Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 12 of 167
Found at i:3941866 original size:40 final size:40
Alignment explanation
Indices: 3941817--3941897 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
3941807 TTTCACTTGG
3941817 TATAATTTGACTTAGTGCCTTACTACATATAGGGCACTTA
1 TATAATTTGACTTAGTGCCTTACTACATATAGGGCACTTA
3941857 TATAATTTGACTTAGTGCCTTACTACATATAGGGCACTTA
1 TATAATTTGACTTAGTGCCTTACTACATATAGGGCACTTA
3941897 T
1 T
3941898 GGTTAACTGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (40 bp):
TATAATTTGACTTAGTGCCTTACTACATATAGGGCACTTA
Found at i:3943784 original size:36 final size:36
Alignment explanation
Indices: 3943744--3943834 Score: 112
Period size: 36 Copynumber: 2.5 Consensus size: 36
3943734 TAGTCAGTCA
* * *
3943744 TCAGTATTAATCAGTTATTTAGTAATAATCATTTAT
1 TCAGTAATAATCAGTTATTTAGTAACAATCAATTAT
* *
3943780 TCAGTAATAGTC-GTTTATTTAGTAACAGTCAATTAT
1 TCAGTAATAATCAG-TTATTTAGTAACAATCAATTAT
*
3943816 TCAATAATAATCAGTTATT
1 TCAGTAATAATCAGTTATT
3943835 CAATACCTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
35 1 0.02
36 44 0.96
37 1 0.02
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (36 bp):
TCAGTAATAATCAGTTATTTAGTAACAATCAATTAT
Found at i:3943839 original size:18 final size:18
Alignment explanation
Indices: 3943726--3943836 Score: 91
Period size: 18 Copynumber: 6.2 Consensus size: 18
3943716 ATCTTTATTG
* * *
3943726 TTCAGTATTAGTCAGTCA
1 TTCAGTAATAATCAGTTA
*
3943744 -TCAGTATTAATCAGTTA
1 TTCAGTAATAATCAGTTA
* *
3943761 TTTAGTAATAATCATTTA
1 TTCAGTAATAATCAGTTA
*
3943779 TTCAGTAATAGTC-GTTTA
1 TTCAGTAATAATCAG-TTA
* * * *
3943797 TTTAGTAACAGTCAATTA
1 TTCAGTAATAATCAGTTA
*
3943815 TTCAATAATAATCAGTTA
1 TTCAGTAATAATCAGTTA
3943833 TTCA
1 TTCA
3943837 ATACCTTTAT
Statistics
Matches: 74, Mismatches: 16, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
17 15 0.20
18 59 0.80
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42
Consensus pattern (18 bp):
TTCAGTAATAATCAGTTA
Found at i:3944021 original size:6 final size:6
Alignment explanation
Indices: 3944010--3944036 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
3944000 TGTCGAATCG
3944010 GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTA
3944037 GTCGGCACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:3944187 original size:20 final size:20
Alignment explanation
Indices: 3944162--3944201 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
3944152 TTCAGTTTTC
3944162 AATCAGTATATATT-TCAATT
1 AATCAG-ATATATTCTCAATT
3944182 AATCAGATATATTCTCAATT
1 AATCAGATATATTCTCAATT
3944202 CAATATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.42
Consensus pattern (20 bp):
AATCAGATATATTCTCAATT
Found at i:3944209 original size:16 final size:15
Alignment explanation
Indices: 3944169--3944218 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 15
3944159 TTCAATCAGT
3944169 ATATATTTCAATTAATCA
1 ATATATTTCAA-T--TCA
3944187 GATATATTCTCAATTCA
1 -ATATATT-TCAATTCA
3944204 ATATATTTCAATTCA
1 ATATATTTCAATTCA
3944219 CTTTATATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 8 0.27
16 7 0.23
17 3 0.10
19 8 0.27
20 4 0.13
ACGTcount: A:0.40, C:0.14, G:0.02, T:0.44
Consensus pattern (15 bp):
ATATATTTCAATTCA
Found at i:3945278 original size:16 final size:16
Alignment explanation
Indices: 3945254--3945321 Score: 50
Period size: 16 Copynumber: 4.1 Consensus size: 16
3945244 TTAAATTTAT
*
3945254 TTATTATATAAATATC
1 TTATAATATAAATATC
*
3945270 TTATAATATAATTA-C
1 TTATAATATAAATATC
*
3945285 TTA-ATTAATAAATATC
1 TTATAAT-ATAAATATC
3945301 TTTTATAAATAGTAAATATC
1 --TTAT-AATA-TAAATATC
3945321 T
1 T
3945322 ATTAGTAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
14 2 0.05
15 10 0.25
16 13 0.32
18 4 0.10
19 1 0.03
20 10 0.25
ACGTcount: A:0.46, C:0.06, G:0.01, T:0.47
Consensus pattern (16 bp):
TTATAATATAAATATC
Found at i:3951286 original size:9 final size:9
Alignment explanation
Indices: 3951273--3951313 Score: 50
Period size: 8 Copynumber: 4.8 Consensus size: 9
3951263 AATTTTAAAG
3951273 ATTTTTTTA
1 ATTTTTTTA
*
3951282 CTTTTTTTA
1 ATTTTTTTA
3951291 A-TTTTTTA
1 ATTTTTTTA
*
3951299 A-ATTTTTA
1 ATTTTTTTA
3951307 ATTTTTT
1 ATTTTTT
3951314 AAAATTTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
8 15 0.56
9 12 0.44
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (9 bp):
ATTTTTTTA
Found at i:3951288 original size:8 final size:8
Alignment explanation
Indices: 3951284--3951315 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
3951274 TTTTTTTACT
3951284 TTTTTTAA
1 TTTTTTAA
3951292 TTTTTTAA
1 TTTTTTAA
*
3951300 ATTTTTAA
1 TTTTTTAA
3951308 TTTTTTAA
1 TTTTTTAA
3951316 AATTTAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (8 bp):
TTTTTTAA
Found at i:3951304 original size:16 final size:16
Alignment explanation
Indices: 3951285--3951316 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
3951275 TTTTTTACTT
3951285 TTTTTAATTTTTTAAA
1 TTTTTAATTTTTTAAA
3951301 TTTTTAATTTTTTAAA
1 TTTTTAATTTTTTAAA
3951317 ATTTAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTTAATTTTTTAAA
Found at i:3954688 original size:14 final size:15
Alignment explanation
Indices: 3954663--3954695 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
3954653 AAGGTTTTCA
*
3954663 AATTATTATTTAATT
1 AATTATTATTTAAAT
3954678 AATTA-TATTTAAAT
1 AATTATTATTTAAAT
3954692 AATT
1 AATT
3954696 GAAGTTTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AATTATTATTTAAAT
Found at i:3955537 original size:16 final size:15
Alignment explanation
Indices: 3955516--3955558 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
3955506 CCAAATCCTG
3955516 AAATTATAAAAAATTT
1 AAATTATAAAAAA-TT
**
3955532 AAATTATATCAAATT
1 AAATTATAAAAAATT
*
3955547 AAAATATAAAAA
1 AAATTATAAAAA
3955559 TCAAATAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (15 bp):
AAATTATAAAAAATT
Found at i:3960437 original size:18 final size:17
Alignment explanation
Indices: 3960409--3960443 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
3960399 ATTATTAAGA
*
3960409 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
3960426 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
3960444 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:3960575 original size:144 final size:147
Alignment explanation
Indices: 3960397--3960668 Score: 487
Period size: 144 Copynumber: 1.9 Consensus size: 147
3960387 ATAAGAATAT
*
3960397 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
3960462 AAATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAA-AATAATTTA
66 AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
3960524 CCAAAACAAATTTCTGC
131 CCAAAACAAATTTCTGC
3960541 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
3960606 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAAT--ATAATCTTATTAAAATTTAAATAACAATAA
3960669 CAATAATCAT
Statistics
Matches: 121, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
144 91 0.75
145 2 0.02
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
CCAAAACAAATTTCTGC
Found at i:3960581 original size:18 final size:17
Alignment explanation
Indices: 3960553--3960587 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
3960543 ATTATTAAGA
*
3960553 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
3960570 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
3960588 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:3960798 original size:44 final size:45
Alignment explanation
Indices: 3960749--3960843 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
3960739 TTACACCTCT
* *
3960749 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
3960793 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
3960838 ATTACA
1 ATTACA
3960844 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:3960843 original size:16 final size:16
Alignment explanation
Indices: 3960822--3960854 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
3960812 TTGATTTGCT
*
3960822 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
3960838 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
3960854 A
1 A
3960855 ATCCAATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.36, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:3960864 original size:21 final size:21
Alignment explanation
Indices: 3960835--3960877 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
3960825 ACACCTCTAT
*
3960835 TCCATTACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
3960856 TCCAATACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
