Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 155 of 167
Found at i:51064411 original size:11 final size:12
Alignment explanation
Indices: 51064348--51064412 Score: 68
Period size: 11 Copynumber: 5.8 Consensus size: 12
51064338 AATTAATCCT
*
51064348 CTCTCAATTTTC
1 CTCTCAAATTTC
51064360 CTCTC-AATTTC
1 CTCTCAAATTTC
*
51064371 CTCTC-AATTTG
1 CTCTCAAATTTC
51064382 CTCTCAAA-TTC
1 CTCTCAAATTTC
51064393 CT-TCCAAATTT-
1 CTCT-CAAATTTC
51064404 CTCTCAAAT
1 CTCTCAAAT
51064413 CCATATTTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
10 1 0.02
11 35 0.76
12 10 0.22
ACGTcount: A:0.23, C:0.32, G:0.02, T:0.43
Consensus pattern (12 bp):
CTCTCAAATTTC
Found at i:51065308 original size:6 final size:6
Alignment explanation
Indices: 51065297--51065321 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
51065287 TTCTTCAACT
51065297 AAGCCC AAGCCC AAGCCC AAGCCC A
1 AAGCCC AAGCCC AAGCCC AAGCCC A
51065322 TATCCAATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.48, G:0.16, T:0.00
Consensus pattern (6 bp):
AAGCCC
Found at i:51068543 original size:29 final size:31
Alignment explanation
Indices: 51068478--51068545 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
51068468 AATATCAAAA
51068478 TTATACATGAACTTTGATCTAATGTGCAATG
1 TTATACATGAACTTTGATCTAATGTGCAATG
* * *
51068509 TCATACATGAACTTTGAT-T-TTGTGCAATT
1 TTATACATGAACTTTGATCTAATGTGCAATG
51068538 TTATACAT
1 TTATACAT
51068546 AAAGTTTTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 15 0.45
30 1 0.03
31 17 0.52
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.43
Consensus pattern (31 bp):
TTATACATGAACTTTGATCTAATGTGCAATG
Found at i:51072264 original size:21 final size:21
Alignment explanation
Indices: 51072240--51072279 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
51072230 AAAGAAAAAA
*
51072240 TATTTT-TGTAATAATATTTAT
1 TATTTTCT-TAATAAAATTTAT
51072261 TATTTTCTTAATAAAATTT
1 TATTTTCTTAATAAAATTT
51072280 TTTAGTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.60
Consensus pattern (21 bp):
TATTTTCTTAATAAAATTTAT
Found at i:51073496 original size:16 final size:18
Alignment explanation
Indices: 51073459--51073502 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
51073449 ACTAAAATTT
*
51073459 AAATTATATATATATATC
1 AAATTATATATATATATA
51073477 AAATTATATATATA-A-A
1 AAATTATATATATATATA
*
51073493 AAATTCTATA
1 AAATTATATA
51073503 CTTTTAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 9 0.38
17 1 0.04
18 14 0.58
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (18 bp):
AAATTATATATATATATA
Found at i:51075440 original size:26 final size:26
Alignment explanation
Indices: 51075411--51075470 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
51075401 TTTAACCCAT
*
51075411 TTAAAAATTATAAAACATTCA-AAAAA
1 TTAAAAA-TATAAAAAATTCATAAAAA
*
51075437 TTAAATAATATAAAAAATTTATAAAAA
1 TTAAA-AATATAAAAAATTCATAAAAA
51075464 TTAAAAA
1 TTAAAAA
51075471 GAAGCATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 18 0.60
27 12 0.40
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (26 bp):
TTAAAAATATAAAAAATTCATAAAAA
Found at i:51075469 original size:17 final size:17
Alignment explanation
Indices: 51075411--51075470 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 17
51075401 TTTAACCCAT
51075411 TTAAAAATTATAAAACA
1 TTAAAAATTATAAAACA
*
51075428 TTCAAAAAATTA-AATAATA
1 TT--AAAAATTATAA-AACA
*
51075447 TAAAAAATTTATAAAA-A
1 TTAAAAA-TTATAAAACA
51075464 TTAAAAA
1 TTAAAAA
51075471 GAAGCATAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
17 14 0.40
18 7 0.20
19 14 0.40
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (17 bp):
TTAAAAATTATAAAACA
Found at i:51075804 original size:25 final size:25
Alignment explanation
Indices: 51075776--51075826 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
51075766 ATAGAAAGAT
*
51075776 AATGTGCTTCAGCTTATTCAAACCC
1 AATGCGCTTCAGCTTATTCAAACCC
51075801 AATGCGCTTCAGCTTATTCAAACCC
1 AATGCGCTTCAGCTTATTCAAACCC
51075826 A
1 A
51075827 TATCCTTCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (25 bp):
AATGCGCTTCAGCTTATTCAAACCC
Found at i:51080070 original size:13 final size:13
Alignment explanation
Indices: 51080054--51080080 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51080044 AAATAAAAAA
51080054 ATATTTATTATAT
1 ATATTTATTATAT
51080067 ATATTTATTATAT
1 ATATTTATTATAT
51080080 A
1 A
51080081 AATACTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
ATATTTATTATAT
Found at i:51087104 original size:24 final size:24
Alignment explanation
Indices: 51087068--51087121 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
51087058 CAAAACTTGC
51087068 AAACA-TGACAAAATG-ATAGAAGA
1 AAACAGTGACAAAA-GAATAGAAGA
* *
51087091 AAACAGTGGCAAAAGAATAGTAGA
1 AAACAGTGACAAAAGAATAGAAGA
*
51087115 ATACAGT
1 AAACAGT
51087122 AAAAAAAACA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 6 0.23
24 20 0.77
ACGTcount: A:0.56, C:0.09, G:0.20, T:0.15
Consensus pattern (24 bp):
AAACAGTGACAAAAGAATAGAAGA
Found at i:51088165 original size:32 final size:31
Alignment explanation
Indices: 51088127--51088188 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 31
51088117 CATTTTCTTT
51088127 ATTATTTTA-ATATATTATCATTTATTATTATC
1 ATTATTTTATA-ATATTATCATTTA-TATTATC
* *
51088159 ATTATTTTATAATATTGTTATTTATATTAT
1 ATTATTTTATAATATTATCATTTATATTAT
51088189 TCATCATACT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 6 0.22
32 20 0.74
33 1 0.04
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (31 bp):
ATTATTTTATAATATTATCATTTATATTATC
Found at i:51099549 original size:108 final size:108
Alignment explanation
Indices: 51099366--51099564 Score: 290
Period size: 108 Copynumber: 1.8 Consensus size: 108
51099356 TTCATTTTAT
* * * * *
51099366 ATCTTAGCAAAATTTGCTATTTTGACTAATTTTTTCATTTCGAGCTTTGTTATCAGTAAAATTTC
1 ATCTTAGCAAAATTTGCTATTTTGACTAATTTATTCATTTCGAGCCTTATTATCAATAAAATTCC
51099431 ATCTTATCCATTGTGATAATCCTTTTAATCTTATTCATTCTGA
66 ATCTTATCCATTGTGATAATCCTTTTAATCTTATTCATTCTGA
* * * *
51099474 ATCTTAGCAAAATTTGCTATTTTGATTAATTTATTCATTTTGAGCCTTATTCTCAATTAAATTCC
1 ATCTTAGCAAAATTTGCTATTTTGACTAATTTATTCATTTCGAGCCTTATTATCAATAAAATTCC
* * *
51099539 ATCTTGTCCATTTTGATAATCTTTTT
66 ATCTTATCCATTGTGATAATCCTTTT
51099565 CAAGATGGAC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
108 79 1.00
ACGTcount: A:0.27, C:0.16, G:0.09, T:0.49
Consensus pattern (108 bp):
ATCTTAGCAAAATTTGCTATTTTGACTAATTTATTCATTTCGAGCCTTATTATCAATAAAATTCC
ATCTTATCCATTGTGATAATCCTTTTAATCTTATTCATTCTGA
Found at i:51100417 original size:43 final size:43
Alignment explanation
Indices: 51100363--51101127 Score: 558
Period size: 43 Copynumber: 17.7 Consensus size: 43
51100353 TTATCAAGTT
*
51100363 TTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
1 TTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
* * * * * *****
51100406 CTATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAGATGGTAGAT-
1 TTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAG-TC
* ** ** * *
51100449 TCTATCTCCCTAAGCAGTAGTAGGAGCAGATCGAAGACGGCGAATC
1 T-TATCTCCCTAAGCAGTAGT-GAAGCAGATTTAAG-CCACCAGTC
* *
51100495 TTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAATC
1 TTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
* *
