Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 126 of 167
Found at i:42183673 original size:17 final size:17
Alignment explanation
Indices: 42183651--42183687 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
42183641 ACACTGGTGC
42183651 GTCTTTTGGCTGTGTGA
1 GTCTTTTGGCTGTGTGA
42183668 GTCTTTTGGCTGTGTGA
1 GTCTTTTGGCTGTGTGA
42183685 GTC
1 GTC
42183688 ACACGACTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.05, C:0.14, G:0.35, T:0.46
Consensus pattern (17 bp):
GTCTTTTGGCTGTGTGA
Found at i:42189759 original size:46 final size:45
Alignment explanation
Indices: 42189577--42189797 Score: 189
Period size: 46 Copynumber: 4.7 Consensus size: 45
42189567 ATTCGTGTGT
* *
42189577 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-ATATTGTGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCGAGA-TGT-A
* *
42189623 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGATG-A
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC--CGAGATGTA
* * *
42189671 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC-GGC-CGAGATGTA
* *
42189718 -AGCCAGTGTAAGACATGTCTGGAATATGCATCGGCTACGAGATG-A
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC--CGAGATGTA
* ** *
42189763 TAGTTAGTGTAAGACCAGGTCTGGGACATGGCATC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
42189798 AACTTGAGAT
Statistics
Matches: 144, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
45 3 0.02
46 70 0.49
47 40 0.28
48 27 0.19
50 2 0.01
51 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.24
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCGAGATGTA
Found at i:42189807 original size:47 final size:47
Alignment explanation
Indices: 42189582--42189846 Score: 172
Period size: 47 Copynumber: 5.7 Consensus size: 47
42189572 TGTGTGAGCT
** *
42189582 AGTGTAAGACATGTCTGGGACAT-GCATCGGC-C-ATATTG-TGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCAACTCGAGA-TGAT-A-AGCC
* ** * * *
42189628 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGATGA-GAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCAAC-TCGAGATGATAAGCC
* *
42189676 AGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCGAGACG-TAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCA-ACTCGAGATGATAAGCC
* * ** **
42189722 AGTGTAAGACATGTCTGGAATAT-GCATCGGCTACGAGATGAT-AGTT
1 AGTGTAAGACATGTCTGGGACATGGCATCAACT-CGAGATGATAAGCC
* * *
42189768 AGTGTAAGACCAGGTCTGGGACATGGCATCAACTTGAGAT-ATGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCAACTCGAGATGATAAGCC
* * *
42189815 AGAGTAAGACTGTGTCTAGGACATGGCATCAA
1 AGTGTAAGAC-ATGTCTGGGACATGGCATCAA
42189847 TGTCTTACCC
Statistics
Matches: 174, Mismatches: 31, Indels: 27
0.75 0.13 0.12
Matches are distributed among these distances:
45 2 0.01
46 69 0.40
47 72 0.41
48 27 0.16
50 2 0.01
51 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCATCAACTCGAGATGATAAGCC
Found at i:42189822 original size:93 final size:93
Alignment explanation
Indices: 42189577--42189844 Score: 240
Period size: 94 Copynumber: 2.9 Consensus size: 93
42189567 ATTCGTGTGT
* * * *** **
42189577 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATTGTGA-GAGCCAGTGTAAGACCAT
1 GAGCTAGTGTAAGACAGGTCTGGGACATGCATCAGAC-TCGAGACATGAGCCAGTGTAAGA-CAT
* * *
42189641 GTTTGGGACATGGCATCGGCATTGAGATGA
64 GTCTGGAACATGGCATCGGCATCGAGATGA
* * * *
42189671 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGTAAGCCAGTGTAAGACATGT
1 GAGCTAGTGTAAGACAGGTCTGGGACATGCATCAGACTCGAGACATGAGCCAGTGTAAGACATGT
*
42189736 CTGGAATAT-GCATCGGC-TACGAGATGA
66 CTGGAACATGGCATCGGCAT-CGAGATGA
* * * * * *
42189763 TAGTTAGTGTAAGACCAGGTCTGGGACATGGCATCA-ACTTGAGATATGAGCCAGAGTAAGACTG
1 GAGCTAGTGTAAGA-CAGGTCTGGGACAT-GCATCAGACTCGAGACATGAGCCAGTGTAAGAC-A
42189827 TGTCTAGG-ACATGGCATC
63 TGTCT-GGAACATGGCATC
42189845 AATGTCTTAC
Statistics
Matches: 144, Mismatches: 23, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
91 1 0.01
92 27 0.19
93 46 0.32
94 63 0.44
95 7 0.05
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (93 bp):
GAGCTAGTGTAAGACAGGTCTGGGACATGCATCAGACTCGAGACATGAGCCAGTGTAAGACATGT
CTGGAACATGGCATCGGCATCGAGATGA
Found at i:42195800 original size:31 final size:31
Alignment explanation
Indices: 42195753--42195838 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
42195743 TCAATCTCAG
42195753 CATAT-ACTGGGTCGAAGCCTTTACATTATT
1 CATATCACTGGGTCGAAGCCTTTACATTATT
* * *
42195783 CATATCATTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGTCGAAGCCTTTACATTATT
42195814 CATATCACTGGGTCGAAGCCTTTAC
1 CATATCACTGGGTCGAAGCCTTTAC
42195839 TGTAATAATA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
30 5 0.10
31 44 0.90
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.35
Consensus pattern (31 bp):
CATATCACTGGGTCGAAGCCTTTACATTATT
Found at i:42196071 original size:25 final size:25
Alignment explanation
Indices: 42196043--42196151 Score: 91
Period size: 25 Copynumber: 4.4 Consensus size: 25
42196033 CTGGAGGCCT
42196043 AGCCTCTTTTAAT-AACTGGGGCAAA
1 AGCC-CTTTTAATAAACTGGGGCAAA
**
42196068 AGCCCTTTTTGTTAAACTGGGGCAAA
1 AGCCC-TTTTAATAAACTGGGGCAAA
** *
42196094 AGCCCTTTTCGGTAAACTAGGGC-AA
1 AGCCCTTTT-AATAAACTGGGGCAAA
**
42196119 AGCCCTTTTCGGT-AACTGGGGC-AA
1 AGCCCTTTT-AATAAACTGGGGCAAA
42196143 AGCCCTTTT
1 AGCCCTTTT
42196152 CGGTAACTGG
Statistics
Matches: 76, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
24 20 0.26
25 28 0.37
26 28 0.37
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTGGGGCAAA
Found at i:42196140 original size:24 final size:24
Alignment explanation
Indices: 42196055--42196175 Score: 161
Period size: 24 Copynumber: 4.9 Consensus size: 24
42196045 CCTCTTTTAA
* *
42196055 TAACTGGGGCAAAAGCCCTTTTTGT
1 TAACTGGGGC-AAAGCCCTTTTCGG
42196080 TAAACTGGGGCAAAAGCCCTTTTCGG
1 T-AACTGGGGC-AAAGCCCTTTTCGG
*
42196106 TAAACTAGGGCAAAGCCCTTTTCGG
1 T-AACTGGGGCAAAGCCCTTTTCGG
42196131 TAACTGGGGCAAAGCCCTTTTCGG
1 TAACTGGGGCAAAGCCCTTTTCGG
**
42196155 TAACTGGGGCGTAGCCCTTTT
1 TAACTGGGGCAAAGCCCTTTT
42196176 GCACTTCCTC
Statistics
Matches: 89, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
24 41 0.46
25 16 0.18
26 32 0.36
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (24 bp):
TAACTGGGGCAAAGCCCTTTTCGG
Found at i:42201920 original size:45 final size:45
Alignment explanation
Indices: 42201740--42201959 Score: 153
Period size: 46 Copynumber: 4.7 Consensus size: 45
42201730 ATTCGTGTGT
* * * *
42201740 GAGCTAGTGTAAGACATGTCGGGACATGCATCGGCCAC-ATTATGA
1 GAGCTAGTGTAAGACATGTCTGGACATGCATCGGCTACGA-GACGA
* * *
42201785 GAGCCAGTGTAAGACCATGTCTGAGATATGGCATCGGC-ATTGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTG-GACAT-GCATCGGCTA-CGAGACGA
* * ***
42201833 GGGCTAGTGTAAGACATCTCTAGGACATGCATTATCCT-CGAGACGTA
1 GAGCTAGTGTAAGACATGTCT-GGACATGCA-TCGGCTACGAGACG-A
* *
42201880 -AGCTTGTGTAAGACATGTCTGGACATGCATCGGCTACGAGATGA
1 GAGCTAGTGTAAGACATGTCTGGACATGCATCGGCTACGAGACGA
* *
42201924 TAG-TCAGTGTAAGACCAGGTCTGGGACATGGCATCG
1 GAGCT-AGTGTAAGA-CATGTCT-GGACAT-GCATCG
42201960 ACTTGAGATA
Statistics
Matches: 137, Mismatches: 23, Indels: 27
0.73 0.12 0.14
Matches are distributed among these distances:
44 5 0.04
45 38 0.28
46 39 0.28
47 24 0.18
48 30 0.22
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGACATGCATCGGCTACGAGACGA
Found at i:42201968 original size:47 final size:47
Alignment explanation
Indices: 42201885--42202006 Score: 137
Period size: 47 Copynumber: 2.6 Consensus size: 47
42201875 ACGTAAGCTT
* *
42201885 GTGTAAGA-CATGTCTGGACAT-GCATCGGCTACGAGATGAT-AGTCA
1 GTGTAAGACCAGGTCTGGACATGGCATCGACTACGAGAT-ATGAGTCA
*
42201930 GTGTAAGACCAGGTCTGGGACATGGCATCGACT-TGAGATATGAGTCA
1 GTGTAAGACCAGGTCT-GGACATGGCATCGACTACGAGATATGAGTCA
*
42201977 ATGTAAGACC-GTGTCTAGGACATGGCATCG
1 GTGTAAGACCAG-GTCT-GGACATGGCATCG
42202007 GCGTCTTACC
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
45 8 0.12
46 9 0.13
47 42 0.63
48 8 0.12
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
GTGTAAGACCAGGTCTGGACATGGCATCGACTACGAGATATGAGTCA
Found at i:42203648 original size:40 final size:39
Alignment explanation
Indices: 42203593--42203701 Score: 182
Period size: 40 Copynumber: 2.7 Consensus size: 39
42203583 GGATTTAACT
*
42203593 GGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCC
1 GGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCC
42203633 GGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGCCC
42203673 GGATATAGTAACTCGCACAAATGCCTTCG
1 GGATATAGT-ACTCGCACAAATGCCTTCG
42203702 TTATCATCCG
Statistics
Matches: 66, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
39 2 0.03
40 63 0.95
41 1 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
GGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:42206614 original size:21 final size:22
Alignment explanation
Indices: 42206575--42206615 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
42206565 TTGGAATGCT
42206575 CACACGGGCGTGTTGCCCCTCC
1 CACACGGGCGTGTTGCCCCTCC
*
42206597 CACACGGGTGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
42206616 GTGTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTCC
Found at i:42213344 original size:42 final size:42
Alignment explanation
Indices: 42213167--42213363 Score: 173
Period size: 42 Copynumber: 4.7 Consensus size: 42
42213157 TTGTGTTTAC
* * * * * ** * *
42213167 TTTCCGTTTAGCCCTCACGAGCTTCTGTTTAATTCATATGAG
1 TTTCTGTTTAGCTCTTATGAGCTTCCGTTTAACCCTTATGGG
* *
42213209 TTTTTGTTTAGCTC-TATTGAGCTTCTGTTTAA-CCTTGATGGG
1 TTTCTGTTTAGCTCTTA-TGAGCTTCCGTTTAACCCTT-ATGGG
* * * **
42213251 TTTCTGTTCAACTCTTACGAGCTTCTATTTAACCCTTATGGG
1 TTTCTGTTTAGCTCTTATGAGCTTCCGTTTAACCCTTATGGG
* * *
42213293 TTTCCGTTTAGCTCTTATGAGCTTCCGCTCAACCCTTATGGG
1 TTTCTGTTTAGCTCTTATGAGCTTCCGTTTAACCCTTATGGG
* *
42213335 TTTCTGTTTAGCACTTATGTGCTTCCGTT
1 TTTCTGTTTAGCTCTTATGAGCTTCCGTT
42213364 CAGCCTTCGG
Statistics
Matches: 126, Mismatches: 25, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
41 3 0.02
42 117 0.93
43 6 0.05
ACGTcount: A:0.16, C:0.22, G:0.18, T:0.44
Consensus pattern (42 bp):
TTTCTGTTTAGCTCTTATGAGCTTCCGTTTAACCCTTATGGG
Found at i:42213351 original size:21 final size:21
Alignment explanation
Indices: 42213231--42213353 Score: 86
Period size: 21 Copynumber: 5.9 Consensus size: 21
42213221 TCTATTGAGC
42213231 TTCTGTTTAA-CCTTGATGGGT
1 TTCTGTTTAACCCTT-ATGGGT
* * * * *
42213252 TTCTGTTCAACTCTTACGAGC
1 TTCTGTTTAACCCTTATGGGT
*
42213273 TTCTATTTAACCCTTATGGGT
1 TTCTGTTTAACCCTTATGGGT
* * * * *
42213294 TTCCGTTTAGCTCTTATGAGC
1 TTCTGTTTAACCCTTATGGGT
* * *
42213315 TTCCGCTCAACCCTTATGGGT
1 TTCTGTTTAACCCTTATGGGT
* *
42213336 TTCTGTTTAGCACTTATG
1 TTCTGTTTAACCCTTATG
42213354 TGCTTCCGTT
Statistics
Matches: 73, Mismatches: 28, Indels: 2
0.71 0.27 0.02
Matches are distributed among these distances:
21 70 0.96
22 3 0.04
ACGTcount: A:0.16, C:0.23, G:0.18, T:0.43
Consensus pattern (21 bp):
TTCTGTTTAACCCTTATGGGT
Found at i:42213886 original size:13 final size:13
Alignment explanation
Indices: 42213868--42213892 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
42213858 CCAAGCACAC
42213868 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
42213881 GCCCGTGTCCCT
1 GCCCGTGTCCCT
42213893 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:42235040 original size:15 final size:15
Alignment explanation
Indices: 42235018--42235055 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
42235008 TATATTAGAT
42235018 TTTC-TTATCATGGA
1 TTTCTTTATCATGGA
*
42235032 TTTCTTTATCTTGGA
1 TTTCTTTATCATGGA
42235047 TTTCTTTAT
1 TTTCTTTAT
42235056 TCTGGGCTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 4 0.18
15 18 0.82
ACGTcount: A:0.16, C:0.13, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATCATGGA
Found at i:42236492 original size:13 final size:13
Alignment explanation
Indices: 42236455--42236492 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
42236445 AAATGATTTA
*
42236455 TTGAAAATTTCAT
1 TTGAAAATTTCGT
42236468 TTGAAAATTTCGT
1 TTGAAAATTTCGT
42236481 TTGAAAATTTCG
1 TTGAAAATTTCG
42236493 ACGTTTGGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.08, G:0.13, T:0.45
Consensus pattern (13 bp):
TTGAAAATTTCGT
Found at i:42238019 original size:29 final size:29
Alignment explanation
Indices: 42237970--42238028 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
42237960 ACGGGGGATG
* *
42237970 TATCCTGGACTGGTAATCCCGCCGTAAGA
1 TATCCTGGACTCGTAACCCCGCCGTAAGA
*
42237999 TATCCTGGACTCGTCACCCCGCCGTAAGA
1 TATCCTGGACTCGTAACCCCGCCGTAAGA
42238028 T
1 T
42238029 GTGAGGTTCG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (29 bp):
TATCCTGGACTCGTAACCCCGCCGTAAGA
Found at i:42240549 original size:46 final size:46
Alignment explanation
Indices: 42240444--42240593 Score: 182
Period size: 47 Copynumber: 3.3 Consensus size: 46
42240434 GTGCCGTTGC
* * *
42240444 CATGTCCCAGACATGGTCTTACACTGAC--ACATTTCATGGCTGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATTTGA-GGCCGATG
42240489 CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTTGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACAT-TTGAGGCCGATG