3960877 T
1 T
3960878 ACAGCGAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (21 bp):
TCCAATACACCTCTAATCCAA
Found at i:3961152 original size:28 final size:29
Alignment explanation
Indices: 3961120--3961176 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
3961110 GAAATGATAG
*
3961120 TTTAAATA-TCAAAATAAAATAA-AAAATA
1 TTTAAATACT-AAAATAAAAAAATAAAATA
*
3961148 TTTAAGTACTAAAATAAAAAAATAAAATA
1 TTTAAATACTAAAATAAAAAAATAAAATA
3961177 ATTCAAGGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 18 0.72
29 7 0.28
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.28
Consensus pattern (29 bp):
TTTAAATACTAAAATAAAAAAATAAAATA
Found at i:3973608 original size:2 final size:2
Alignment explanation
Indices: 3973601--3973626 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3973591 TCTAGTCATC
3973601 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
3973627 ATTGTATACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3983291 original size:16 final size:15
Alignment explanation
Indices: 3983270--3983317 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
3983260 GATGTGAATA
3983270 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
3983286 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
3983301 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
3983317 A
1 A
3983318 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:3983293 original size:24 final size:24
Alignment explanation
Indices: 3983266--3983321 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
3983256 TAATGATGTG
*
3983266 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
3983290 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
3983314 AATAATAA
1 AATAATAA
3983322 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:3983300 original size:8 final size:8
Alignment explanation
Indices: 3983266--3983317 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
3983256 TAATGATGTG
*
3983266 AATAATAA
1 AATATTAA
3983274 AATATATAA
1 AATAT-TAA
3983283 AATA-TAA
1 AATATTAA
3983290 AATATTAA
1 AATATTAA
*
3983298 AATATCAA
1 AATATTAA
*
3983306 AATATTAG
1 AATATTAA
3983314 AATA
1 AATA
3983318 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:3983595 original size:25 final size:25
Alignment explanation
Indices: 3983559--3983694 Score: 72
Period size: 25 Copynumber: 5.6 Consensus size: 25
3983549 AGAAAAATAT
*
3983559 ATATATAAATAATATAATATTAAAG
1 ATATATACATAATATAATATTAAAG
* * * *
3983584 ATATATACATAAAATAGTATAAAATAT
1 ATATATACATAATATAATAT-TAA-AG
*
3983611 ATATATACACGTAATATAGA-ATTTAA-
1 ATATATACA--TAATATA-ATATTAAAG
* * *
3983637 A-ATGTACCTAATAT-AT-TAAAAG
1 ATATATACATAATATAATATTAAAG
*
3983659 A-ATATATATAATATAATATT-AAG
1 ATATATACATAATATAATATTAAAG
*
3983682 AAATATA-ATAATA
1 ATATATACATAATA
3983695 ACAAAAAAGG
Statistics
Matches: 84, Mismatches: 17, Indels: 22
0.68 0.14 0.18
Matches are distributed among these distances:
21 4 0.05
22 11 0.13
23 18 0.21
24 6 0.07
25 22 0.26
26 3 0.04
27 11 0.13
28 1 0.01
29 8 0.10
ACGTcount: A:0.57, C:0.04, G:0.05, T:0.35
Consensus pattern (25 bp):
ATATATACATAATATAATATTAAAG
Found at i:3983629 original size:29 final size:27
Alignment explanation
Indices: 3983480--3983629 Score: 96
Period size: 25 Copynumber: 5.6 Consensus size: 27
3983470 AATATTAAAA
* * *
3983480 ATATGTACATAATATAGTGTTAAA-A-
1 ATATATACATAATATAGTATAAAATAT
* *
3983505 ATACATACATAATATAGT-TAAGATAT
1 ATATATACATAATATAGTATAAAATAT
* * * *
3983531 ATACATAAGATAACAT-GTAGAAAAATAT
1 ATATAT-ACATAATATAGTA-TAAAATAT
* * * *
3983559 ATATATAAATAATATAATAT-TAA-AG
1 ATATATACATAATATAGTATAAAATAT
*
3983584 ATATATACATAAAATAGTATAAAATAT
1 ATATATACATAATATAGTATAAAATAT
3983611 ATATATACACGTAATATAG
1 ATATATACA--TAATATAG
3983630 AATTTAAAAT
Statistics
Matches: 94, Mismatches: 21, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
24 3 0.03
25 35 0.37
26 12 0.13
27 24 0.26
28 13 0.14
29 7 0.07
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.33
Consensus pattern (27 bp):
ATATATACATAATATAGTATAAAATAT
Found at i:3984218 original size:30 final size:30
Alignment explanation
Indices: 3984183--3984315 Score: 140
Period size: 30 Copynumber: 4.7 Consensus size: 30
3984173 GTACAAGTGA
* *
3984183 TGGTGGAGAAGGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
3984213 TGGTGGAAAAAGAGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
* *
3984243 TAGTGG-AAA--A---G---GTGGAGTTAG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
* *
3984264 AGGTGGAAAAGGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
3984294 TGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGAAAAGGAGTGGCTAGT
3984316 TGAGAAAAAG
Statistics
Matches: 83, Mismatches: 11, Indels: 18
0.74 0.10 0.16
Matches are distributed among these distances:
21 13 0.16
22 3 0.04
24 1 0.01
27 2 0.02
29 3 0.04
30 61 0.73
ACGTcount: A:0.25, C:0.03, G:0.48, T:0.24
Consensus pattern (30 bp):
TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
Found at i:3984269 original size:51 final size:51
Alignment explanation
Indices: 3984203--3984305 Score: 161
Period size: 51 Copynumber: 2.0 Consensus size: 51
3984193 GGTGTGGCTA
* *
3984203 GTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTAGTGGAAAAG
1 GTGGAGTTAGAGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTAGTGGAAAAG
* * *
3984254 GTGGAGTTAGAGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGGAGTTAGAGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTAGTGGAAAAG
3984305 G
1 G
3984306 AGTGGCTAGT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.26, C:0.02, G:0.49, T:0.23
Consensus pattern (51 bp):
GTGGAGTTAGAGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTAGTGGAAAAG
Found at i:3984325 original size:51 final size:51
Alignment explanation
Indices: 3984218--3984325 Score: 121
Period size: 51 Copynumber: 2.1 Consensus size: 51
3984208 GTTGGTGGTG
* * *
3984218 GAAAAA-GAGTGGCTAGTGGAGTTGGTAGTGGAAAAGGTGGAGTTAGAGGT
1 GAAAAAGGAGTGGCTAGTGGAGTTGGTAGTGGAAAAGGAGGAGCTAGAGGA
* * * **
3984268 GGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTG-GCTAGTTGA
1 GAAAAAGGAGTGGCTAGTGGAGTTGGTAGTGGAAAAGGAG-GAGCTAGAGGA
3984319 GAAAAAG
1 GAAAAAG
3984326 TTTAAGTTGT
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
50 5 0.11
51 41 0.87
52 1 0.02
ACGTcount: A:0.31, C:0.03, G:0.44, T:0.21
Consensus pattern (51 bp):
GAAAAAGGAGTGGCTAGTGGAGTTGGTAGTGGAAAAGGAGGAGCTAGAGGA
Found at i:3992656 original size:38 final size:38
Alignment explanation
Indices: 3992604--3992679 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
3992594 GTTGCTACAT
*
3992604 AATACAGAGTATTGGGTGGTAAGACATATTCCTAGGGA
1 AATACAGAGCATTGGGTGGTAAGACATATTCCTAGGGA
3992642 AATACAGAGCATTGGGTGGTAAGACATATTCCTAGGGA
1 AATACAGAGCATTGGGTGGTAAGACATATTCCTAGGGA
3992680 GGCTAATTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (38 bp):
AATACAGAGCATTGGGTGGTAAGACATATTCCTAGGGA
Found at i:3994710 original size:16 final size:16
Alignment explanation
Indices: 3994685--3994729 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 16
3994675 AGCATTATCA
* *
3994685 CAGAACAACTCATGTT
1 CAGAATAACTCAAGTT
3994701 CAGAATAACTCTAAGTT
1 CAGAATAACTC-AAGTT
*
3994718 GAGAATAACTCA
1 CAGAATAACTCA
3994730 CATTTGGAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 11 0.44
17 14 0.56
ACGTcount: A:0.42, C:0.20, G:0.13, T:0.24
Consensus pattern (16 bp):
CAGAATAACTCAAGTT
Found at i:3995615 original size:25 final size:26
Alignment explanation
Indices: 3995587--3995637 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
3995577 CTTATTTCAT
*
3995587 TAAATAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAATATTTAAAAACATAA
* *
3995612 TAAATCAAATATATTTAAAAACATAA
1 TAAATAAAAAATATTTAAAAACATAA
3995638 AAACAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (26 bp):
TAAATAAAAAATATTTAAAAACATAA
Found at i:3995629 original size:26 final size:24
Alignment explanation
Indices: 3995599--3995647 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
3995589 AATAAAAAAT
*
3995599 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
3995625 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
3995648 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:3998526 original size:534 final size:534
Alignment explanation
Indices: 3997518--3998585 Score: 2118
Period size: 534 Copynumber: 2.0 Consensus size: 534
3997508 AGCACCCTTG
*
3997518 GTTCCCATCATCCGAGATAACCTGGATTTGAAACAGGCAGATATTGGGAATGCTGGGGTTGCTTC