51100538 TTATTTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
1 TTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
* *
51100581 TTATCTTCTTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
1 TTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
* * * * * ** *****
51100624 CTATCTCCCTAAGTAGTAGTGGAGTAGGTCAAAGATGGTAGAT-
1 TTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAG-TC
* ** * * *
51100667 TCTATCTCCTTAAGCAGTAGTAGGAA-CAGATCGAAGACGACGAATC
1 T-TATCTCCCTAAGCAGTAGT--GAAGCAGATTTAAG-CCACCAGTC
* * * *
51100713 TTATCTTCCTAAG-AGTAATGAAGCAGATTTAAGCTACCAATC
1 TTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
* * *
51100755 TTATCTTCCTAAGCAGTAGTGAAGTAGATTTAAGCCACCAATC
1 TTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
*
51100798 TTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
1 TTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
* * * * ** *****
51100841 ATATCTCCCTAAGCAGTAGTGGAGTAGGTCAAAGATGGTAGAT-
1 TTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAG-TC
* ** * * *
51100884 TCTATCTCCCTAAGCAGTAGTAGGAGCAGATCGAAGACAGCGAATC
1 T-TATCTCCCTAAGCAGTAGT-GAAGCAGATTTAAGCCA-CCAGTC
*
51100930 TTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
1 TTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
* *
51100973 TTATGTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
1 TTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
* * * * * * * *****
51101016 CTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATC
1 TTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAG-TC
* * * *
51101060 TTATCTCCCTAAGAAGTAGTGGAGCAGA--T-CG-CATCAAGTC
1 TTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCCA-CCAGTC
51101100 TTATCTCCCTAAGCAGTAGTGAAGCAGA
1 TTATCTCCCTAAGCAGTAGTGAAGCAGA
51101128 CAGAAGAAAC
Statistics
Matches: 574, Mismatches: 128, Indels: 43
0.77 0.17 0.06
Matches are distributed among these distances:
40 28 0.05
41 3 0.01
42 23 0.04
43 322 0.56
44 111 0.19
45 78 0.14
46 9 0.02
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (43 bp):
TTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
Found at i:51100759 original size:174 final size:173
Alignment explanation
Indices: 51100363--51101001 Score: 583
Period size: 175 Copynumber: 3.7 Consensus size: 173
51100353 TTATCAAGTT
* * *
51100363 TTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTAAGCAGTAGTGG
1 TTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTCTTATCTTCCTAAGCAGTAGTGA
* * ***** * * *
51100428 AGTAGGTTAAAGATGGTAGATTCTATCTCCCTAAGCAGTAGTAGGAGCAGATCGAAGACGGCGAA
66 AGTAGATTTAAGCCACCAG-TCCTATCTCCCTAAGCAGTAGT-GGAGCAGATCAAAGACGGAGAA
**
51100493 TCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAATC
129 TCTTATCTTCCTAAGCAGTAGTGAAGCAGATCGAAGCCACCAATC
* *
51100538 TTATTTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTCTTATCTTCTTAAGCAGTAGTGA
1 TTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTCTTATCTTCCTAAGCAGTAGTGA
* * * * * *
51100603 AGCAGATTTAAGCCACCAGTCCTATCTCCCTAAGTAGTAGTGGAGTAGGTCAAAGATGGTAGATT
66 AGTAGATTTAAGCCACCAGTCCTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGG-AGAAT
* *
51100668 C-TATC-TCCTTAAGCAGTAGTAGGAA-CAGATCGAAGACGACGAATC
130 CTTATCTTCC-TAAGCAGTAGT--GAAGCAGATCGAAG-CCACCAATC
* * *
51100713 TTATCTTCCTAAG-AGTAATGAAGCAGATTTAAGCTACCAATCTTATCTTCCTAAGCAGTAGTGA
1 TTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTCTTATCTTCCTAAGCAGTAGTGA
* * * * ** *
51100777 AGTAGATTTAAGCCACCAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCAC-CAG--
66 AGTAGATTTAAGCCACCAGTCCTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAG--ACGGAGAA
* * * * * * *****
51100839 TCATATCTCCCTAAGCAGTAGTGGAGTAGGTCAAAGATGGTAGAT-
129 TCTTATCTTCCTAAGCAGTAGTGAAGCAGATCGAAGCCACCA-ATC
* * ** * * *
51100884 TCTATCTCCCTAAGCAGTAGTAGGAGCAGATCGAAGACAGCGAATCTTATCTTCCTAAGCAGTAG
1 T-TATCTTCCTAAGCAGTAGT-GAAGCAGATTTAAGCCA-CCAGTCTTATCTTCCTAAGCAGTAG
* * * * *
51100949 TGAAGCAGATTTAAGCCACCAGTCTTATGTTCCTAAGCAGTAGTGAAGCAGAT
63 TGAAGTAGATTTAAGCCACCAGTCCTATCTCCCTAAGCAGTAGTGGAGCAGAT
51101002 TTAAGCCACC
Statistics
Matches: 386, Mismatches: 63, Indels: 30
0.81 0.13 0.06
Matches are distributed among these distances:
171 4 0.01
172 25 0.06
173 49 0.13
174 140 0.36
175 167 0.43
176 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (173 bp):
TTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTCTTATCTTCCTAAGCAGTAGTGA
AGTAGATTTAAGCCACCAGTCCTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGAGAATC
TTATCTTCCTAAGCAGTAGTGAAGCAGATCGAAGCCACCAATC
Found at i:51100994 original size:175 final size:169
Alignment explanation
Indices: 51100750--51101127 Score: 569
Period size: 175 Copynumber: 2.2 Consensus size: 169
51100740 TTTAAGCTAC
*
51100750 CAATCTTATCTTCCTAAGCAGTAGTGAAGTAGATTTAAGCCACCAATCTTATCTTCCTAAGCAGT
1 CAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAATCTTATCTTCCTAAGCAGT
*
51100815 AGTGAAGCAGATTTAAGCCACCAGTCATATCTCCCTAAGCAGTAGTGGAGTAGGTCAAAGATGGT
66 AGTGAAGCAGATTTAAGCCACCAGTCATATCTCCCTAAGCAGCAGTGGAGTAGGTCAAAGATGGT
*
51100880 AGAT-TCTATCTCCCTAAGCAGTAGTAGGAGCAGATCGAAGACAG
131 AGATCT-TATCTCCCTAAGAAGTAGT-GGAGCAGATC---G-CAG
* *
51100924 CGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTCTTATGTTCCTAAGCAG
1 C-AATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAATCTTATCTTCCTAAGCAG
* * ** *
51100989 TAGTGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTG
65 TAGTGAAGCAGATTTAAGCCACCAGTCATATCTCCCTAAGCAGCAGTGGAGTAGGTCAAAGATGG
*
51101054 TAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGCAT
130 TAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGCAG
*
51101094 CAAGTCTTATCTCCCTAAGCAGTAGTGAAGCAGA
1 CAA-TCTTATCTTCCTAAGCAGTAGTGAAGCAGA
51101128 CAGAAGAAAC
Statistics
Matches: 189, Mismatches: 12, Indels: 10
0.90 0.06 0.05
Matches are distributed among these distances:
169 2 0.01
170 32 0.17
171 1 0.01
174 11 0.06
175 142 0.75
176 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (169 bp):
CAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAATCTTATCTTCCTAAGCAGT
AGTGAAGCAGATTTAAGCCACCAGTCATATCTCCCTAAGCAGCAGTGGAGTAGGTCAAAGATGGT
AGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGCAG
Found at i:51102784 original size:32 final size:31
Alignment explanation
Indices: 51102746--51102807 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 31
51102736 CATTTTCTTT
51102746 ATTATTTTA-ATATATTATCATTTATTATTATC
1 ATTATTTTATA-ATATTATCATTTA-TATTATC
* *
51102778 ATTATTTTATAATATTGTTATTTATATTAT
1 ATTATTTTATAATATTATCATTTATATTAT
51102808 TCATCATACT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 6 0.22
32 20 0.74
33 1 0.04
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (31 bp):
ATTATTTTATAATATTATCATTTATATTATC
Found at i:51109037 original size:31 final size:31
Alignment explanation
Indices: 51109002--51109097 Score: 88
Period size: 31 Copynumber: 3.2 Consensus size: 31
51108992 CTCAAAGTTA
51109002 TACATCAACTATGGTTTTATATGTAATTGTT
1 TACATCAACTATGGTTTTATATGTAATTGTT
* * * * * * *
51109033 TACATGAA-TTTTGATTT-GATCTAATTATT
1 TACATCAACTATGGTTTTATATGTAATTGTT
* * *
51109062 AACATCAACTATGGTTTAATATGCAATTGTT
1 TACATCAACTATGGTTTTATATGTAATTGTT
51109093 TACAT
1 TACAT
51109098 GAATTTTGAT
Statistics
Matches: 45, Mismatches: 18, Indels: 4
0.67 0.27 0.06
