATCGA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
17 18 0.55
18 15 0.45
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (17 bp):
AATAAAAATAAATAAAT
Found at i:37669615 original size:13 final size:14
Alignment explanation
Indices: 37669594--37669626 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
37669584 TTTATTAATG
37669594 AAATATATTAAA-AT
1 AAAT-TATTAAATAT
37669608 AAATTATTAAATAT
1 AAATTATTAAATAT
37669622 AAATT
1 AAATT
37669627 TATATTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
AAATTATTAAATAT
Found at i:37683119 original size:21 final size:22
Alignment explanation
Indices: 37683069--37683122 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
37683059 TGCAAGGCTC
**
37683069 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCGTGTGACCCAAGGG
* *
37683091 ACATGCCCGTGTGACCCTA-GG
1 ACACGCCCGTGTGACCCAAGGG
37683112 ACACGCCCGTG
1 ACACGCCCGTG
37683123 CTGGAGGCTA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.19, C:0.35, G:0.31, T:0.15
Consensus pattern (22 bp):
ACACGCCCGTGTGACCCAAGGG
Found at i:37689036 original size:24 final size:25
Alignment explanation
Indices: 37689009--37689055 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37688999 TCATTTTTAG
*
37689009 GTTATTATTT-TAAATATATAAAAA
1 GTTATAATTTATAAATATATAAAAA
*
37689033 GTTATAATTTATAAATTTATAAA
1 GTTATAATTTATAAATATATAAA
37689056 TTATAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (25 bp):
GTTATAATTTATAAATATATAAAAA
Found at i:37689068 original size:15 final size:15
Alignment explanation
Indices: 37689019--37689070 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
37689009 GTTATTATTT
37689019 TAAATATATAAAAAGTTA
1 TAAAT-TATAAAAA--TA
* **
37689037 TAATTTATAAATTTA
1 TAAATTATAAAAATA
37689052 TAAATTATAAAAATA
1 TAAATTATAAAAATA
37689067 TAAA
1 TAAA
37689071 AAATATACAA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
15 18 0.64
17 6 0.21
18 4 0.14
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (15 bp):
TAAATTATAAAAATA
Found at i:37689092 original size:25 final size:24
Alignment explanation
Indices: 37689050--37689097 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
37689040 TTTATAAATT
37689050 TATAAATTATAAAAATATAAAAAA
1 TATAAATTATAAAAATATAAAAAA
37689074 TATACAATTA-AAAATATATAAAAA
1 TATA-AATTATAAAA-ATATAAAAA
37689098 GCCTATTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (24 bp):
TATAAATTATAAAAATATAAAAAA
Found at i:37689497 original size:13 final size:13
Alignment explanation
Indices: 37689479--37689531 Score: 72
Period size: 13 Copynumber: 4.1 Consensus size: 13
37689469 AGTTTGGCAA
37689479 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
37689492 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
37689505 TG-TTGTGGAAAAG
1 TGCTT-TTGAAAAG
37689518 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
37689531 T
1 T
37689532 TTGGTTTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
12 2 0.06
13 30 0.88
14 2 0.06
ACGTcount: A:0.28, C:0.06, G:0.28, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:37695696 original size:2 final size:2
Alignment explanation
Indices: 37695691--37695725 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
37695681 AATATATATA
37695691 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
37695726 ATGGAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:37700557 original size:72 final size:72
Alignment explanation
Indices: 37700439--37700630 Score: 312
Period size: 72 Copynumber: 2.6 Consensus size: 72
37700429 TATATATTAG
*
37700439 TGCTTTTTTGATAGGTTCCAGCTCAATAATGTCTTTTGATCTGAGTTTGATCTGAGTTCGGAAAA
1 TGCTTTTTT-ATAGGTTTCAGCTCAATAATGTCTTTTGATCTGAGTTTGATCTGAGTTCGGAAAA
37700504 CTCTTTAC
65 CTCTTTAC
*
37700512 TGCTTTTTTATAGGTTTCAGCTCAATAATGTCTTTTGATCTGAGTTTGATCTGAGTTTGGAAAAC
1 TGCTTTTTTATAGGTTTCAGCTCAATAATGTCTTTTGATCTGAGTTTGATCTGAGTTCGGAAAAC
*
37700577 TCTTTAG
66 TCTTTAC
* * *
37700584 TGTTTTTTTTATAGGTTTCAGCTTAATAATTTCTTTTGATCTGAGTT
1 TG-CTTTTTTATAGGTTTCAGCTCAATAATGTCTTTTGATCTGAGTT
37700631 CTGTGATAGA
Statistics
Matches: 112, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
72 62 0.55
73 50 0.45
ACGTcount: A:0.21, C:0.13, G:0.18, T:0.47
Consensus pattern (72 bp):
TGCTTTTTTATAGGTTTCAGCTCAATAATGTCTTTTGATCTGAGTTTGATCTGAGTTCGGAAAAC
TCTTTAC
Found at i:37700561 original size:11 final size:11
Alignment explanation
Indices: 37700545--37700570 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
37700535 AATAATGTCT
37700545 TTTGATCTGAG
1 TTTGATCTGAG
37700556 TTTGATCTGAG
1 TTTGATCTGAG
37700567 TTTG
1 TTTG
37700571 GAAAACTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.08, G:0.27, T:0.50
Consensus pattern (11 bp):
TTTGATCTGAG
Found at i:37703943 original size:26 final size:26
Alignment explanation
Indices: 37703907--37704016 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
37703897 CATGAAATTC
37703907 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
37703933 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
37703959 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
37703985 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
37704011 TTATCA
1 TTATCA
37704017 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:37705002 original size:28 final size:28
Alignment explanation
Indices: 37704962--37705020 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
37704952 CTGTACACAC
*
37704962 TAAAATCCTTCCCAGACTCAGGTTGAAT
1 TAAAATCCTTCCCAGACTCAGGCTGAAT
37704990 TAAAATCCTTCCCAGACTCAGGCTGAAT
1 TAAAATCCTTCCCAGACTCAGGCTGAAT
37705018 TAA
1 TAA
37705021 CACAGGTGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (28 bp):
TAAAATCCTTCCCAGACTCAGGCTGAAT
Found at i:37709160 original size:26 final size:26
Alignment explanation
Indices: 37709124--37709285 Score: 252
Period size: 26 Copynumber: 6.2 Consensus size: 26
37709114 CATGAAATTC
*
37709124 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
37709150 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
37709176 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
* *
37709202 TTATCATGGAATATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
37709228 TTATCATGAAACATTTACCGAACCTA
1 TTATCATGAAACATTTACCTAACCTA
* *
37709254 TTATCGTGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
37709280 TTATCA
1 TTATCA
37709286 ATTTGTATCA
Statistics
Matches: 126, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 126 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:37709758 original size:32 final size:32
Alignment explanation
Indices: 37709722--37709938 Score: 272
Period size: 32 Copynumber: 6.8 Consensus size: 32
37709712 ATTATGCTAG
*
37709722 TTTTTTATATGTAAAACTAATGCATGATCTAC
1 TTTTTTATATGTAAAACTAATGTATGATCTAC
* * *
37709754 TTTTTCATTTGCAAAACTAATGTATGATCTAC
1 TTTTTTATATGTAAAACTAATGTATGATCTAC
* * * * *
37709786 TTTTTTATTTCTGAACCTAATGTATTATCTAC
1 TTTTTTATATGTAAAACTAATGTATGATCTAC
*
37709818 TTTTTTATATGCAAAACTAATGTATGATCTAC
1 TTTTTTATATGTAAAACTAATGTATGATCTAC
* * * * *
37709850 TTTTTTATTTCTGAACCTAATGTATTATCTAC
1 TTTTTTATATGTAAAACTAATGTATGATCTAC
*
37709882 TTTTTTATATGCAAAACTAATGTATGATCTAC
1 TTTTTTATATGTAAAACTAATGTATGATCTAC
* *
37709914 TTTTTTATACGTAAACCTAATGTAT
1 TTTTTTATATGTAAAACTAATGTAT
37709939 CATATTTTTT
Statistics
Matches: 154, Mismatches: 31, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 154 1.00
ACGTcount: A:0.31, C:0.14, G:0.08, T:0.47
Consensus pattern (32 bp):
TTTTTTATATGTAAAACTAATGTATGATCTAC
Found at i:37709831 original size:64 final size:64
Alignment explanation
Indices: 37709738--37709938 Score: 332
Period size: 64 Copynumber: 3.1 Consensus size: 64
37709728 ATATGTAAAA
* * * *
37709738 CTAATGCATGATCTACTTTTTCATTTGCAAAACTAATGTATGATCTACTTTTTTATTTCTGAAC
1 CTAATGTATTATCTACTTTTTTATATGCAAAACTAATGTATGATCTACTTTTTTATTTCTGAAC
37709802 CTAATGTATTATCTACTTTTTTATATGCAAAACTAATGTATGATCTACTTTTTTATTTCTGAAC
1 CTAATGTATTATCTACTTTTTTATATGCAAAACTAATGTATGATCTACTTTTTTATTTCTGAAC
* *