1 GTTCCCATCATCCGAGATAACCTGGATTTGAAACAAGCAGATATTGGGAATGCTGGGGTTGCTTC
*
3997583 AGTTTCTGGGAGTATATTTTCCAGGCTGGTTATGGGTGCTGTTTGTGACCTAATTGGTGCAAGAT
66 AGTTTCTGGGAGTATACTTTCCAGGCTGGTTATGGGTGCTGTTTGTGACCTAATTGGTGCAAGAT
3997648 ACGGCACTGCCTTTCTCCTATTGTTATCGGCCCCCACCGTTTTCTGCATGTCCTTCGTTGCCGAT
131 ACGGCACTGCCTTTCTCCTATTGTTATCGGCCCCCACCGTTTTCTGCATGTCCTTCGTTGCCGAT
3997713 GCGCAGGGGTACTTGGCAGTCCGGTTCATGATCGGTTTCGCCCTCGCCACGTTCGTGTCGTGTCA
196 GCGCAGGGGTACTTGGCAGTCCGGTTCATGATCGGTTTCGCCCTCGCCACGTTCGTGTCGTGTCA
3997778 GTACTGGACCACCATAATGTTCAATGGGAAGATCATAGGGCTTGTGAATGGGTGTGCTGGTGGAT
261 GTACTGGACCACCATAATGTTCAATGGGAAGATCATAGGGCTTGTGAATGGGTGTGCTGGTGGAT
3997843 GGGGTGACATGGGCGGTGGTGTGACTCAACTGTTGATGCCCTTAGCTTTTCAATTAATCCAGCTA
326 GGGGTGACATGGGCGGTGGTGTGACTCAACTGTTGATGCCCTTAGCTTTTCAATTAATCCAGCTA
3997908 GCTGGTGCAACCCCTTTCACTGCCTGGAGGATTGCCTTTTTCATCCCTGGCTGGTTCCATGTCAT
391 GCTGGTGCAACCCCTTTCACTGCCTGGAGGATTGCCTTTTTCATCCCTGGCTGGTTCCATGTCAT
3997973 TATGGGCATCTTGGTTCTAACCCTTGGCCAAGACTTGCCTGATGGTAACCTTGCTGCCCTTCAAA
456 TATGGGCATCTTGGTTCTAACCCTTGGCCAAGACTTGCCTGATGGTAACCTTGCTGCCCTTCAAA
3998038 AGAGTGGTGAAGTT
521 AGAGTGGTGAAGTT
3998052 GTTCCCATCATCCGAGATAACCTGGATTTGAAACAAGCAGATATTGGGAATGCTGGGGTTGCTTC
1 GTTCCCATCATCCGAGATAACCTGGATTTGAAACAAGCAGATATTGGGAATGCTGGGGTTGCTTC
3998117 AGTTTCTGGGAGTATACTTTCCAGGCTGGTTATGGGTGCTGTTTGTGACCTAATTGGTGCAAGAT
66 AGTTTCTGGGAGTATACTTTCCAGGCTGGTTATGGGTGCTGTTTGTGACCTAATTGGTGCAAGAT
3998182 ACGGCACTGCCTTTCTCCTATTGTTATCGGCCCCCACCGTTTTCTGCATGTCCTTCGTTGCCGAT
131 ACGGCACTGCCTTTCTCCTATTGTTATCGGCCCCCACCGTTTTCTGCATGTCCTTCGTTGCCGAT
3998247 GCGCAGGGGTACTTGGCAGTCCGGTTCATGATCGGTTTCGCCCTCGCCACGTTCGTGTCGTGTCA
196 GCGCAGGGGTACTTGGCAGTCCGGTTCATGATCGGTTTCGCCCTCGCCACGTTCGTGTCGTGTCA
3998312 GTACTGGACCACCATAATGTTCAATGGGAAGATCATAGGGCTTGTGAATGGGTGTGCTGGTGGAT
261 GTACTGGACCACCATAATGTTCAATGGGAAGATCATAGGGCTTGTGAATGGGTGTGCTGGTGGAT
3998377 GGGGTGACATGGGCGGTGGTGTGACTCAACTGTTGATGCCCTTAGCTTTTCAATTAATCCAGCTA
326 GGGGTGACATGGGCGGTGGTGTGACTCAACTGTTGATGCCCTTAGCTTTTCAATTAATCCAGCTA
3998442 GCTGGTGCAACCCCTTTCACTGCCTGGAGGATTGCCTTTTTCATCCCTGGCTGGTTCCATGTCAT
391 GCTGGTGCAACCCCTTTCACTGCCTGGAGGATTGCCTTTTTCATCCCTGGCTGGTTCCATGTCAT
3998507 TATGGGCATCTTGGTTCTAACCCTTGGCCAAGACTTGCCTGATGGTAACCTTGCTGCCCTTCAAA
456 TATGGGCATCTTGGTTCTAACCCTTGGCCAAGACTTGCCTGATGGTAACCTTGCTGCCCTTCAAA
3998572 AGAGTGGTGAAGTT
521 AGAGTGGTGAAGTT
3998586 TCCAAAGACA
Statistics
Matches: 532, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
534 532 1.00
ACGTcount: A:0.18, C:0.23, G:0.27, T:0.31
Consensus pattern (534 bp):
GTTCCCATCATCCGAGATAACCTGGATTTGAAACAAGCAGATATTGGGAATGCTGGGGTTGCTTC
AGTTTCTGGGAGTATACTTTCCAGGCTGGTTATGGGTGCTGTTTGTGACCTAATTGGTGCAAGAT
ACGGCACTGCCTTTCTCCTATTGTTATCGGCCCCCACCGTTTTCTGCATGTCCTTCGTTGCCGAT
GCGCAGGGGTACTTGGCAGTCCGGTTCATGATCGGTTTCGCCCTCGCCACGTTCGTGTCGTGTCA
GTACTGGACCACCATAATGTTCAATGGGAAGATCATAGGGCTTGTGAATGGGTGTGCTGGTGGAT
GGGGTGACATGGGCGGTGGTGTGACTCAACTGTTGATGCCCTTAGCTTTTCAATTAATCCAGCTA
GCTGGTGCAACCCCTTTCACTGCCTGGAGGATTGCCTTTTTCATCCCTGGCTGGTTCCATGTCAT
TATGGGCATCTTGGTTCTAACCCTTGGCCAAGACTTGCCTGATGGTAACCTTGCTGCCCTTCAAA
AGAGTGGTGAAGTT
Found at i:4002704 original size:71 final size:71
Alignment explanation
Indices: 4002583--4002721 Score: 251
Period size: 71 Copynumber: 2.0 Consensus size: 71
4002573 GTTGAGAGGG
* *
4002583 CCAGGCAGAGGGTGGTTGGTGGTTTTGAAATGGTAACAGGTATAACTGATATCTTCCAAATTGAA
1 CCAGGCAGAGGGTGCTTGGTGGTTTTGAAATGATAACAGGTATAACTGATATCTTCCAAATTGAA
4002648 GCTGGA
66 GCTGGA
*
4002654 CCAGGCAGAGGGTGCTTGGTGGTTTTGAAATGATAACAGGTATAATTGATATCTTCCAAATTGAA
1 CCAGGCAGAGGGTGCTTGGTGGTTTTGAAATGATAACAGGTATAACTGATATCTTCCAAATTGAA
4002719 GCT
66 GCT
4002722 TCCTCTTAAC
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 65 1.00
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.29
Consensus pattern (71 bp):
CCAGGCAGAGGGTGCTTGGTGGTTTTGAAATGATAACAGGTATAACTGATATCTTCCAAATTGAA
GCTGGA
Found at i:4003475 original size:16 final size:16
Alignment explanation
Indices: 4003449--4003509 Score: 61
Period size: 16 Copynumber: 3.9 Consensus size: 16
4003439 CCGAATATCC
*
4003449 CAAACTCAAAATAATT
1 CAAACTTAAAATAATT
* *
4003465 TAAATTTAAAAT-ATT
1 CAAACTTAAAATAATT
*
4003480 CAAACTTAAAATAATC
1 CAAACTTAAAATAATT
* *
4003496 CTAACTCAAAATAA
1 CAAACTTAAAATAA
4003510 CTTAAAATTT
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
15 13 0.36
16 23 0.64
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30
Consensus pattern (16 bp):
CAAACTTAAAATAATT
Found at i:4003490 original size:15 final size:15
Alignment explanation
Indices: 4003449--4003492 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
4003439 CCGAATATCC
*
4003449 CAAACTCAAAATAATT
1 CAAACTTAAAAT-ATT
* *
4003465 TAAATTTAAAATATT
1 CAAACTTAAAATATT
4003480 CAAACTTAAAATA
1 CAAACTTAAAATA
4003493 ATCCTAACTC
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
15 14 0.61
16 9 0.39
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (15 bp):
CAAACTTAAAATATT
Found at i:4004955 original size:15 final size:15
Alignment explanation
Indices: 4004914--4004955 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
4004904 TTCTAGACAT
4004914 TATATAAAAAAAATA
1 TATATAAAAAAAATA
* * *
4004929 GATATAATAAAAATC
1 TATATAAAAAAAATA
4004944 TATA-AAAAAAAA
1 TATATAAAAAAAA
4004956 GAATTAAGTG
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
14 7 0.32
15 15 0.68
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (15 bp):
TATATAAAAAAAATA
Found at i:4011682 original size:19 final size:19
Alignment explanation
Indices: 4011658--4011697 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
4011648 GTGATTAAGG
* *
4011658 TTGCTCATACAAGCTGACA
1 TTGCTCACACAAGCTAACA
4011677 TTGCTCACACAAGCTAACA
1 TTGCTCACACAAGCTAACA
4011696 TT
1 TT
4011698 TATGAATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.28
Consensus pattern (19 bp):
TTGCTCACACAAGCTAACA
Found at i:4011718 original size:47 final size:48
Alignment explanation
Indices: 4011630--4011726 Score: 142
Period size: 47 Copynumber: 2.0 Consensus size: 48
4011620 GGAACTATAG
* *
4011630 TGCTCACACAAGCTGACAGTGATTAAGGTTGCTCATACAAGCTGACAT
1 TGCTCACACAAGCTAACAGTGATGAAGGTTGCTCATACAAGCTGACAT
* * *
4011678 TGCTCACACAAGCTAACATTTATGAA-TTTGCTCATACAAGCTGACAT
1 TGCTCACACAAGCTAACAGTGATGAAGGTTGCTCATACAAGCTGACAT
4011725 TG
1 TG
4011727 TATCGAGGTT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
47 22 0.50
48 22 0.50
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.28
Consensus pattern (48 bp):
TGCTCACACAAGCTAACAGTGATGAAGGTTGCTCATACAAGCTGACAT
Found at i:4019094 original size:26 final size:25
Alignment explanation
Indices: 4019065--4019125 Score: 61
Period size: 25 Copynumber: 2.3 Consensus size: 25
4019055 AATATAGTAT
4019065 AAATATATACATATATAATATTAAAA-A
1 AAATATATACATA-AT-ATA-TAAAAGA
* *
4019092 AATGTATATGCATAATATATAAAAGA
1 AA-ATATATACATAATATATAAAAGA
4019118 AAATATAT
1 AAATATAT
4019126 GCATGTAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
25 10 0.34
26 6 0.21
27 4 0.14
28 9 0.31
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (25 bp):
AAATATATACATAATATATAAAAGA
Found at i:4019124 original size:25 final size:24
Alignment explanation
Indices: 4019079--4019129 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
4019069 ATATACATAT
*
4019079 ATAATATTAAAAAAATGTATATGC
1 ATAATATTAAAAAAATATATATGC
4019103 ATAATATATAAAAGAAA-ATATATGC
1 ATAATAT-TAAAA-AAATATATATGC
4019128 AT
1 AT
4019130 GTAAATATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 7 0.29
25 14 0.58
26 3 0.12
ACGTcount: A:0.57, C:0.04, G:0.08, T:0.31
Consensus pattern (24 bp):
ATAATATTAAAAAAATATATATGC
Found at i:4019137 original size:28 final size:26
Alignment explanation
Indices: 4019065--4019139 Score: 66
Period size: 28 Copynumber: 2.8 Consensus size: 26
4019055 AATATAGTAT
*
4019065 AAATATATACATATATAATAT-TAAAAA
1 AAATATATGCAT-TA-AATATATAAAAA
*
4019092 AATGTATATGCA-T-AATATATAAAAGA
1 AA-ATATATGCATTAAATATATAAAA-A
4019118 AAATATATGCATGTAAATATAT
1 AAATATATGCAT-TAAATATAT
4019140 GTACATAAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 11
0.74 0.06 0.21
Matches are distributed among these distances:
24 5 0.13
25 13 0.33
26 4 0.10
27 3 0.08
28 14 0.36
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.33
Consensus pattern (26 bp):
AAATATATGCATTAAATATATAAAAA
Found at i:4019551 original size:27 final size:26
Alignment explanation
Indices: 4019483--4019552 Score: 65
Period size: 27 Copynumber: 2.6 Consensus size: 26
4019473 AAAACCTAAG