* * *
42240535 CATGTCCCAAACATGGTCTTACACTGGCTCT-CATAATGTGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCT-TACAT-TTGAGGCCGATG
42240582 CATGTCCCAGAC
1 CATGTCCCAGAC
42240594 TGCCTTACAC
Statistics
Matches: 92, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
44 12 0.13
45 14 0.15
46 24 0.26
47 41 0.45
48 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACATTTGAGGCCGATG
Found at i:42249938 original size:21 final size:21
Alignment explanation
Indices: 42249908--42250092 Score: 78
Period size: 21 Copynumber: 8.6 Consensus size: 21
42249898 TCTTTTCTTC
42249908 TTTG-AATTGATTATTTGTTG
1 TTTGAAATTGATTATTTGTTG
* * *
42249928 TTTGAAATTGATTCTTTACTTA
1 TTTGAAATTGATTATTT-GTTG
*
42249950 TTTG-AATCGATTCATTATTGTTG
1 TTTGAAATTGATT-A-T-TTGTTG
* *
42249973 CTTT-AAATCGATTATTTGCTTC
1 -TTTGAAATTGATTATTTG-TTG
42249995 TTT-AAATTGATTCATGATTGTTG
1 TTTGAAATTGATT-AT--TTGTTG
* * * *
42250018 TTTTAAATTGATTCTTTACTTC
1 TTTGAAATTGATTATTT-GTTG
** *
42250040 TTTG-AATCAATTGTTTGTTG
1 TTTGAAATTGATTATTTGTTG
* * *
42250060 TTTTAAATCGATTCA-TTATTG
1 TTTGAAATTGATT-ATTTGTTG
42250081 TTTG-AATTGATT
1 TTTGAAATTGATT
42250093 CTTTATTTTT
Statistics
Matches: 125, Mismatches: 25, Indels: 30
0.69 0.14 0.17
Matches are distributed among these distances:
20 16 0.13
21 58 0.46
22 16 0.13
23 10 0.08
24 25 0.20
ACGTcount: A:0.24, C:0.08, G:0.14, T:0.55
Consensus pattern (21 bp):
TTTGAAATTGATTATTTGTTG
Found at i:42249942 original size:42 final size:43
Alignment explanation
Indices: 42249878--42250113 Score: 223
Period size: 45 Copynumber: 5.5 Consensus size: 43
42249868 TTGTTACTAA
* *
42249878 ATTTGTTATTTTAAATCT-ATTCTTTTCTTCTTTGAATTGATT-
1 ATTTGTTGTTTTAAAT-TGATTCTTTACTTCTTTGAATTGATTC
* * *
42249920 ATTTGTTGTTTGAAATTGATTCTTTACTTATTTGAATCGATTC
1 ATTTGTTGTTTTAAATTGATTCTTTACTTCTTTGAATTGATTC
* * * * *
42249963 ATTATTGTTGCTTTAAATCGATTATTTGCTTCTTTAAATTGATTC
1 A-T-TTGTTGTTTTAAATTGATTCTTTACTTCTTTGAATTGATTC
**
42250008 ATGATTGTTGTTTTAAATTGATTCTTTACTTCTTTGAATCAATT-
1 AT--TTGTTGTTTTAAATTGATTCTTTACTTCTTTGAATTGATTC
* * * *
42250052 GTTTGTTGTTTTAAATCGATTCATTA-TTGTTTGAATTGATTC
1 ATTTGTTGTTTTAAATTGATTCTTTACTTCTTTGAATTGATTC
* *
42250094 -TTTATT-TTTTAACTTGATTC
1 ATTTGTTGTTTTAAATTGATTC
42250114 AAAATCCAAC
Statistics
Matches: 159, Mismatches: 29, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
40 12 0.08
41 18 0.11
42 57 0.36
43 1 0.01
44 3 0.02
45 68 0.43
ACGTcount: A:0.23, C:0.09, G:0.11, T:0.56
Consensus pattern (43 bp):
ATTTGTTGTTTTAAATTGATTCTTTACTTCTTTGAATTGATTC
Found at i:42250058 original size:87 final size:86
Alignment explanation
Indices: 42249887--42250072 Score: 241
Period size: 87 Copynumber: 2.1 Consensus size: 86
42249877 AATTTGTTAT
* * * *
42249887 TTTAAATCTATTCTTTTCTTCTTTGAATTGATTATTTGTTGTTTGAAATTGATTCTTTACTTATT
1 TTTAAATCGATTATTTGCTTCTTTAAATTGATTATTTGTTGTTTGAAATTGATTCTTTACTTATT
* *
42249952 TGAATCGATTCATTATTGTTGC
66 TGAATCAATT-AGTATTGTTGC
*
42249974 TTTAAATCGATTATTTGCTTCTTTAAATTGATTCATGATTGTTGTTTTAAATTGATTCTTTACTT
1 TTTAAATCGATTATTTGCTTCTTTAAATTGATT-AT--TTGTTGTTTGAAATTGATTCTTTACTT
* *
42250039 CTTTGAATCAATT-GT-TTGTTGT
63 ATTTGAATCAATTAGTATTGTTGC
42250061 TTTAAATCGATT
1 TTTAAATCGATT
42250073 CATTATTGTT
Statistics
Matches: 87, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
87 47 0.54
88 3 0.03
90 37 0.43
ACGTcount: A:0.23, C:0.10, G:0.12, T:0.55
Consensus pattern (86 bp):
TTTAAATCGATTATTTGCTTCTTTAAATTGATTATTTGTTGTTTGAAATTGATTCTTTACTTATT
TGAATCAATTAGTATTGTTGC
Found at i:42250964 original size:16 final size:16
Alignment explanation
Indices: 42250942--42250973 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
42250932 GCTTGTTTGG
42250942 ATTTTTTT-TATTTTT
1 ATTTTTTTGTATTTTT
42250957 ATTTTTTTGTATTTTT
1 ATTTTTTTGTATTTTT
42250973 A
1 A
42250974 GGTTTAATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (16 bp):
ATTTTTTTGTATTTTT
Found at i:42275541 original size:3 final size:3
Alignment explanation
Indices: 42275535--42275560 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
42275525 AACTGAAAAA
42275535 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
42275561 AAAACACTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:42278625 original size:33 final size:33
Alignment explanation
Indices: 42278569--42278719 Score: 158
Period size: 33 Copynumber: 4.5 Consensus size: 33
42278559 ACATCATCAG
*
42278569 TCCAACCAAACACACCAAATGCTCACACGAGCCAA
1 TCCAACC-AACACACC-AATGCTCACAAGAGCCAA
** * * *
42278604 TCCCTCCAATACACCAATGCTCATAAGAGCTAA
1 TCCAACCAACACACCAATGCTCACAAGAGCCAA
* * *
42278637 TCCAACCAGCACACCAATGCTCATAAGAGCTAA
1 TCCAACCAACACACCAATGCTCACAAGAGCCAA
* * * * *
42278670 TCCAACTAGCACACTAATGCTCATAAGAGCTAA
1 TCCAACCAACACACCAATGCTCACAAGAGCCAA
42278703 TCCAACCAACACACCAA
1 TCCAACCAACACACCAA
42278720 ACAGAGAGTA
Statistics
Matches: 101, Mismatches: 15, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
33 89 0.88
34 7 0.07
35 5 0.05
ACGTcount: A:0.40, C:0.35, G:0.09, T:0.15
Consensus pattern (33 bp):
TCCAACCAACACACCAATGCTCACAAGAGCCAA
Found at i:42289677 original size:39 final size:39
Alignment explanation
Indices: 42289623--42289697 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
42289613 AAATAGCCTA
*
42289623 TTTTTGTCCACACGGGTAGACACACGGGTGTGTGTCCTG
1 TTTTTGTACACACGGGTAGACACACGGGTGTGTGTCCTG
*
42289662 TTTTTGTACACACGGGTAGAGACACGGGTGTGTGTC
1 TTTTTGTACACACGGGTAGACACACGGGTGTGTGTC
42289698 TCAGCCGTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.17, C:0.20, G:0.32, T:0.31
Consensus pattern (39 bp):
TTTTTGTACACACGGGTAGACACACGGGTGTGTGTCCTG
Found at i:42289709 original size:39 final size:39
Alignment explanation
Indices: 42289631--42289709 Score: 97
Period size: 39 Copynumber: 2.0 Consensus size: 39
42289621 TATTTTTGTC
* ***
42289631 CACACGGGTAGACACACGGGTGTGTGTCCTGTTTTTGTA
1 CACACGGGTAGACACACGGGTGTGTGTCCAGTCCGTGTA
*
42289670 CACACGGGTAGAGACACGGGTGTGTGTCTCAG-CCGTGTA
1 CACACGGGTAGACACACGGGTGTGTGTC-CAGTCCGTGTA
42289709 C
1 C
42289710 GATACATGGC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
39 32 0.94
40 2 0.06
ACGTcount: A:0.19, C:0.23, G:0.33, T:0.25
Consensus pattern (39 bp):
CACACGGGTAGACACACGGGTGTGTGTCCAGTCCGTGTA
Found at i:42297839 original size:13 final size:13
Alignment explanation
Indices: 42297821--42297852 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
42297811 AATATATGTA
42297821 TTTTTTTT-A-CT
1 TTTTTTTTCACCT
42297832 TTTTTTTTCACCT
1 TTTTTTTTCACCT
42297845 TTTTTTTT
1 TTTTTTTT
42297853 TCAATGGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 1 0.05
13 10 0.53
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTTTTCACCT
Found at i:42298810 original size:6 final size:6
Alignment explanation
Indices: 42298796--42298893 Score: 144
Period size: 6 Copynumber: 16.5 Consensus size: 6
42298786 AATATAGTTC
* * * *
42298796 AAAAA- AAAAAG AAAAAG AAAAAG AAAAAT AAAAAT AAAAAT AGAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
*
42298843 AAAAAT AAAAAT AGAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
42298891 AAA
1 AAA
42298894 GACAAATGGA
Statistics
Matches: 87, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
5 5 0.06
6 82 0.94
ACGTcount: A:0.83, C:0.00, G:0.05, T:0.12
Consensus pattern (6 bp):
AAAAAT
Found at i:42300538 original size:3 final size:3
Alignment explanation
Indices: 42300532--42300567 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
42300522 TAGTAAAAAC
42300532 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
42300568 AAGAGGAATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:42306116 original size:25 final size:23
Alignment explanation
Indices: 42306088--42306139 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
42306078 TTGCACCAAT
42306088 TCAAAAATATAATTCATATATAATA
1 TCAAAAATATAA--CATATATAATA
** *
42306113 TCAACCATTTAACATATATAATA
1 TCAAAAATATAACATATATAATA
42306136 TCAA
1 TCAA
42306140 TAACGACAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 15 0.62
25 9 0.38
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (23 bp):
TCAAAAATATAACATATATAATA
Found at i:42306499 original size:17 final size:17
Alignment explanation
Indices: 42306479--42306537 Score: 100
Period size: 17 Copynumber: 3.5 Consensus size: 17
42306469 AAATAAGCAA
*
42306479 AGTAAGTTATAAAGCTT
1 AGTAAGCTATAAAGCTT
*
42306496 AGTAAGCTATAAGGCTT
1 AGTAAGCTATAAAGCTT
42306513 AGTAAGCTATAAAGCTT
1 AGTAAGCTATAAAGCTT
42306530 AGTAAGCT
1 AGTAAGCT
42306538 TGTATGAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 39 1.00
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.31
Consensus pattern (17 bp):
AGTAAGCTATAAAGCTT
Found at i:42306502 original size:9 final size:9
Alignment explanation
Indices: 42306490--42306538 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
42306480 GTAAGTTATA
42306490 AAGCTTAGT
1 AAGCTTAGT
42306499 AAGC-TA-T
1 AAGCTTAGT
42306506 AAGGCTTAGT
1 AA-GCTTAGT
42306516 AAGC-TA-T
1 AAGCTTAGT
42306523 AAAGCTTAGT
1 -AAGCTTAGT
42306533 AAGCTT
1 AAGCTT
42306539 GTATGAAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
7 4 0.12
8 10 0.29
9 16 0.47
10 4 0.12
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (9 bp):
AAGCTTAGT
Found at i:42309151 original size:27 final size:27
Alignment explanation
Indices: 42309121--42309314 Score: 202
Period size: 27 Copynumber: 7.4 Consensus size: 27
42309111 TTATGTGATG
*
42309121 AAATGACAGAAATACCCTTATAGGGTA
1 AAATGACAGAAATACCCCTATAGGGTA
*
42309148 AAATGACTGAAATACCCCTAT---G--
1 AAATGACAGAAATACCCCTATAGGGTA
* *
42309170 AAATGATAGAAATACCCTTATAGGGTA
1 AAATGACAGAAATACCCCTATAGGGTA
42309197 AAATGACTA-AAATACCCCTATAGGGTA
1 AAATGAC-AGAAATACCCCTATAGGGTA
*
42309224 AAATGACTGAAATACCCCTATAGGGTA
1 AAATGACAGAAATACCCCTATAGGGTA
* * * * *
42309251 GAATGACCGAAATACTCTTGTAGGGTA
1 AAATGACAGAAATACCCCTATAGGGTA
* * * * *
42309278 AAATAACTGTAATACCCCGATAAGGTA
1 AAATGACAGAAATACCCCTATAGGGTA
42309305 AAATGACAGA
1 AAATGACAGA
42309315 TTTTTTCTAC
Statistics
Matches: 135, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
22 18 0.13
24 1 0.01
25 1 0.01
27 114 0.84
28 1 0.01
ACGTcount: A:0.43, C:0.16, G:0.18, T:0.23
Consensus pattern (27 bp):
AAATGACAGAAATACCCCTATAGGGTA
Found at i:42309184 original size:49 final size:49
Alignment explanation
Indices: 42309118--42309265 Score: 190
Period size: 49 Copynumber: 2.9 Consensus size: 49
42309108 CCCTTATGTG
*
42309118 ATGAAATGACAGAAATACCCTTATAGGGTAAAATGACTGAAATACCCCT
1 ATGAAATGATAGAAATACCCTTATAGGGTAAAATGACTGAAATACCCCT
*
42309167 ATGAAATGATAGAAATACCCTTATAGGGTAAAATGACTAAAATACCCCT
1 ATGAAATGATAGAAATACCCTTATAGGGTAAAATGACTGAAATACCCCT
* * *
42309216 ATAGGGTAAAATGACT-GAAATACCCCTATAGGGTAGAATGACCGAAATAC
1 AT---G--AAATGA-TAGAAATACCCTTATAGGGTAAAATGACTGAAATAC
42309266 TCTTGTAGGG
Statistics
Matches: 87, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
49 49 0.56
52 1 0.01
54 36 0.41
55 1 0.01
ACGTcount: A:0.43, C:0.17, G:0.18, T:0.22
Consensus pattern (49 bp):
ATGAAATGATAGAAATACCCTTATAGGGTAAAATGACTGAAATACCCCT
Found at i:42309234 original size:76 final size:79
Alignment explanation
Indices: 42309121--42309311 Score: 237
Period size: 81 Copynumber: 2.4 Consensus size: 79
42309111 TTATGTGATG
* *
42309121 AAATGAC-AGAAATACCCTTATAGGGTAAAATGACTGAAATACCCCTAT-G-A-AATGATAGAAA
1 AAATGACTA-AAATACCCCTATAGGGTAAAATGACTGAAATACCCCTATGGTAGAATGACAGAAA
42309182 TACCCTTATAGGGTA
65 TACCCTTATAGGGTA
*
42309197 AAATGACTAAAATACCCCTATAGGGTAAAATGACTGAAATACCCCTATAGGGTAGAATGACCGAA
1 AAATGACTAAAATACCCCTATAGGGTAAAATGACTGAAATACCCCTAT--GGTAGAATGACAGAA
* *
42309262 ATACTCTTGTAGGGTA
64 ATACCCTTATAGGGTA
* ** * *
42309278 AAATAACTGTAATACCCCGATAAGGTAAAATGAC
1 AAATGACTAAAATACCCCTATAGGGTAAAATGAC
42309312 AGATTTTTTC
Statistics
Matches: 99, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
76 45 0.45
77 1 0.01
79 1 0.01
80 1 0.01
81 51 0.52
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (79 bp):
AAATGACTAAAATACCCCTATAGGGTAAAATGACTGAAATACCCCTATGGTAGAATGACAGAAAT
ACCCTTATAGGGTA
Found at i:42309369 original size:26 final size:24
Alignment explanation
Indices: 42309339--42309392 Score: 58
Period size: 23 Copynumber: 2.2 Consensus size: 24
42309329 TGTATGACTG
*
42309339 TGTTGAGCATGCCATG-ATTATATGTA
1 TGTTG-GCAT-CCATGTATAATAT-TA
42309365 TGTT-GCATCCATGTATAATATTA
1 TGTTGGCATCCATGTATAATATTA
42309388 TGTTG
1 TGTTG
42309393 TATTGCATGG
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
23 11 0.44
24 10 0.40
26 4 0.16
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (24 bp):
TGTTGGCATCCATGTATAATATTA
Found at i:42309377 original size:23 final size:24
Alignment explanation
Indices: 42309345--42309392 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
42309335 ACTGTGTTGA
*
42309345 GCATGCCATG-ATTATATGTATGTT
1 GCATGCCATGTATAATAT-TATGTT
42309369 GCAT-CCATGTATAATATTATGTT
1 GCATGCCATGTATAATATTATGTT
42309392 G
1 G
42309393 TATTGCATGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.42