37709866 CTAATGTATTATCTACTTTTTTATATGCAAAACTAATGTATGATCTACTTTTTTA-TACGTAAAC
1 CTAATGTATTATCTACTTTTTTATATGCAAAACTAATGTATGATCTACTTTTTTATTTC-TGAAC
37709930 CTAATGTAT
1 CTAATGTAT
37709939 CATATTTTTT
Statistics
Matches: 130, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
63 2 0.02
64 128 0.98
ACGTcount: A:0.30, C:0.15, G:0.08, T:0.46
Consensus pattern (64 bp):
CTAATGTATTATCTACTTTTTTATATGCAAAACTAATGTATGATCTACTTTTTTATTTCTGAAC
Found at i:37713185 original size:47 final size:47
Alignment explanation
Indices: 37713126--37713803 Score: 1041
Period size: 47 Copynumber: 14.4 Consensus size: 47
37713116 GATGTACAAG
* * *
37713126 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
37713173 GTGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
37713220 GTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
37713267 GTGTACATATGTGATAAGGCCGAATGGCCAAGGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
37713314 GTGTATATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
37713361 GTGTATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
37713408 GTGTGTATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
37713455 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
37713502 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
37713549 GTGTATATATGTGATTAGGCTGAATGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
37713596 GTGTACATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
37713643 GTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * *
37713690 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
37713737 GTGTATATATGTGATAAGGCCGAATGGTGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAAT-G-GCCAATGTGATGAATGTGAAA
*
37713786 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
37713804 TCCCGAAGGG
Statistics
Matches: 577, Mismatches: 52, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
47 540 0.94
48 1 0.00
49 36 0.06
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:37713231 original size:25 final size:25
Alignment explanation
Indices: 37713156--37713234 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
37713146 CTAATGGCCG
*
37713156 ATGTGATGAATGTGAAAGTGTATGT
1 ATGTGATGAATGTGAAAGTGTATAT
* * ***
37713181 ATGTGAT-AAGGCCG-AA-TGGCCA-
1 ATGTGATGAATG-TGAAAGTGTATAT
37713203 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
37713228 ATGTGAT
1 ATGTGAT
37713235 AGGGCCGAGT
Statistics
Matches: 38, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 8 0.21
23 7 0.18
24 8 0.21
25 15 0.39
ACGTcount: A:0.33, C:0.05, G:0.30, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:37713397 original size:22 final size:22
Alignment explanation
Indices: 37713325--37713397 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
37713315 TGTATATATA
*
37713325 TGATAAGGCCGAATGGCCAATG
1 TGATAAGGCTGAATGGCCAATG
* ***
37713347 TGATGAATG-TGAAAGTGTATATATG
1 TGAT-AAGGCTG-AA-TGGCCA-ATG
37713372 TGATAAGGCTGAATGGCCAATG
1 TGATAAGGCTGAATGGCCAATG
37713394 TGAT
1 TGAT
37713398 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 9, Indels: 10
0.66 0.16 0.18
Matches are distributed among these distances:
22 12 0.32
23 8 0.22
24 8 0.22
25 9 0.24
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (22 bp):
TGATAAGGCTGAATGGCCAATG
Found at i:37717505 original size:21 final size:21
Alignment explanation
Indices: 37717480--37717532 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
37717470 CGTTGTTTCT
* *
37717480 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAATAACC
*
37717501 AATCTCACCGCTACAATAACT
1 AATCTCACCGCTACAATAACC
37717522 AATCTCACCGC
1 AATCTCACCGC
37717533 CACCGCTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.32, C:0.38, G:0.08, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:37722267 original size:21 final size:20
Alignment explanation
Indices: 37722243--37722281 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
37722233 TATTTTTATA
*
37722243 ATTTTGAATATTTTTATTTTT
1 ATTTTGAATA-ATTTATTTTT
*
37722264 ATTTTTAATAATTTATTT
1 ATTTTGAATAATTTATTT
37722282 GCTTTGAACC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (20 bp):
ATTTTGAATAATTTATTTTT
Found at i:37725801 original size:27 final size:27
Alignment explanation
Indices: 37725771--37725825 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
37725761 ATATGTGATT
37725771 GGGGGATCAAAAGTTTAACTCAAAGAA
1 GGGGGATCAAAAGTTTAACTCAAAGAA
* * *
37725798 GGGGGATCAGAGGTTTAACTCAAGGAA
1 GGGGGATCAAAAGTTTAACTCAAAGAA
37725825 G
1 G
37725826 AATTTGAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.38, C:0.11, G:0.33, T:0.18
Consensus pattern (27 bp):
GGGGGATCAAAAGTTTAACTCAAAGAA
Found at i:37728110 original size:19 final size:20
Alignment explanation
Indices: 37728086--37728124 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
37728076 TATTAGTGAT
37728086 TACATATGTAAAT-TTAATA
1 TACATATGTAAATATTAATA
*
37728105 TACATATGTATATATTAATA
1 TACATATGTAAATATTAATA
37728125 AAATATGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (20 bp):
TACATATGTAAATATTAATA
Found at i:37728130 original size:19 final size:19
Alignment explanation
Indices: 37728089--37728132 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
37728079 TAGTGATTAC
*
37728089 ATATGTAAATTTAATATAC
1 ATATGTAAATTTAATATAA
*
37728108 ATATGTATATATTAATA-AA
1 ATATGTAAAT-TTAATATAA
37728127 ATATGT
1 ATATGT
37728133 TTACTTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (19 bp):
ATATGTAAATTTAATATAA
Found at i:37730111 original size:7 final size:7
Alignment explanation
Indices: 37730099--37730124 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
37730089 AATCTGAATG
37730099 ATTTTAA
1 ATTTTAA
37730106 ATTTTAA
1 ATTTTAA
37730113 ATTTTAA
1 ATTTTAA
37730120 ATTTT
1 ATTTT
37730125 TTTTATAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (7 bp):
ATTTTAA
Found at i:37730136 original size:19 final size:19
Alignment explanation
Indices: 37730107--37730147 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
37730097 TGATTTTAAA
37730107 TTTTAAA-TTTTAAATTTT
1 TTTTAAATTTTTAAATTTT
*
37730125 TTTTATAATTTTTGAATTTT
1 TTTTA-AATTTTTAAATTTT
37730145 TTT
1 TTT
37730148 AGACCAAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 2 0.10
20 13 0.65
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTTAAATTTTTAAATTTT
Found at i:37730735 original size:18 final size:18
Alignment explanation
Indices: 37730712--37730746 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
37730702 TTTTACTTGT
37730712 TTGGCTTGATTAATTAAA
1 TTGGCTTGATTAATTAAA
37730730 TTGGCTTGATTAATTAA
1 TTGGCTTGATTAATTAA
37730747 TACATCTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.06, G:0.17, T:0.46
Consensus pattern (18 bp):
TTGGCTTGATTAATTAAA
Found at i:37737728 original size:18 final size:18
Alignment explanation
Indices: 37737694--37737728 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37737684 ATATGGTAAA
* *
37737694 TTATTAATTTAGGATAAT
1 TTATTAATTAAGAATAAT
37737712 TTATTAATTAAGAATAA
1 TTATTAATTAAGAATAA
37737729 AAATTATAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.46
Consensus pattern (18 bp):
TTATTAATTAAGAATAAT
Found at i:37738358 original size:22 final size:23
Alignment explanation
Indices: 37738341--37738384 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
37738331 TTAAAATTTT
37738341 AATTTAACTATT-TAAAAATTAC
1 AATTTAACTATTATAAAAATTAC
* *
37738363 ATTTTTACTATTATAAAAATTA
1 AATTTAACTATTATAAAAATTA
37738385 AAATATAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (23 bp):
AATTTAACTATTATAAAAATTAC
Found at i:37738511 original size:21 final size:21
Alignment explanation
Indices: 37738482--37738521 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
37738472 CAAATAATGC
*
37738482 AAAATAAAATTAA-AAAATAT
1 AAAATAAAAATAAGAAAATAT
37738502 AAAAGTAAAAATAAGAAAAT
1 AAAA-TAAAAATAAGAAAAT
37738522 TTGAAGTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 8 0.47
22 5 0.29
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (21 bp):