4019483 TATAATAATGATATAAAGAAAATAAAA
1 TATAATAATGATA-AAAGAAAATAAAA
*
4019510 TAATAAT-ATGTTAAAA-ATAAATAATAAA
1 T-ATAATAATGATAAAAGA-AAAT-A-AAA
4019538 TATAATAATG-TAAAA
1 TATAATAATGATAAAA
4019553 TAGTAAAAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
25 1 0.03
26 7 0.19
27 17 0.46
28 12 0.32
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (26 bp):
TATAATAATGATAAAAGAAAATAAAA
Found at i:4019650 original size:15 final size:15
Alignment explanation
Indices: 4019628--4019661 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
4019618 TACCAATAAC
*
4019628 AATA-AATAATAGTA
1 AATATAATAATAGAA
4019642 AATATAATAATAGAA
1 AATATAATAATAGAA
4019657 AATAT
1 AATAT
4019662 CAAAATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (15 bp):
AATATAATAATAGAA
Found at i:4021564 original size:67 final size:67
Alignment explanation
Indices: 4021486--4021622 Score: 193
Period size: 67 Copynumber: 2.0 Consensus size: 67
4021476 TTAATTTATA
* * * * *
4021486 AATAAATTAATAAGATAAAAGGATACATATTTTTAGATATAATGTAAGAAATTAAAAAGTTAACT
1 AATAAATTAATAAGACAAAAAGATACATACTTTTAAATATAATGTAAGAAATTAAAAAATTAACT
4021551 TT
66 TT
* * * *
4021553 AATAAATTAATAAGACAAAAAGATAGATACTTTTAAATTTAATTTAAGAAATTAAAAAATTAATT
1 AATAAATTAATAAGACAAAAAGATACATACTTTTAAATATAATGTAAGAAATTAAAAAATTAACT
4021618 TT
66 TT
4021620 AAT
1 AAT
4021623 CTTACATTAA
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
67 61 1.00
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.35
Consensus pattern (67 bp):
AATAAATTAATAAGACAAAAAGATACATACTTTTAAATATAATGTAAGAAATTAAAAAATTAACT
TT
Found at i:4040872 original size:16 final size:17
Alignment explanation
Indices: 4040841--4040873 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
4040831 TTCATAAGTA
4040841 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
4040858 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
4040874 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:4041219 original size:46 final size:46
Alignment explanation
Indices: 4041154--4041523 Score: 510
Period size: 46 Copynumber: 8.0 Consensus size: 46
4041144 TTATCTTTGA
* * * * * * *
4041154 CATGATGCCATAGTGTCTTTCAACTATAGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
** * *
4041200 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* ** ***
4041246 CACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
**
4041292 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
4041338 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
4041384 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
4041430 CATGTTGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
4041476 CA-GTTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATG-TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
4041522 CA
1 CA
4041524 GAGAGCACAC
Statistics
Matches: 300, Mismatches: 22, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
45 5 0.02
46 295 0.98
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:4051308 original size:19 final size:19
Alignment explanation
Indices: 4051284--4051321 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
4051274 TCGCTGAGTT
4051284 TTGAATGTTACAGCTTAAA
1 TTGAATGTTACAGCTTAAA
4051303 TTGAATGTTACAGCTTAAA
1 TTGAATGTTACAGCTTAAA
4051322 CATGGATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (19 bp):
TTGAATGTTACAGCTTAAA
Found at i:4061416 original size:15 final size:14
Alignment explanation
Indices: 4061397--4061423 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
4061387 ACATGTTTTT
4061397 TTTTTTAATATTTA
1 TTTTTTAATATTTA
4061411 TTTTTTAATATTT
1 TTTTTTAATATTT
4061424 TACTATTGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTTTAATATTTA
Found at i:4061425 original size:15 final size:15
Alignment explanation
Indices: 4061392--4061425 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
4061382 TCCACACATG
*
4061392 TTTTTTTTTTTAATA
1 TTTTATTTTTTAATA
4061407 -TTTATTTTTTAATA
1 TTTTATTTTTTAATA
4061421 TTTTA
1 TTTTA
4061426 CTATTGTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTATTTTTTAATA
Found at i:4070949 original size:15 final size:15
Alignment explanation
Indices: 4070929--4070957 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
4070919 TCGCAGCGGC
4070929 AGCAGCCTTCTTCTG
1 AGCAGCCTTCTTCTG
4070944 AGCAGCCTTCTTCT
1 AGCAGCCTTCTTCT
4070958 TGCTCGCGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.34, G:0.17, T:0.34
Consensus pattern (15 bp):
AGCAGCCTTCTTCTG
Found at i:4071458 original size:85 final size:85
Alignment explanation
Indices: 4071312--4071470 Score: 273
Period size: 85 Copynumber: 1.9 Consensus size: 85
4071302 ACGGACTCAA
*
4071312 TTCCAACCAAACGGTATCGTGTTATGTTTATAATTCAACCACGTCTCTTTTATGTTAAACTTTGA
1 TTCCAACCAAACGGTATCGTGTTATGTTTATAATTCAACCACGTCTCTTTTAGGTTAAACTTTGA
*
4071377 TTGAAGGTTGCCTCTCTATC
66 TTAAAGGTTGCCTCTCTATC
* * *
4071397 TTCCAACTAAACGGTGTCGTGTTATGTTTATAATTCAACCACGTCTCTTTTAGGTTTAACTTTGA
1 TTCCAACCAAACGGTATCGTGTTATGTTTATAATTCAACCACGTCTCTTTTAGGTTAAACTTTGA
4071462 TTAAAGGTT
66 TTAAAGGTT
4071471 TTATTCACAT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 69 1.00
ACGTcount: A:0.25, C:0.19, G:0.15, T:0.41
Consensus pattern (85 bp):
TTCCAACCAAACGGTATCGTGTTATGTTTATAATTCAACCACGTCTCTTTTAGGTTAAACTTTGA
TTAAAGGTTGCCTCTCTATC
Found at i:4071976 original size:13 final size:13
Alignment explanation
Indices: 4071958--4071982 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4071948 TTTATAAGTA
4071958 ATTAACATTCAAT
1 ATTAACATTCAAT
4071971 ATTAACATTCAA
1 ATTAACATTCAA
4071983 GCAATACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (13 bp):
ATTAACATTCAAT
Found at i:4078707 original size:26 final size:26
Alignment explanation
Indices: 4078672--4078724 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4078662 TCCCTCATCA
4078672 TCTCTATTTGAAGAAGTTTAAAAAGC
1 TCTCTATTTGAAGAAGTTTAAAAAGC
4078698 TCTCTATTTGAAGAAGTTTAAAAAGC
1 TCTCTATTTGAAGAAGTTTAAAAAGC
4078724 T
1 T
4078725 TAAAAGGGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (26 bp):
TCTCTATTTGAAGAAGTTTAAAAAGC
Found at i:4082701 original size:15 final size:15
Alignment explanation
Indices: 4082681--4082709 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
4082671 TCGCAGCGGC
4082681 AGCAGCCTTCTTCTG
1 AGCAGCCTTCTTCTG
4082696 AGCAGCCTTCTTCT
1 AGCAGCCTTCTTCT
4082710 TGCTCGCGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.34, G:0.17, T:0.34
Consensus pattern (15 bp):
AGCAGCCTTCTTCTG
Found at i:4083301 original size:26 final size:27
Alignment explanation
Indices: 4083239--4083290 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
4083229 GGTCTATAGA
4083239 ATGTGAATGATTAGTTACAAGTAAAAG
1 ATGTGAATGATTAGTTACAAGTAAAAG
*
4083266 ATGTGAATGATTAGTTACAATTAAA
1 ATGTGAATGATTAGTTACAAGTAAA
4083291 GGTGTTCATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.44, C:0.04, G:0.19, T:0.33
Consensus pattern (27 bp):
ATGTGAATGATTAGTTACAAGTAAAAG
Found at i:4083468 original size:12 final size:12
Alignment explanation
Indices: 4083447--4083480 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
4083437 GCTTGGCCCG
*
4083447 TATTAATTTTTA
1 TATTATTTTTTA
4083459 TATTATTTTTTA
1 TATTATTTTTTA
*
4083471 TATGATTTTT
1 TATTATTTTT
4083481 AAATATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (12 bp):
TATTATTTTTTA
Found at i:4089815 original size:25 final size:23
Alignment explanation
Indices: 4089786--4089850 Score: 75
Period size: 19 Copynumber: 2.9 Consensus size: 23
4089776 AATAAAAAAC
*
4089786 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAAT-AAATACA
4089811 TTTAAAACATAAAAATAAATA-A
1 TTTAAAACATAAAAATAAATACA
4089833 --TAAAACA-AAAAATAAATA
1 TTTAAAACATAAAAATAAATA
4089851 AATAATGGGA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 11 0.28
20 7 0.18
22 1 0.03
23 5 0.13
24 4 0.10
25 11 0.28
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (23 bp):
TTTAAAACATAAAAATAAATACA
Found at i:4092194 original size:11 final size:11
Alignment explanation
Indices: 4092178--4092202 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
4092168 CCGCAAAATT
4092178 ATTATTTTAAA
1 ATTATTTTAAA
4092189 ATTATTTTAAA
1 ATTATTTTAAA
4092200 ATT
1 ATT
4092203 TTAATTTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
ATTATTTTAAA
Found at i:4095002 original size:19 final size:19
Alignment explanation
Indices: 4094978--4095014 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
4094968 AATATAATTT
*
4094978 AAATAAAAATTTTAAAAAA
1 AAATAAAAATTGTAAAAAA
*
4094997 AAATAAATATTGTAAAAA