Consensus pattern (24 bp):
GCATGCCATGTATAATATTATGTT
Found at i:42309678 original size:18 final size:19
Alignment explanation
Indices: 42309655--42309706 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
42309645 TCTGCTTGCA
42309655 TACTGCACTGATTACT-GT
1 TACTGCACTGATTACTGGT
*
42309673 TACTGCATTGATTA-TGGT
1 TACTGCACTGATTACTGGT
* *
42309691 TACTGTACTGACTACT
1 TACTGCACTGATTACT
42309707 ATTATTGAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 1 0.04
18 26 0.93
19 1 0.04
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.40
Consensus pattern (19 bp):
TACTGCACTGATTACTGGT
Found at i:42309740 original size:34 final size:34
Alignment explanation
Indices: 42309696--42309798 Score: 134
Period size: 34 Copynumber: 3.0 Consensus size: 34
42309686 ATGGTTACTG
* *
42309696 TACTGACTACTATTATTGAAATGGGCTAAGGCCCA
1 TACTG-CTACTGTTACTGAAATGGGCTAAGGCCCA
42309731 TACTGCTACTGTTACTGAAATGGGCTAAGGCCCA
1 TACTGCTACTGTTACTGAAATGGGCTAAGGCCCA
* * * * *
42309765 GACTGTTACCGTTACTGATATGGGCTTAGGCCCA
1 TACTGCTACTGTTACTGAAATGGGCTAAGGCCCA
42309799 GAATGTATTC
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
34 56 0.92
35 5 0.08
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (34 bp):
TACTGCTACTGTTACTGAAATGGGCTAAGGCCCA
Found at i:42315322 original size:20 final size:21
Alignment explanation
Indices: 42315284--42315322 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
42315274 TCGAGTTGGT
42315284 CACACGGGCGTGTTGCCCTTC
1 CACACGGGCGTGTTGCCCTTC
42315305 CACACGGGCGTG-TGCCCT
1 CACACGGGCGTGTTGCCCT
42315323 GTTTTAAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.38, G:0.31, T:0.21
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTC
Found at i:42323313 original size:23 final size:24
Alignment explanation
Indices: 42323277--42323321 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
42323267 AAATATAACA
* *
42323277 TAAAAGAAATAAAAAAATGAAACG
1 TAAAAGAAAGAAAAAAAGGAAACG
42323301 TAAAAG-AAGAAAAAAAGGAAA
1 TAAAAGAAAGAAAAAAAGGAAA
42323322 GAAAGTTACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.73, C:0.02, G:0.16, T:0.09
Consensus pattern (24 bp):
TAAAAGAAAGAAAAAAAGGAAACG
Found at i:42324074 original size:10 final size:10
Alignment explanation
Indices: 42324059--42324083 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
42324049 GAAAGTGATG
42324059 TAAATTGAAT
1 TAAATTGAAT
42324069 TAAATTGAAT
1 TAAATTGAAT
42324079 TAAAT
1 TAAAT
42324084 AAGTGAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (10 bp):
TAAATTGAAT
Found at i:42324382 original size:39 final size:39
Alignment explanation
Indices: 42324274--42324408 Score: 114
Period size: 39 Copynumber: 3.4 Consensus size: 39
42324264 GACCTCGAGT
* * *
42324274 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGCTAG-TC
** ** * *
42324315 CGATGAGGTACTGGGTACCAACT-GTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
*
42324353 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAACTATTACTTCG-GCTAGTC
*
42324392 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
42324409 CCATATTGGT
Statistics
Matches: 74, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
38 19 0.26
39 34 0.46
40 4 0.05
41 15 0.20
42 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
Found at i:42325639 original size:16 final size:16
Alignment explanation
Indices: 42325618--42325655 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
42325608 ATATATATAT
*
42325618 CATTACCATTTTACTC
1 CATTACCATTTTACCC
42325634 CATTACCATTTTACCC
1 CATTACCATTTTACCC
42325650 CATTAC
1 CATTAC
42325656 TAAGACAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.26, C:0.34, G:0.00, T:0.39
Consensus pattern (16 bp):
CATTACCATTTTACCC
Found at i:42326834 original size:43 final size:41
Alignment explanation
Indices: 42326668--42326835 Score: 126
Period size: 43 Copynumber: 4.0 Consensus size: 41
42326658 ATATCGTATA
* * * **
42326668 ATGCCAACGTCCCAAACGTGGTCTTACATGCAATCACATATTG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAAAACATA-TG
*
42326711 ATGCC-ACTGTCCCAGACAAGGTCTTACACGAATAAA-ATATG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAA-AAACATATG
* * * * *
42326752 TTGCCAATGTCCCAGACATAGTCTTTCAC-ATAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGA-AA-AACATAT-G
* *
42326795 ATGCCAACGTCCTAGACGTGGTCTTACACGATAAAACATAT
1 ATGCCAACGTCCCAGACATGGTCTTACACGA-AAAACATAT
42326836 AGAAAATCCT
Statistics
Matches: 98, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
40 2 0.02
41 26 0.27
42 12 0.12
43 54 0.55
44 4 0.04
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (41 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAAAACATATG
Found at i:42336812 original size:57 final size:57
Alignment explanation
Indices: 42336678--42336834 Score: 174
Period size: 57 Copynumber: 2.8 Consensus size: 57
42336668 ATCCCTCTCA
* * * * * * *
42336678 AGCATATGTTACA-ATTAGAATTTAGCCAGGACTGGTAATCCTAATTGAGCTCTTCTG
1 AGCATATGTTACAGA-AAGGATTTAGCCTGGACTAGTAATCCTGATTAAGCTCTTATG
*
42336735 AGCATATGTTACAGAAAGGATTTAGCCTGGACTAGTGATCCTGATTAAGCTCTTATG
1 AGCATATGTTACAGAAAGGATTTAGCCTGGACTAGTAATCCTGATTAAGCTCTTATG
** * *
42336792 AGCATATGTTGGA-AACAGGATTTAGCTTGGACAAGTAATCCTG
1 AGCATATGTTACAGAA-AGGATTTAGCCTGGACTAGTAATCCTG
42336835 TTATATGATA
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
56 2 0.02
57 82 0.96
58 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (57 bp):
AGCATATGTTACAGAAAGGATTTAGCCTGGACTAGTAATCCTGATTAAGCTCTTATG
Found at i:42342320 original size:14 final size:15
Alignment explanation
Indices: 42342287--42342320 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
42342277 GATTTCTTGT
*
42342287 TTTTCGTTTATTTAC
1 TTTTCATTTATTTAC
42342302 TTTTCATTTATTT-C
1 TTTTCATTTATTTAC
42342316 TTTTC
1 TTTTC
42342321 TTATTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.12, C:0.15, G:0.03, T:0.71
Consensus pattern (15 bp):
TTTTCATTTATTTAC
Found at i:42346727 original size:133 final size:131
Alignment explanation
Indices: 42346504--42346851 Score: 343
Period size: 133 Copynumber: 2.7 Consensus size: 131
42346494 AATAGAAAAT
* * * * *
42346504 TAAAATACATAACGATATTTTAAGG--TTGTTAATA--CTAACGTTTAACAACAATTTATTTTGT
1 TAAATTACATAACGATATTTTAAGGTTTTGTTAATATTTTAACGTTTAACAACAACTTGTTAT-T
* ** * *
42346565 CGTTACAGATTTTATTAATAATTCACAATGACAAATTGTGTCATTGCTATTAATAAGTAA-AAAA
65 -GTTACAAATTTTATTAATAATTCACAATGACAAATCATGTCATTGCGATGAATAAG-AATAAAA
42346629 TAAA
128 TAAA
* *
42346633 TAAATTACATAACGATATTTTAAGGTTATTGTTAATATTTTAACGTTTAACAATAACTTGTGTCT
1 TAAATTACATAACGATATTTTAAGGTT-TTGTTAATATTTTAACGTTTAACAACAACTTGT-TAT
* * * *
42346698 TGTTATAAATTTTATTAAAAATTCGCAATGACAAATCATGTCGTTGCGATGAATAAGAATAAAAT
64 TGTTACAAATTTTATTAATAATTCACAATGACAAATCATGTCATTGCGATGAATAAGAATAAAAT
*
42346763 TAA
129 AAA
** * * * * *
42346766 TTTATT-C--AACAATATTTTAATGTTGCTGATAATATTTTAACGTTTAGCAACAACTTGTTTGA
1 TAAATTACATAACGATATTTTAAGGTT-TTGTTAATATTTTAACGTTTAACAACAACTTG-TT-A
*
42346828 TTGTTACACATTTTATTAATAATT
63 TTGTTACAAATTTTATTAATAATT
42346852 GATGACGATA
Statistics
Matches: 181, Mismatches: 29, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
129 24 0.13
130 44 0.24
131 22 0.12
132 12 0.07
133 58 0.32
134 19 0.10
135 2 0.01
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.41
Consensus pattern (131 bp):
TAAATTACATAACGATATTTTAAGGTTTTGTTAATATTTTAACGTTTAACAACAACTTGTTATTG
TTACAAATTTTATTAATAATTCACAATGACAAATCATGTCATTGCGATGAATAAGAATAAAATAA
A
Found at i:42347841 original size:59 final size:59
Alignment explanation
Indices: 42347749--42347865 Score: 216
Period size: 59 Copynumber: 2.0 Consensus size: 59
42347739 CAAAGAAATG
*
42347749 TAGTTATGTAAGGAATGCTTTTTTGGGGGGGCGAGGGGGGTTGATAAGGAAGTGTAGGA
1 TAGTTATGTAAGGAATGCTTTTTTGGGGGGGCGAGGGGGGTTGATAAGGAAATGTAGGA
*
42347808 TAGTTATGTAAGGAATGCTTTTTTTGGGGGGCGAGGGGGGTTGATAAGGAAATGTAGG
1 TAGTTATGTAAGGAATGCTTTTTTGGGGGGGCGAGGGGGGTTGATAAGGAAATGTAGG
42347866 GAATGTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.24, C:0.03, G:0.43, T:0.30
Consensus pattern (59 bp):
TAGTTATGTAAGGAATGCTTTTTTGGGGGGGCGAGGGGGGTTGATAAGGAAATGTAGGA
Found at i:42347877 original size:60 final size:59
Alignment explanation
Indices: 42347749--42347882 Score: 198
Period size: 59 Copynumber: 2.2 Consensus size: 59
42347739 CAAAGAAATG
* *
42347749 TAGTTATGTAAGGAATGCTTTTTTGGGGGGGCGAGGGGGGTTGATAAGGAAGTGTAGGA
1 TAGTCATGTAAGGAATGCTTTTTTGGGGGGGCGAGGGGGGTTGATAAGGAAATGTAGGA
* *
42347808 TAGTTATGTAAGGAATGCTTTTTTTGGGGGGCGAGGGGGGTTGATAAGGAAATGTAGGGA
1 TAGTCATGTAAGGAATGCTTTTTTGGGGGGGCGAGGGGGGTTGATAAGGAAATGTA-GGA
42347868 -ATGTCATGTAGAGGA
1 TA-GTCATGTA-AGGA
42347883 TACCTAACAA
Statistics
Matches: 69, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
59 55 0.80
60 10 0.14
61 4 0.06
ACGTcount: A:0.25, C:0.04, G:0.42, T:0.29
Consensus pattern (59 bp):
TAGTCATGTAAGGAATGCTTTTTTGGGGGGGCGAGGGGGGTTGATAAGGAAATGTAGGA
Found at i:42352259 original size:31 final size:31
Alignment explanation
Indices: 42352221--42352293 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 31
42352211 TATTTATTTT
*
42352221 TTACATGTGTACGA-TTGAAT-CAAAATTAACG
1 TTACATGTGTAC-ATTTG-ATCCAAAATTAAAG
* * *
42352252 TTTCATGTATACATTTGATCCATAATTAAAG
1 TTACATGTGTACATTTGATCCAAAATTAAAG
42352283 TTACATGTGTA
1 TTACATGTGTA
42352294 TAATTATATC
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
30 3 0.09
31 31 0.91
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (31 bp):
TTACATGTGTACATTTGATCCAAAATTAAAG
Found at i:42353817 original size:29 final size:30
Alignment explanation
Indices: 42353784--42353845 Score: 90
Period size: 31 Copynumber: 2.1 Consensus size: 30
42353774 GTTTCACGTG
* *
42353784 TATAATTACAC-TAAATTAAAATTTATATA
1 TATAATTACACATAAATCAAAATTCATATA
42353813 TATAATTACACATTAAATCAAAATTCATATA
1 TATAATTACACA-TAAATCAAAATTCATATA
42353844 TA
1 TA
42353846 ATTTTAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 11 0.38
31 18 0.62
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.39
Consensus pattern (30 bp):
TATAATTACACATAAATCAAAATTCATATA
Found at i:42353846 original size:29 final size:29
Alignment explanation
Indices: 42353784--42353848 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
42353774 GTTTCACGTG
* *
42353784 TATAATTACACTAAATTAAAATTTATATA
1 TATAATTACACTAAATCAAAATTTACATA
42353813 TATAATTACACATTAAATCAAAA-TT-CATA
1 TATAATTACAC--TAAATCAAAATTTACATA
42353842 TATAATT
1 TATAATT
42353849 TTAAAATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 21 0.66
30 2 0.06
31 9 0.28
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (29 bp):
TATAATTACACTAAATCAAAATTTACATA
Found at i:42356008 original size:29 final size:29
Alignment explanation
Indices: 42355966--42356025 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
42355956 CAAATATTTC
*
42355966 ATATCATTTAACATTCATGTCAGAAATCA
1 ATATCATTTAACATTCATATCAGAAATCA
42355995 ATATCATTTAACATTCATATCAGAAATCA
1 ATATCATTTAACATTCATATCAGAAATCA
42356024 AT
1 AT
42356026 CATATTCAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.43, C:0.17, G:0.05, T:0.35
Consensus pattern (29 bp):
ATATCATTTAACATTCATATCAGAAATCA
Found at i:42356016 original size:16 final size:16
Alignment explanation
Indices: 42355963--42356016 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
42355953 ATACAAATAT
42355963 TTCATATCATTTAACA
1 TTCATATCATTTAACA
* *
42355979 TTCATGTCA--GAA-A
1 TTCATATCATTTAACA
42355992 -TCAATATCATTTAACA
1 TTC-ATATCATTTAACA
42356008 TTCATATCA
1 TTCATATCA
42356017 GAAATCAATC
Statistics
Matches: 29, Mismatches: 4, Indels: 10
0.67 0.09 0.23
Matches are distributed among these distances:
12 2 0.07
13 6 0.21
14 2 0.07
15 2 0.07
16 15 0.52
17 2 0.07
ACGTcount: A:0.39, C:0.19, G:0.04, T:0.39
Consensus pattern (16 bp):
TTCATATCATTTAACA
Found at i:42374873 original size:352 final size:352
Alignment explanation
Indices: 42374229--42388216 Score: 27976
Period size: 352 Copynumber: 39.7 Consensus size: 352
42374219 ATATTTGTAG