Matches are distributed among these distances:
29 15 0.33
30 11 0.24
31 19 0.42
ACGTcount: A:0.32, C:0.10, G:0.11, T:0.46
Consensus pattern (31 bp):
TACATCAACTATGGTTTTATATGTAATTGTT
Found at i:51109058 original size:29 final size:29
Alignment explanation
Indices: 51109025--51109118 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 29
51109015 GTTTTATATG
*
51109025 TAATTGTTTACATGAATTTTGATTTGATC
1 TAATTGTTTACATGAATTTTGATTTAATC
* * * * * * *
51109054 TAATTATTAACATCAACTATGGTTTAATA
1 TAATTGTTTACATGAATTTTGATTTAATC
*
51109083 TGCAATTGTTTACATGAATTTTGATTTTATC
1 T--AATTGTTTACATGAATTTTGATTTAATC
51109114 TAATT
1 TAATT
51109119 ATTGATATAA
Statistics
Matches: 47, Mismatches: 16, Indels: 4
0.70 0.24 0.06
Matches are distributed among these distances:
29 26 0.55
31 21 0.45
ACGTcount: A:0.32, C:0.09, G:0.11, T:0.49
Consensus pattern (29 bp):
TAATTGTTTACATGAATTTTGATTTAATC
Found at i:51109076 original size:60 final size:60
Alignment explanation
Indices: 51109003--51109121 Score: 211
Period size: 60 Copynumber: 2.0 Consensus size: 60
51108993 TCAAAGTTAT
* *
51109003 ACATCAACTATGGTTTTATATGTAATTGTTTACATGAATTTTGATTTGATCTAATTATTA
1 ACATCAACTATGGTTTAATATGCAATTGTTTACATGAATTTTGATTTGATCTAATTATTA
*
51109063 ACATCAACTATGGTTTAATATGCAATTGTTTACATGAATTTTGATTTTATCTAATTATT
1 ACATCAACTATGGTTTAATATGCAATTGTTTACATGAATTTTGATTTGATCTAATTATT
51109122 GATATAATAT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.32, C:0.09, G:0.11, T:0.48
Consensus pattern (60 bp):
ACATCAACTATGGTTTAATATGCAATTGTTTACATGAATTTTGATTTGATCTAATTATTA
Found at i:51112600 original size:45 final size:44
Alignment explanation
Indices: 51112489--51112600 Score: 118
Period size: 44 Copynumber: 2.5 Consensus size: 44
51112479 GTTTGCAAAT
* *
51112489 AAACTGCCAATGGGCTATGGATGCATAGCAAAATTCACAGATGA
1 AAACTGCCAATGGGCTATGGATGCACAACAAAATTCACAGATGA
* * * * **
51112533 GAACTGCCACTGAGCTGTGGATGCACAACAAAATTTCGTAGAT-A
1 AAACTGCCAATGGGCTATGGATGCACAACAAAA-TTCACAGATGA
*
51112577 AAATCTGCCATTGGGCTATGGATG
1 AAA-CTGCCAATGGGCTATGGATG
51112601 GACAGCATGT
Statistics
Matches: 54, Mismatches: 12, Indels: 3
0.78 0.17 0.04
Matches are distributed among these distances:
44 30 0.56
45 24 0.44
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (44 bp):
AAACTGCCAATGGGCTATGGATGCACAACAAAATTCACAGATGA
Found at i:51112874 original size:34 final size:34
Alignment explanation
Indices: 51112826--51112990 Score: 152
Period size: 34 Copynumber: 4.9 Consensus size: 34
51112816 TATCAATATG
* **
51112826 GTAGCAATTAATATGCTTGTAACAGATCAGTACA
1 GTAGCAATTAATATGCTTATAACAGATCAAAACA
* *
51112860 GTAGTAATTAATATGCTTATAATAGATCAAAACA
1 GTAGCAATTAATATGCTTATAACAGATCAAAACA
* * *
51112894 GTAACAATTAATATGCTTATAACAGATCAATA-T
1 GTAGCAATTAATATGCTTATAACAGATCAAAACA
* * * * **
51112927 GATAGCAATTTATATGCTTACAACAAATCAATATG
1 G-TAGCAATTAATATGCTTATAACAGATCAAAACA
* * * *
51112962 GTAGCAATTCATATGTTTCTAACAAATCA
1 GTAGCAATTAATATGCTTATAACAGATCA
51112991 TTAAAGTAGT
Statistics
Matches: 110, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
33 1 0.01
34 108 0.98
35 1 0.01
ACGTcount: A:0.42, C:0.13, G:0.12, T:0.32
Consensus pattern (34 bp):
GTAGCAATTAATATGCTTATAACAGATCAAAACA
Found at i:51112970 original size:68 final size:68
Alignment explanation
Indices: 51112817--51112999 Score: 188
Period size: 68 Copynumber: 2.7 Consensus size: 68
51112807 ACATGCACAT
* * * *
51112817 ATCAATATGGTAGCAATTAATATGCTTGTAACAGATCAGTACAGTAGTAATTAATATGCTTATAA
1 ATCAATATGGTAGCAATTAATATGCTTATAACAGATCAATACAGTAGCAATTAATATGCTTACAA
* *
51112882 TAG
66 CAA
* ** * * *
51112885 ATCAAAACAGTAACAATTAATATGCTTATAACAGATCAATA-TGATAGCAATTTATATGCTTACA
1 ATCAATATGGTAGCAATTAATATGCTTATAACAGATCAATACAG-TAGCAATTAATATGCTTACA
51112949 ACAA
65 ACAA
* * * * * *
51112953 ATCAATATGGTAGCAATTCATATGTTTCTAACAAATCATTAAAGTAG
1 ATCAATATGGTAGCAATTAATATGCTTATAACAGATCAATACAGTAG
51113000 TAAAAGACAT
Statistics
Matches: 91, Mismatches: 22, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
67 1 0.01
68 89 0.98
69 1 0.01
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.32
Consensus pattern (68 bp):
ATCAATATGGTAGCAATTAATATGCTTATAACAGATCAATACAGTAGCAATTAATATGCTTACAA
CAA
Found at i:51118061 original size:17 final size:19
Alignment explanation
Indices: 51118039--51118077 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
51118029 CGAAATCAAC
*
51118039 AAAATA-AT-TATATTTTA
1 AAAATAGATATATATTCTA
51118056 AAAATAGATATATATTCTA
1 AAAATAGATATATATTCTA
51118075 AAA
1 AAA
51118078 TTAAATGCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 2 0.11
19 11 0.58
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (19 bp):
AAAATAGATATATATTCTA
Found at i:51119696 original size:3 final size:3
Alignment explanation
Indices: 51119690--51119736 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
51119680 CCACCAAATA
51119690 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
51119737 AACCTAGCCA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:51120616 original size:25 final size:24
Alignment explanation
Indices: 51120555--51120633 Score: 77
Period size: 25 Copynumber: 3.2 Consensus size: 24
51120545 GACACACCAT
*
51120555 AGCTTGCATGAGCTTCCTGATATTC
1 AGCTTGCATGAGCTTCC-GATATAC
* * * *
51120580 AACTCGCTTGAGCTTTCCGTTATAC
1 AGCTTGCATGAGC-TTCCGATATAC
*
51120605 AGCTTGCATGAGCTTCTCGATATTC
1 AGCTTGCATGAGCTTC-CGATATAC
51120630 AGCT
1 AGCT
51120634 CTAAGGAGCT
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
24 3 0.07
25 35 0.83
26 4 0.10
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.35
Consensus pattern (24 bp):
AGCTTGCATGAGCTTCCGATATAC
Found at i:51120630 original size:50 final size:49
Alignment explanation
Indices: 51120555--51120657 Score: 136
Period size: 50 Copynumber: 2.1 Consensus size: 49
51120545 GACACACCAT
***
51120555 AGCTTGCATGAGCTTCCTGATATTCAACTCGCTTGAGCTTTCCGTTATAC
1 AGCTTGCATGAGCTTCCTGATATTCAACTCGAAGGAGCTTTCCGTT-TAC
* *
51120605 AGCTTGCATGAGCTT-CTCGATATTCAGCTCTAAGGAGCTTTCCGTTTAC
1 AGCTTGCATGAGCTTCCT-GATATTCAACTCGAAGGAGCTTTCCGTTTAC
51120654 AGCT
1 AGCT
51120658 CATATGAGCA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
49 9 0.19
50 38 0.81
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.35
Consensus pattern (49 bp):
AGCTTGCATGAGCTTCCTGATATTCAACTCGAAGGAGCTTTCCGTTTAC
Found at i:51123573 original size:12 final size:13
Alignment explanation
Indices: 51123556--51123584 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
51123546 TTTGGGACTG
51123556 AAATTTA-AAGTA
1 AAATTTAGAAGTA
51123568 AAATTTAGAAGTA
1 AAATTTAGAAGTA
51123581 AAAT
1 AAAT
51123585 AAAACGAACG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.31
Consensus pattern (13 bp):
AAATTTAGAAGTA
Found at i:51138933 original size:20 final size:22
Alignment explanation
Indices: 51138884--51138924 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
51138874 TTTAAATTTT
51138884 ATTTTATTAAAACTATTTATAA
1 ATTTTATTAAAACTATTTATAA
51138906 ATTTTATTAAAA-T-TTTATA
1 ATTTTATTAAAACTATTTATA
51138925 TTATTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.32
21 1 0.05
22 12 0.63
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (22 bp):
ATTTTATTAAAACTATTTATAA
Found at i:51143719 original size:25 final size:25
Alignment explanation