1 AAATAAAAATTGTAAAAA
4095015 TCTTGGTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (19 bp):
AAATAAAAATTGTAAAAAA
Found at i:4098343 original size:18 final size:18
Alignment explanation
Indices: 4098320--4098361 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
4098310 AACATAACCT
* * *
4098320 AAATAATTAAAGTAATCA
1 AAATAATAAAACTAAACA
4098338 AAATAATAAAACTAAACA
1 AAATAATAAAACTAAACA
4098356 AAATAA
1 AAATAA
4098362 ACCAAGAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.69, C:0.07, G:0.02, T:0.21
Consensus pattern (18 bp):
AAATAATAAAACTAAACA
Found at i:4099324 original size:31 final size:31
Alignment explanation
Indices: 4099286--4099352 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
4099276 AGTACCAAAG
*
4099286 TCTTTAAAGGCTACTTCACATTTACTTTTTT
1 TCTTTAAAGGCTACTTCACAATTACTTTTTT
4099317 TCTTTAAAGGCTACTTCACAATTACTTTTTT
1 TCTTTAAAGGCTACTTCACAATTACTTTTTT
4099348 TCTTT
1 TCTTT
4099353 TTAAGGATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.22, C:0.19, G:0.06, T:0.52
Consensus pattern (31 bp):
TCTTTAAAGGCTACTTCACAATTACTTTTTT
Found at i:4100899 original size:23 final size:23
Alignment explanation
Indices: 4100871--4100916 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
4100861 TATCATTTTC
4100871 TTTGGTAAGATGATCAAGCATTT
1 TTTGGTAAGATGATCAAGCATTT
*
4100894 TTTGGTAAGATGGTCAAGCATTT
1 TTTGGTAAGATGATCAAGCATTT
4100917 GATTTTTCGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.39
Consensus pattern (23 bp):
TTTGGTAAGATGATCAAGCATTT
Found at i:4105460 original size:11 final size:11
Alignment explanation
Indices: 4105444--4105469 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
4105434 GAAACTAAAG
4105444 CATGACAGTCT
1 CATGACAGTCT
4105455 CATGACAGTCT
1 CATGACAGTCT
4105466 CATG
1 CATG
4105470 GCAGATCATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (11 bp):
CATGACAGTCT
Found at i:4106270 original size:30 final size:28
Alignment explanation
Indices: 4106207--4106283 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 28
4106197 AATTTATTAT
* *
4106207 AAAAATATAATATGTTTAAAATTTATCTAA
1 AAAAATATAATA-GTTTTAGA-TTATCTAA
* *
4106237 AAAATATATGATGAGTTTTAGATTATTTAA
1 AAAA-ATATAAT-AGTTTTAGATTATCTAA
4106267 AAAAATATAATAGTTTT
1 AAAAATATAATAGTTTT
4106284 GTTCTCTCTA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
28 6 0.15
29 6 0.15
30 15 0.38
31 12 0.30
32 1 0.03
ACGTcount: A:0.49, C:0.01, G:0.08, T:0.42
Consensus pattern (28 bp):
AAAAATATAATAGTTTTAGATTATCTAA
Found at i:4109159 original size:22 final size:22
Alignment explanation
Indices: 4109133--4109176 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
4109123 GCATTTATAC
4109133 AAATACAGGTATAGGTAGATTA
1 AAATACAGGTATAGGTAGATTA
4109155 AAATACAGGTATAGGTAGATTA
1 AAATACAGGTATAGGTAGATTA
4109177 CTATGTATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.05, G:0.23, T:0.27
Consensus pattern (22 bp):
AAATACAGGTATAGGTAGATTA
Found at i:4109340 original size:69 final size:69
Alignment explanation
Indices: 4109229--4109366 Score: 249
Period size: 69 Copynumber: 2.0 Consensus size: 69
4109219 GAATAAATGT
*
4109229 TCCAAACTAAAGGAACGTTATGGTAAAACTTCATTTGAATGATGTGATAGAAAGCAACATGCGAG
1 TCCAAACTAAAGGAACGTTATGGTAAAACTTCATTTGAATGATATGATAGAAAGCAACATGCGAG
4109294 TTGG
66 TTGG
* *
4109298 TCCAAACTAGAGGAACGTTATGGTAAAACTTCATTTGAATGATATGGTAGAAAGCAACATGCGAG
1 TCCAAACTAAAGGAACGTTATGGTAAAACTTCATTTGAATGATATGATAGAAAGCAACATGCGAG
4109363 TTGG
66 TTGG
4109367 ATGGCATGAT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 66 1.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (69 bp):
TCCAAACTAAAGGAACGTTATGGTAAAACTTCATTTGAATGATATGATAGAAAGCAACATGCGAG
TTGG
Found at i:4113168 original size:16 final size:16
Alignment explanation
Indices: 4113135--4113168 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4113125 AGATGACTAT
* *
4113135 ATAAAAAATTTAATAA
1 ATAAAAAATGTAAAAA
4113151 ATAAAAAATGTAAAAA
1 ATAAAAAATGTAAAAA
4113167 AT
1 AT
4113169 TATTAAATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (16 bp):
ATAAAAAATGTAAAAA
Found at i:4118381 original size:26 final size:29
Alignment explanation
Indices: 4118334--4118401 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 29
4118324 AAAGTGTATT
4118334 TTATTTTTTATTTAAAAAT-AA-A-TAAA
1 TTATTTTTTATTTAAAAATAAAGAGTAAA
**
4118360 TTATTTTTTATGTT-AATTTAAAGAGTAAA
1 TTATTTTTTAT-TTAAAAATAAAGAGTAAA
4118389 TTAATTTTTTATT
1 TT-ATTTTTTATT
4118402 AAATAATTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
26 14 0.40
27 4 0.11
28 1 0.03
29 7 0.20
30 9 0.26
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (29 bp):
TTATTTTTTATTTAAAAATAAAGAGTAAA
Found at i:4128148 original size:7 final size:7
Alignment explanation
Indices: 4128136--4128162 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
4128126 AGATTATGTT
4128136 TGTTTTG
1 TGTTTTG
4128143 TGTTTTG
1 TGTTTTG
4128150 TGTTTTG
1 TGTTTTG
4128157 TGTTTT
1 TGTTTT
4128163 ATGAATTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.26, T:0.74
Consensus pattern (7 bp):
TGTTTTG
Found at i:4130885 original size:18 final size:17
Alignment explanation
Indices: 4130852--4130890 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
4130842 TTGTATAAAT
4130852 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
4130870 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
4130887 TGTG
1 TGTG
4130891 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:4131143 original size:23 final size:23
Alignment explanation
Indices: 4131116--4131213 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
4131106 AGTGTTATTG
4131116 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
4131139 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
4131162 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
4131184 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
4131207 ATCAGTG
1 ATCAGTG
4131214 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:4131182 original size:45 final size:45
Alignment explanation
Indices: 4131118--4131206 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
4131108 TGTTATTGAT
* *
4131118 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
4131163 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
4131207 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:4142088 original size:20 final size:21
Alignment explanation
Indices: 4142063--4142102 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
4142053 TTTTTATATT
*
4142063 ACTATTATTGTTA-TATTATC
1 ACTATTATTCTTACTATTATC
*
4142083 ACTATTTTTCTTACTATTAT
1 ACTATTATTCTTACTATTAT
4142103 TATTACTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.57
Consensus pattern (21 bp):
ACTATTATTCTTACTATTATC
Found at i:4142122 original size:3 final size:3
Alignment explanation
Indices: 4141992--4142107 Score: 76
Period size: 3 Copynumber: 38.7 Consensus size: 3
4141982 TTTTTATTTA
* * *
4141992 TAT TAT TAT TAG TAT CAT TAT TAT TAT TAT TAT TAT TAT TAT CTCCCT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -T--AT
* * * * * *
4142040 TAC TAT TAT TAT T-T TTT TA- TAT TAC TAT TAT TGT TA- TAT TAT CAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
4142085 TAT TTT TCT TAC TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TA
4142108 CTACAACTAT
Statistics
Matches: 85, Mismatches: 22, Indels: 12
0.71 0.18 0.10
Matches are distributed among these distances:
2 6 0.07
3 76 0.89
4 1 0.01
5 1 0.01
6 1 0.01
ACGTcount: A:0.28, C:0.09, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:4142288 original size:15 final size:15
Alignment explanation
Indices: 4142270--4142316 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
4142260 ATTAATATCA
4142270 TTATTACTATTATTT
1 TTATTACTATTATTT
4142285 TTATT--T-TTATTT
1 TTATTACTATTATTT
* *
4142297 TTATTACTACTATTG
1 TTATTACTATTATTT
4142312 TTATT
1 TTATT
4142317 TTTATTAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
12 11 0.41
13 1 0.04
14 1 0.04
15 14 0.52
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.68
Consensus pattern (15 bp):
TTATTACTATTATTT
Found at i:4142288 original size:27 final size:27
Alignment explanation
Indices: 4142258--4142316 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
4142248 TTTATTACTA
* *
4142258 TTATTAATATCATTATTACTATTATTT
1 TTATTAATATCATTATTACTACTATTG
** **
4142285 TTATTTTTATTTTTATTACTACTATTG
1 TTATTAATATCATTATTACTACTATTG
4142312 TTATT
1 TTATT
4142317 TTTATTAACA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.64