42374229 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42374294 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42374359 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42374424 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42374489 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42374554 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42374581 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42374646 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42374711 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42374776 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42374841 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42374906 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42374933 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42374998 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42375063 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42375128 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42375193 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42375258 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42375285 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42375350 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42375415 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42375480 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42375545 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42375610 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42375637 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42375702 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42375767 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42375832 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42375897 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42375962 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42375989 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42376054 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42376119 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42376184 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42376249 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42376314 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42376341 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42376406 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42376471 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42376536 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42376601 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42376666 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42376693 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42376758 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42376823 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42376888 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42376953 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42377018 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42377045 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42377110 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42377175 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42377240 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42377305 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42377370 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42377397 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42377462 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42377527 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42377592 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42377657 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42377722 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42377749 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42377814 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42377879 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42377944 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42378009 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42378074 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42378101 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42378166 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42378231 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42378296 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42378361 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42378426 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42378453 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42378518 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42378583 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42378648 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42378713 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42378778 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42378805 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42378870 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42378935 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42379000 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42379065 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42379130 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42379157 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42379222 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42379287 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42379352 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42379417 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42379482 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42379509 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42379574 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42379639 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42379704 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42379769 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42379834 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42379861 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42379926 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42379991 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42380056 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42380121 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42380186 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42380213 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42380278 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42380343 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42380408 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42380473 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42380538 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42380565 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42380630 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42380695 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42380760 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42380825 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42380890 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42380917 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42380982 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42381047 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42381112 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42381177 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42381242 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42381269 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42381334 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42381399 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42381464 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42381529 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42381594 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42381621 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42381686 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42381751 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42381816 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42381881 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42381946 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42381973 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42382038 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42382103 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42382168 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42382233 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42382298 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42382325 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42382390 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42382455 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42382520 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42382585 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42382650 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42382677 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42382742 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42382807 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42382872 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42382937 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42383002 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42383029 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42383094 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42383159 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42383224 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42383289 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42383354 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42383381 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42383446 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42383511 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42383576 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42383641 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42383706 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42383733 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42383798 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42383863 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42383928 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42383993 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42384058 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42384085 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42384150 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42384215 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42384280 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42384345 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42384410 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42384437 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42384502 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42384567 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42384632 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42384697 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42384762 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42384789 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42384854 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42384919 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42384984 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42385049 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42385114 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42385141 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42385206 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42385271 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42385336 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42385401 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42385466 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42385493 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42385558 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42385623 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42385688 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42385753 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42385818 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42385845 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42385910 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42385975 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42386040 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42386105 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42386170 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42386197 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42386262 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42386327 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42386392 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42386457 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42386522 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42386549 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42386614 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42386679 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42386744 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42386809 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42386874 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42386901 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42386966 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42387031 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42387096 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42387161 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42387226 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42387253 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42387318 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42387383 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42387448 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42387513 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42387578 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42387605 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42387670 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42387735 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42387800 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42387865 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