AAAATAAAAATAAGAAAATAT
Found at i:37745072 original size:14 final size:15
Alignment explanation
Indices: 37745039--37745070 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
37745029 TATGCATGCA
37745039 AAATACAAAAAACAT
1 AAATACAAAAAACAT
*
37745054 AAATACAAAAAATAT
1 AAATACAAAAAACAT
37745069 AA
1 AA
37745071 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.75, C:0.09, G:0.00, T:0.16
Consensus pattern (15 bp):
AAATACAAAAAACAT
Found at i:37745300 original size:13 final size:13
Alignment explanation
Indices: 37745282--37745306 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37745272 GGGTTTTGTA
37745282 AGGTCCATAATTT
1 AGGTCCATAATTT
37745295 AGGTCCATAATT
1 AGGTCCATAATT
37745307 GGGAGTACCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
AGGTCCATAATTT
Found at i:37756526 original size:327 final size:327
Alignment explanation
Indices: 37755923--37756569 Score: 1005
Period size: 327 Copynumber: 2.0 Consensus size: 327
37755913 GTTTGACTTG
* * * * *
37755923 TCAGCAGGTTAAGGCTGAGCATCAATTACTTTCGGGTTTGTTACAACCTATACCGTTATGGAAAT
1 TCAGCAGGTTAAGGCTAAGCATCAATTACCTTCGGGTTTGCTACAACCGATACAGTTATGGAAAT
* * * * *
37755988 GGAAGCGAGTAACAATGGACTTCGTTAGTGGGTTACTTCTAACATCGACTAAGAAGGATTCTGTT
66 GGAAACGAGTAACAATGGACTTCGTTAGTGGGTTACCTCTAACATCGACTAAAAAGAATTCTGTC
* *
37756053 TGGGTCATCGTGGATCGATTGACCAAGTCTGCTCACTTTATCCCGGTAAGAATAAACTTTTCTCT
131 TGGGTCATCGTGGATCGATTGACCAAGTCTGCTCACTTCATCCCGGTAAGAACAAACTTTTCTCT
*
37756118 TCAGAAGTTAGCTAAGCTCTACATCTTGGAAATAATAAGACTGTAGAGGGTACTTGTCTCGATCA
196 TCAGAAGTTAGCTAAGCTCTACATCTTGGAAATAATAAGACTGTAGAGGGTACCTGTCTCGATCA
37756183 TTTCTGATTAGGATCCTCGTTTCACATCTCAGTTCTAGAAGAAGCTTCATGAGGCTCTAGCTGTT
261 TTTCTGATTAGGATCCTCGTTTCACATCTCAGTTCTAGAAGAAGCTTCATGAGGCTCTAGCTGTT
37756248 TA
326 TA
* * * **
37756250 TCAGTAGGTTAAGGCTAAGCATTAGTTACCTTCGGGTTTGCTACAGTCGATACAGTTATGGAAAT
1 TCAGCAGGTTAAGGCTAAGCATCAATTACCTTCGGGTTTGCTACAACCGATACAGTTATGGAAAT
* *
37756315 GGAAACGAGTAACGATGGACTTCGTTAGTGGGTTACCTCTAACA-CTGATTAAAAAGAATTCTGT
66 GGAAACGAGTAACAATGGACTTCGTTAGTGGGTTACCTCTAACATC-GACTAAAAAGAATTCTGT
*
37756379 CTGGGTCATCGTGGATCGATTGACCAAGTCTGCTCACTTCATCCCGGTAA-AGACAGACTTTTCT
130 CTGGGTCATCGTGGATCGATTGACCAAGTCTGCTCACTTCATCCCGGTAAGA-ACAAACTTTTCT
37756443 CTTCAGAAGTTAGCTAAGCTCTACATCTTGGAAATAATAAGACTGTATG-GGGTACCTGTCTCGA
194 CTTCAGAAGTTAGCTAAGCTCTACATCTTGGAAATAATAAGACTGTA-GAGGGTACCTGTCTCGA
** * *
37756507 TCATTTCTGA-TAGGGATCCTCGTTTCATGTCTCAGTTCTGGAAGAAGTTTCATGAGGCTCTAG
258 TCATTTCTGATTA-GGATCCTCGTTTCACATCTCAGTTCTAGAAGAAGCTTCATGAGGCTCTAG
37756570 GTTCAAGATT
Statistics
Matches: 291, Mismatches: 25, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
326 4 0.01
327 286 0.98
328 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (327 bp):
TCAGCAGGTTAAGGCTAAGCATCAATTACCTTCGGGTTTGCTACAACCGATACAGTTATGGAAAT
GGAAACGAGTAACAATGGACTTCGTTAGTGGGTTACCTCTAACATCGACTAAAAAGAATTCTGTC
TGGGTCATCGTGGATCGATTGACCAAGTCTGCTCACTTCATCCCGGTAAGAACAAACTTTTCTCT
TCAGAAGTTAGCTAAGCTCTACATCTTGGAAATAATAAGACTGTAGAGGGTACCTGTCTCGATCA
TTTCTGATTAGGATCCTCGTTTCACATCTCAGTTCTAGAAGAAGCTTCATGAGGCTCTAGCTGTT
TA
Found at i:37761421 original size:17 final size:18
Alignment explanation
Indices: 37761399--37761433 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
37761389 GATATGATAC
*
37761399 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
37761416 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
37761434 AGGGAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:37761729 original size:23 final size:22
Alignment explanation
Indices: 37761686--37761743 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
37761676 AAAAGGTATA
* *
37761686 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
37761707 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
37761730 TGCATATCATATCT
1 TACAAATCATATCT
37761744 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:37761746 original size:19 final size:19
Alignment explanation
Indices: 37761722--37761758 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
37761712 AATCATATCT
37761722 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
37761741 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
37761759 TGAGATTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:37762182 original size:45 final size:45
Alignment explanation
Indices: 37762113--37762380 Score: 240
Period size: 45 Copynumber: 5.9 Consensus size: 45
37762103 CAATATATGC
* * *
37762113 TATCTTTGATCTGCTCTCCATCTAATACAGAGACGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * *
37762158 TATCTTCGATTTGCTCCCCGTCTAATACAGAGACGCCAAATTTGC
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * * *
37762203 T-TCTTCAATCTGCTCCTCGTCTAATACAGAAATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* *
37762247 TATC-TCTGATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
1 TATCTTC-GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * * * * * * * *
37762292 CATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAGATCTACT
1 TATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAAATCT-GT
* *
37762338 ATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
1 -TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATC
37762381 ATCTTGGATC
Statistics
Matches: 176, Mismatches: 36, Indels: 20
0.76 0.16 0.09
Matches are distributed among these distances:
43 6 0.03
44 44 0.25
45 94 0.53
46 2 0.01
47 19 0.11
48 5 0.03
49 6 0.03
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (45 bp):
TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
Found at i:37762449 original size:78 final size:78
Alignment explanation
Indices: 37762320--37762552 Score: 387
Period size: 78 Copynumber: 3.0 Consensus size: 78
37762310 ATGTAAACAC
*
37762320 ATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
37762385 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
37762398 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATAATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
37762462 TTAGATCTGCTTCA
65 TTGGATCTGCTTCA
* *
37762476 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTTCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
37762541 TGGATCTACTTC
66 TGGATCTGCTTC
37762553 GATGTGAAAA
Statistics
Matches: 143, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
77 2 0.01
78 139 0.97
79 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:37766938 original size:23 final size:23
Alignment explanation
Indices: 37766912--37766956 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
37766902 ACAATATGCA
*
37766912 TGCCGATTTTCACCTCTTTCCCG
1 TGCCAATTTTCACCTCTTTCCCG
37766935 TGCCAATTTTCACCTCTTTCCC
1 TGCCAATTTTCACCTCTTTCCC
37766957 TTCCTCTAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.11, C:0.40, G:0.09, T:0.40
Consensus pattern (23 bp):
TGCCAATTTTCACCTCTTTCCCG
Found at i:37770756 original size:17 final size:18
Alignment explanation
Indices: 37770734--37770768 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
37770724 GATATGATAC
*
37770734 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
37770751 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
37770769 CAGAGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:37771063 original size:23 final size:22
Alignment explanation
Indices: 37771035--37771080 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
37771025 CAAATTAAAT
37771035 TTCTAAGATTACAAAATCATATC
1 TTCTAAGATTAC-AAATCATATC
* *
37771058 TTCTAAGATTGCATATCATATC
1 TTCTAAGATTACAAATCATATC
37771080 T
1 T
37771081 ACGATTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (22 bp):
TTCTAAGATTACAAATCATATC
Found at i:37771074 original size:17 final size:19
Alignment explanation
Indices: 37771059--37771130 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
37771049 AATCATATCT
37771059 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
37771078 TCTACGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