Indices: 51143680--51143727 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
51143670 GTTCCATTAT
51143680 TAGCTCTCATAAGCATCCCGATTCA
1 TAGCTCTCATAAGCATCCCGATTCA
* * *
51143705 TAGCTCTTATGAGCATCCTGATT
1 TAGCTCTCATAAGCATCCCGATT
51143728 GGTTGTGATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.33
Consensus pattern (25 bp):
TAGCTCTCATAAGCATCCCGATTCA
Found at i:51143839 original size:25 final size:25
Alignment explanation
Indices: 51143811--51143916 Score: 71
Period size: 25 Copynumber: 4.3 Consensus size: 25
51143801 TCCCGTTATA
51143811 TGGCTCTTGC-GAGC-TTCTCGATAAC
1 TGGCTCTT-CAGAGCTTTC-CGATAAC
51143836 TGGCTCTTCAGAGCTTTCCGATAAC
1 TGGCTCTTCAGAGCTTTCCGATAAC
* * *
51143861 TAGCT-TTTATAAGC-TTCCTGATTAA-
1 TGGCTCTTCA-GAGCTTTCC-GA-TAAC
* * *
51143886 TGGCTCTCCAGAGCTTCCCGAT-AT
1 TGGCTCTTCAGAGCTTTCCGATAAC
51143910 TGGCTCT
1 TGGCTCT
51143917 CTTGAACTTC
Statistics
Matches: 65, Mismatches: 8, Indels: 17
0.72 0.09 0.19
Matches are distributed among these distances:
23 1 0.02
24 16 0.25
25 37 0.57
26 11 0.17
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.35
Consensus pattern (25 bp):
TGGCTCTTCAGAGCTTTCCGATAAC
Found at i:51143963 original size:49 final size:50
Alignment explanation
Indices: 51143910--51144005 Score: 122
Period size: 49 Copynumber: 1.9 Consensus size: 50
51143900 TTCCCGATAT
* * ** *
51143910 TGGCTCTCTTGAACTTCCTGATAT-TGGCTCGCATGAGCTTCCTGTTACA
1 TGGCTCACATGAACTTCCTGATATATGGCTCAAAAGAGCTTCCTGTTACA
* *
51143959 TGGCTCACATGAGCTTCCTGTTATATGGCTCAAAAGAGCTTCCTGTT
1 TGGCTCACATGAACTTCCTGATATATGGCTCAAAAGAGCTTCCTGTT
51144006 TATGTGCTCG
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
49 20 0.51
50 19 0.49
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (50 bp):
TGGCTCACATGAACTTCCTGATATATGGCTCAAAAGAGCTTCCTGTTACA
Found at i:51144022 original size:25 final size:25
Alignment explanation
Indices: 51143872--51144014 Score: 125
Period size: 25 Copynumber: 5.8 Consensus size: 25
51143862 AGCTTTTATA
*
51143872 AGCTTCCTGATTA-ATGGCTCTCCA-G
1 AGCTTCCTG-TTATATGGCTC-ACATG
* * * *
51143897 AGCTTCCCGATAT-TGGCTCTCTTG
1 AGCTTCCTGTTATATGGCTCACATG
* * *
51143921 AACTTCCTGATAT-TGGCTCGCATG
1 AGCTTCCTGTTATATGGCTCACATG
*
51143945 AGCTTCCTGTTACATGGCTCACATG
1 AGCTTCCTGTTATATGGCTCACATG
* *
51143970 AGCTTCCTGTTATATGGCTCAAAAG
1 AGCTTCCTGTTATATGGCTCACATG
51143995 AGCTTCCTGTT-TATGTGCTC
1 AGCTTCCTGTTATATG-GCTC
51144015 GTATGAGCAT
Statistics
Matches: 99, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
23 1 0.01
24 43 0.43
25 55 0.56
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.35
Consensus pattern (25 bp):
AGCTTCCTGTTATATGGCTCACATG
Found at i:51151377 original size:659 final size:659
Alignment explanation
Indices: 51150119--51151436 Score: 2636
Period size: 659 Copynumber: 2.0 Consensus size: 659
51150109 TAAAAAGGGG
51150119 GAAGAAATCCCGATTGAATGGAAGGAAAATTTGATGGATCTCTGAAAAGGATTGACGGTAAAAAG
1 GAAGAAATCCCGATTGAATGGAAGGAAAATTTGATGGATCTCTGAAAAGGATTGACGGTAAAAAG
51150184 GATCTAGCCCGTACAGGTGATCCTATCCTGATATAGCCCTGCCGAAGAATATGTGGAAAATGGAT
66 GATCTAGCCCGTACAGGTGATCCTATCCTGATATAGCCCTGCCGAAGAATATGTGGAAAATGGAT
51150249 TTAGCCCGGACGGGTAATCCGAATTAGGGTCTGAATTTAGCCTGGACTGGTAATTCAGATCCAAG
131 TTAGCCCGGACGGGTAATCCGAATTAGGGTCTGAATTTAGCCTGGACTGGTAATTCAGATCCAAG
51150314 CTCATTAGAGTAATTGTCATTGTAAGGGATTTAGCCTGGACTGGTAATCCTGACAATACCCTATG
196 CTCATTAGAGTAATTGTCATTGTAAGGGATTTAGCCTGGACTGGTAATCCTGACAATACCCTATG
51150379 AGTTTATATTACAGGGGATTTAGCCTGGACAGATAATCCCGCTGTAAGGATGAGGTTCGCGGGAG
261 AGTTTATATTACAGGGGATTTAGCCTGGACAGATAATCCCGCTGTAAGGATGAGGTTCGCGGGAG
51150444 TGTGCTCTCTGAAATGGAAATGTGCGCACATGAATATGAATTGACGGACCCGGATTTGTACACTT
326 TGTGCTCTCTGAAATGGAAATGTGCGCACATGAATATGAATTGACGGACCCGGATTTGTACACTT
51150509 AAGTGTACCCCTGAAAATCCATCGAAATTCTGAGAAATTCAACGGGATAAATATAGAAAAATAAC
391 AAGTGTACCCCTGAAAATCCATCGAAATTCTGAGAAATTCAACGGGATAAATATAGAAAAATAAC
51150574 AAGGGAATGGAAATCATGGAATTGATGAGCTCATCAATCGTGATACATATATTACTGATACATGG
456 AAGGGAATGGAAATCATGGAATTGATGAGCTCATCAATCGTGATACATATATTACTGATACATGG
51150639 AAATTATTGAACTAACTTGAATGTTGAGTTTGTGCATGATAGGGGAATAATGTATTAAATGGATG
521 AAATTATTGAACTAACTTGAATGTTGAGTTTGTGCATGATAGGGGAATAATGTATTAAATGGATG
51150704 TATGAATGTTTATTGTATGGTATTGAAAATATTAGGTAAATATAATTCTTGTTACATGAGCTTAC
586 TATGAATGTTTATTGTATGGTATTGAAAATATTAGGTAAATATAATTCTTGTTACATGAGCTTAC
51150769 TAAGCACAA
651 TAAGCACAA
51150778 GAAGAAATCCCGATTGAATGGAAGGAAAATTTGATGGATCTCTGAAAAGGATTGACGGTAAAAAG
1 GAAGAAATCCCGATTGAATGGAAGGAAAATTTGATGGATCTCTGAAAAGGATTGACGGTAAAAAG
51150843 GATCTAGCCCGTACAGGTGATCCTATCCTGATATAGCCCTGCCGAAGAATATGTGGAAAATGGAT
66 GATCTAGCCCGTACAGGTGATCCTATCCTGATATAGCCCTGCCGAAGAATATGTGGAAAATGGAT
51150908 TTAGCCCGGACGGGTAATCCGAATTAGGGTCTGAATTTAGCCTGGACTGGTAATTCAGATCCAAG
131 TTAGCCCGGACGGGTAATCCGAATTAGGGTCTGAATTTAGCCTGGACTGGTAATTCAGATCCAAG
51150973 CTCATTAGAGTAATTGTCATTGTAAGGGATTTAGCCTGGACTGGTAATCCTGACAATACCCTATG
196 CTCATTAGAGTAATTGTCATTGTAAGGGATTTAGCCTGGACTGGTAATCCTGACAATACCCTATG
51151038 AGTTTATATTACAGGGGATTTAGCCTGGACAGATAATCCCGCTGTAAGGATGAGGTTCGCGGGAG
261 AGTTTATATTACAGGGGATTTAGCCTGGACAGATAATCCCGCTGTAAGGATGAGGTTCGCGGGAG
51151103 TGTGCTCTCTGAAATGGAAATGTGCGCACATGAATATGAATTGACGGACCCGGATTTGTACACTT
326 TGTGCTCTCTGAAATGGAAATGTGCGCACATGAATATGAATTGACGGACCCGGATTTGTACACTT
51151168 AAGTGTACCCCTGAAAATCCATCGAAATTCTGAGAAATTCAACGGGATAAATATAGAAAAATAAC
391 AAGTGTACCCCTGAAAATCCATCGAAATTCTGAGAAATTCAACGGGATAAATATAGAAAAATAAC
51151233 AAGGGAATGGAAATCATGGAATTGATGAGCTCATCAATCGTGATACATATATTACTGATACATGG
456 AAGGGAATGGAAATCATGGAATTGATGAGCTCATCAATCGTGATACATATATTACTGATACATGG
51151298 AAATTATTGAACTAACTTGAATGTTGAGTTTGTGCATGATAGGGGAATAATGTATTAAATGGATG
521 AAATTATTGAACTAACTTGAATGTTGAGTTTGTGCATGATAGGGGAATAATGTATTAAATGGATG
51151363 TATGAATGTTTATTGTATGGTATTGAAAATATTAGGTAAATATAATTCTTGTTACATGAGCTTAC
586 TATGAATGTTTATTGTATGGTATTGAAAATATTAGGTAAATATAATTCTTGTTACATGAGCTTAC
51151428 TAAGCACAA
651 TAAGCACAA
51151437 AGTGCTTACC
Statistics
Matches: 659, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
659 659 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (659 bp):
GAAGAAATCCCGATTGAATGGAAGGAAAATTTGATGGATCTCTGAAAAGGATTGACGGTAAAAAG
GATCTAGCCCGTACAGGTGATCCTATCCTGATATAGCCCTGCCGAAGAATATGTGGAAAATGGAT
TTAGCCCGGACGGGTAATCCGAATTAGGGTCTGAATTTAGCCTGGACTGGTAATTCAGATCCAAG
CTCATTAGAGTAATTGTCATTGTAAGGGATTTAGCCTGGACTGGTAATCCTGACAATACCCTATG
AGTTTATATTACAGGGGATTTAGCCTGGACAGATAATCCCGCTGTAAGGATGAGGTTCGCGGGAG
TGTGCTCTCTGAAATGGAAATGTGCGCACATGAATATGAATTGACGGACCCGGATTTGTACACTT
AAGTGTACCCCTGAAAATCCATCGAAATTCTGAGAAATTCAACGGGATAAATATAGAAAAATAAC
AAGGGAATGGAAATCATGGAATTGATGAGCTCATCAATCGTGATACATATATTACTGATACATGG
AAATTATTGAACTAACTTGAATGTTGAGTTTGTGCATGATAGGGGAATAATGTATTAAATGGATG
TATGAATGTTTATTGTATGGTATTGAAAATATTAGGTAAATATAATTCTTGTTACATGAGCTTAC
TAAGCACAA
Found at i:51152575 original size:681 final size:680
Alignment explanation
Indices: 51151272--51152632 Score: 2713
Period size: 681 Copynumber: 2.0 Consensus size: 680
51151262 CTCATCAATC
51151272 GTGATACATATATTACTGATACATGGAAATTATTGAACTAACTTGAATGTTGAGTTTGTGCATGA
1 GTGATACATATATTACTGATACATGGAAATTATTGAACTAACTTGAATGTTGAGTTTGTGCATGA
51151337 TAGGGGAATAATGTATTAAATGGATGTATGAATGTTTATTGTATGGTATTGAAAATATTAGGTAA
66 TAGGGGAATAATGTATTAAATGGATGTATGAATGTTTATTGTATGGTATTGAAAATATTAGGTAA