261 TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
42387930 AGATTGACGACCCTTAGGGTCGTCAAT
326 AGATTGACGACCCTTAGGGTCGTCAAT
42387957 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
1 CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
42388022 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
66 TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
42388087 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
131 TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
42388152 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
196 ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
42388217 ATTCCATGGA
Statistics
Matches: 13636, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
352 13636 1.00
ACGTcount: A:0.25, C:0.13, G:0.15, T:0.47
Consensus pattern (352 bp):
CTTTAGTTTAATGCATTTCAGTTTCCTTTACTTTAAATCTATTAAAGTTTGTTCCTTTTATGTTT
TTTACTTTTGATTTTTATGTTGTACGCTTCTCTTTATATTTCCTTTAAGTTTCTTTGCATAAAAA
TTTGAACTTTTGTATTTTTCTTAAGCTTTTCTTTAATGGCTTTCGTGCTTTTCATTTTTATGTTC
ATTAGCTTTATTTTTCACATGAGTAACTAAACTTTAAAGGGGTTGGTTGATGGAAATGTGATCAG
TTGATTTTTGAATGAGGGATCAAATTGTAATAAATTGGACTAATTTGAATGAACCTAGAAACTTA
AGATTGACGACCCTTAGGGTCGTCAAT
Found at i:42407833 original size:47 final size:47
Alignment explanation
Indices: 42407764--42407858 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
42407754 AGGGAGTAAG
42407764 CATAAATCTTAGTAAGTTGCAAGCAAATAAATATAACAACAACTCTA
1 CATAAATCTTAGTAAGTTGCAAGCAAATAAATATAACAACAACTCTA
*
42407811 CATAAATCTTAGTAAGTTGCAAGCAAATAAATATAACAACATCTCTA
1 CATAAATCTTAGTAAGTTGCAAGCAAATAAATATAACAACAACTCTA
42407858 C
1 C
42407859 CATTCATCAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.47, C:0.18, G:0.08, T:0.26
Consensus pattern (47 bp):
CATAAATCTTAGTAAGTTGCAAGCAAATAAATATAACAACAACTCTA
Found at i:42408328 original size:94 final size:93
Alignment explanation
Indices: 42408097--42408363 Score: 278
Period size: 94 Copynumber: 2.9 Consensus size: 93
42408087 GAATGCCGAC
* *
42408097 GCCATGTCCCAGACATGGTCTTACACTGACACCTCTATATGT-GCCGATTCCATGTCCCAGACAT
1 GCCATGTCCCAGACATGGTCTTACACTGAC-TCTCTA-ATGTGGCCGA-TGCATGTCCCAGACAT
* *
42408161 GGTCTTACACT-G-ACACATCTCATAGCCGAT
63 -GTCTTACACTAGCTCACATCTCATAGCAGAT
* * * * * *
42408191 G-CATGTCCCAGACAT-GTCTTACACTGGCT-TACTTCACGAGGCCGATGAATGTCTCAGACATG
1 GCCATGTCCCAGACATGGTCTTACACTGACTCT-C-TAATGTGGCCGATGCATGTCCCAGACATG
* * * *
42408253 TCTTACTCTAGCTCTCGTCTCA-ATGTAGAT
64 TCTTACACTAGCTCACATCTCATA-GCAGAT
*
42408283 GCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATGTGGCCGATGCATGTCCCAAACATGT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTC-TAATGTGGCCGATGCATGTCCCAGACATGT
42408348 CTTACACTAGCTCACA
65 CTTACACTAGCTCACA
42408364 ATAACCCATA
Statistics
Matches: 139, Mismatches: 25, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
90 10 0.07
91 18 0.13
92 30 0.22
93 28 0.20
94 52 0.37
95 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (93 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTCTCTAATGTGGCCGATGCATGTCCCAGACATGTC
TTACACTAGCTCACATCTCATAGCAGAT
Found at i:42408332 original size:48 final size:44
Alignment explanation
Indices: 42408090--42408355 Score: 198
Period size: 48 Copynumber: 5.7 Consensus size: 44
42408080 TGGGGTAGAA
* *
42408090 TGCCGACGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATATG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGAC-TCTCTA-ATG
* * *
42408138 TGCCGATTCCATGTCCCAGACATGGTCTTACACTGACACATCTCAT-
1 TGCCGA-TGCATGTCCCAGACAT-GTCTTACACTGACTC-TCTAATG
* * * *
42408184 AGCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACTTCACG
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGACTCT-C-TAATG
* * * * *
42408229 AGGCCGATGAATGTCTCAGACATGTCTTACTCTAGCTCTCGTCTCAATG
1 -TGCCGATGCATGTCCCAGACATGTCTTACACT-G-ACTC-TCT-AATG
*
42408278 T--AGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGACTCTC-TAATG
*
42408323 TGGCCGATGCATGTCCCAAACATGTCTTACACT
1 T-GCCGATGCATGTCCCAGACATGTCTTACACT
42408356 AGCTCACAAT
Statistics
Matches: 177, Mismatches: 24, Indels: 36
0.75 0.10 0.15
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 15 0.08
45 22 0.12
46 51 0.29
47 30 0.17
48 53 0.30
49 3 0.02
50 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (44 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGACTCTCTAATG
Found at i:42410147 original size:15 final size:15
Alignment explanation
Indices: 42410127--42410155 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
42410117 TTGAAAATTG
42410127 TTCCCTTTTTTTTGA
1 TTCCCTTTTTTTTGA
42410142 TTCCCTTTTTTTTG
1 TTCCCTTTTTTTTG
42410156 TCGAGATTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.21, G:0.07, T:0.69
Consensus pattern (15 bp):
TTCCCTTTTTTTTGA
Found at i:42411845 original size:16 final size:16
Alignment explanation
Indices: 42411826--42411886 Score: 50
Period size: 16 Copynumber: 3.4 Consensus size: 16
42411816 CTAGGTGGAT
42411826 TCTTTCCTAGGTATTA
1 TCTTTCCTAGGTATTA
*
42411842 TCTTTCTCTTTGGTTATCTTGA
1 TCTTTC-C-TAGG-TA--TT-A
42411864 TTCTTTCCTAGGTATTA
1 -TCTTTCCTAGGTATTA
42411881 TCTTTC
1 TCTTTC
42411887 TCTTTGGTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
16 12 0.33
17 2 0.06
18 5 0.14
19 2 0.06
20 2 0.06
21 5 0.14
22 2 0.06
23 6 0.17
ACGTcount: A:0.13, C:0.20, G:0.11, T:0.56
Consensus pattern (16 bp):
TCTTTCCTAGGTATTA
Found at i:42411869 original size:23 final size:21
Alignment explanation
Indices: 42411839--42411900 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
42411829 TTCCTAGGTA
42411839 TTATCTTTCTCTTTGGTTATC
1 TTATCTTTCTCTTTGGTTATC
*
42411860 TTGATTCTTTC-C-TAGG-TA--
1 TT-A-TCTTTCTCTTTGGTTATC
42411878 TTATCTTTCTCTTTGGTTATC
1 TTATCTTTCTCTTTGGTTATC
42411899 TT
1 TT
42411901 CTATTATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 14
0.67 0.04 0.29
Matches are distributed among these distances:
16 6 0.19
17 2 0.06
18 5 0.16
19 2 0.06
20 2 0.06
21 7 0.22
22 2 0.06
23 6 0.19
ACGTcount: A:0.11, C:0.18, G:0.11, T:0.60
Consensus pattern (21 bp):
TTATCTTTCTCTTTGGTTATC
Found at i:42411877 original size:39 final size:39
Alignment explanation
Indices: 42411823--42411900 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
42411813 AGTCTAGGTG
42411823 GATTCTTTCCTAGGTATTATCTTTCTCTTTGGTTATCTT
1 GATTCTTTCCTAGGTATTATCTTTCTCTTTGGTTATCTT
42411862 GATTCTTTCCTAGGTATTATCTTTCTCTTTGGTTATCTT
1 GATTCTTTCCTAGGTATTATCTTTCTCTTTGGTTATCTT
42411901 CTATTATTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.13, C:0.18, G:0.13, T:0.56
Consensus pattern (39 bp):
GATTCTTTCCTAGGTATTATCTTTCTCTTTGGTTATCTT
Found at i:42413933 original size:30 final size:30
Alignment explanation
Indices: 42413886--42413944 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
42413876 AGAGGTGGGA
42413886 TGGGAGGGGAATAAAAGTTTTAGGGGGAAAG
1 TGGGAGGGGAATAAAAGTTTT-GGGGGAAAG
*
42413917 TGGGA-GGGAGTAAAAGTTTTGGGGGAAA
1 TGGGAGGGGAATAAAAGTTTTGGGGGAAA
42413945 AGAAAAAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 8 0.30
30 14 0.52
31 5 0.19
ACGTcount: A:0.34, C:0.00, G:0.46, T:0.20
Consensus pattern (30 bp):
TGGGAGGGGAATAAAAGTTTTGGGGGAAAG
Found at i:42414093 original size:128 final size:129
Alignment explanation
Indices: 42413917--42414160 Score: 359
Period size: 129 Copynumber: 1.9 Consensus size: 129
42413907 AGGGGGAAAG
* * *
42413917 TGGGAGGGAGTAAAAGTTTTGGGGGAAAAGAAAAAAGTTTTGAGGGTTTTT-GGGGATTAAAATT
1 TGGGAGGGAGTAAAAGTTTTCGGGGAAAAGAAAAAAGTTTTGAAGGTTTTTGGGGGAGTAAAATT
* * *
42413981 TTGGAGGAAATTAAATGGAGGG-GTAAAATGGGGGGAAATGGATTTGGGGTAGATAGGGGTAGGA
66 TAGGAGGAAAATAAATGG-GGGAGTAAAATAGGGGGAAATGGATTTGGGGTAGATAGGGGTAGGA
*
42414045 TGGGAGGGGAGTAAAAGTTTTCGGGGAAAA-TAAAAAGTTTTGAAGGTTTTTGGGGGAGTAAAAT
1 TGGGA-GGGAGTAAAAGTTTTCGGGGAAAAGAAAAAAGTTTTGAAGGTTTTTGGGGGAGTAAAAT
* * *
42414109 TTAGGGGGAAAATAAATGGGGGAGTAAAATAGGGGTAAATGGGTTTGGGGTA
65 TTAGGAGGAAAATAAATGGGGGAGTAAAATAGGGGGAAATGGATTTGGGGTA
42414161 AATGAGGGTG
Statistics
Matches: 103, Mismatches: 10, Indels: 5
0.87 0.08 0.04
Matches are distributed among these distances:
128 27 0.26
129 76 0.74
ACGTcount: A:0.34, C:0.00, G:0.40, T:0.26
Consensus pattern (129 bp):
TGGGAGGGAGTAAAAGTTTTCGGGGAAAAGAAAAAAGTTTTGAAGGTTTTTGGGGGAGTAAAATT
TAGGAGGAAAATAAATGGGGGAGTAAAATAGGGGGAAATGGATTTGGGGTAGATAGGGGTAGGA
Found at i:42425147 original size:23 final size:23
Alignment explanation
Indices: 42425121--42425170 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
42425111 ACATAACAGA
42425121 GTCCATTCGTACACATGCATATC
1 GTCCATTCGTACACATGCATATC
* *
42425144 GTCCATTCGTACATATGTATATC
1 GTCCATTCGTACACATGCATATC
42425167 GTCC
1 GTCC
42425171 CTTAATCGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.34
Consensus pattern (23 bp):
GTCCATTCGTACACATGCATATC
Found at i:42434748 original size:28 final size:29
Alignment explanation
Indices: 42434716--42434830 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
42434706 TACCTGTATC
* * *
42434716 TGGCCCATTAAGCCC-ATTCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
42434744 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
42434773 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* * *
42434802 TGGCCCGTTAGG-CCTAGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
42434830 T
1 T
42434831 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 29 0.39
29 45 0.60
30 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:42434771 original size:57 final size:58
Alignment explanation
Indices: 42434707--42434815 Score: 157
Period size: 58 Copynumber: 1.9 Consensus size: 58
42434697 AAATTCACAT
* * *
42434707 ACCTGTATCTGGCCCATTAAGCCC-ATTCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
42434764 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCC
42434816 TAGTCACATT
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 22 0.49
58 23 0.51
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:42435082 original size:16 final size:16
Alignment explanation
Indices: 42435041--42435083 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
42435031 GTAGCCAAAC
42435041 TTTTGGCTTTTCGGCA
1 TTTTGGCTTTTCGGCA
* *
42435057 TTTCGACTTTTCGGCA
1 TTTTGGCTTTTCGGCA
42435073 TTTTGGCTTTT
1 TTTTGGCTTTT
42435084 GCCGATTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.07, C:0.19, G:0.21, T:0.53
Consensus pattern (16 bp):
TTTTGGCTTTTCGGCA
Found at i:42437422 original size:27 final size:27
Alignment explanation
Indices: 42437392--42437559 Score: 183
Period size: 27 Copynumber: 6.2 Consensus size: 27
42437382 CAATTTGTAA
** *
42437392 AATTACCAAAGTACCCTTGATTTACAG
1 AATTACCAATTTACCCTCGATTTACAG
* * *
42437419 AATTACTATTTTACCCTCGATTTATAG
1 AATTACCAATTTACCCTCGATTTACAG
*
42437446 AATTACCAATTTACCCTCGATTTATAG
1 AATTACCAATTTACCCTCGATTTACAG
* * *
42437473 AATTACTATTTTACCCTCGATTTATAG
1 AATTACCAATTTACCCTCGATTTACAG
**
42437500 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAATTTACCCTCGATTTACAG
* ** * *
42437527 AATTATCGTTTTACCTTCGATTTACAA
1 AATTACCAATTTACCCTCGATTTACAG
42437554 AATTAC
1 AATTAC
42437560 TGAAATACCC
Statistics
Matches: 124, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 124 1.00
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (27 bp):
AATTACCAATTTACCCTCGATTTACAG
Found at i:42437450 original size:54 final size:54
Alignment explanation
Indices: 42437378--42437617 Score: 225
Period size: 54 Copynumber: 4.4 Consensus size: 54
42437368 TACTGAAATG
* * * *
42437378 CCCTCAATTTGTAAAATTACCAAAGTACCCTTGATTTACAGAATTACTATTTTA
1 CCCTCGATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTACTATTTTA
* * *
42437432 CCCTCGATTTATAGAATTACCAATTTACCCTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTACTATTTTA
* *** *
42437486 CCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTA-TCGTTTTA
1 CCCTCGATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTACT-ATTTTA
* * * * * * * ***
42437540 CCTTCGATTTACAAAATTACTGAAA-TACCCTTGGTTTACAAAATTACCAAAATA
1 CCCTCGATTTATAAAATTAC-CAAATTACCCTCGATTTACAGAATTACTATTTTA
*
42437594 ACCTCGA-TTAGTAAAATTACCAAA