37771096 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
37771113 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
37771131 TGAAGATTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
17 16 0.33
18 15 0.31
19 17 0.35
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:37771115 original size:35 final size:37
Alignment explanation
Indices: 37771052--37771130 Score: 112
Period size: 35 Copynumber: 2.2 Consensus size: 37
37771042 ATTACAAAAT
*
37771052 CATATC-T-TCTAAGATTGCATATCATATCTACGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
37771088 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
37771123 CATATCAT
1 CATATCAT
37771131 TGAAGATTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
35 21 0.54
36 8 0.21
37 10 0.26
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:37771128 original size:14 final size:15
Alignment explanation
Indices: 37771091--37771128 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
37771081 ACGATTGCAA
37771091 TCATATCTAAGATTG
1 TCATATCTAAGATTG
37771106 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
37771123 -CATATC
1 TCATATC
37771129 ATTGAAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
17 15 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:37774615 original size:6 final size:6
Alignment explanation
Indices: 37774604--37774631 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
37774594 ATTTTGAAAT
37774604 TTTTTG TTTTTG TTTTTG TTTTTG TTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTT
37774632 CTTACATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (6 bp):
TTTTTG
Found at i:37778551 original size:16 final size:13
Alignment explanation
Indices: 37778520--37778554 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
37778510 TATTTATTAT
37778520 TATTATTTTAACC
1 TATTATTTTAACC
*
37778533 TATTATTTTAACA
1 TATTATTTTAACC
*
37778546 TACTATTTT
1 TATTATTTT
37778555 TGAACTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.57
Consensus pattern (13 bp):
TATTATTTTAACC
Found at i:37779397 original size:24 final size:24
Alignment explanation
Indices: 37779365--37779412 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
37779355 ATTGTTATAT
37779365 CAATTATCCTCCATTCATGCTTGG
1 CAATTATCCTCCATTCATGCTTGG
*
37779389 CAATTATCCTTCATTCATGCTTGG
1 CAATTATCCTCCATTCATGCTTGG
37779413 AAGTTTAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.27, G:0.12, T:0.40
Consensus pattern (24 bp):
CAATTATCCTCCATTCATGCTTGG
Found at i:37780382 original size:66 final size:65
Alignment explanation
Indices: 37780244--37780372 Score: 179
Period size: 66 Copynumber: 2.0 Consensus size: 65
37780234 AGGAAATTGC
* * *
37780244 TCAACTTAAAGCGAAGGCAGCATCGAGAGAAGCAGAGGCTCAAAGAAAATATGAAGAACTCCAAC
1 TCAACTTAAAGCAAAGGCAGCAGCGAGAGAAGCAAAGGC-CAAAGAAAATATGAAGAACTCCAAC
37780309 T
65 T
* *
37780310 TCAACTTAAAGCAAAGGCAGCAGCGAGAGAAGCAAATG-CAAGCAGAAAATATGACGAACTCCA
1 TCAACTTAAAGCAAAGGCAGCAGCGAGAGAAGCAAAGGCCAA--AGAAAATATGAAGAACTCCA
37780373 GTTACAACTT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
64 3 0.05
66 53 0.95
ACGTcount: A:0.45, C:0.20, G:0.22, T:0.12
Consensus pattern (65 bp):
TCAACTTAAAGCAAAGGCAGCAGCGAGAGAAGCAAAGGCCAAAGAAAATATGAAGAACTCCAACT
Found at i:37780790 original size:43 final size:41
Alignment explanation
Indices: 37780712--37780917 Score: 168
Period size: 43 Copynumber: 4.9 Consensus size: 41
37780702 GCTTTTACTA
** * * *
37780712 AAAACGCCACTAAAGAACATGATATTTAGCAGCGTTCTTGGG
1 AAAACGCCACTAAAGGTCATGTTCTATAGCAGCGTT-TTGGG
** *
37780754 AAAACCGCTGCTAAAGGTCATGTTCTATAGCGGCGTTTGTGGG
1 AAAA-CGCCACTAAAGGTCATGTTCTATAGCAGCGTTT-TGGG
* * * * **
37780797 AAAAGCGCCACTAAATGTCTTTTTCTATAGCATCGTTTGTGAA
1 AAAA-CGCCACTAAAGGTCATGTTCTATAGCAGCGTTT-TGGG
* *
37780840 AAAACG-CAGCTAAAGGTCATGTTCTATAG-AG-TTTTTGTG
1 AAAACGCCA-CTAAAGGTCATGTTCTATAGCAGCGTTTTGGG
37780879 AGAAACGCCACTAAAGGTCATGTTCTATAG-AGGCGTTTT
1 A-AAACGCCACTAAAGGTCATGTTCTATAGCA-GCGTTTT
37780918 TTCCATAAAC
Statistics
Matches: 131, Mismatches: 26, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
39 3 0.02
40 29 0.22
41 6 0.05
42 28 0.21
43 65 0.50
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (41 bp):
AAAACGCCACTAAAGGTCATGTTCTATAGCAGCGTTTTGGG
Found at i:37780877 original size:41 final size:40
Alignment explanation
Indices: 37780764--37780910 Score: 136
Period size: 40 Copynumber: 3.5 Consensus size: 40
37780754 AAAACCGCTG
* * * *
37780764 CTAAAGGTCATGTTCTATAGCGGCGTTTGTGGGAAAAGCGCCA
1 CTAAAGGTCATGTTCTATA---GAGTTTTTGTGAAAAACGCCA
* * * *
37780807 CTAAATGTCTTTTTCTATAGCA-TCGTTTGTGAAAAAACG-CA
1 CTAAAGGTCATGTTCTATAG-AGT-TTTTGTG-AAAAACGCCA
*
37780848 GCTAAAGGTCATGTTCTATAGAGTTTTTGTGAGAAACGCCA
1 -CTAAAGGTCATGTTCTATAGAGTTTTTGTGAAAAACGCCA
37780889 CTAAAGGTCATGTTCTATAGAG
1 CTAAAGGTCATGTTCTATAGAG
37780911 GCGTTTTTTC
Statistics
Matches: 85, Mismatches: 13, Indels: 15
0.75 0.12 0.13
Matches are distributed among these distances:
40 30 0.35
41 15 0.18
42 24 0.28
43 16 0.19
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.31
Consensus pattern (40 bp):
CTAAAGGTCATGTTCTATAGAGTTTTTGTGAAAAACGCCA
Found at i:37783487 original size:25 final size:24
Alignment explanation
Indices: 37783392--37783575 Score: 101
Period size: 24 Copynumber: 7.7 Consensus size: 24
37783382 AACATAGAAA
* *
37783392 TAAAAT-AATAATATAAAACAACT
1 TAAAATAAATAATATAAAAAAATT
* * *
37783415 TAAAACAAAT-A-ATAAGATAATT
1 TAAAATAAATAATATAAAAAAATT
* * **
37783437 TTAAAT-AATATATATATAAAGGTT
1 TAAAATAAATA-ATATAAAAAAATT
* * *
37783461 TAAAATTAATACTATAAAAGCAATT
1 TAAAATAAATAATATAAAA-AAATT
*
37783486 TAAAGTAAATAATATAAAAAAATT
1 TAAAATAAATAATATAAAAAAATT
* * * * *
37783510 TAAAAT-CATTA-ATAAGAAAGTC
1 TAAAATAAATAATATAAAAAAATT
37783532 TAAAATAAATAATATGTAAAAAGAAATT
1 TAAAATAAATAATA--T-AAAA-AAATT
*
37783560 TAAAGTAAATAATATA
1 TAAAATAAATAATATA
37783576 CATAAAACAA
Statistics
Matches: 116, Mismatches: 33, Indels: 22
0.68 0.19 0.13
Matches are distributed among these distances:
21 3 0.03
22 26 0.22
23 13 0.11
24 30 0.26
25 23 0.20
26 2 0.02
27 3 0.03
28 16 0.14
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.30
Consensus pattern (24 bp):
TAAAATAAATAATATAAAAAAATT
Found at i:37783522 original size:24 final size:25
Alignment explanation
Indices: 37783459--37783575 Score: 91
Period size: 25 Copynumber: 4.7 Consensus size: 25
37783449 TATATAAAGG
* * *
37783459 TTTAAAATTAATACTATAAAAGCAA
1 TTTAAAATAAATAATATAAAAGAAA
*
37783484 TTTAAAGTAAATAATATAAAA-AAA
1 TTTAAAATAAATAATATAAAAGAAA
* *
37783508 TTTAAAAT-CAT--TA-ATAAGAAA
1 TTTAAAATAAATAATATAAAAGAAA
*
37783529 GTCTAAAATAAATAATATGTAAAAAGAAA
1 -TTTAAAATAAATAATA--T-AAAAGAAA
*
37783558 TTTAAAGTAAATAATATA
1 TTTAAAATAAATAATATA
37783576 CATAAAACAA
Statistics
Matches: 71, Mismatches: 12, Indels: 18
0.70 0.12 0.18
Matches are distributed among these distances:
20 3 0.04
21 5 0.07
22 7 0.10
23 4 0.06
24 9 0.13
25 21 0.30
26 1 0.01
28 14 0.20
29 7 0.10
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (25 bp):
TTTAAAATAAATAATATAAAAGAAA
Found at i:37783582 original size:29 final size:29
Alignment explanation
Indices: 37783523--37783582 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 29
37783513 AATCATTAAT
**
37783523 AAGAAAGTCTAAAATAAATAATATGTAAA
1 AAGAAAGTCTAAAATAAATAATATACAAA
* *
37783552 AAGAAA-TTTAAAGTAAATAATATACATAA
1 AAGAAAGTCTAAAATAAATAATATACA-AA
37783581 AA
1 AA
37783583 CAAAAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 16 0.62
29 10 0.38
ACGTcount: A:0.63, C:0.03, G:0.08, T:0.25
Consensus pattern (29 bp):
AAGAAAGTCTAAAATAAATAATATACAAA
Found at i:37783866 original size:24 final size:25
Alignment explanation
Indices: 37783789--37783869 Score: 87
Period size: 24 Copynumber: 3.2 Consensus size: 25
37783779 AGGCAATGTA
*
37783789 GAATAATTAATATAAAAAATTCAAAAT
1 GAAT-ATT-ATATAAAAAATTTAAAAT
*
37783816 -AATATGTAT-TAAAATAATTTAATAT
1 GAATAT-TATATAAAA-AATTTAAAAT
37783841 GAATATTATAT-AAAAATTTAAAAT
1 GAATATTATATAAAAAATTTAAAAT