51151402 ATATAATTCTTGTTACATGAGCTTACTAAGCACAAAGTGCTTACCCTGTTTCTTTTTCCCCTGTT
131 ATATAATTCTTGTTACATGAGCTTACTAAGCACAAAGTGCTTACCCTGTTTCTTTTTCCCCTGTT
51151467 TTGTAGTATTAAGAGCTCGGAGGTCGGATTTGGTCGGAGACGCATCACACTATCAACCTCAAGAT
196 TTGTAGTATTAAGAGCTCGGAGGTCGGATTTGGTCGGAGACGCATCACACTATCAACCTCAAGAT
51151532 CTAGGTATATAAAGAAGCTTTATTTTGGAAATCAATGGCATGTATAAGCTAGTAAAGTAAATGTT
261 CTAGGTATATAAAGAAGCTTTATTTTGGAAATCAATGGCATGTATAAGCTAGTAAAGTAAATGTT
51151597 AATGTGAAATGAATGTATGGTTTGCCATTGGTATGGCTAACAAATTTTGGTTTTGGTAGGTGATG
326 AATGTGAAATGAATGTATGGTTTGCCATTGGTATGGCTAACAAATTTTGGTTTTGGTAGGTGATG
51151662 AAGTTATCTTATGAATATGTGAAATCTATCTTGAAAATATGTTGAAATGGATTGGTTGTGTTGAA
391 AAGTTATCTTATGAATATGTGAAATCTATCTTGAAAATATGTTGAAATGGATTGGTTGTGTTGAA
51151727 TTGGTCTCGGTTTAAAATTACAGGGAGGATTAGATATTTATAAAGTGGTTATATTGAGTTCAAAG
456 TTGGTCTCGGTTTAAAATTACAGGGAGGATTAGATATTTATAAAGTGGTTATATTGAGTTCAAAG
51151792 AAAAAACTTTAGGGATTTTGCAAAAAAAAATTTCTTATGGTTTCGATTTAATCCCGGTTTGGTCC
521 AAAAAACTTTAGGGATTTTGCAAAAAAAAATTTCTTATGGTTTCGATTTAATCCCGGTTTGGTCC
51151857 CAATGTATGTTTTGGGATTCGGAGGCCCATCCAAGGGACATCATAACATGTTTCGATAAATGAAT
586 CAATGTATGTTTTGGGATTCGGAGGCCCATCCAAGGGACATCATAACATGTTTCGATAAATGAAT
51151922 AGTATTTAACTCGTAATAACAAAAAATTTA
651 AGTATTTAACTCGTAATAACAAAAAATTTA
51151952 NGTGATACATATATTACTGATACATGGAAATTATTGAACTAACTTGAATGTTGAGTTTGTGCATG
1 -GTGATACATATATTACTGATACATGGAAATTATTGAACTAACTTGAATGTTGAGTTTGTGCATG
51152017 ATAGGGGAATAATGTATTAAATGGATGTATGAATGTTTATTGTATGGTATTGAAAATATTAGGTA
65 ATAGGGGAATAATGTATTAAATGGATGTATGAATGTTTATTGTATGGTATTGAAAATATTAGGTA
51152082 AATATAATTCTTGTTACATGAGCTTACTAAGCACAAAGTGCTTACCCTGTTTCTTTTTCCCCTGT
130 AATATAATTCTTGTTACATGAGCTTACTAAGCACAAAGTGCTTACCCTGTTTCTTTTTCCCCTGT
51152147 TTTGTAGTATTAAGAGCTCGGAGGTCGGATTTGGTCGGAGACGCATCACACTATCAACCTCAAGA
195 TTTGTAGTATTAAGAGCTCGGAGGTCGGATTTGGTCGGAGACGCATCACACTATCAACCTCAAGA
51152212 TCTAGGTATATAAAGAAGCTTTATTTTGGAAATCAATGGCATGTATAAGCTAGTAAAGTAAATGT
260 TCTAGGTATATAAAGAAGCTTTATTTTGGAAATCAATGGCATGTATAAGCTAGTAAAGTAAATGT
51152277 TAATGTGAAATGAATGTATGGTTTGCCATTGGTATGGCTAACAAATTTTGGTTTTGGTAGGTGAT
325 TAATGTGAAATGAATGTATGGTTTGCCATTGGTATGGCTAACAAATTTTGGTTTTGGTAGGTGAT
51152342 GAAGTTATCTTATGAATATGTGAAATCTATCTTGAAAATATGTTGAAATGGATTGGTTGTGTTGA
390 GAAGTTATCTTATGAATATGTGAAATCTATCTTGAAAATATGTTGAAATGGATTGGTTGTGTTGA
51152407 ATTGGTCTCGGTTTAAAATTACAGGGAGGATTAGATATTTATAAAGTGGTTATATTGAGTTCAAA
455 ATTGGTCTCGGTTTAAAATTACAGGGAGGATTAGATATTTATAAAGTGGTTATATTGAGTTCAAA
51152472 GAAAAAACTTTAGGGATTTTGCAAAAAAAAATTTCTTATGGTTTCGATTTAATCCCGGTTTGGTC
520 GAAAAAACTTTAGGGATTTTGCAAAAAAAAATTTCTTATGGTTTCGATTTAATCCCGGTTTGGTC
51152537 CCAATGTATGTTTTGGGATTCGGAGGCCCATCCAAGGGACATCATAACATGTTTCGATAAATGAA
585 CCAATGTATGTTTTGGGATTCGGAGGCCCATCCAAGGGACATCATAACATGTTTCGATAAATGAA
51152602 TAGTATTTAACTCGTAATAACAAAAAATTTA
650 TAGTATTTAACTCGTAATAACAAAAAATTTA
51152633 TTCGGTAAAA
Statistics
Matches: 680, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
681 680 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (680 bp):
GTGATACATATATTACTGATACATGGAAATTATTGAACTAACTTGAATGTTGAGTTTGTGCATGA
TAGGGGAATAATGTATTAAATGGATGTATGAATGTTTATTGTATGGTATTGAAAATATTAGGTAA
ATATAATTCTTGTTACATGAGCTTACTAAGCACAAAGTGCTTACCCTGTTTCTTTTTCCCCTGTT
TTGTAGTATTAAGAGCTCGGAGGTCGGATTTGGTCGGAGACGCATCACACTATCAACCTCAAGAT
CTAGGTATATAAAGAAGCTTTATTTTGGAAATCAATGGCATGTATAAGCTAGTAAAGTAAATGTT
AATGTGAAATGAATGTATGGTTTGCCATTGGTATGGCTAACAAATTTTGGTTTTGGTAGGTGATG
AAGTTATCTTATGAATATGTGAAATCTATCTTGAAAATATGTTGAAATGGATTGGTTGTGTTGAA
TTGGTCTCGGTTTAAAATTACAGGGAGGATTAGATATTTATAAAGTGGTTATATTGAGTTCAAAG
AAAAAACTTTAGGGATTTTGCAAAAAAAAATTTCTTATGGTTTCGATTTAATCCCGGTTTGGTCC
CAATGTATGTTTTGGGATTCGGAGGCCCATCCAAGGGACATCATAACATGTTTCGATAAATGAAT
AGTATTTAACTCGTAATAACAAAAAATTTA
Found at i:51156920 original size:16 final size:16
Alignment explanation
Indices: 51156899--51156934 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
51156889 TTTGGTTCGC
51156899 TGTATTAGATTAGAGG
1 TGTATTAGATTAGAGG
*
51156915 TGTATTGGATTAGAGG
1 TGTATTAGATTAGAGG
51156931 TGTA
1 TGTA
51156935 ATAGCAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.33, T:0.39
Consensus pattern (16 bp):
TGTATTAGATTAGAGG
Found at i:51159615 original size:16 final size:16
Alignment explanation
Indices: 51159578--51159619 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
51159568 TTAATCATAT
*
51159578 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
51159594 TT-AAATATATTATAA
1 TTAAAATATATTATAA
51159609 TTAAAATATAT
1 TTAAAATATAT
51159620 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:51159626 original size:14 final size:15
Alignment explanation
Indices: 51159587--51159628 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
51159577 TTTAAACATA
*
51159587 ATTATTATTAAATAT
1 ATTATAATTAAATAT
51159602 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
51159616 A-TATAATTTAATA
1 ATTATAATTAAATA
51159629 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:51162831 original size:9 final size:9
Alignment explanation
Indices: 51162817--51162868 Score: 95
Period size: 9 Copynumber: 5.8 Consensus size: 9
51162807 TTTGGTTAAA
51162817 AATTACCCG
1 AATTACCCG
51162826 AATTACCCG
1 AATTACCCG
51162835 AATTACCCG
1 AATTACCCG
51162844 AATTACCCG
1 AATTACCCG
*
51162853 AATTAACCG
1 AATTACCCG
51162862 AATTACC
1 AATTACC
51162869 GAAAAATACC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.37, C:0.31, G:0.10, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:51170026 original size:22 final size:21
Alignment explanation
Indices: 51169988--51170031 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
51169978 GTGAAACAAA
* *
51169988 TATGTAAATATATATAAAGTT
1 TATGTAAAAATAAATAAAGTT
*
51170009 TATGTTAAAAATAAATAAGGTT
1 TATG-TAAAAATAAATAAAGTT
51170031 T
1 T
51170032 TAGTTGAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (21 bp):
TATGTAAAAATAAATAAAGTT
Found at i:51171045 original size:20 final size:20
Alignment explanation
Indices: 51171020--51171084 Score: 64
Period size: 19 Copynumber: 3.3 Consensus size: 20
51171010 TATTAATTTC
51171020 TAATTTTTTAATAATTTATA
1 TAATTTTTTAATAATTTATA
* *
51171040 TAATTTTCT-ATAATTTTTA
1 TAATTTTTTAATAATTTATA
*
51171059 -ACATTTTTATAATATTTTA-A
1 TA-ATTTTT-TAATAATTTATA
51171079 TAATTT
1 TAATTT
51171085 CTAAAAGCTT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 14 0.39
20 14 0.39
21 7 0.19
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (20 bp):
TAATTTTTTAATAATTTATA
Found at i:51171470 original size:19 final size:21
Alignment explanation
Indices: 51171422--51171474 Score: 65
Period size: 19 Copynumber: 2.5 Consensus size: 21
51171412 ATTCTTTCAT
51171422 AATTTTCATAATATATTCAAAA
1 AATTTT-ATAATATATTCAAAA
*
51171444 ATATTTTATAATAT-TT-AATA
1 A-ATTTTATAATATATTCAAAA
51171464 AATTTTATAAT
1 AATTTTATAAT
51171475 TTATAAATTC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 10 0.34
20 4 0.14
21 2 0.07
22 8 0.28
23 5 0.17
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (21 bp):
AATTTTATAATATATTCAAAA
Found at i:51180241 original size:44 final size:42
Alignment explanation
Indices: 51180137--51180280 Score: 123
Period size: 44 Copynumber: 3.3 Consensus size: 42
51180127 TTGCTGCGAC
* * **
51180137 GCAACTTCA-GAGGTAAGATTTGCTATCTTCAGTCTGCTCCACT
1 GCAACTTCATGAGATAAGACTTGCTAT-TTCAACCTGCT-CACT