Consensus pattern (27 bp):
TTATTAATATCATTATTACTACTATTG
Found at i:4142294 original size:21 final size:21
Alignment explanation
Indices: 4142247--4142295 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
4142237 CTTTTCTCTG
4142247 TTTTATTACTATTATTAATAT
1 TTTTATTACTATTATTAATAT
** **
4142268 CATTATTACTATTATTTTTAT
1 TTTTATTACTATTATTAATAT
4142289 TTTTATT
1 TTTTATT
4142296 TTTATTACTA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTATTACTATTATTAATAT
Found at i:4142317 original size:27 final size:27
Alignment explanation
Indices: 4142270--4142322 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
4142260 ATTAATATCA
* *
4142270 TTATTACTATTATTTTTATTTTTATTT
1 TTATTACTACTATTGTTATTTTTATTT
4142297 TTATTACTACTATTGTTATTTTTATT
1 TTATTACTACTATTGTTATTTTTATT
4142323 AACATATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.70
Consensus pattern (27 bp):
TTATTACTACTATTGTTATTTTTATTT
Found at i:4142439 original size:18 final size:18
Alignment explanation
Indices: 4142386--4142451 Score: 73
Period size: 18 Copynumber: 3.6 Consensus size: 18
4142376 TATCAACATA
*
4142386 TACTATTA-T-TATTAAT
1 TACTATTATTATATTTAT
*
4142402 GTACTATTATTTTCTATTTAT
1 -TACTATTA--TTATATTTAT
4142423 TACTATTATTATATTTAT
1 TACTATTATTATATTTAT
4142441 TACTATTATTA
1 TACTATTATTA
4142452 ATATATATTT
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
17 8 0.19
18 20 0.47
20 9 0.21
21 6 0.14
ACGTcount: A:0.32, C:0.08, G:0.02, T:0.59
Consensus pattern (18 bp):
TACTATTATTATATTTAT
Found at i:4142558 original size:15 final size:15
Alignment explanation
Indices: 4142540--4142577 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
4142530 CCCACTTAGC
4142540 TATTATTACTATTAT
1 TATTATTACTATTAT
*
4142555 TATTTTTACTATTAT
1 TATTATTACTATTAT
*
4142570 AATTATTA
1 TATTATTA
4142578 TTAATCTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTATTACTATTAT
Found at i:4159298 original size:21 final size:20
Alignment explanation
Indices: 4159264--4159308 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
4159254 TATACGAGTA
*
4159264 AATTTAACTCAATTTAATAC
1 AATTTAACTCAATTCAATAC
* *
4159284 AATTTATATTCAATTCAATCC
1 AATTTA-ACTCAATTCAATAC
4159305 AATT
1 AATT
4159309 CACATTTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (20 bp):
AATTTAACTCAATTCAATAC
Found at i:4161676 original size:16 final size:17
Alignment explanation
Indices: 4161650--4161682 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
4161640 TAGTAATGAC
4161650 AAAAAAGGTATAATAAT
1 AAAAAAGGTATAATAAT
*
4161667 AAAAAA-GTATGATAAT
1 AAAAAAGGTATAATAAT
4161683 GCTATGATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (17 bp):
AAAAAAGGTATAATAAT
Found at i:4164495 original size:16 final size:15
Alignment explanation
Indices: 4164474--4164521 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
4164464 GATGTGAATA
4164474 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
4164490 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
4164505 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
4164521 A
1 A
4164522 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:4164497 original size:24 final size:24
Alignment explanation
Indices: 4164470--4164525 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
4164460 TAATGATGTG
*
4164470 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
4164494 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
4164518 AATAATAA
1 AATAATAA
4164526 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:4164504 original size:8 final size:8
Alignment explanation
Indices: 4164470--4164521 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
4164460 TAATGATGTG
*
4164470 AATAATAA
1 AATATTAA
4164478 AATATATAA
1 AATAT-TAA
4164487 AATA-TAA
1 AATATTAA
4164494 AATATTAA
1 AATATTAA
*
4164502 AATATCAA
1 AATATTAA
*
4164510 AATATTAG
1 AATATTAA
4164518 AATA
1 AATA
4164522 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:4164736 original size:22 final size:24
Alignment explanation
Indices: 4164673--4164737 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
4164663 CGTGATAATA
*
4164673 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
4164698 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
4164721 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
4164738 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:4164792 original size:25 final size:25
Alignment explanation
Indices: 4164763--4164819 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
4164753 AAATATATAT
* *
4164763 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAAAATAATATAAAAG
* * *
4164788 ATATATACATAAAATAGTATAAAAT
1 ATATATAAATAAAATAATATAAAAG
4164813 ATATATA
1 ATATATA
4164820 TACACGTAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAAAATAATATAAAAG
Found at i:4164818 original size:27 final size:27
Alignment explanation
Indices: 4164750--4164823 Score: 76
Period size: 31 Copynumber: 2.6 Consensus size: 27
4164740 TAACATGTAA
* *
4164750 AAAAAATATATATATATATAAATAATAT
1 AAAAAATATATATACATA-AAATAGTAT
*
4164778 AATATTAAAGATATATACATAAAATAGTAT
1 AA-A--AAATATATATACATAAAATAGTAT
*
4164808 AAAATATATATATACA
1 AAAAAATATATATACA
4164824 CGTAATATAG
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
27 11 0.29
28 2 0.05
29 2 0.05
30 10 0.26
31 13 0.34
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (27 bp):
AAAAAATATATATACATAAAATAGTAT
Found at i:4164896 original size:23 final size:25
Alignment explanation
Indices: 4164853--4164898 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
4164843 TGTACCTAAT
4164853 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
4164878 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
4164899 ACAAAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:4165458 original size:30 final size:30
Alignment explanation
Indices: 4165380--4165515 Score: 177
Period size: 30 Copynumber: 4.5 Consensus size: 30
4165370 TAGGTACAAG
* *
4165380 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
* ** * *
4165410 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
4165440 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
4165470 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
4165500 TGGTGGTGGAAAAGGT
1 TGGTGGTGGAAAAGGT
4165516 TAAGATCCTC
Statistics
Matches: 95, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
29 2 0.02
30 93 0.98
ACGTcount: A:0.21, C:0.04, G:0.48, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:4166103 original size:14 final size:14
Alignment explanation
Indices: 4166084--4166128 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
4166074 TGATTTTTTA
4166084 AAAAGCATAAATTG
1 AAAAGCATAAATTG
4166098 AAAAGCATAAATTG
1 AAAAGCATAAATTG
* *
4166112 AAAA-AAAAAATTG
1 AAAAGCATAAATTG
4166125 AAAA
1 AAAA
4166129 TACCTCAGCG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
13 11 0.38
14 18 0.62
ACGTcount: A:0.67, C:0.04, G:0.11, T:0.18
Consensus pattern (14 bp):
AAAAGCATAAATTG
Found at i:4166246 original size:73 final size:72
Alignment explanation
Indices: 4166119--4166328 Score: 289
Period size: 73 Copynumber: 2.9 Consensus size: 72
4166109 TTGAAAAAAA
* *
4166119 AAATTGAAAATACCTCAGCGTGCGAGCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTG
1 AAATTGAAAATACCTCAGC-TGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTG
*
4166184 ACGAACAG
65 ACAAACAG
* *
4166192 AAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCGATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGC-TGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT
4166257 TGACAAACAG
63 TGACAAACAG
* * *
4166267 AAATTGAAATTACCTCAGC-GTG-TCCTGAGGCTCGACTCACCTCTCGCAATATGAGTTGATTT
1 AAATTGAAAATACCTCAGCTGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
4166329 CTTTGAAGAG
Statistics
Matches: 123, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
71 3 0.02
72 2 0.02
73 90 0.73
75 28 0.23
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (72 bp):
AAATTGAAAATACCTCAGCTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTGA
CAAACAG
Found at i:4166412 original size:89 final size:89
Alignment explanation
Indices: 4166256--4166618 Score: 582
Period size: 89 Copynumber: 4.1 Consensus size: 89
4166246 GAGTTGATTT
* * * *
4166256 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCGACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
4166321 GTTGATTTCTTTGAAGAGCAGAAA
66 GTTGATTTTTTTGAAGAGCAGAAA
*
4166345 TTGAAAAACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