37783865 GAATA
1 GAATA
37783870 GCATATAGAA
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
24 19 0.40
25 18 0.38
26 10 0.21
ACGTcount: A:0.58, C:0.01, G:0.05, T:0.36
Consensus pattern (25 bp):
GAATATTATATAAAAAATTTAAAAT
Found at i:37783875 original size:24 final size:24
Alignment explanation
Indices: 37783831--37783876 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
37783821 GTATTAAAAT
* **
37783831 AATTTAATATGAATATTATATAAA
1 AATTTAAAATGAATAGCATATAAA
37783855 AATTTAAAATGAATAGCATATA
1 AATTTAAAATGAATAGCATATA
37783877 GAATAGTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.37
Consensus pattern (24 bp):
AATTTAAAATGAATAGCATATAAA
Found at i:37783887 original size:50 final size:52
Alignment explanation
Indices: 37783789--37783887 Score: 116
Period size: 50 Copynumber: 1.9 Consensus size: 52
37783779 AGGCAATGTA
*
37783789 GAATAATTAATATAAAAAATTCAAAATAATATGTATTAAAATAATTTAATAT
1 GAATAATTAATATAAAAAATTCAAAATAATATGCATTAAAATAATTTAATAT
* * *
37783841 GAAT-ATT-ATAT-AAAAATTTAAAATGAATA-GCATATAGAATAGTTTAA
1 GAATAATTAATATAAAAAATTCAAAAT-AATATGCAT-TAAAATAATTTAA
37783888 GTTAAATATT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
49 15 0.37
50 19 0.46
51 3 0.07
52 4 0.10
ACGTcount: A:0.56, C:0.02, G:0.07, T:0.35
Consensus pattern (52 bp):
GAATAATTAATATAAAAAATTCAAAATAATATGCATTAAAATAATTTAATAT
Found at i:37792017 original size:21 final size:21
Alignment explanation
Indices: 37791993--37792036 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
37791983 TATGAAAAGT
37791993 TACTTTTTAATGATAAATAAA
1 TACTTTTTAATGATAAATAAA
*
37792014 TACTTTTTGATGATAAATAAA
1 TACTTTTTAATGATAAATAAA
37792035 TA
1 TA
37792037 ATACTTAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43
Consensus pattern (21 bp):
TACTTTTTAATGATAAATAAA
Found at i:37795387 original size:14 final size:14
Alignment explanation
Indices: 37795368--37795396 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
37795358 AATGTTTCTT
37795368 GAGGCAAAAATTCA
1 GAGGCAAAAATTCA
37795382 GAGGCAAAAATTCA
1 GAGGCAAAAATTCA
37795396 G
1 G
37795397 CACCTAATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.14, G:0.24, T:0.14
Consensus pattern (14 bp):
GAGGCAAAAATTCA
Found at i:37804369 original size:17 final size:17
Alignment explanation
Indices: 37804342--37804408 Score: 66
Period size: 17 Copynumber: 4.0 Consensus size: 17
37804332 TTTATAATAA
*
37804342 TTAAGTAATATTTGTATT
1 TTAA-TAATATTTGAATT
*
37804360 TTAATAATATTTAAATT
1 TTAATAATATTTGAATT
* *
37804377 TT--TATTTTTTGAATT
1 TTAATAATATTTGAATT
*
37804392 TTAATAATATTTTAATT
1 TTAATAATATTTGAATT
37804409 ATTTTAGAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
15 12 0.31
17 23 0.59
18 4 0.10
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (17 bp):
TTAATAATATTTGAATT
Found at i:37804437 original size:43 final size:43
Alignment explanation
Indices: 37804356--37804470 Score: 112
Period size: 41 Copynumber: 2.7 Consensus size: 43
37804346 GTAATATTTG
*
37804356 TATTTTAATAATATTTAAATTTTTATTTTTTGAATTTTAATAA
1 TATTTTAATAATATTTAAATTTTTATTTTTTAAATTTTAATAA
* *
37804399 TATTTTAATTAT-TTTAGAA-TTTT-TTTTTTAAATTTT-TTAA
1 TATTTTAATAATATTTA-AATTTTTATTTTTTAAATTTTAATAA
* * * *
37804439 TAATTTTAAAAATTTTTATATTTGATATTTTT
1 T-ATTTTAATAATATTTAAATTT-TTATTTTT
37804471 GAATTTTTTA
Statistics
Matches: 59, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
40 4 0.07
41 22 0.37
42 14 0.24
43 14 0.24
44 5 0.08
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (43 bp):
TATTTTAATAATATTTAAATTTTTATTTTTTAAATTTTAATAA
Found at i:37806420 original size:20 final size:22
Alignment explanation
Indices: 37806380--37806421 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
37806370 TTTAGTCATA
*
37806380 TAATAAATATAATTTATTATTT
1 TAATAAATATAATTTAATATTT
37806402 TAATAAAT-T-ATTTAATATTT
1 TAATAAATATAATTTAATATTT
37806422 CAATTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 1 0.05
22 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATAAATATAATTTAATATTT
Found at i:37806488 original size:27 final size:23
Alignment explanation
Indices: 37806431--37806503 Score: 67
Period size: 27 Copynumber: 3.0 Consensus size: 23
37806421 TCAATTTTAT
*
37806431 TTAATAATAA-ATTTTAAAAATAA
1 TTAATATTAATATTTTAAAAAT-A
*
37806454 TTATTATTCACATATTATTAAAAATA
1 TTAATATT-A-ATATT-TTAAAAATA
*
37806480 TTCAATATTAATATTTTAATAATA
1 TT-AATATTAATATTTTAAAAATA
37806504 AATATTTATT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
23 6 0.15
24 9 0.22
25 6 0.15
26 7 0.17
27 13 0.32
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (23 bp):
TTAATATTAATATTTTAAAAATA
Found at i:37806784 original size:14 final size:14
Alignment explanation
Indices: 37806762--37806800 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
37806752 TCAGAAAAAT
37806762 AAATCATTTTCTAA
1 AAATCATTTTCTAA
*
37806776 AAATTATTTTCTAA
1 AAATCATTTTCTAA
37806790 AAATCATTTTC
1 AAATCATTTTC
37806801 AGTGAAACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.41, C:0.13, G:0.00, T:0.46
Consensus pattern (14 bp):
AAATCATTTTCTAA
Found at i:37822735 original size:19 final size:19
Alignment explanation
Indices: 37822713--37822749 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
37822703 GTTTATATCA
37822713 ATTTTAATAATTTTTTTAT
1 ATTTTAATAATTTTTTTAT
* *
37822732 ATTTTTATGATTTTTTTA
1 ATTTTAATAATTTTTTTA
37822750 AGTTTTTAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (19 bp):
ATTTTAATAATTTTTTTAT
Found at i:37822746 original size:29 final size:28
Alignment explanation
Indices: 37822684--37822762 Score: 72
Period size: 29 Copynumber: 2.8 Consensus size: 28
37822674 TTTGGTTCAA
37822684 ATTTTTATAATTTTTATAAGTTTATATC
1 ATTTTTATAATTTTTATAAGTTTATATC
* * * *
37822712 AATTTTAATAATTTTTTTATA-TTTTTATG
1 -ATTTTTATAATTTTTATA-AGTTTATATC
* *
37822741 ATTTTTTTAAGTTTT-TAAGTTT
1 ATTTTTATAATTTTTATAAGTTT
37822763 TTAATATGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 1 0.02
27 5 0.12
28 12 0.29
29 22 0.54
30 1 0.02
ACGTcount: A:0.29, C:0.01, G:0.05, T:0.65
Consensus pattern (28 bp):
ATTTTTATAATTTTTATAAGTTTATATC
Found at i:37822764 original size:19 final size:19
Alignment explanation
Indices: 37822722--37822764 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
37822712 AATTTTAATA
*
37822722 ATTTTTTTATATTTTTATG
1 ATTTTTTTATATTTTTAAG
37822741 ATTTTTTTA-AGTTTTTAAG
1 ATTTTTTTATA-TTTTTAAG
37822760 -TTTTT
1 ATTTTT
37822765 AATATGTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.72
Consensus pattern (19 bp):
ATTTTTTTATATTTTTAAG
Found at i:37822775 original size:48 final size:48
Alignment explanation
Indices: 37822682--37822786 Score: 117
Period size: 48 Copynumber: 2.2 Consensus size: 48
37822672 GATTTGGTTC
*
37822682 AAATTTTTATAATTTTTATAAGTTTATATCAATTTTAATAATTTTTTT
1 AAATTTTTATAATTTTTATAAGTTTATATCAATTTTAATAATTTTTAT
* * * *
37822730 ATATTTTTATGATTTTTTTAAGTTT-T-T-AAGTTTTTAATATGTTTTTAT
1 AAATTTTTATAATTTTTATAAGTTTATATCAA--TTTTAATA-ATTTTTAT
37822778 AAATTTTTA
1 AAATTTTTA
37822787 AATATCTTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
45 2 0.04
46 1 0.02
47 9 0.19
48 36 0.75
ACGTcount: A:0.31, C:0.01, G:0.05, T:0.63
Consensus pattern (48 bp):
AAATTTTTATAATTTTTATAAGTTTATATCAATTTTAATAATTTTTAT
Found at i:37832026 original size:22 final size:23
Alignment explanation
Indices: 37831994--37832036 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
37831984 GAATCGAGTT
* *
37831994 TTTTTAGTTTATGTTTTTATTCG
1 TTTTTAGTTTAAGATTTTATTCG
37832017 TTTTTA-TTTAAGATTTTATT
1 TTTTTAGTTTAAGATTTTATT
37832037 ATTTGCTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.19, C:0.02, G:0.09, T:0.70
Consensus pattern (23 bp):
TTTTTAGTTTAAGATTTTATTCG
Found at i:37846007 original size:15 final size:14
Alignment explanation
Indices: 37845989--37846040 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
37845979 AATCAAAATC
37845989 AAAACAAAAAAAAAG
1 AAAA-AAAAAAAAAG
**
37846004 AAAATTAAAAAAAG
1 AAAAAAAAAAAAAG
*
37846018 AATAAAAAAAAGAAG