* *
51180180 GCAACTTCAATGAGATAAGACTTG-TATCTTTAACTTGCCTCACT
1 GCAACTTC-ATGAGATAAGACTTGCTAT-TTCAACCTG-CTCACT
* **
51180224 GCAACTTCATGGGGATAAGGTTTGCTATTTCAACCTGCTCTACT
1 GCAACTTCAT-GAGATAAGACTTGCTATTTCAACCTGCTC-ACT
51180268 GCAACTTCA-GAGA
1 GCAACTTCATGAGA
51180281 GAAAAAGTTT
Statistics
Matches: 83, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
42 3 0.04
43 13 0.16
44 51 0.61
45 16 0.19
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (42 bp):
GCAACTTCATGAGATAAGACTTGCTATTTCAACCTGCTCACT
Found at i:51180488 original size:44 final size:44
Alignment explanation
Indices: 51180343--51180923 Score: 211
Period size: 44 Copynumber: 12.9 Consensus size: 44
51180333 TTATGGTAGA
* ** * * * * *
51180343 TTTAATCTGTTCCACTAAAACTTCAGCGAAATAAGATTTGCTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTAG-TAAC
* * * * *
51180388 TTTAATCTACTCCTCTGCAACTTCAGGGAGATAGGATCCA-TCAT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGAT-TAGTAAC
* *
51180432 TTTAATCCGCTCCACTGCAACTTCAGGGAGGTAGGATTAGTAAC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAAC
* ** * * *
51180476 TTCAATCTGCTCCACTATAATTTCAGGGAGATAAGACTT-GTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGA-TTAGTAAC
* * * *
51180520 TTCAA-CTTG-TCCCACTGCAACTTCATGGG-GATAAGGTTTACT-AT
1 TTTAATC-TGCT-CCACTGCAACTTCA-GGGAGAT-AGGATTAGTAAC
* * * * *
51180564 TTTAACCTGCTCTACTACAACTTTAGAGAGAT-GAGATCTGTTATGGTAGA-
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAG-GA----TTA--GTA-AC
* * * * * * *
51180614 TTTAATTTGTTCCACTGCAACTTTAGGGAAATAAGATTTGCTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTAG-TAAC
* * * * *
51180659 TTTAATCTGTTCCACTGTAACTTCAGGGAGATAGGATCCA-TCAT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGAT-TAGTAAC
* *
51180703 TTTAATCTGCTCCACTGTAACTTCAGAGACG-TAGGATTAGTAAC
1 TTTAATCTGCTCCACTGCAACTTCAGGGA-GATAGGATTAGTAAC
* * * *
51180747 TTCAA-CTTGCCCCACTGCAACTTCATGGG-GATAAGATTTGCT-A-
1 TTTAATC-TGCTCCACTGCAACTTCA-GGGAGATAGGATTAG-TAAC
* * * *
51180790 TTTCAACCTGCTCTACTGCAACTTCAGAGAGATGAGATATGTTATGGTAGA-
1 TTT-AATCTGCTCCACTGCAACTTCAGGGAGAT-AG-GA--TTA--GTA-AC
** * * * * *
51180841 TTTAATCTATTCCACTACAACTTCAGGGAAATAAGATTTGATATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTAG-TAAC
* * * * *
51180886 TTTAATCTACTCCGCTGTAACTTCAAGAAGATAGGATT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATT
51180924 TGTGGTGATT
Statistics
Matches: 393, Mismatches: 100, Indels: 86
0.68 0.17 0.15
Matches are distributed among these distances:
42 1 0.00
43 13 0.03
44 199 0.51
45 111 0.28
46 5 0.01
47 3 0.01
48 3 0.01
49 3 0.01
50 50 0.13
51 5 0.01
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (44 bp):
TTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAAC
Found at i:51180652 original size:271 final size:271
Alignment explanation
Indices: 51180172--51180815 Score: 790
Period size: 271 Copynumber: 2.4 Consensus size: 271
51180162 TCTTCAGTCT
* * * * *
51180172 GCTCCACTGCAACTTCA-ATGA-GATAAGACTT-GTATCTTTAACTTGCCTCACTGCAACTTCAT
1 GCTCCACTGCAACTTCAGA-GACG-TAGGA-TTAGTAACTTCAACTTGCCCCACTACAACTTCAT
** * * * *
51180234 GGGGATAAGGTTTGCTATTTCAACCTGCTCTACTGCAACTTCA-GAGAGAAAAAGTTTGA-TA--
63 GGGGATAAGACTTGCTATTTCAACCTGCTCCACTGCAACTTCATG-GGGATAAGGTTT-ACTATT
* * * **
51180295 -TGATCTGCTCTATTGTAACTTCAGAGAGATGAGATCTGTTATGGTAGATTTAATCTGTTCCACT
126 TTAACCTGCTCTACTACAACTTCAGAGAGATGAGATCTGTTATGGTAGATTTAATCTGTTCCACT
*
51180359 AAAACTTCAGCGAAATAAGATTTGCTATCTTTAATCTACTCCTCTGCAACTTCAGGGAGATAGGA
191 AAAACTTCAGCGAAATAAGATTTGCTATCTTTAATCTACTCCACTGCAACTTCAGGGAGATAGGA
51180424 TCCATCATTTTAATCC
256 TCCATCATTTTAATCC
* * * * *
51180440 GCTCCACTGCAACTTCAGGGAGGTAGGATTAGTAACTTCAA-TCTGCTCCACTATAATTTCA-GG
1 GCTCCACTGCAACTTCAGAGACGTAGGATTAGTAACTTCAACT-TGCCCCACTACAACTTCATGG
*
51180503 GAGATAAGACTTG-TATCTTCAACTTG-TCCCACTGCAACTTCATGGGGATAAGGTTTACTATTT
65 G-GATAAGACTTGCTAT-TTCAACCTGCT-CCACTGCAACTTCATGGGGATAAGGTTTACTATTT
* * *
51180566 TAACCTGCTCTACTACAACTTTAGAGAGATGAGATCTGTTATGGTAGATTTAATTTGTTCCACTG
127 TAACCTGCTCTACTACAACTTCAGAGAGATGAGATCTGTTATGGTAGATTTAATCTGTTCCACTA
* * * ** *
51180631 CAACTTTAGGGAAATAAGATTTGCTATCTTTAATCTGTTCCACTGTAACTTCAGGGAGATAGGAT
192 AAACTTCAGCGAAATAAGATTTGCTATCTTTAATCTACTCCACTGCAACTTCAGGGAGATAGGAT
*
51180696 CCATCATTTTAATCT
257 CCATCATTTTAATCC
* *
51180711 GCTCCACTGTAACTTCAGAGACGTAGGATTAGTAACTTCAACTTGCCCCACTGCAACTTCATGGG
1 GCTCCACTGCAACTTCAGAGACGTAGGATTAGTAACTTCAACTTGCCCCACTACAACTTCATGGG
* *
51180776 GATAAGATTTGCTATTTCAACCTGCTCTACTGCAACTTCA
66 GATAAGACTTGCTATTTCAACCTGCTCCACTGCAACTTCA
51180816 GAGAGATGAG
Statistics
Matches: 318, Mismatches: 42, Indels: 29
0.82 0.11 0.07
Matches are distributed among these distances:
267 11 0.03
268 85 0.27
269 2 0.01
271 212 0.67
272 8 0.03
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (271 bp):
GCTCCACTGCAACTTCAGAGACGTAGGATTAGTAACTTCAACTTGCCCCACTACAACTTCATGGG
GATAAGACTTGCTATTTCAACCTGCTCCACTGCAACTTCATGGGGATAAGGTTTACTATTTTAAC
CTGCTCTACTACAACTTCAGAGAGATGAGATCTGTTATGGTAGATTTAATCTGTTCCACTAAAAC
TTCAGCGAAATAAGATTTGCTATCTTTAATCTACTCCACTGCAACTTCAGGGAGATAGGATCCAT
CATTTTAATCC
Found at i:51180681 original size:45 final size:43
Alignment explanation
Indices: 51180613--51180728 Score: 126
Period size: 45 Copynumber: 2.6 Consensus size: 43
51180603 GTTATGGTAG
* * * *
51180613 ATTTAATTTGTTCCACTGCAACTTTAGGGAAATAAGATTTGCTATC
1 ATTTAATCTGTTCCACTGTAACTTCAGGGAAATAAGA--T-CCATC
* *
51180659 -TTTAATCTGTTCCACTGTAACTTCAGGGAGATAGGATCCATC
1 ATTTAATCTGTTCCACTGTAACTTCAGGGAAATAAGATCCATC
*
51180701 ATTTTAATCTGCTCCACTGTAACTTCAG
1 A-TTTAATCTGTTCCACTGTAACTTCAG
51180729 AGACGTAGGA
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
42 4 0.07
43 1 0.02
44 25 0.41
45 31 0.51
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.37
Consensus pattern (43 bp):
ATTTAATCTGTTCCACTGTAACTTCAGGGAAATAAGATCCATC
Found at i:51180763 original size:227 final size:227
Alignment explanation
Indices: 51180388--51180922 Score: 675
Period size: 227 Copynumber: 2.4 Consensus size: 227
51180378 ATTTGCTATC
* * * * * ** * *
51180388 TTTAATCTACTCCTCTGCAACTTCAGGGAGATAGGA-TCCATCAT-TTTAATCCGCTCCACTGCA
1 TTTAATCTATTCCACTACAACTTCAGGGAAATAAGATTTGAT-ATCTTTAATCTGCTCCACTGTA
* * * *
51180451 ACTTCAGGGAGGTAGGATTAGTAACTTCAATCTGCTCCACTATAATTTCAGGGAGATAAGACTTG
65 ACTTCAGGGAGATAGGATCAGTAACTTCAATCTGCTCCACTATAACTTCAGAGAGATAAGACTTG
* * * *
51180516 TATCTTCAACTTGTCCCACTGCAACTTCATGGGGATAAGGTTTACTATTTTAACCTGCTCTACTA
130 TAACTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGATTTACTATTTCAACCTGCTCTACTA
* *
51180581 CAACTTTAGAGAGATGAGATCTGTTATGGTAGA
195 CAACTTCAGAGAGATGAGATATGTTATGGTAGA
* * * * * *
51180614 TTTAATTTGTTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTTAATCTGTTCCACTGTAA
1 TTTAATCTATTCCACTACAACTTCAGGGAAATAAGATTTGATATCTTTAATCTGCTCCACTGTAA
* * * * *
51180679 CTTCAGGGAGATAGGATCCA-TCATTTTAATCTGCTCCACTGTAACTTCAGAGACG-TAGGA-TT
66 CTTCAGGGAGATAGGAT-CAGTAACTTCAATCTGCTCCACTATAACTTCAGAGA-GATAAGACTT
*
51180741 AGTAACTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGATTTGCTATTTCAACCTGCTCTAC
129 -GTAACTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGATTTACTATTTCAACCTGCTCTAC
*
51180806 TGCAACTTCAGAGAGATGAGATATGTTATGGTAGA
193 TACAACTTCAGAGAGATGAGATATGTTATGGTAGA
* *