1 CCCTCGATTTA-TAAAATTACCAAA
42437618 AACCCCTAGT
Statistics
Matches: 152, Mismatches: 30, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
53 7 0.05
54 145 0.95
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.36
Consensus pattern (54 bp):
CCCTCGATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTACTATTTTA
Found at i:42437569 original size:81 final size:80
Alignment explanation
Indices: 42437390--42437588 Score: 218
Period size: 81 Copynumber: 2.5 Consensus size: 80
42437380 CTCAATTTGT
* * * *
42437390 AAAATTACCAAAGTACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCAA
1 AAAATTACTAAA-TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCAA
*
42437455 TTTACCCTCGATTTAT
65 TTTACCCTCGATTTAC
* ** * * * **
42437471 AGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTATCGT
1 AAAATTACTA-AATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCAA
*
42437536 TTTACCTTCGATTTAC
65 TTTACCCTCGATTTAC
* * *
42437552 AAAATTACTGAAATACCCTTGGTTTACAAAATTACCA
1 AAAATTACT-AAATACCCTCGATTTACAGAATTACCA
42437589 AAATAACCTC
Statistics
Matches: 94, Mismatches: 22, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
81 93 0.99
82 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.38
Consensus pattern (80 bp):
AAAATTACTAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCAAT
TTACCCTCGATTTAC
Found at i:42437655 original size:80 final size:81
Alignment explanation
Indices: 42437552--42437719 Score: 225
Period size: 80 Copynumber: 2.1 Consensus size: 81
42437542 TTCGATTTAC
* *
42437552 AAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATA-ACCTCGATTAGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACACCTCGATT-GTAAAATTACCA
42437616 AAA-ACCCCT-AGTTTGT
65 AAATACCCCTGA-TTTGT
** * * *
42437632 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGCTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACACCTCGATTGTAAAATTACCAA
42437697 AATACCCCTGATTTGT
66 AATACCCCTGATTTGT
*
42437713 GAAATTA
1 AAAATTA
42437720 TCGAAATACT
Statistics
Matches: 77, Mismatches: 8, Indels: 5
0.86 0.09 0.06
Matches are distributed among these distances:
80 53 0.69
81 23 0.30
82 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACACCTCGATTGTAAAATTACCAA
AATACCCCTGATTTGT
Found at i:42437712 original size:27 final size:27
Alignment explanation
Indices: 42437552--42437783 Score: 197
Period size: 27 Copynumber: 8.7 Consensus size: 27
42437542 TTCGATTTAC
** * * **
42437552 AAAATTACTGAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGATTTGT
* *
42437579 AAAATTACCAAAATA-ACCTCGATTAGT
1 AAAATTACCAAAATACCCCT-GATTTGT
42437606 AAAATTACCAAAA-ACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
* *
42437632 AAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
**
42437659 AAAATTACCAAAATACCCCTGGCTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
42437686 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * * *
42437713 GAAATTATCGAAATA-CTCTCGATTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
* * **
42437740 AAAA-TATCGAAATACCCCT-ATAGGGT
1 AAAATTACCAAAATACCCCTGAT-TTGT
*
42437766 AGAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
42437784 TTGTAGGGTA
Statistics
Matches: 169, Mismatches: 27, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
25 3 0.02
26 37 0.22
27 129 0.76
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:42437790 original size:27 final size:27
Alignment explanation
Indices: 42437604--42437909 Score: 203
Period size: 27 Copynumber: 11.4 Consensus size: 27
42437594 ACCTCGATTA
* **
42437604 GTAAAATTACC-AAAAACCCCTAGT-TT
1 GTAAAATTACCGAAATACCCCT-GTAGG
** **
42437630 GTAAAATTACTAAAATACCCCTGGT-TT
1 GTAAAATTACCGAAATACCCCT-GTAGG
* ****
42437657 GTAAAATTACCAAAATACCCCTGGCTT
1 GTAAAATTACCGAAATACCCCTGTAGG
* **
42437684 GTAAAATTACCAAAATACCCCTG-ATTT
1 GTAAAATTACCGAAATACCCCTGTA-GG
* * * **
42437711 GTGAAATTATCGAAATA-CTCTCG-ATTT
1 GTAAAATTACCGAAATACCCCT-GTA-GG
* *
42437738 GTAAAA-TATCGAAATACCCCTATAGG
1 GTAAAATTACCGAAATACCCCTGTAGG
* * *
42437764 GTAGAATTACCAAAATACCCTTGTAGG
1 GTAAAATTACCGAAATACCCCTGTAGG
* * *
42437791 GTAAAAATACCGAAATACCCCTATAAG
1 GTAAAATTACCGAAATACCCCTGTAGG
* * *
42437818 GTAGAATTACTGAAATACCCTTGTAGG
1 GTAAAATTACCGAAATACCCCTGTAGG
*
42437845 GTAAAAATACCGAAATACCCCTGTAGG
1 GTAAAATTACCGAAATACCCCTGTAGG
* * *
42437872 GTAAAATTACCGAGATACCCTTGTGGG
1 GTAAAATTACCGAAATACCCCTGTAGG
42437899 GTAAAATTACC
1 GTAAAATTACC
42437910 ATTTTGCCCT
Statistics
Matches: 233, Mismatches: 40, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
26 29 0.12
27 204 0.88
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.27
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCCTGTAGG
Found at i:42437811 original size:54 final size:54
Alignment explanation
Indices: 42437740--42437909 Score: 259
Period size: 54 Copynumber: 3.1 Consensus size: 54
42437730 CTCGATTTGT
* *
42437740 AAAATATCGAAATACCCCTATAGGGTAGAATTACCAAAATACCCTTGTAGGGTA
1 AAAATACCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTA
* *
42437794 AAAATACCGAAATACCCCTATAAGGTAGAATTACTGAAATACCCTTGTAGGGTA
1 AAAATACCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTA
* * * *
42437848 AAAATACCGAAATACCCCTGTAGGGTAAAATTACCGAGATACCCTTGTGGGGTA
1 AAAATACCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTA
*
42437902 AAATTACC
1 AAAATACC
42437910 ATTTTGCCCT
Statistics
Matches: 105, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 105 1.00
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (54 bp):
AAAATACCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTA
Found at i:42437919 original size:27 final size:28
Alignment explanation
Indices: 42437889--42437952 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 28
42437879 TACCGAGATA
*
42437889 CCCTTGTGGG-GTAAAATTACCATTTTG
1 CCCTTGTGGGTGTAAAATGACCATTTTG
* * **
42437916 CCC-TGAGGGTGTTAAATGACTGTTTTG
1 CCCTTGTGGGTGTAAAATGACCATTTTG
42437943 CCCTTGTGGG
1 CCCTTGTGGG
42437953 CAAGCGACTG
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
26 5 0.17
27 19 0.66
28 5 0.17
ACGTcount: A:0.17, C:0.19, G:0.28, T:0.36
Consensus pattern (28 bp):
CCCTTGTGGGTGTAAAATGACCATTTTG
Found at i:42442762 original size:56 final size:55
Alignment explanation
Indices: 42442647--42442778 Score: 201
Period size: 56 Copynumber: 2.4 Consensus size: 55
42442637 ATGGCATCGG
* ** *
42442647 TATATGTGTGCGTGTAAGACCACGTTTAAATGTTGGCATCGATATGTGACTTCGA
1 TATATGTGTGCGAGTAAGACCACGTTTAAATGTTGGCATCGATATGTGACACCAA
*
42442702 TATATGTGTGCAAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGACACCAA
1 TATATGTGTGCGAGTAAGACCACGTTTAA-ATGTTGGCATCGATATGTGACACCAA
*
42442758 TATATGTGTGTGAGTAAGACC
1 TATATGTGTGCGAGTAAGACC
42442779 TTGTCTAGGA
Statistics
Matches: 69, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
55 27 0.39
56 42 0.61
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (55 bp):
TATATGTGTGCGAGTAAGACCACGTTTAAATGTTGGCATCGATATGTGACACCAA
Found at i:42449951 original size:40 final size:40
Alignment explanation
Indices: 42449897--42450065 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
42449887 GAGCATATAA
* * ** * *
42449897 GTGCATTCAGGGGTACTGAAGTATAAATAGGGGCACGTAT
1 GTGCAATCAAGGGTACCAAAGTACAAACAGGGGCACGTAT
* *
42449937 GCGCAATCAAGGGTACCAAAGTACAAACAAGGGCACGTAT
1 GTGCAATCAAGGGTACCAAAGTACAAACAGGGGCACGTAT
* * ** *
42449977 GTGCAATCAGGGGTATCAAAGTACAAACATAGGCATGTAT
1 GTGCAATCAAGGGTACCAAAGTACAAACAGGGGCACGTAT
* * * * *
42450017 GTGCAATTAAGGGTACCAAAATATAAATAGGGGCACATAT
1 GTGCAATCAAGGGTACCAAAGTACAAACAGGGGCACGTAT
*
42450057 GTACAATCA
1 GTGCAATCA
42450066 TCAATAATTA
Statistics
Matches: 103, Mismatches: 26, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 103 1.00
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.21
Consensus pattern (40 bp):
GTGCAATCAAGGGTACCAAAGTACAAACAGGGGCACGTAT
Found at i:42450051 original size:80 final size:80
Alignment explanation
Indices: 42449867--42450065 Score: 204
Period size: 80 Copynumber: 2.5 Consensus size: 80
42449857 GTGTATTCAG
* * * * * * * *
42449867 GGGTACCAAAGA-ATAAATAGGAGCATATAAGTGCATTCAGGGGTACTGAAGTATAAATAGGGGC
1 GGGTACCAAA-ATATAAATAGGGGCACATATGTGCAATCAGGGGTACTAAAGTACAAACAGAGGC
42449931 ACGTATGCGCAATCAA
65 ACGTATGCGCAATCAA
* * * * * *
42449947 GGGTACCAAAGTACAAACAAGGGCACGTATGTGCAATCAGGGGTA-TCAAAGTACAAACATAGGC
1 GGGTACCAAAATATAAATAGGGGCACATATGTGCAATCAGGGGTACT-AAAGTACAAACAGAGGC
* * *
42450011 ATGTATGTGCAATTAA
65 ACGTATGCGCAATCAA
*
42450027 GGGTACCAAAATATAAATAGGGGCACATATGTACAATCA
1 GGGTACCAAAATATAAATAGGGGCACATATGTGCAATCA
42450066 TCAATAATTA
Statistics
Matches: 94, Mismatches: 23, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
79 1 0.01
80 93 0.99
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (80 bp):
GGGTACCAAAATATAAATAGGGGCACATATGTGCAATCAGGGGTACTAAAGTACAAACAGAGGCA
CGTATGCGCAATCAA
Found at i:42451420 original size:55 final size:52
Alignment explanation
Indices: 42451332--42451587 Score: 179
Period size: 55 Copynumber: 4.9 Consensus size: 52
42451322 CATTAGGGTT
*
42451332 TAAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAA
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGGTAA-GTTTCTAA
* * * * * *
42451385 GGTAAGGAAATCATGTAAGACCATGTCAAGACATGG-CATTGATAAGTTACT-A
1 --TAAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGTTTCTAA
* * ** * *
42451437 TAAGGCAAAGGTCCCATGTAAGACCATGCCAAGGCAT-GTCATTAGTGAG-TTCATAA
1 TAAGG---A--TACCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGTTTC-TAA
* *
42451493 GGCAAGGATACCATAG-AAGACCATGTCAAGACATGGAAA-TGGTAAGTTTC-AA
1 --TAAGGATACCAT-GTAAGACCATGCCAAGACATGGAAATTGGTAAGTTTCTAA
* * *
42451545 -AAGGATACCACGTAAGACCATGACAAGTCATGGAAA-TGGTAAG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGGTAAG
42451588 GTACCCGCGT
Statistics
Matches: 160, Mismatches: 27, Indels: 34
0.72 0.12 0.15
Matches are distributed among these distances:
48 1 0.01
49 38 0.24
50 5 0.03
52 3 0.02
53 32 0.20
54 16 0.10
55 60 0.38
56 1 0.01
58 4 0.03
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (52 bp):
TAAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGTTTCTAA
Found at i:42451539 original size:108 final size:110
Alignment explanation
Indices: 42451340--42451540 Score: 266
Period size: 108 Copynumber: 1.8 Consensus size: 110
42451330 TTTAAGGATA
* * *
42451340 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGTAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTAGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
42451405 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
** * *
42451450 CCATGTAAGACCATGCCAAGGCAT-GTCATTAGTGA-G-TTCATAAGGCAAGGATACCATAG-AA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTAGTAAGGTTTC-TAAGGCAAGGAAACCAT-GTAA
*
42451511 GACCATGTCAAGACATGGAAATGGTAAGTT
64 GACCATGTCAAGACATGGAAATGATAAGTT
42451541 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
107 3 0.04
108 44 0.56
109 8 0.10
110 24 0.30
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTAGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:42451800 original size:16 final size:16
Alignment explanation
Indices: 42451779--42451809 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
42451769 ATAAATTTGA
42451779 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
42451795 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
42451810 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:42455503 original size:23 final size:24
Alignment explanation
Indices: 42455455--42455504 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
42455445 TTTTAGTTGC
*
42455455 TTTATTGTTATTTTATTAAACTTA
1 TTTATTGTTATTTTATCAAACTTA
*
42455479 TTTATT-TTATTTT-TCGAACTATA
1 TTTATTGTTATTTTATCAAACT-TA
42455502 TTT
1 TTT
42455505 TTATTTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 5 0.22
23 12 0.52
24 6 0.26
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.64
Consensus pattern (24 bp):
TTTATTGTTATTTTATCAAACTTA
Found at i:42468310 original size:25 final size:25
Alignment explanation
Indices: 42468275--42468344 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
42468265 GAGGAAGTGC
*
42468275 AAAAGGGCTTTGCCTCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
42468300 TAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
42468325 AAAAGCGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
42468345 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:42474944 original size:42 final size:42
Alignment explanation
Indices: 42474781--42474940 Score: 223
Period size: 42 Copynumber: 3.8 Consensus size: 42
42474771 ATGTTATAGT
**
42474781 ATATCGATGCCAATAGCCCAG-CTATGGTCTTACACGAATCTC
1 ATATCGATGCCAATTTCCCAGAC-ATGGTCTTACACGAATCTC
* *
42474823 ATATCGATGCCAATGTCCTAGACATGGTCTTACACGAATCTC
1 ATATCGATGCCAATTTCCCAGACATGGTCTTACACGAATCTC
* * * *
42474865 ATATCAATGCCAGTTTCCCAGACATGGTTTTACATGAATCTC
1 ATATCGATGCCAATTTCCCAGACATGGTCTTACACGAATCTC
*
42474907 ATATCGATGACAATTTCCCAGACATGGTCTTACA
1 ATATCGATGCCAATTTCCCAGACATGGTCTTACA