1 AA-AAAAAAAAAAAG
37846033 AAAGAAAA
1 AAA-AAAA
37846041 GGAGAGGCCA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
14 11 0.37
15 19 0.63
ACGTcount: A:0.83, C:0.02, G:0.10, T:0.06
Consensus pattern (14 bp):
AAAAAAAAAAAAAG
Found at i:37846013 original size:14 final size:14
Alignment explanation
Indices: 37845995--37846031 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 14
37845985 AATCAAAACA
37845995 AAAAAAAAGAAAAT
1 AAAAAAAAGAAAAT
*
37846009 TAAAAAAAG--AAT
1 AAAAAAAAGAAAAT
37846021 AAAAAAAAGAA
1 AAAAAAAAGAA
37846032 GAAAGAAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 4
0.76 0.08 0.16
Matches are distributed among these distances:
12 11 0.58
14 8 0.42
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (14 bp):
AAAAAAAAGAAAAT
Found at i:37847098 original size:15 final size:14
Alignment explanation
Indices: 37847079--37847105 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37847069 TTAAAAAAGA
37847079 AAAAAAGATCATTT
1 AAAAAAGATCATTT
37847093 AAAAAAGATCATT
1 AAAAAAGATCATT
37847106 CTCATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.26
Consensus pattern (14 bp):
AAAAAAGATCATTT
Found at i:37847290 original size:64 final size:64
Alignment explanation
Indices: 37847136--37847389 Score: 341
Period size: 64 Copynumber: 4.0 Consensus size: 64
37847126 TCATTCATAA
* *
37847136 CACATCTAGTTA-GAGCATTTGATTCATTTCGATCATAGCGTCCTAATTATTTGACATCA-CAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * ** *
37847198 TACATCTAGTTAGGAGCATTTAATTCATTTTTATCATAGCGTCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
*
37847262 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATGGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * ** * * * * *
37847326 CAAATCTAATTAGGAATAGTTGATTCATTTTGATCGTAGCATCCTAGTTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
37847390 GATACATGAA
Statistics
Matches: 169, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
62 11 0.07
63 43 0.25
64 115 0.68
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:37847870 original size:44 final size:45
Alignment explanation
Indices: 37847810--37847912 Score: 111
Period size: 44 Copynumber: 2.3 Consensus size: 45
37847800 TACCACTGGC
* * ** * *
37847810 CTTATCTCTCTGAGGTAGCAA-GAGAGCAGGTTGACGATTGCAG-T
1 CTTATCTCCCTAAGGTAGCAAGGA-AGCAGCCTGAAGATTGAAGAT
* *
37847854 CTTATCTTCCTAAGGTAGCGAGGAAGCAGCCTGAAGATTGAAGAT
1 CTTATCTCCCTAAGGTAGCAAGGAAGCAGCCTGAAGATTGAAGAT
37847899 CTTATCTCCCTAAG
1 CTTATCTCCCTAAG
37847913 CAATAGTGGA
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
44 32 0.67
45 16 0.33
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (45 bp):
CTTATCTCCCTAAGGTAGCAAGGAAGCAGCCTGAAGATTGAAGAT
Found at i:37847882 original size:176 final size:177
Alignment explanation
Indices: 37847587--37848368 Score: 997
Period size: 176 Copynumber: 4.4 Consensus size: 177
37847577 AAAGACAACA
* ** * * * * *
37847587 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCTGCCAGCCTTATCTCACTAAAGTTG
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAG
* * * *
37847652 C-AGTGGAGCAGGCT--CAATATACAAGTCTTATCTTCCTGAGGTAGCAAAGAAGCAGACTGAAG
66 CAAG-AGAGCAGGTTGACAAT-TGC-AGTCTTATCTTCCTAAGGTAGCAAAGAAGCAGACTGAAG
* * * * *
37847714 ATTTAAGATCTTATCTCCCTAAGCAGTTGTGGAACAGATCGAAGATGGTG
128 ATTGAAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGATGGCG
*
37847764 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTA-CCACTGGCCTTATCTCTCTGAGGTAG
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAG
* * * *
37847828 CAAGAGAGCAGGTTGACGATTGCAGTCTTATCTTCCTAAGGTAGCGAGGAAGCAGCCTGAAGATT
66 CAAGAGAGCAGGTTGACAATTGCAGTCTTATCTTCCTAAGGTAGCAAAGAAGCAGACTGAAGATT
37847893 GAAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGATGGCG
131 GAAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGATGGCG
* *
37847940 AATCTTATCTCCATGTTTCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTAAGGTAG
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAG
* * *
37848005 CAAGAGAGCAGGTTGGA-AATGGTAGTCTTATCTTCCTAAGGTAGC-AAGAAAGCAGACTAAAGA
66 CAAGAGAGCAGGTT-GACAATTGCAGTCTTATCTTCCTAAGGTAGCAAAG-AAGCAGACTGAAGA
37848068 TTGAAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGATGGCG
129 TTGAAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGATGGCG
* * * *
37848117 AATCTTATCTCCATGTTTCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCGCTGATGTAA
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAG
* * *
37848182 CAAGAGAGCAGGTTGA-AGATTG-AGTCTTATCTTCCTGAGGTAGAAAAGAAGTAGACTGAAGAT
66 CAAGAGAGCAGGTTGACA-ATTGCAGTCTTATCTTCCTAAGGTAGCAAAGAAGCAGACTGAAGAT
* * * * * *
37848245 T-AAGGATCTTATCTCCCTCAGCAGTAGCGGACCAGATCAAAGATGGCA
130 TGAA-GATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGATGGCG
* * * * * * * * *
37848293 AATCTTATTTCCATGTATTGGCAATGGAGTAGATTTAAACCACCAGTCTTATCTATCTGAGATAG
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAG
37848358 CAAGAGAGCAG
66 CAAGAGAGCAG
37848369 CGGTGAAGCA
Statistics
Matches: 537, Mismatches: 59, Indels: 19
0.87 0.10 0.03
Matches are distributed among these distances:
175 2 0.00
176 284 0.53
177 246 0.46
178 5 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (177 bp):
AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAG
CAAGAGAGCAGGTTGACAATTGCAGTCTTATCTTCCTAAGGTAGCAAAGAAGCAGACTGAAGATT
GAAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGATGGCG
Found at i:37848210 original size:353 final size:353
Alignment explanation
Indices: 37847585--37848368 Score: 1058
Period size: 353 Copynumber: 2.2 Consensus size: 353
37847575 CCAAAGACAA
* ** * *
37847585 CAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCTGCCAGCCTTATCTCACTAAAGT
1 CAAATCTTATCTCCATGTTTCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTAAGGT
* * * *
37847650 TGC-AGTGGAGCAGGCTCAATATACAAGTCTTATCTTCCTGAGGTAGCAAAGAAGCAGACTGAAG
66 AGCAAG-AGAGCAGGCTCAATATACAAGTCTTATCTTCCTAAGGTAGCAAAGAAGCAGACTAAAG
* * * *
37847714 ATTTAAGATCTTATCTCCCTAAGCAGTTGTGGAACAGATCGAAGATGGTGAATCTTATCTCCATG
130 ATTGAAGATCTTATCTCCCTAAGCAATAGTGGAACAGATCGAAGATGGCGAATCTTATCTCCATG
* * *
37847779 TATCGGCAATGGAGCAGATTTTACCACTGGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGA
195 TATCGGCAATGGAGCAGATTTTACCACTAGCCTTATCTCGCTGAGGTAACAAGAGAGCAGGTTGA
* ** * *
37847844 CGATTGCAGTCTTATCTTCCTAAGGTAGCGAGGAAGCAGCCTGAAGATTGAA-GATCTTATCTCC
260 AGATTGCAGTCTTATCTTCCTAAGGTAGAAAAGAAGCAGACTGAAGATT-AAGGATCTTATCTCC
* * *
37847908 CTAAGCAATAGTGGAGCAGATCGAAGATGG
324 CTAAGCAATAGCGGACCAGATCAAAGATGG
* * *
37847938 CGAATCTTATCTCCATGTTTCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTAAGGT
1 CAAATCTTATCTCCATGTTTCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTAAGGT
* * ***
37848003 AGCAAGAGAGCAGGTTGGAA-ATGGTAGTCTTATCTTCCTAAGGTAGC-AAGAAAGCAGACTAAA
66 AGCAAGAGAGCAGGCT-CAATATACAAGTCTTATCTTCCTAAGGTAGCAAAG-AAGCAGACTAAA
*
37848066 GATTGAAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCAT
129 GATTGAAGATCTTATCTCCCTAAGCAATAGTGGAACAGATCGAAGATGGCGAATCTTATCTCCAT
* *
37848131 GTTTCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCGCTGATGTAACAAGAGAGCAGGTT
194 GTATCGGCAATGGAGCAGATTTTA-CCACTAGCCTTATCTCGCTGAGGTAACAAGAGAGCAGGTT
* *
37848196 GAAGATTG-AGTCTTATCTTCCTGAGGTAGAAAAGAAGTAGACTGAAGATTAAGGATCTTATCTC
258 GAAGATTGCAGTCTTATCTTCCTAAGGTAGAAAAGAAGCAGACTGAAGATTAAGGATCTTATCTC
* *
37848260 CCTCAGCAGTAGCGGACCAGATCAAAGATGG
323 CCTAAGCAATAGCGGACCAGATCAAAGATGG
* * * * * * *
37848291 CAAATCTTATTTCCATGTATT-GGCAATGGAGTAGATTTAAACCACCAGTCTTATCTATCTGAGA
1 CAAATCTTATCTCCATGT-TTCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTAAGG
37848355 TAGCAAGAGAGCAG
65 TAGCAAGAGAGCAG
37848369 CGGTGAAGCA
Statistics
Matches: 376, Mismatches: 49, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
352 5 0.01
353 322 0.86
354 49 0.13
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (353 bp):
CAAATCTTATCTCCATGTTTCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTAAGGT
AGCAAGAGAGCAGGCTCAATATACAAGTCTTATCTTCCTAAGGTAGCAAAGAAGCAGACTAAAGA