51180841 TTTAATCTATTCCACTACAACTTCAGGGAAATAAGATTTGATATCTTTAATCTACTCCGCTGTAA
1 TTTAATCTATTCCACTACAACTTCAGGGAAATAAGATTTGATATCTTTAATCTGCTCCACTGTAA
* *
51180906 CTTCAAGAAGATAGGAT
66 CTTCAGGGAGATAGGAT
51180923 TTGTGGTGAT
Statistics
Matches: 264, Mismatches: 40, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
226 33 0.12
227 229 0.87
228 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (227 bp):
TTTAATCTATTCCACTACAACTTCAGGGAAATAAGATTTGATATCTTTAATCTGCTCCACTGTAA
CTTCAGGGAGATAGGATCAGTAACTTCAATCTGCTCCACTATAACTTCAGAGAGATAAGACTTGT
AACTTCAACTTGCCCCACTGCAACTTCATGGGGATAAGATTTACTATTTCAACCTGCTCTACTAC
AACTTCAGAGAGATGAGATATGTTATGGTAGA
Found at i:51181871 original size:104 final size:104
Alignment explanation
Indices: 51181691--51181885 Score: 302
Period size: 104 Copynumber: 1.9 Consensus size: 104
51181681 TGAAAAACGT
* * * *
51181691 TTGAAAAAAATTGTCACAATGGACAAGATGAAATTTTATTGAGAACAAAGCTTGAGATGAATAAG
1 TTGAAAAAAATTATCACAATGGACAAAATGAAATTTTATTGAGAACAAAGCTCGAGATGAATAAA
*
51181756 TTAATCAGGATAGCAAATTTTGCTAATATACGAAATAAG
66 TTAATCAGGATAACAAATTTTGCTAATATACGAAATAAG
* * *
51181795 TTGAAAAAGATTATTACAATGGACAAAATGAAATTTTATTTA-AAGCAAAGCTCGAGATGAATAA
1 TTGAAAAAAATTATCACAATGGACAAAATGAAATTTTATTGAGAA-CAAAGCTCGAGATGAATAA
51181859 ATTAATCAGGATAACAAATTTTGCTAA
65 ATTAATCAGGATAACAAATTTTGCTAA
51181886 GATTCAAAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
103 2 0.02
104 80 0.98
ACGTcount: A:0.46, C:0.09, G:0.16, T:0.29
Consensus pattern (104 bp):
TTGAAAAAAATTATCACAATGGACAAAATGAAATTTTATTGAGAACAAAGCTCGAGATGAATAAA
TTAATCAGGATAACAAATTTTGCTAATATACGAAATAAG
Found at i:51194203 original size:14 final size:15
Alignment explanation
Indices: 51194184--51194218 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
51194174 ATTTTGGGTA
*
51194184 TTGGGCTTTAGATT-
1 TTGGGCTTGAGATTG
51194198 TTGGGCTTGAGATTG
1 TTGGGCTTGAGATTG
51194213 TTGGGC
1 TTGGGC
51194219 CTCGGGTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.11, C:0.09, G:0.37, T:0.43
Consensus pattern (15 bp):
TTGGGCTTGAGATTG
Found at i:51194472 original size:17 final size:17
Alignment explanation
Indices: 51194430--51194463 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
51194420 CTTTTCTTCT
*
51194430 CCAACTTTATCTATTAG
1 CCAACTTTGTCTATTAG
51194447 CCAACTTTGTCTATTAG
1 CCAACTTTGTCTATTAG
51194464 TTAACTTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.24, G:0.09, T:0.41
Consensus pattern (17 bp):
CCAACTTTGTCTATTAG
Found at i:51197726 original size:25 final size:27
Alignment explanation
Indices: 51197698--51197747 Score: 77
Period size: 25 Copynumber: 1.9 Consensus size: 27
51197688 ATATTTTTCT
51197698 ATGATGAAACAT-T-TATTATTAAATA
1 ATGATGAAACATATATATTATTAAATA
*
51197723 ATGATGAAATATATATATTATTAAA
1 ATGATGAAACATATATATTATTAAA
51197748 ATAGTAACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 11 0.50
26 1 0.05
27 10 0.45
ACGTcount: A:0.50, C:0.02, G:0.08, T:0.40
Consensus pattern (27 bp):
ATGATGAAACATATATATTATTAAATA
Found at i:51207303 original size:26 final size:26
Alignment explanation
Indices: 51207274--51207346 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
51207264 CTCGTTATAT
*
51207274 GGCTCTTCATGAGCTTCTCGATTAAA
1 GGCTCTTCATGAGCTTCTCGATCAAA
* * *
51207300 GGCTCTTCGTGAGCTTCTTGATCAAT
1 GGCTCTTCATGAGCTTCTCGATCAAA
*
51207326 GGCTCTCCA-GAGCTTCTCGAT
1 GGCTCTTCATGAGCTTCTCGAT
51207347 ATGGCTCGCT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
25 11 0.28
26 29 0.73
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (26 bp):
GGCTCTTCATGAGCTTCTCGATCAAA
Found at i:51209582 original size:25 final size:25
Alignment explanation
Indices: 51209548--51209636 Score: 92
Period size: 25 Copynumber: 3.6 Consensus size: 25
51209538 CCAACATGTA
*
51209548 AACGGGAAGCTCTTTCGAGCCATAT
1 AACGGGAAGCTCATTCGAGCCATAT
*
51209573 AACGGGAAGCTCAGGT-GAGCCATGA-
1 AACGGGAAGCTCA-TTCGAGCCAT-AT
* **
51209598 AATGGGAAGCTCATTCGAGCTGTAT
1 AACGGGAAGCTCATTCGAGCCATAT
*
51209623 AACAGGAAGCTCAT
1 AACGGGAAGCTCAT
51209637 AAGAGCCGTA
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
24 2 0.04
25 48 0.92
26 2 0.04
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.20
Consensus pattern (25 bp):
AACGGGAAGCTCATTCGAGCCATAT
Found at i:51209643 original size:50 final size:51
Alignment explanation
Indices: 51209542--51209643 Score: 125
Period size: 50 Copynumber: 2.0 Consensus size: 51
51209532 CTATTGCCAA
* * **
51209542 CATGTAAACGGGAAGCTCTTTCGAGCCATATAACGGGAAGCTCAGGTGAGC
1 CATGTAAACGGGAAGCTCATTCGAGCCATATAACAGGAAGCTCAGAAGAGC
* ** *
51209593 CATG-AAATGGGAAGCTCATTCGAGCTGTATAACAGGAAGCTCATAAGAGC
1 CATGTAAACGGGAAGCTCATTCGAGCCATATAACAGGAAGCTCAGAAGAGC
51209643 C
1 C
51209644 GTAATTAGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
50 39 0.91
51 4 0.09
ACGTcount: A:0.32, C:0.21, G:0.27, T:0.20
Consensus pattern (51 bp):
CATGTAAACGGGAAGCTCATTCGAGCCATATAACAGGAAGCTCAGAAGAGC
Found at i:51209742 original size:50 final size:50
Alignment explanation
Indices: 51209670--51209767 Score: 110
Period size: 50 Copynumber: 2.0 Consensus size: 50
51209660 AGCGAGCCAA
* * *
51209670 TATCGAGAAGCTCCGGAGAGCC-ATTAATCAGGAAA-CTCACAAGAGCCAGT
1 TATCGAGAAGCTCCGAAAAGCCAATT-ATC-GAAAAGCTCACAAGAGCCAGT
* * *
51209720 TATCGCGAAGCTCTGAAAAGCCAATTATCGAAAAGCTCATAAGAGCCA
1 TATCGAGAAGCTCCGAAAAGCCAATTATCGAAAAGCTCACAAGAGCCA
51209768 TAAACGGGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
49 4 0.10
50 33 0.82
51 3 0.08
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (50 bp):
TATCGAGAAGCTCCGAAAAGCCAATTATCGAAAAGCTCACAAGAGCCAGT
Found at i:51209766 original size:25 final size:25
Alignment explanation
Indices: 51209663--51209767 Score: 65
Period size: 25 Copynumber: 4.2 Consensus size: 25
51209653 AAGTTCAAGC
* ***
51209663 GAGCCAA-TATCGAGAAGCTCCGGA
1 GAGCCAATTATCGAAAAGCTCATAA
* *
51209687 GAGCC-ATTAATCAGGAAA-CTCACAA
1 GAGCCAATT-ATC-GAAAAGCTCATAA
* **
51209712 GAGCCAGTTATCGCGAAGCTC-TGAA
1 GAGCCAATTATCGAAAAGCTCAT-AA
*
51209737 AAGCCAATTATCGAAAAGCTCATAA
1 GAGCCAATTATCGAAAAGCTCATAA
51209762 GAGCCA
1 GAGCCA
51209768 TAAACGGGAA
Statistics
Matches: 60, Mismatches: 14, Indels: 13
0.69 0.16 0.15
Matches are distributed among these distances:
23 1 0.02
24 9 0.15
25 44 0.73
26 6 0.10
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.16
Consensus pattern (25 bp):
GAGCCAATTATCGAAAAGCTCATAA
Found at i:51209805 original size:25 final size:24
Alignment explanation
Indices: 51209760--51209831 Score: 83
Period size: 25 Copynumber: 3.0 Consensus size: 24
51209750 AAAAGCTCAT
51209760 AAGAGCCATA-AACGGGAAGCTCGC
1 AAGAGCCATATAACGGGAAGCTC-C
* *
51209784 AAGAACCATATAACGGGTAGCTCC
1 AAGAGCCATATAACGGGAAGCTCC
* *
51209808 ACAGAGCCATATATCGGGACGCTC
1 A-AGAGCCATATAACGGGAAGCTC
51209832 ATAAGAGCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
24 11 0.28
25 29 0.73
ACGTcount: A:0.35, C:0.26, G:0.25, T:0.14
Consensus pattern (24 bp):
AAGAGCCATATAACGGGAAGCTCC
Found at i:51209838 original size:25 final size:24
Alignment explanation
Indices: 51209753--51209839 Score: 79
Period size: 25 Copynumber: 3.5 Consensus size: 24
51209743 ATTATCGAAA
51209753 AGCTCATAAGAGCCATA-AACGGG
1 AGCTCATAAGAGCCATATAACGGG
** *
51209776 AAGCTCGCAAGAACCATATAACGGG
1 -AGCTCATAAGAGCCATATAACGGG
* *
51209801 TAGCTCCA-CAGAGCCATATATCGGG