4166410 GTTGATTTTTTTGAAGAGTAGAAA
66 GTTGATTTTTTTGAAGAGCAGAAA
*
4166434 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAAGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
4166499 GTTGATTTTTTTGAAGAGCAGAAA
66 GTTGATTTTTTTGAAGAGCAGAAA
* * * * *
4166523 TTGAAAAACATAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAATTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
4166588 GCTGTTTTTTTTGAAGAGCAGAAA
66 GTTGATTTTTTTGAAGAGCAGAAA
*
4166612 CTGAAAA
1 TTGAAAA
4166619 TACCTCAGCG
Statistics
Matches: 255, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 255 1.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (89 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTGAAGAGCAGAAA
Found at i:4166565 original size:178 final size:169
Alignment explanation
Indices: 4166187--4166759 Score: 749
Period size: 178 Copynumber: 3.4 Consensus size: 169
4166177 TGATTTGACG
* * * *
4166187 AACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCGATATGAGTT
1 AACATAAATTGAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * *
4166251 GA---TTTTTG-A---CAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCGACTCACCT
63 GATTTTTTTTGAATTGAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCT
*
4166309 CTCGCAATATGAGTTGATTTCTTTGAAGAGCAGAAATTGAAA
128 CTCGCAATATGAGTTGATTTTTTTGAAGAGCAGAAATTGAAA
4166351 AACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
4166416 TTTTTTGAAGAGTAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAAGCTCAAC
66 TTTTTT------T-G-AATTG-AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
4166481 TCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAGAAATTGAAA
122 TCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAGAAATTGAAA
* * * * *
4166529 AACATAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAATTCACCTCTCGCAATATGAGCTG-T
1 AACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
4166593 TTTTTTTGAA--G--AGCAGAAACTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTC
66 TTTTTTTGAATTGAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTC
*
4166654 GCAATATGAGTTGATTTTTTTTTGAAAAGCAGAAATTGAAA
131 GCAATATGAGTTGA--TTTTTTTGAAGAGCAGAAATTGAAA
* *
4166695 AGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
4166760 CTTTGGAACA
Statistics
Matches: 363, Mismatches: 26, Indels: 37
0.85 0.06 0.09
Matches are distributed among these distances:
161 2 0.01
162 35 0.10
164 83 0.23
165 4 0.01
166 80 0.22
167 2 0.01
169 2 0.01
170 1 0.00
171 2 0.01
172 1 0.00
174 1 0.00
177 7 0.02
178 143 0.39
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (169 bp):
AACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTTGAATTGAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTTTTGAAGAGCAGAAATTGAAA
Found at i:4166649 original size:75 final size:76
Alignment explanation
Indices: 4166523--4166695 Score: 240
Period size: 75 Copynumber: 2.3 Consensus size: 76
4166513 AGAGCAGAAA
* * * * * * *
4166523 TTGAAAAACATAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAATTCACCTCTCGCAATATGA
1 TTGAAAAGCAGAAACTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
4166588 GCTG-TTTTTT
66 GCTGATTTTTT
*
4166598 TTGAAGAGCAGAAACTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAGCAGAAACTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
4166663 GTTGATTTTTTT
66 GCTGA-TTTTTT
*
4166675 TTGAAAAGCAGAAATTGAAAA
1 TTGAAAAGCAGAAACTGAAAA
4166696 GCAGAAATTG
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
75 60 0.71
77 25 0.29
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (76 bp):
TTGAAAAGCAGAAACTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GCTGATTTTTT
Found at i:4166694 original size:14 final size:14
Alignment explanation
Indices: 4166675--4166709 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
4166665 TGATTTTTTT
4166675 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
4166689 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
4166703 TTGAAAA
1 TTGAAAA
4166710 TACCTCAGCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:4180308 original size:25 final size:25
Alignment explanation
Indices: 4180280--4180344 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
4180270 CGTGATAATA
*
4180280 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAGTG
4180305 TTAAAAATATATACATAATATA--G
1 TTAAAAATATATACATAATATAGTG
*
4180328 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
4180345 GATAACATGT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
22 14 0.37
23 3 0.08
25 21 0.55
ACGTcount: A:0.52, C:0.05, G:0.08, T:0.35
Consensus pattern (25 bp):
TTAAAAATATATACATAATATAGTG
Found at i:4180393 original size:27 final size:26
Alignment explanation
Indices: 4180274--4180446 Score: 88
Period size: 25 Copynumber: 6.6 Consensus size: 26
4180264 TAAATACGTG
* *
4180274 ATAATATTAAAA-ATATGTACATAAT
1 ATAATATTAAAATATATATAAATAAT
* * *
4180299 ATAGTGTTAAAA-ATATATACATAAT
1 ATAATATTAAAATATATATAAATAAT
* * *
4180324 AT-A-GTTAAGATATATACATAAGATAAC
1 ATAATATTAA-A-ATATATATAA-ATAAT
* * **
4180351 ATGTAGAAAAAAATATATATAAATAAT
1 AT-AATATTAAAATATATATAAATAAT
* *
4180378 ATAATATT-AAAGATATATAAATAAA
1 ATAATATTAAAATATATATAAATAAT
* *
4180403 ATAGTA-TAAAATATATATATACGTAAT
1 ATAATATTAAAATATATATA-A-ATAAT
*
4180430 ATAAAATTTAAAATATA
1 ATAATA-TTAAAATATA
4180447 CCTAATATAT
Statistics
Matches: 112, Mismatches: 24, Indels: 20
0.72 0.15 0.13
Matches are distributed among these distances:
23 5 0.04
24 2 0.02
25 55 0.49
26 9 0.08
27 19 0.17
28 9 0.08
29 11 0.10
30 2 0.02
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.34
Consensus pattern (26 bp):
ATAATATTAAAATATATATAAATAAT
Found at i:4180399 original size:25 final size:25
Alignment explanation
Indices: 4180365--4180498 Score: 93
Period size: 25 Copynumber: 5.6 Consensus size: 25
4180355 AGAAAAAAAT
4180365 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
4180390 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
* * *
4180415 ATATATATACGTAATATAAAATTTAA-
1 ATATATA-A-ATAATATAATATTAAAG
** *
4180441 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
4180463 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
4180486 AAATAT-AATAATA
1 ATATATAAATAATA
4180499 ACAAAAAAAG
Statistics
Matches: 84, Mismatches: 19, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
21 3 0.04
22 13 0.15
23 18 0.21
24 5 0.06
25 33 0.39
26 2 0.02
27 10 0.12
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:4181052 original size:30 final size:30
Alignment explanation
Indices: 4180974--4181108 Score: 166
Period size: 30 Copynumber: 4.5 Consensus size: 30
4180964 TAGGTACAAG
* *
4180974 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
* ** * *
4181004 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
4181034 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
*
4181064 TGGTGGTGGAAAAGGTGTGGCCAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
4181094 TGGTGGTGGAAAAGG
1 TGGTGGTGGAAAAGG
4181109 CTAAGATTTA
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
29 2 0.02
30 91 0.98
ACGTcount: A:0.21, C:0.04, G:0.48, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:4181503 original size:33 final size:32
Alignment explanation
Indices: 4181450--4181527 Score: 102
Period size: 33 Copynumber: 2.4 Consensus size: 32
4181440 AGGTAAAAAG
4181450 TTATATTTATATATTTATTTTAACATAAATAA
1 TTATATTTATATATTTATTTTAACATAAATAA
* * * *
4181482 TTATATTTTTATTTTTTATTTTAATATAACTAA
1 TTATATTTATA-TATTTATTTTAACATAAATAA
*
4181515 TTTTATTTATATA
1 TTATATTTATATA
4181528 AAATAATACT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
32 11 0.29
33 27 0.71
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (32 bp):
TTATATTTATATATTTATTTTAACATAAATAA
Found at i:4184052 original size:46 final size:46
Alignment explanation
Indices: 4183982--4184260 Score: 434
Period size: 46 Copynumber: 6.1 Consensus size: 46
4183972 TTCGACATGA
* * * ** * *
4183982 TGCCATAGTATCTTTCAACTATGGTTTTACTAGTTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-ACATTTCATATCAGGT
** * *
4184028 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
4184074 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
4184120 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
4184166 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
4184212 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
4184258 TGC
1 TGC
4184261 ACACTCCCGC
Statistics
Matches: 219, Mismatches: 13, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