TTGAAGATCTTATCTCCCTAAGCAATAGTGGAACAGATCGAAGATGGCGAATCTTATCTCCATGT
ATCGGCAATGGAGCAGATTTTACCACTAGCCTTATCTCGCTGAGGTAACAAGAGAGCAGGTTGAA
GATTGCAGTCTTATCTTCCTAAGGTAGAAAAGAAGCAGACTGAAGATTAAGGATCTTATCTCCCT
AAGCAATAGCGGACCAGATCAAAGATGG
Found at i:37848406 original size:100 final size:100
Alignment explanation
Indices: 37848277--37848465 Score: 270
Period size: 100 Copynumber: 1.9 Consensus size: 100
37848267 AGTAGCGGAC
* * *
37848277 CAGATCAAAGATGGCAAATCTTATTTCCATGTATTGGCAATGGAGTAGATTTAAACCACCAGTCT
1 CAGATCAAAGATGGCAAATCTTATCTCCATGTATTGGCAATGGAGCAGATTTAAACCACCAGCCT
* *
37848342 TATCTATCTGAGATAGCAAGAGAGCAGCGGTGAAG
66 TATCTATCTAAGACAGCAAGAGAGCAGCGGTGAAG
* * * * *
37848377 CAGATCGAAGATGGCGAATCTTATCTCCATGTATTGGCAATGGAGCAGATTTTAGCCACTAGCCT
1 CAGATCAAAGATGGCAAATCTTATCTCCATGTATTGGCAATGGAGCAGATTTAAACCACCAGCCT
* *
37848442 TATCTCTCTAAGGCAGCAAGAGAG
66 TATCTATCTAAGACAGCAAGAGAG
37848466 TAGGTTGGCG
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
100 77 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (100 bp):
CAGATCAAAGATGGCAAATCTTATCTCCATGTATTGGCAATGGAGCAGATTTAAACCACCAGCCT
TATCTATCTAAGACAGCAAGAGAGCAGCGGTGAAG
Found at i:37855863 original size:6 final size:6
Alignment explanation
Indices: 37855852--37855879 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
37855842 CTCTCTTTTA
37855852 TTTATT TTTATT TTTATT TTTATT TTTA
1 TTTATT TTTATT TTTATT TTTATT TTTA
37855880 AATTTTTGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTATT
Found at i:37856535 original size:3 final size:3
Alignment explanation
Indices: 37856527--37856560 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
37856517 TATAAATACA
*
37856527 TAT TAT TAT TAT TAT TAT TAT TAT AAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
37856561 TAACATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:37857458 original size:30 final size:29
Alignment explanation
Indices: 37857420--37857486 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 29
37857410 AAATTTTTAG
37857420 AAAA-CAATTAAATCCACATAAAATAATT
1 AAAATCAATTAAATCCACATAAAATAATT
* * *
37857448 AAACATCAATTAATTTCATATAAAATAATT
1 AAA-ATCAATTAAATCCACATAAAATAATT
37857478 AAAATCAAT
1 AAAATCAAT
37857487 CAACATATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 3 0.09
29 7 0.21
30 24 0.71
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (29 bp):
AAAATCAATTAAATCCACATAAAATAATT
Found at i:37861778 original size:60 final size:60
Alignment explanation
Indices: 37861685--37861811 Score: 247
Period size: 60 Copynumber: 2.1 Consensus size: 60
37861675 AATTTTTAGT
37861685 GAATTTCTAAAGTTAGAAAAGGGGATTCATATCGCTCTGACCCTATTCCATCAAAACTCA
1 GAATTTCTAAAGTTAGAAAAGGGGATTCATATCGCTCTGACCCTATTCCATCAAAACTCA
37861745 GAATTTCTAAAGTTAGAAAAGGGGATTCATATCGCTCTGACCCTATTCCATCAAAACTCA
1 GAATTTCTAAAGTTAGAAAAGGGGATTCATATCGCTCTGACCCTATTCCATCAAAACTCA
37861805 -AATTTCT
1 GAATTTCT
37861812 CACAAAATAC
Statistics
Matches: 67, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
59 7 0.10
60 60 0.90
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (60 bp):
GAATTTCTAAAGTTAGAAAAGGGGATTCATATCGCTCTGACCCTATTCCATCAAAACTCA
Found at i:37873188 original size:795 final size:796
Alignment explanation
Indices: 37871322--37873222 Score: 3525
Period size: 798 Copynumber: 2.4 Consensus size: 796
37871312 GCTCAGCATT
37871322 ATCCTTGTGAGCAACATCTTTATGTTTATTAGTTTCCAATTCAGAATGTTCTCCTGGAACGTTTA
1 ATCCTTGTGAGCAACATCTTTATGTTTATTAGTTTCCAATTCAGAATGTTCTCCTGGAACGTTTA
37871387 TTCCCCCATCGGCCATCTTTTTCCTAGCAGTTGACCTCTTATTTCTGTCAGAAGACAAACTCCGA
66 TTCCCCCATCGGCCATCTTTTTCCTAGCAGTTGACCTCTTATTTCTGTCAGAAGACAAACTCCGA
37871452 GAGGTTTCATCCACATGAATTTGGCTTCCCAGATTTGCATCATTCAAAGCCAAACTTGGTCCATT
131 GAGGTTTCATCCACATGAATTTGGCTTCCCAGATTTGCATCATTCAAAGCCAAACTTGGTCCATT
37871517 ATGAATCAAATTTTCTTCAAGTACACGGCCTGAATCCAACGCATCTTTCCCAGATTCAACAACTA
196 ATGAATCAAATTTTCTTCAAGTACACGGCCTGAATCCAACGCATCTTTCCCAGATTCAACAACTA
*
37871582 AAGCACCATTTACTTTAGAATCATGGTGGATGGCATATTTGTTTCTCTGGGGCACTTGATTTGTT
261 AAGCACCATTTTCTTTAGAATCATGGTGGATGGCATATTTGTTTCTCTGGGGCACTTGATTTGTT
*
37871647 TCACTAACTTCCTGCATTTTCATTGATGAGATCAGACCAGATTCAGATATTTCTCCACCTGCAGA
326 TCACTAACTTCCTGCATTTTCATTGAAGAGATCAGACCAGATTCAGATATTTCTCCACCTGCAGA
37871712 ACGTTTTCCAAGAAAAGAAACTGGATCACCTTTACTGCCCAAATCTTTGTCTTTAATGGCTTCTA
391 ACGTTTTCCAAGAAAAGAAACTGGATCACCTTTACTGCCCAAATCTTTGTCTTTAATGGCTTCTA
37871777 CAGCCTGAAAAGTTTCCACATGAACATCTTTTGCAGAAGAGACATCACTACCTCCTTGACTAGGA
456 CAGCCTGAAAAGTTTCCACATGAACATCTTTTGCAGAAGAGACATCACTACCTCCTTGACTAGGA
*
37871842 TTTGATTTTTGCCTTTTCCTGTTCTTCTTCCCACCGCTCGCATTGGCCGTCGACAAATGGTTTTG
521 TTTGATTTTTGCCTTTTCCTGTTCTTCTTCCCACCGCTCGCATTGGCCGTCAACAAATGGTTTTG
37871907 TTTTACGGATTCAGCATTCAAGGGATCTACGACAACCATCGTATTTTCCAATTTCTGACCTAAAG
586 TTTTACGGATTCAGCATTCAAGGGATCTACGACAACCATCGTATTTTCCAATTTCTGACCTAAAG
* * * *
37871972 TACACTCAGTGGTTACAGTATTGAGATCAGTAGCTTGTTCTCCATTTTCTATTAAAGAATTGTCA
651 TACACACAGAGGTT--AGTATTGAGATCAATAGCTTGTTCTACATTTTCTATTAAAGAATTGTCA
37872037 TTAACATCTTTCTTCTCGGCTTTGCGCTTTTTCTTTGATACAGGCCGAGATTGAAAGGAATCTTC
714 TTAACATCTTTCTTCTCGGCTTTGCGCTTTTTCTTTGATACAGGCCGAGATTGAAAGGAATCTTC
37872102 TTTTGACTCATGTTCCTG
779 TTTTGACTCATGTTCCTG
*
37872120 GTCCTTGTGAGCAACATCTTTATGTTTATTAGTTTCCAATTCAGAATGTTCTCCTGGAACGTTTA
1 ATCCTTGTGAGCAACATCTTTATGTTTATTAGTTTCCAATTCAGAATGTTCTCCTGGAACGTTTA
37872185 TTCCCCCATCGGCCATCTTTTTCCTAGCAGTTGACCTCTTATTTCTGTCAGAAGACAAACTCCGA
66 TTCCCCCATCGGCCATCTTTTTCCTAGCAGTTGACCTCTTATTTCTGTCAGAAGACAAACTCCGA
37872250 GAGGTTTCATCCACATGAATTTGGCTTCCCAGATTTGCATCATTCAAAGCCAAACTTGGTCCATT
131 GAGGTTTCATCCACATGAATTTGGCTTCCCAGATTTGCATCATTCAAAGCCAAACTTGGTCCATT
37872315 ATGAATCAAATTTTCTTCAAGTACACGGCCTGAATCCAACGCATCTTTCCCAGATTCAACAACTA
196 ATGAATCAAATTTTCTTCAAGTACACGGCCTGAATCCAACGCATCTTTCCCAGATTCAACAACTA
37872380 AAGCACCATTTTCTTTAGAATCATGGTGGATGGCATATTTGTTTCTCTGGGGCACTTGATTTGTT
261 AAGCACCATTTTCTTTAGAATCATGGTGGATGGCATATTTGTTTCTCTGGGGCACTTGATTTGTT
*
37872445 TCACTAACTTCCTGCATTTTCATTGAAGAGATCAGACCAGTTTCAGATATTTCTCCACCTGCAGA
326 TCACTAACTTCCTGCATTTTCATTGAAGAGATCAGACCAGATTCAGATATTTCTCCACCTGCAGA
*
37872510 ATGTTTTCCAAGAAAAGAAACTGGATCACCTTTACTGCCCAAATCTTTGTCTTTAATGGCTTCTA
391 ACGTTTTCCAAGAAAAGAAACTGGATCACCTTTACTGCCCAAATCTTTGTCTTTAATGGCTTCTA
37872575 CAGCCTGAAAAGTTTCCACATGAACATCTTTTGCAGAAGAGACATCACTACCTCCTTGACTAGGA
456 CAGCCTGAAAAGTTTCCACATGAACATCTTTTGCAGAAGAGACATCACTACCTCCTTGACTAGGA
* *
37872640 TTTGATTTTTGCCTTTTCCTGTTCTTCTTCCCACCGTTTGCATTGGCCGTCAACAAATGGTTTTG
521 TTTGATTTTTGCCTTTTCCTGTTCTTCTTCCCACCGCTCGCATTGGCCGTCAACAAATGGTTTTG
* * * * *
37872705 TTTTACGGATTCAGTATTCAAGGGGTCTACGACAGCCCTCGTATTTTCCAGTTTCTGACCTAAAG
586 TTTTACGGATTCAGCATTCAAGGGATCTACGACAACCATCGTATTTTCCAATTTCTGACCTAAAG
*
37872770 TGCACACAGAGGTT-GTATTGAGATCAATAGCTTGTTCTACATTTTCTATTAAAGAATTGTCATT
651 TACACACAGAGGTTAGTATTGAGATCAATAGCTTGTTCTACATTTTCTATTAAAGAATTGTCATT
* *
37872834 AACATCTTTCTTCTTGGCTTTGCGCTTTTTCTTTGATGCAGGCCGAGATTGAAAGGAATCTTCTT
716 AACATCTTTCTTCTCGGCTTTGCGCTTTTTCTTTGATACAGGCCGAGATTGAAAGGAATCTTCTT
37872899 TTGACTCATGTTCCTG
781 TTGACTCATGTTCCTG
37872915 ATCCTTGTGAGCAACATCTTTATGTTTATTAGTTTCCAATTCAGAATGTTCTCCTGGAACGTTTA
1 ATCCTTGTGAGCAACATCTTTATGTTTATTAGTTTCCAATTCAGAATGTTCTCCTGGAACGTTTA
*
37872980 TTCCCCCATCGGCCATCCTTTTCCTAGCAGTTGACCTCTTATTTCTGTCAGAAGACAAACTCCGA
66 TTCCCCCATCGGCCATCTTTTTCCTAGCAGTTGACCTCTTATTTCTGTCAGAAGACAAACTCCGA
* * * *
37873045 GAGGCTTCATCCACATGAATTTGGTTTCCCAGATTTGCGTCATTCAAAGCCAAACTTTGTCCATT
131 GAGGTTTCATCCACATGAATTTGGCTTCCCAGATTTGCATCATTCAAAGCCAAACTTGGTCCATT
* * *
37873110 ATGAATCAAATTTTCCTCAAGTACATGGCCTGAATCCAATGCATCTTTCCCAGATTCAACAACTA
196 ATGAATCAAATTTTCTTCAAGTACACGGCCTGAATCCAACGCATCTTTCCCAGATTCAACAACTA
37873175 AAGCACCATTTTCTTTAGAATCATGGTGGATGGCATATTTGTTTCTCT
261 AAGCACCATTTTCTTTAGAATCATGGTGGATGGCATATTTGTTTCTCT
37873223 TTTTAGTTTT
Statistics
Matches: 1074, Mismatches: 29, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
795 426 0.40
798 648 0.60