42474941 TGAAATCACA
Statistics
Matches: 104, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
42 103 0.99
43 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (42 bp):
ATATCGATGCCAATTTCCCAGACATGGTCTTACACGAATCTC
Found at i:42486150 original size:24 final size:25
Alignment explanation
Indices: 42486123--42486178 Score: 96
Period size: 25 Copynumber: 2.2 Consensus size: 25
42486113 GAGAATTTTC
42486123 TTTTTCA-CCTAAAAGAAAACAAAA
1 TTTTTCACCCTAAAAGAAAACAAAA
42486147 TTTTTCACCCTAAAAGAAAACAAAA
1 TTTTTCACCCTAAAAGAAAACAAAA
42486172 TTATTTC
1 TT-TTTC
42486179 TAGTTTCTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 7 0.23
25 19 0.63
26 4 0.13
ACGTcount: A:0.48, C:0.18, G:0.04, T:0.30
Consensus pattern (25 bp):
TTTTTCACCCTAAAAGAAAACAAAA
Found at i:42487502 original size:37 final size:37
Alignment explanation
Indices: 42487452--42487523 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
42487442 TAGGGACGAC
*
42487452 GACCACCTGAAAGCAATAAATAGGCTTGTTTGTCAAT
1 GACCACCTAAAAGCAATAAATAGGCTTGTTTGTCAAT
*
42487489 GACCACCTAAAAGCTATAAATAGGCTTGTTTGTCA
1 GACCACCTAAAAGCAATAAATAGGCTTGTTTGTCA
42487524 CTTGTTATGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (37 bp):
GACCACCTAAAAGCAATAAATAGGCTTGTTTGTCAAT
Found at i:42489884 original size:6 final size:6
Alignment explanation
Indices: 42489873--42490029 Score: 110
Period size: 6 Copynumber: 25.8 Consensus size: 6
42489863 AACCAAAATG
* *
42489873 AGAATC AGAATC AAAATC AGTAA-C AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGA-ATC AG-AATC
* * * * * *
42489921 AAAATT AGAATC AGAATC AGAATT AG-GTGAC GGAATC AGAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* *
42489970 AGTAA-C AGAATC AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
42490019 AGAATC AGAAT
1 AGAATC AGAAT
42490030 GTGAATGCAA
Statistics
Matches: 117, Mismatches: 20, Indels: 28
0.71 0.12 0.17
Matches are distributed among these distances:
5 9 0.08
6 97 0.83
7 8 0.07
8 3 0.03
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:42489900 original size:24 final size:24
Alignment explanation
Indices: 42489873--42490004 Score: 122
Period size: 24 Copynumber: 5.2 Consensus size: 24
42489863 AACCAAAATG
42489873 AGAATCAGAATCAAAATCAGTAAC
1 AGAATCAGAATCAAAATCAGTAAC
* *
42489897 AGAATCAGAATCAATATTAGTAAC
1 AGAATCAGAATCAAAATCAGTAAC
* * *
42489921 AAAATTAGAATCAGAATCAGAATTAGGTGAC
1 ------AGAATCAGAATCAAAATCA-GTAAC
*
42489952 GGAATCAGAATCAAAATCAGTAAC
1 AGAATCAGAATCAAAATCAGTAAC
*
42489976 AGAATCAGAATCAGAATCAG-AATC
1 AGAATCAGAATCAAAATCAGTAA-C
42490000 AGAAT
1 AGAAT
42490005 TAGGTGACAG
Statistics
Matches: 89, Mismatches: 11, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
23 2 0.02
24 50 0.56
25 16 0.18
30 17 0.19
31 4 0.04
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.20
Consensus pattern (24 bp):
AGAATCAGAATCAAAATCAGTAAC
Found at i:42489975 original size:55 final size:55
Alignment explanation
Indices: 42489866--42490025 Score: 187
Period size: 61 Copynumber: 2.8 Consensus size: 55
42489856 GAATTGGAAC
* * * * * *
42489866 CAAAATGAGAATCAGAATCAAAATCA-GTAACAGAATCAGAATCAATATTAGTAA
1 CAAAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAAAATCAGTAA
* *
42489920 CAAAATTAGAATCAGAATCAGAATTAGGTGACGGAATCAGAATCAAAATCAGTAA
1 CAAAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAAAATCAGTAA
42489975 CAGAATCAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCA
1 C---A--A-AATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCA
42490026 GAATGTGAAT
Statistics
Matches: 90, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
54 23 0.26
55 25 0.28
58 1 0.01
60 1 0.01
61 40 0.44
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (55 bp):
CAAAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAAAATCAGTAA
Found at i:42490184 original size:27 final size:26
Alignment explanation
Indices: 42490147--42490212 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
42490137 AGCATGGCTG
*
42490147 CCAGAACAGATATCATGACAGAGTCA
1 CCAGAACAGATATCATGACAGAGCCA
** *
42490173 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCATGACAGAGCCA
42490200 CCAGAATCAGATA
1 CCAGAA-CAGATA
42490213 ATGTGGCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCATGACAGAGCCA
Found at i:42490217 original size:27 final size:27
Alignment explanation
Indices: 42490165--42490220 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
42490155 GATATCATGA
* *
42490165 CAGAGTCACCAGATACAGATATTGTGG
1 CAGAGCCACCAGATACAGATAATGTGG
42490192 CAGAGCCACCAGA-ATCAGATAATGTGG
1 CAGAGCCACCAGATA-CAGATAATGTGG
42490219 CA
1 CA
42490221 AAGACACCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (27 bp):
CAGAGCCACCAGATACAGATAATGTGG
Found at i:42490228 original size:27 final size:27
Alignment explanation
Indices: 42490171--42490228 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
42490161 ATGACAGAGT
* * *
42490171 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAAGA
42490198 CACCAGA-ATCAGATAATGTGGCAAAGA
1 CACCAGATA-CAGATAATGTGGCAAAGA
42490225 CACC
1 CACC
42490229 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAAGA
Found at i:42490570 original size:27 final size:26
Alignment explanation
Indices: 42490531--42490613 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
42490521 TCGATCGGTC
* *
42490531 AACAGATATTGTGACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
42490557 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
42490584 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
42490611 AAC
1 AAC
42490614 GCTTCCTCCG
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 8 0.15
27 44 0.85
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:42490842 original size:27 final size:27
Alignment explanation
Indices: 42490812--42491061 Score: 281
Period size: 27 Copynumber: 9.3 Consensus size: 27
42490802 GGGGCAAAAT
* * * *
42490812 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
42490839 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
42490866 GG-AATTTTTACCCTACAAGGGTATTTC
1 GGTAA-TTCTACCCTACAAGGGTATTTC
* *
42490893 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
42490920 GG-AATTTTTACCCTACAAGGGTATTTC
1 GGTAA-TTCTACCCTACAAGGGTATTTC
* * *
42490947 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
42490974 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
42491001 AGTAATTCTACCCTA-TAGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
* *
42491028 GGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
42491055 AGTAATT
1 GGTAATT
42491062 TCACAATCAA
Statistics
Matches: 186, Mismatches: 31, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
26 6 0.03
27 175 0.94
28 5 0.03
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:42490859 original size:54 final size:54
Alignment explanation
Indices: 42490817--42491054 Score: 327
Period size: 54 Copynumber: 4.4 Consensus size: 54
42490807 AAAATGGTAA
* * * *
42490817 TTTTACCCCACAAAGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGAAT
1 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGAAT
42490871 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGAAT
1 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGAAT
*
42490925 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTGGTAA-
1 TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGG-AAT
* * * * * *
42490979 TTCTATCCTATAAGGGTATTTC-AGTAATTCTACCCTATAGAGGTATTTCGGAAA
1 TTTTACCCTACAAGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTCGGAAT
* *
42491033 TTCTACCCTACAGGGGTATTTC
1 TTTTACCCTACAAGGGTATTTC
42491055 AGTAATTTCA
Statistics
Matches: 167, Mismatches: 14, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
53 3 0.02
54 162 0.97
55 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (54 bp):
TTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGAAT
Found at i:42491210 original size:108 final size:108
Alignment explanation
Indices: 42491056--42491535 Score: 634
Period size: 108 Copynumber: 4.5 Consensus size: 108
42491046 GGGTATTTCA
* * * *
42491056 GTAATTTCAC-AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA-CGATAATTTTGT
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAG-TAATTCTGT
*
42491119 AAACTGAAGGT-AAACTAGTAATTCTGTAAATCAAGGGTAAAACG
65 AAACTGAAGGTAAAAC-AGTAATTCTGTAAATCGAGGGTAAAACG
* * * *
42491163 GTAATTTTACAAATCGAGGGTAAAACAGCAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTA
* * *
42491228 AACTGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAACG
66 AACTGAAGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
* *
42491271 GTAATTTTCCAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATA
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTA
* *
42491336 AATTGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
66 AACTGAAGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
* *
42491379 GTAATTCTGTA-AACT-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATT-T-
1 GTAATT-T-TACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTG
* * *
42491440 TAAAAATCAAGAGTAAAAC-GATAATTCTATAAATCGAGGGTAAAACG
64 T-AAACTGAAG-GTAAAACAG-TAATTCTGTAAATCGAGGGTAAAACG
* *
42491487 ATAATTTTACAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
42491536 CTTTGGTAAT
Statistics
Matches: 332, Mismatches: 31, Indels: 19
0.87 0.08 0.05
Matches are distributed among these distances:
106 3 0.01
107 21 0.06
108 298 0.90
109 9 0.03
110 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.27
Consensus pattern (108 bp):
GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTA
AACTGAAGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:42491546 original size:27 final size:27
Alignment explanation
Indices: 42491066--42491535 Score: 534
Period size: 27 Copynumber: 17.4 Consensus size: 27
42491056 GTAATTTCAC
*
42491066 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
42491093 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
42491120 AA-CTGAAGGT-AAACTAGTAATTCTGTA
1 AATC-GAGGGTAAAAC-GGTAATTCTATA
* * *
42491147 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
42491174 AATCGAGGGTAAAACAGCAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
42491201 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
42491228 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* * **
42491255 AATTGAGGGTAAAACGGTAATTTTCCA
1 AATCGAGGGTAAAACGGTAATTCTATA
42491282 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
**
42491309 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
42491336 AATTGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
42491363 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
42491390 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
** * *
42491417 AATCGAGGGTAAAATAGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
42491444 AATCAAGAGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
42491471 AATCGAGGGTAAAACGATAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
42491498 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
42491525 AATCGAGGGTA
1 AATCGAGGGTA
42491536 CTTTGGTAAT
Statistics
Matches: 378, Mismatches: 57, Indels: 16
0.84 0.13 0.04
Matches are distributed among these distances:
26 7 0.02
27 365 0.97
28 6 0.02
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:42493564 original size:6 final size:6
Alignment explanation
Indices: 42493553--42493684 Score: 121
Period size: 6 Copynumber: 21.8 Consensus size: 6
42493543 AACCAAAATG
* *
42493553 AGAATC AGAATC AAAATC AGTAA-C AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGA-ATC AG-AATC
* * * *
42493601 AGAATT AGAATC AGGATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
42493650 AGTAA-C AGAATC AGAATC AGAATC AGAATC AGAAT
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT
42493685 TAGGTGACAT
Statistics
Matches: 103, Mismatches: 12, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
5 8 0.08
6 86 0.83
7 7 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:42493665 original size:61 final size:61
Alignment explanation
Indices: 42493576--42493709 Score: 198
Period size: 61 Copynumber: 2.2 Consensus size: 61
42493566 AAATCAGTAA
** * *
42493576 CAGAATCAGAATCAATATTAGTAACAGAATTAGAATCAGGATCAGAATTAGGTGACAGAAT
1 CAGAATCAGAATCAATAACAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAAT
* *
42493637 CAGAATCAGAATCAGTAACAG-AATCAGAATCAGAATCAGAATCAGAATTAGGTGACATAAT
1 CAGAATCAGAATCAATAACAGTAA-CAGAATCAGAATCAGAATCAGAATTAGGTGACAGAAT
42493698 CAGAATCAGAAT
1 CAGAATCAGAAT
42493710 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
60 2 0.03
61 64 0.97
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (61 bp):
CAGAATCAGAATCAATAACAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAAT
Found at i:42493864 original size:27 final size:26
Alignment explanation
Indices: 42493827--42493892 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
42493817 AGCATGGCTG
**
42493827 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAACCA
* *
42493853 CCAGATACAGATATTGTGGCAGAACCA
1 CCAGA-ACAGATATCGTGACAGAACCA
42493880 CCAGAATCAGATA
1 CCAGAA-CAGATA
42493893 ATGTGGCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAACCA
Found at i:42493897 original size:27 final size:27
Alignment explanation
Indices: 42493851--42493908 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 27
42493841 GTGACAGAGT
*
42493851 CACCAGATACAGATATTGTGGCAGAA-C
1 CACCAGATACAGATAATGTGGCA-AAGC
42493878 CACCAGA-ATCAGATAATGTGGCAAAGC
1 CACCAGATA-CAGATAATGTGGCAAAGC
42493905 CACC
1 CACC
42493909 TAACAGAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 3 0.11
27 25 0.89
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAAGC
Found at i:42494113 original size:22 final size:22
Alignment explanation
Indices: 42494065--42494123 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
42494055 GTAAATACGT
*
42494065 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
42494087 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
42494109 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
42494124 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:42494250 original size:27 final size:26
Alignment explanation
Indices: 42494211--42494293 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
42494201 TCGATCGGTC
* *
42494211 AACAGATATTGTGATAGAGTCACCAG
1 AACAGATATTGTGACAGAGCCACCAG
*
42494237 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGACAGAGCCACCAG
* * *
42494264 AACAGATATTTGCGGCATAGCCACCAG
1 AACAGATA-TTGTGACAGAGCCACCAG
42494291 AAC
1 AAC
42494294 GCTTCCTCCT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGACAGAGCCACCAG
Found at i:42494541 original size:27 final size:27
Alignment explanation
Indices: 42494511--42494741 Score: 300
Period size: 27 Copynumber: 8.6 Consensus size: 27
42494501 ACCCCATAAA
*
42494511 GGTATCTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
42494538 GGTATTTCGATATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
42494565 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
42494592 GGTATTTCGATATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
42494619 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * * *
42494646 GGTATTTTGGTAATTCTATCCTAGAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
42494673 GGTATTTCAGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
42494700 GGTATTTCAGAAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
42494727 GGTATTTCAGTAATT
1 GGTATTTCGGTAATT
42494742 TCACAATCAA
Statistics
Matches: 181, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 181 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:42494889 original size:108 final size:109
Alignment explanation
Indices: 42494734--42495187 Score: 552
Period size: 108 Copynumber: 4.2 Consensus size: 109
42494724 AGGGGTATTT
* * * * *
42494734 CAGTAATTTCAC-AATCAAGGGTAAAACGATAATTCTCTAAATCGAGGGTAAAACGA-TAATTTT
1 CAGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGAGTAATTCT
* * *
42494797 GTAAACTGAGGGTAAACTAGTAATTCTGTAAATCAAGGGTGAAA
66 GTAAACTGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAA
* *
42494841 CGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-TAGTAATTCT
1 CAGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGAGTAATTCT
* * *
42494905 GTAAACTGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAA
66 GTAAACTGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAA
* *
42494949 TAGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC-AGTAATTCT
1 CAGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGAGTAATTCT
*
42495013 GTAAGCTGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAA
66 GTAAACTGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAA
* *
42495057 CAGTAATTCTGTA-AACT-GAGGGTAAAACGTTAATTCTGTAAATCGAGGGTAAAACG-GTAATT
1 CAGTAATT-T-TACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGAGTAATT
* ** *
42495119 -T-TAAAAATCGAGGGTAAAACGGTAATT-T-TAAAATTGAGGGTAAAA
64 CTGT-AAACT-GAGGGTAAAATAGTAATTCTGT-AAATCGAGGGTAAAA
** * *
42495164 TGGTAATTCTATAAATCGAGGGTA
1 CAGTAATTTTACAAATCGAGGGTA
42495188 CTTTGGTAAT
Statistics
Matches: 303, Mismatches: 33, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
105 2 0.01
106 5 0.02
107 43 0.14
108 247 0.82
109 4 0.01
110 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (109 bp):
CAGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGAGTAATTCT
GTAAACTGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:42495198 original size:27 final size:27
Alignment explanation
Indices: 42494746--42495187 Score: 464
Period size: 27 Copynumber: 16.4 Consensus size: 27
42494736 GTAATTTCAC
* * *
42494746 AATCAAGGGTAAAACGATAATTCTCTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
42494773 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
42494800 AA-CTGAGGGT-AAACTAGTAATTCTGTA
1 AATC-GAGGGTAAAAC-GGTAATTCTATA
* * * *
42494827 AATCAAGGGTGAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
42494854 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
** *
42494881 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
42494908 AA-CTGAGGGTAAAATGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* ** * *
42494935 AATTGAGGGTAAAATAGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
42494962 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
42494989 AATCGAGGGTAAAACAGTAATTCTGT-
1 AATCGAGGGTAAAACGGTAATTCTATA
* ** *
42495015 AAGCTGAGGGTAAAATAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* *
42495043 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
42495070 AA-CTGAGGGTAAAACGTTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* *
42495097 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
42495124 AATCGAGGGTAAAACGGTAATTTTA-A
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
42495150 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
42495177 AATCGAGGGTA
1 AATCGAGGGTA
42495188 CTTTGGTAAT
Statistics
Matches: 359, Mismatches: 45, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
26 33 0.09
27 317 0.88
28 9 0.03
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:42498572 original size:34 final size:34
Alignment explanation
Indices: 42498529--42498596 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
42498519 CATGTATGAC
42498529 ATAAAGTTTTGGAGGTCTAAGTAACCCAACCATT
1 ATAAAGTTTTGGAGGTCTAAGTAACCCAACCATT
42498563 ATAAAGTTTTGGAGGTCTAAGTAACCCAACCATT
1 ATAAAGTTTTGGAGGTCTAAGTAACCCAACCATT
42498597 GTCTAATTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (34 bp):
ATAAAGTTTTGGAGGTCTAAGTAACCCAACCATT
Found at i:42505451 original size:13 final size:13
Alignment explanation
Indices: 42505433--42505460 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
42505423 GCTCGACAGG
42505433 GACATGCCCGTGT
1 GACATGCCCGTGT
42505446 GACATGCCCGTGT
1 GACATGCCCGTGT
42505459 GA
1 GA
42505461 GATGGCTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.21
Consensus pattern (13 bp):
GACATGCCCGTGT
Found at i:42511809 original size:30 final size:30
Alignment explanation
Indices: 42511773--42511835 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
42511763 TATAGAGGAG
42511773 ATGTCACTGAATAACTATCAGTGGCAAGTC
1 ATGTCACTGAATAACTATCAGTGGCAAGTC
*
42511803 ATGTCACTGAATAACTATTAGTGGCAAGTC
1 ATGTCACTGAATAACTATCAGTGGCAAGTC
42511833 ATG
1 ATG
42511836 AGGACAAAGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (30 bp):
ATGTCACTGAATAACTATCAGTGGCAAGTC
Found at i:42550141 original size:42 final size:42
Alignment explanation
Indices: 42550062--42550143 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
42550052 GATGCAGGAG
*
42550062 ACACACGGTCAAGACACACGCCCATGTGCTAGGCCGTGTGTC
1 ACACACGGTCAAGACACACGCCCATGTGCTAGCCCGTGTGTC
* *
42550104 ACACACGG-CTAAGACACACGCCCGTGTCTCTA-CCCGTGTG
1 ACACACGGTC-AAGACACACGCCCATGT-GCTAGCCCGTGTG
42550144 GACGAAAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
41 1 0.03
42 31 0.89
43 3 0.09
ACGTcount: A:0.23, C:0.35, G:0.24, T:0.17
Consensus pattern (42 bp):
ACACACGGTCAAGACACACGCCCATGTGCTAGCCCGTGTGTC
Found at i:42551605 original size:21 final size:21
Alignment explanation
Indices: 42551581--42551620 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
42551571 GTAAATTTAG
*
42551581 CTCAATTTAATACAATTCATA
1 CTCAATTCAATACAATTCATA
*
42551602 CTCAATTCAATCCAATTCA
1 CTCAATTCAATACAATTCA
42551621 CATTTTAGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.25, G:0.00, T:0.35
Consensus pattern (21 bp):
CTCAATTCAATACAATTCATA
Found at i:42561355 original size:16 final size:17
Alignment explanation
Indices: 42561329--42561372 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
42561319 TTAAAATGAT
42561329 AAATTTT-TAATTTA-A
1 AAATTTTATAATTTATA
*
42561344 AATTTTTATAATTTATA
1 AAATTTTATAATTTATA
42561361 AAATTTTA-AATT
1 AAATTTTATAATT
42561373 AGTAATGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 6 0.24
16 11 0.44
17 8 0.32
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
AAATTTTATAATTTATA
Found at i:42564226 original size:50 final size:49
Alignment explanation
Indices: 42564061--42564291 Score: 257
Period size: 50 Copynumber: 4.7 Consensus size: 49
42564051 TCTATCGTGA
*
42564061 GGTCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
* * * ** * * * *
42564110 GGCCGCATGTGT-GTACTAAGTACAGACTACTATGCGTACCCGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAA-TT
* * * * **
42564159 CGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
*
42564209 AGGTCACGTGTGTAGTACTAAGTGTAGACTACTACGTGTACCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
* *
42564259 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTA
1 GGTCACGTGTGTAGTACTAAGTGTAGGCTACTA
42564292 TGCATACCAG
Statistics
Matches: 145, Mismatches: 34, Indels: 6
0.78 0.18 0.03
Matches are distributed among these distances:
48 28 0.19
49 40 0.28
50 52 0.36
51 25 0.17
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
Found at i:42564303 original size:99 final size:99
Alignment explanation
Indices: 42564068--42564291 Score: 272
Period size: 99 Copynumber: 2.3 Consensus size: 99
42564058 TGAGGTCATG
* *
42564068 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGCCGCATGTGTGTACTAAGTAC
1 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGCCACATGTGTGTACTAAGTAC
* *
42564133 AGACTACTATGCGTACCCGATAACTTCGATCACG
66 AGACTACTACGCGTACCCGATAACTTCGATCACA
* * ** * *
42564167 TGTGTAGTACTAAGTGAAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT-GGCCACATGTGT-GTACTAAGT
** * * * *
42564232 GTAGACTACTACGTGTACCGGATAA-TT-GGTCGCA
64 ACAGACTACTACGCGTACCCGATAACTTCGATCACA
42564266 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGTAGGCTACTA
42564292 TGCATACCAG
Statistics
Matches: 106, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
99 66 0.62
100 11 0.10
101 29 0.27
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (99 bp):
TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGCCACATGTGTGTACTAAGTAC
AGACTACTACGCGTACCCGATAACTTCGATCACA
Found at i:42567803 original size:31 final size:31
Alignment explanation
Indices: 42567767--42567833 Score: 134
Period size: 31 Copynumber: 2.2 Consensus size: 31
42567757 CTACCTTTAC
42567767 CTCGACCTAGAGCTTTTCTTCAACACTCTTT
1 CTCGACCTAGAGCTTTTCTTCAACACTCTTT
42567798 CTCGACCTAGAGCTTTTCTTCAACACTCTTT
1 CTCGACCTAGAGCTTTTCTTCAACACTCTTT
42567829 CTCGA
1 CTCGA
42567834 TCCAGCAACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.19, C:0.33, G:0.10, T:0.37
Consensus pattern (31 bp):
CTCGACCTAGAGCTTTTCTTCAACACTCTTT
Found at i:42575129 original size:29 final size:29
Alignment explanation
Indices: 42575087--42575167 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 29
42575077 GAAGAGGTGG
42575087 AGAACTTGTTCGTTGAGAGTTCGCAATAA
1 AGAACTTGTTCGTTGAGAGTTCGCAATAA
* * *
42575116 AGAACTCGTTCGTTGAGAGTTCGCGATGA
1 AGAACTTGTTCGTTGAGAGTTCGCAATAA
* *
42575145 AGAACTTGTTCATTGAGAATTCG
1 AGAACTTGTTCGTTGAGAGTTCG
42575168 TGTCAAGGTG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (29 bp):
AGAACTTGTTCGTTGAGAGTTCGCAATAA
Found at i:42577346 original size:18 final size:18
Alignment explanation
Indices: 42577323--42577363 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
42577313 TAACAACAAT
42577323 AACTTGCATACAATTTAA
1 AACTTGCATACAATTTAA
42577341 AACTTGCATACAATTTAA
1 AACTTGCATACAATTTAA
42577359 AACTT
1 AACTT
42577364 TCATGCATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.44, C:0.17, G:0.05, T:0.34
Consensus pattern (18 bp):
AACTTGCATACAATTTAA
Found at i:42577662 original size:19 final size:19
Alignment explanation
Indices: 42577615--42577654 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
42577605 CGTGTGTCCA
*
42577615 GCCCGTGTGCCTTGCACAC
1 GCCCGTGTCCCTTGCACAC
42577634 GCCCGTGTCCCTTGCACAC
1 GCCCGTGTCCCTTGCACAC
42577653 GC
1 GC
42577655 TCCTGTCCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.10, C:0.45, G:0.25, T:0.20
Consensus pattern (19 bp):
GCCCGTGTCCCTTGCACAC
Done.