45 4 0.02
46 215 0.98
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:4188563 original size:19 final size:18
Alignment explanation
Indices: 4188539--4188587 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
4188529 GAACATGGTT
4188539 TATTTTTGTTTTCTTTAA
1 TATTTTTGTTTTCTTTAA
*
4188557 -ATATTTTGGTTTCTTTAA
1 TAT-TTTTGTTTTCTTTAA
*
4188575 TATGTTTTATTTT
1 TAT-TTTTGTTTT
4188588 TTAAAAAGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 2 0.08
18 14 0.56
19 9 0.36
ACGTcount: A:0.18, C:0.04, G:0.08, T:0.69
Consensus pattern (18 bp):
TATTTTTGTTTTCTTTAA
Found at i:4195258 original size:10 final size:9
Alignment explanation
Indices: 4195238--4195262 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
4195228 GTTTGAGAGC
4195238 TTTTTTGTT
1 TTTTTTGTT
4195247 TTTTTTGTT
1 TTTTTTGTT
4195256 TTTTTTG
1 TTTTTTG
4195263 AAGAAGGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (9 bp):
TTTTTTGTT
Found at i:4195941 original size:14 final size:14
Alignment explanation
Indices: 4195922--4195951 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
4195912 TATTTTTTAT
4195922 TTATTCATTTATTA
1 TTATTCATTTATTA
4195936 TTATTCATTTATTA
1 TTATTCATTTATTA
4195950 TT
1 TT
4195952 CTTTTACTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (14 bp):
TTATTCATTTATTA
Found at i:4200793 original size:3 final size:3
Alignment explanation
Indices: 4200777--4200823 Score: 69
Period size: 3 Copynumber: 16.0 Consensus size: 3
4200767 GTATGTAAGT
* *
4200777 ATA ATA A-A AAA ATA ATA ATA GTA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
4200824 NNNNNNNNNN
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:4203068 original size:86 final size:87
Alignment explanation
Indices: 4202943--4203119 Score: 284
Period size: 86 Copynumber: 2.0 Consensus size: 87
4202933 AAATCTGCCA
* *
4202943 TCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATATTCAACCTGCTCTGCTA
1 TCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATATTCAACCAGCTCTGCTA
4203008 CAAACGAGAGAGGCAAGGTTTG
66 CAAACGAGAGAGGCAAGGTTTG
* * * * *
4203030 TCTTCGATCTGCTTCGCTGTC-AATGCAGGAAGGCAAGATTTGCTATCTTCAACCAGCTCTGCTA
1 TCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATATTCAACCAGCTCTGCTA
4203094 CAAACGAGAGAGGCAAGGTTTG
66 CAAACGAGAGAGGCAAGGTTTG
4203116 TCTT
1 TCTT
4203120 TGATTTTTAC
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
86 64 0.77
87 19 0.23
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (87 bp):
TCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATATTCAACCAGCTCTGCTA
CAAACGAGAGAGGCAAGGTTTG
Found at i:4203110 original size:44 final size:43
Alignment explanation
Indices: 4202974--4203115 Score: 114
Period size: 44 Copynumber: 3.3 Consensus size: 43
4202964 AAATACAGGA
* *
4202974 AGGCAAGATCTGCAATATTCAACCTGCTCTGCTACAAACGAGAG
1 AGGCAAGATTTGC-ATCTTCAACCTGCTCTGCTACAAACGAGAG
* * * * *
4203018 AGGCAAGGTTTG--TCTTCGATCTGCT-TCGCTGTC-AATGCAG-G
1 AGGCAAGATTTGCATCTTCAACCTGCTCT-GCT-ACAAACG-AGAG
*
4203059 AAGGCAAGATTTGCTATCTTCAACCAGCTCTGCTACAAACGAGAG
1 -AGGCAAGATTTGC-ATCTTCAACCTGCTCTGCTACAAACGAGAG
*
4203104 AGGCAAGGTTTG
1 AGGCAAGATTTG
4203116 TCTTTGATTT
Statistics
Matches: 74, Mismatches: 14, Indels: 20
0.69 0.13 0.19
Matches are distributed among these distances:
40 1 0.01
41 17 0.23
42 14 0.19
44 24 0.32
45 17 0.23
46 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (43 bp):
AGGCAAGATTTGCATCTTCAACCTGCTCTGCTACAAACGAGAG
Found at i:4210075 original size:19 final size:20
Alignment explanation
Indices: 4210051--4210094 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
4210041 CGTGAAAGTC
* *
4210051 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
4210070 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
4210090 -AATGC
1 TAATGC
4210095 CAAAAGAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.27
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:4222332 original size:10 final size:10
Alignment explanation
Indices: 4222317--4222341 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
4222307 NNNNNNNNAA
4222317 TTTTTTTTGC
1 TTTTTTTTGC
4222327 TTTTTTTTGC
1 TTTTTTTTGC
4222337 TTTTT
1 TTTTT
4222342 ATATTTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.84
Consensus pattern (10 bp):
TTTTTTTTGC
Found at i:4222367 original size:12 final size:11
Alignment explanation
Indices: 4222340--4222370 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
4222330 TTTTTGCTTT
4222340 TTATATTTTTA
1 TTATATTTTTA
4222351 TTATATTTTTA
1 TTATATTTTTA
4222362 TGTATATTT
1 T-TATATTT
4222371 GCAATAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (11 bp):
TTATATTTTTA
Found at i:4224140 original size:18 final size:18
Alignment explanation
Indices: 4224117--4224179 Score: 72
Period size: 18 Copynumber: 3.5 Consensus size: 18
4224107 TACTAATATC
4224117 ATTCAGTAACAATCAATT
1 ATTCAGTAACAATCAATT
* *
4224135 ATTCAGTAGCAATCAGTT
1 ATTCAGTAACAATCAATT
* * *
4224153 GTTCAGTAATAATTAATT
1 ATTCAGTAACAATCAATT
*
4224171 ATTTAGTAA
1 ATTCAGTAA
4224180 TAGTCAGTGA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (18 bp):
ATTCAGTAACAATCAATT
Found at i:4224274 original size:32 final size:32
Alignment explanation
Indices: 4224233--4224294 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
4224223 TCGGATATTG
4224233 ACGGATACACGGATCCAACCAACACACCAGTA
1 ACGGATACACGGATCCAACCAACACACCAGTA
4224265 ACGGATACACGGATCCAACCAACACACCAG
1 ACGGATACACGGATCCAACCAACACACCAG
4224295 CACGGCACCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.40, C:0.35, G:0.16, T:0.08
Consensus pattern (32 bp):
ACGGATACACGGATCCAACCAACACACCAGTA
Found at i:4225182 original size:19 final size:19
Alignment explanation
Indices: 4225141--4225185 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
4225131 TATGTTTCTA
* * *
4225141 TTTATCTCTTTTTCTATCT
1 TTTATTTCTTTTTATATCC
*
4225160 TTTATTTCTTTTTATTTCC
1 TTTATTTCTTTTTATATCC
4225179 TTTATTT
1 TTTATTT
4225186 AATTAGTTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTATTTCTTTTTATATCC
Found at i:4225354 original size:13 final size:14
Alignment explanation
Indices: 4225336--4225368 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
4225326 TTGGTTTATT
4225336 TATAATATAA-TAA
1 TATAATATAATTAA
4225349 TATAATATAATTAA
1 TATAATATAATTAA
4225363 TATAAT
1 TATAAT
4225369 TTACAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
TATAATATAATTAA
Found at i:4225371 original size:34 final size:38
Alignment explanation
Indices: 4225332--4225416 Score: 92
Period size: 34 Copynumber: 2.3 Consensus size: 38
4225322 CTTTTTGGTT
4225332 TATTTATAATATAATAATATA-ATATAATT-AAT-ATA
1 TATTTATAATATAATAATATACATATAATTAAATAATA
* *
4225367 -ATTTA-CA-ATAATAATATACTTTATAATTAAATAATA
1 TATTTATAATATAATAATATAC-ATATAATTAAATAATA
4225403 TATTTATATATATA
1 TATTTATA-ATATA
4225417 TTAAAAACAT
Statistics
Matches: 39, Mismatches: 3, Indels: 11
0.74 0.06 0.21
Matches are distributed among these distances:
32 11 0.28
33 1 0.03
34 12 0.31
35 3 0.08
36 3 0.08
37 5 0.13
39 1 0.03
40 3 0.08
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (38 bp):
TATTTATAATATAATAATATACATATAATTAAATAATA
Found at i:4225380 original size:22 final size:22
Alignment explanation
Indices: 4225338--4225381 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
4225328 GGTTTATTTA
*
4225338 TAATATAATAATATAATATAAT
1 TAATATAATAATACAATATAAT
*
4225360 TAATATAAT-TTACAATAATAAT
1 TAATATAATAATACAAT-ATAAT
4225382 ATACTTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (22 bp):
TAATATAATAATACAATATAAT
Found at i:4225383 original size:18 final size:18
Alignment explanation
Indices: 4225355--4225408 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
4225345 ATAATATAAT
4225355 ATAATTAATATAATTTACA
1 ATAA-TAATATAATTTACA
* *
4225374 ATAATAATATACTTTATA
1 ATAATAATATAATTTACA
4225392 ATTAAATAATAT-ATTTA
1 A-T-AATAATATAATTTA
4225409 TATATATATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 13 0.43
19 9 0.30
20 8 0.27
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (18 bp):
ATAATAATATAATTTACA
Found at i:4234363 original size:23 final size:23
Alignment explanation
Indices: 4234333--4234378 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
4234323 TTATGTAATG
4234333 ATGTCTATAGTACTGTTTGCTTT
1 ATGTCTATAGTACTGTTTGCTTT
4234356 ATGTCTATAGTACTGTTTGCTTT
1 ATGTCTATAGTACTGTTTGCTTT
4234379 TTGTAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.13, G:0.17, T:0.52
Consensus pattern (23 bp):
ATGTCTATAGTACTGTTTGCTTT
Done.