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.35
Consensus pattern (796 bp):
ATCCTTGTGAGCAACATCTTTATGTTTATTAGTTTCCAATTCAGAATGTTCTCCTGGAACGTTTA
TTCCCCCATCGGCCATCTTTTTCCTAGCAGTTGACCTCTTATTTCTGTCAGAAGACAAACTCCGA
GAGGTTTCATCCACATGAATTTGGCTTCCCAGATTTGCATCATTCAAAGCCAAACTTGGTCCATT
ATGAATCAAATTTTCTTCAAGTACACGGCCTGAATCCAACGCATCTTTCCCAGATTCAACAACTA
AAGCACCATTTTCTTTAGAATCATGGTGGATGGCATATTTGTTTCTCTGGGGCACTTGATTTGTT
TCACTAACTTCCTGCATTTTCATTGAAGAGATCAGACCAGATTCAGATATTTCTCCACCTGCAGA
ACGTTTTCCAAGAAAAGAAACTGGATCACCTTTACTGCCCAAATCTTTGTCTTTAATGGCTTCTA
CAGCCTGAAAAGTTTCCACATGAACATCTTTTGCAGAAGAGACATCACTACCTCCTTGACTAGGA
TTTGATTTTTGCCTTTTCCTGTTCTTCTTCCCACCGCTCGCATTGGCCGTCAACAAATGGTTTTG
TTTTACGGATTCAGCATTCAAGGGATCTACGACAACCATCGTATTTTCCAATTTCTGACCTAAAG
TACACACAGAGGTTAGTATTGAGATCAATAGCTTGTTCTACATTTTCTATTAAAGAATTGTCATT
AACATCTTTCTTCTCGGCTTTGCGCTTTTTCTTTGATACAGGCCGAGATTGAAAGGAATCTTCTT
TTGACTCATGTTCCTG
Found at i:37882157 original size:18 final size:18
Alignment explanation
Indices: 37882130--37882222 Score: 123
Period size: 18 Copynumber: 5.2 Consensus size: 18
37882120 TACGACCGTT
37882130 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
37882148 TACGGCACTATTTACGTA
1 TACGGTACTATTCACGTA
* *
37882166 TACAGTACTATTTACGTA
1 TACGGTACTATTCACGTA
**
37882184 TACGACACTATTCACGTA
1 TACGGTACTATTCACGTA
*
37882202 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
37882220 TAC
1 TAC
37882223 AGTAGTTGGG
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:37886862 original size:18 final size:18
Alignment explanation
Indices: 37886839--37887003 Score: 258
Period size: 18 Copynumber: 9.2 Consensus size: 18
37886829 TACGACCGTT
37886839 TACGGCACTATTCACGTA
1 TACGGCACTATTCACGTA
37886857 TACGGCACTATTCACGTA
1 TACGGCACTATTCACGTA
* *
37886875 TACAGTACTATTCACGTA
1 TACGGCACTATTCACGTA
37886893 TACGGCACTATTCACGTA
1 TACGGCACTATTCACGTA
* *
37886911 TACAGTACTATTCACGTA
1 TACGGCACTATTCACGTA
37886929 TACGGCACTATTCACGTA
1 TACGGCACTATTCACGTA
* *
37886947 TACAGTACTATTCACGTA
1 TACGGCACTATTCACGTA
37886965 TACGGCACTATTCACGTA
1 TACGGCACTATTCACGTA
* *
37886983 TACGGTACTGTTCACGTA
1 TACGGCACTATTCACGTA
37887001 TAC
1 TAC
37887004 AGTAGTTGGG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 133 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (18 bp):
TACGGCACTATTCACGTA
Found at i:37886892 original size:36 final size:36
Alignment explanation
Indices: 37886845--37887003 Score: 300
Period size: 36 Copynumber: 4.4 Consensus size: 36
37886835 CGTTTACGGC
37886845 ACTATTCACGTATACGGCACTATTCACGTATACAGT
1 ACTATTCACGTATACGGCACTATTCACGTATACAGT
37886881 ACTATTCACGTATACGGCACTATTCACGTATACAGT
1 ACTATTCACGTATACGGCACTATTCACGTATACAGT
37886917 ACTATTCACGTATACGGCACTATTCACGTATACAGT
1 ACTATTCACGTATACGGCACTATTCACGTATACAGT
*
37886953 ACTATTCACGTATACGGCACTATTCACGTATACGGT
1 ACTATTCACGTATACGGCACTATTCACGTATACAGT
*
37886989 ACTGTTCACGTATAC
1 ACTATTCACGTATAC
37887004 AGTAGTTGGG
Statistics
Matches: 121, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 121 1.00
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (36 bp):
ACTATTCACGTATACGGCACTATTCACGTATACAGT
Found at i:37891073 original size:11 final size:11
Alignment explanation
Indices: 37891057--37891087 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
37891047 ATACCCATAC
37891057 CCCATACCTTG
1 CCCATACCTTG
*
37891068 CCCATACCTTT
1 CCCATACCTTG
37891079 CCCATACCT
1 CCCATACCT
37891088 ACCCATACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.48, G:0.03, T:0.29
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:37893899 original size:19 final size:19
Alignment explanation
Indices: 37893853--37893900 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
37893843 GTATATATTT
37893853 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
37893871 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
37893890 TAAATTTTATT
1 TAAATTTTATT
37893901 CATATTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 4 0.15
19 23 0.85
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:37893949 original size:42 final size:42
Alignment explanation
Indices: 37893912--37893992 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
37893902 ATATTTTATT
* *
37893912 TTATCTTTTAGTAGTTTATTAGAATAAGGGAATTATTTTTCC
1 TTATCTTTTAGTAGTTGATTAGAATAAAGGAATTATTTTTCC
* *
37893954 TTATGTTTTAGTAGTTGATTAGAATAAATGAATTATTTT
1 TTATCTTTTAGTAGTTGATTAGAATAAAGGAATTATTTT
37893993 CCCAATTTAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.31, C:0.04, G:0.15, T:0.51
Consensus pattern (42 bp):
TTATCTTTTAGTAGTTGATTAGAATAAAGGAATTATTTTTCC
Found at i:37895168 original size:22 final size:22
Alignment explanation
Indices: 37895119--37895169 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
37895109 CAATTAGATT
* **
37895119 TATTTAAAATAAAATTTTAAAA
1 TATTAAAAATAAAAAATTAAAA
* *
37895141 TTTTAAAAATAAAAAATTATAA
1 TATTAAAAATAAAAAATTAAAA
37895163 TATTAAA
1 TATTAAA
37895170 TATTTAAATA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (22 bp):
TATTAAAAATAAAAAATTAAAA
Found at i:37895348 original size:31 final size:27
Alignment explanation
Indices: 37895311--37895366 Score: 76
Period size: 30 Copynumber: 2.0 Consensus size: 27
37895301 ATAATATTAA
*
37895311 TAAAATTTTAAAATATATAATTATAAATTT
1 TAAAAATTTAAAATA-AT-A-TATAAATTT
37895341 TAAAAATTTAAAATAATATATAAATT
1 TAAAAATTTAAAATAATATATAAATT
37895367 GAAATTGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 8 0.32
28 1 0.04
29 2 0.08
30 14 0.56
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (27 bp):
TAAAAATTTAAAATAATATATAAATTT
Found at i:37895620 original size:27 final size:26
Alignment explanation
Indices: 37895577--37895628 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
37895567 AATTTCAACT
*
37895577 AATTTATTTTTAATTATCATATTTTTG
1 AATTTATTTATAATTAT-ATATTTTTG
*
37895604 AATTT-TTTATAATTTATATGTTTTT
1 AATTTATTTATAA-TTATATATTTTT
37895629 TTCTAGATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (26 bp):
AATTTATTTATAATTATATATTTTTG
Found at i:37895630 original size:19 final size:21
Alignment explanation
Indices: 37895606--37895649 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
37895596 TATTTTTGAA
*
37895606 TTTTTTATA-AT-TTATATGT
1 TTTTTTATAGATGTTATATAT
*
37895625 TTTTTTCTAGATGTTATATAT
1 TTTTTTATAGATGTTATATAT
37895646 TTTT
1 TTTT
37895650 ATTTTTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 8 0.38
20 2 0.10
21 11 0.52
ACGTcount: A:0.23, C:0.02, G:0.07, T:0.68
Consensus pattern (21 bp):
TTTTTTATAGATGTTATATAT
Found at i:37898598 original size:4 final size:4
Alignment explanation
Indices: 37898589--37898620 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
37898579 ATCTTAAGAT
37898589 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
37898621 AGTCTCACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:37899353 original size:36 final size:36
Alignment explanation
Indices: 37899308--37899382 Score: 89
Period size: 36 Copynumber: 2.1 Consensus size: 36
37899298 TACATTTTTA
* * * *
37899308 ATTAAAATTAA-ATTTTATTAATTTATTAATTAACAT
1 ATTAAAATTAATAATTT-TTAAATAATTAATTAAAAT
*
37899344 ATTATAATTAATAATTTTTAAATAATTAATTAAAAT
1 ATTAAAATTAATAATTTTTAAATAATTAATTAAAAT
37899380 ATT
1 ATT
37899383 TTTAACATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
36 29 0.88
37 4 0.12
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (36 bp):
ATTAAAATTAATAATTTTTAAATAATTAATTAAAAT
Found at i:37899364 original size:28 final size:26
Alignment explanation
Indices: 37899301--37899364 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 26
37899291 TAAATATTAC
*
37899301 ATTTTTAATTAAAATTAAATTTTATTA
1 ATTTTTAATTAAAATTAAA-TTTAATA
37899328 ATTTATTAATTAACATATTATAA-TTAATA
1 ATTT-TTAATTAA-A-ATTA-AATTTAATA
37899357 ATTTTTAA
1 ATTTTTAA
37899365 ATAATTAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
27 4 0.12
28 12 0.38
29 10 0.31
30 4 0.12
31 2 0.06
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (26 bp):
ATTTTTAATTAAAATTAAATTTAATA
Done.