1 -AGCT-CATAAGAGCCATATAACGGG
51209826 ACGCTCATAAGAGC
1 A-GCTCATAAGAGC
51209840 TACGGTGTAT
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
24 17 0.34
25 32 0.64
26 1 0.02
ACGTcount: A:0.36, C:0.25, G:0.24, T:0.15
Consensus pattern (24 bp):
AGCTCATAAGAGCCATATAACGGG
Found at i:51221238 original size:24 final size:24
Alignment explanation
Indices: 51221211--51221262 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
51221201 TTAGTAAGTC
*
51221211 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
51221235 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
51221259 AAAT
1 AAAT
51221263 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:51223208 original size:24 final size:24
Alignment explanation
Indices: 51223181--51223232 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
51223171 TTAGTAAGTC
*
51223181 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
51223205 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
51223229 AAAT
1 AAAT
51223233 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:51232894 original size:3 final size:3
Alignment explanation
Indices: 51232886--51232955 Score: 92
Period size: 3 Copynumber: 23.7 Consensus size: 3
51232876 AAATAGAAAT
*
51232886 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AGCTA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA ATA ATA
51232933 A-A AT- ATA ATA AT- ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
51232956 GAAAAAGTAA
Statistics
Matches: 60, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
2 6 0.10
3 51 0.85
5 3 0.05
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:51234508 original size:138 final size:129
Alignment explanation
Indices: 51234324--51234619 Score: 349
Period size: 129 Copynumber: 2.2 Consensus size: 129
51234314 GTGATTTTAG
* * * *
51234324 TCTGCCCCACTGCAACTTCAGGGAGACAATACTTGTAATGGTAGATTTAATCCGACCTACTGCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATGGTAGATTTAATCAGACCTACTGCAA
* * * *
51234389 CTTCAGTGGTATAGGTTTCATCATTTTAATCTGTTCCACTGCAACTTCAGGGAGATAGGATTAGT
66 C-T---T-G-AGAGG--T-ATCATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAAT
*
51234454 AGCTTCAG
122 AGCTTCAA
* * * * * *
51234462 TTTGCTCCACTGCAACTTTAGAGAGATAAGACTTGTTATGGTAGATTTAATCAGTCTTACTGCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATGGTAGATTTAATCAGACCTACTGCAA
* *
51234527 CTTGAGAGGTATCGTTTTAATCCGCTCCACTTCAACTTCAGGGAGATAGGATTAATAGCTTCAA
66 CTTGAGAGGTATCATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAATAGCTTCAA
*
51234591 TCTGTTCCACTGCAACTTCAGGGAGATAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAA
51234620 AGTTGGTATT
Statistics
Matches: 137, Mismatches: 21, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
129 73 0.53
130 1 0.01
132 4 0.03
133 1 0.01
134 1 0.01
137 1 0.01
138 56 0.41
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (129 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATGGTAGATTTAATCAGACCTACTGCAA
CTTGAGAGGTATCATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAATAGCTTCAA
Found at i:51235238 original size:22 final size:23
Alignment explanation
Indices: 51235207--51235261 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
51235197 AATCTTCAAC
51235207 CTACTTGTAATA-TCCAAAAATTA
1 CTAC-TGTAATACTCCAAAAATTA
*
51235230 CTACTGTAATACTCCGAAAATTA
1 CTACTGTAATACTCCAAAAATTA
*
51235253 CTACAGTAA
1 CTACTGTAA
51235262 GAAAGTAGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 7 0.24
23 22 0.76
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (23 bp):
CTACTGTAATACTCCAAAAATTA
Found at i:51237698 original size:88 final size:89
Alignment explanation
Indices: 51237549--51237977 Score: 449
Period size: 88 Copynumber: 4.8 Consensus size: 89
51237539 GGGTGTTACA
* * * * * *
51237549 CTACTCCACTGCTGCTTAAGG-AGATAAGACTGGTGTCTTCGATCTACTTCGCTGCCAATACAAG
1 CTACTCCACTACTGCTCAAGGAAGATAAGGCTGGTGTTTTCGATCTGCTTCACTGCCAATACAAG
*
51237613 AAGACAAGATCTACTATCTTCAAC
66 AAGACAAGATCTACAATCTTCAAC
* * * * **
51237637 CTACTCCACAACTGTTCAAGG-AGATAAGGTTTGT-TATTTCGATCTGCTTCACTGTTAATACAA
1 CTACTCCACTACTGCTCAAGGAAGATAAGGCTGGTGT-TTTCGATCTGCTTCACTGCCAATACAA
*
51237700 GAAGACAAGATCTACAATCTTAAAC
65 GAAGACAAGATCTACAATCTTCAAC
*
51237725 CTACTGAAACCTACTCCACTGCTGCTTAGGAAGATAAGGCTGGTGTTTTCGATCTGCTTCACTGC
1 CTACT----CC-ACT--ACTGCT-C-AAGGAAGATAAGGCTGGTGTTTTCGATCTGCTTCACTGC
*
51237790 CAGTA-AAGGAAGACAAGATCTACAATCTTCAAC
57 CAATACAA-GAAGACAAGATCTACAATCTTCAAC
* * * * * * *
51237823 CTACTCCACTGCTGCTC-AGGGAGATAAGGTTTGT-TATTTTGATCTGCTTCATTGCCAATACAG
1 CTACTCCACTACTGCTCAAGGAAGATAAGGCTGGTGT-TTTCGATCTGCTTCACTGCCAATACAA
**
51237886 GAAGACAAGATCTGTAATCTTCAAC
65 GAAGACAAGATCTACAATCTTCAAC
* * *
51237911 CTACTCCACTGCTGCTC-AGGAAGATAAGGCTGGTGTTTTCGATCTGCTTCACTGCCAGTACAGG
1 CTACTCCACTACTGCTCAAGGAAGATAAGGCTGGTGTTTTCGATCTGCTTCACTGCCAATACAAG
51237975 AAG
66 AAG
51237978 GCTTCACTGC
Statistics
Matches: 286, Mismatches: 39, Indels: 32
0.80 0.11 0.09
Matches are distributed among these distances:
87 2 0.01
88 194 0.68
89 2 0.01
90 1 0.00
91 5 0.02
92 2 0.01
93 5 0.02
94 2 0.01
95 5 0.02
96 1 0.00
97 5 0.02
98 61 0.21
99 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (89 bp):
CTACTCCACTACTGCTCAAGGAAGATAAGGCTGGTGTTTTCGATCTGCTTCACTGCCAATACAAG
AAGACAAGATCTACAATCTTCAAC
Found at i:51237869 original size:186 final size:176
Alignment explanation
Indices: 51237549--51237977 Score: 565
Period size: 186 Copynumber: 2.4 Consensus size: 176
51237539 GGGTGTTACA
* * * * *
51237549 CTACTCCACTGCTGCTTAAGG-AGATAAGACTGGTGTCTTCGATCTACTTCGCTGCCAATACAA-
1 CTACTCCACTGCTGCTT-AGGAAGATAAGGCTGGTGTTTTCGATCTGCTTCACTGCCAGTA-AAG
* *
51237612 GAAGACAAGATCTACTATCTTCAACCTACTCCACAACTGTTCAAGGAGATAAGGTTTGTTATTTC
64 GAAGACAAGATCTACAATCTTCAACCTACTCCACAACTGCTCAAGGAGATAAGGTTTGTTATTTC
**
51237677 GATCTGCTTCACTGTTAATACAAGAAGACAAGATCTACAATCTTAAACCTACTGAAAC
129 GATCTGCTTCACTGCCAATACAAGAAGACAAGATCTACAATC-T-----T-C---AAC
51237735 CTACTCCACTGCTGCTTAGGAAGATAAGGCTGGTGTTTTCGATCTGCTTCACTGCCAGTAAAGGA
1 CTACTCCACTGCTGCTTAGGAAGATAAGGCTGGTGTTTTCGATCTGCTTCACTGCCAGTAAAGGA
** * *
51237800 AGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGTTTGTTATTTTGA
66 AGACAAGATCTACAATCTTCAACCTACTCCACAACTGCTCAAGGAGATAAGGTTTGTTATTTCGA
* * **
51237865 TCTGCTTCATTGCCAATACAGGAAGACAAGATCTGTAATCTTCAAC
131 TCTGCTTCACTGCCAATACAAGAAGACAAGATCTACAATCTTCAAC
* *
51237911 CTACTCCACTGCTGCTCAGGAAGATAAGGCTGGTGTTTTCGATCTGCTTCACTGCCAGTACAGGA
1 CTACTCCACTGCTGCTTAGGAAGATAAGGCTGGTGTTTTCGATCTGCTTCACTGCCAGTAAAGGA
51237976 AG
66 AG
51237978 GCTTCACTGC
Statistics
Matches: 222, Mismatches: 19, Indels: 14
0.87 0.07 0.05
Matches are distributed among these distances:
176 68 0.31
179 1 0.00
180 1 0.00
185 6 0.03
186 146 0.66
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (176 bp):
CTACTCCACTGCTGCTTAGGAAGATAAGGCTGGTGTTTTCGATCTGCTTCACTGCCAGTAAAGGA
AGACAAGATCTACAATCTTCAACCTACTCCACAACTGCTCAAGGAGATAAGGTTTGTTATTTCGA
TCTGCTTCACTGCCAATACAAGAAGACAAGATCTACAATCTTCAAC
Found at i:51237975 original size:44 final size:44
Alignment explanation
Indices: 51237752--51237977 Score: 113
Period size: 44 Copynumber: 5.1 Consensus size: 44
51237742 ACTGCTGCTT
* *
51237752 AGGAAGATAAGGCTGGTGTTTTCGATCTGCTTCACTGCCAGTAA
1 AGGAAGATAAGGCTGGTATTTTCGATCTGCTTCACTGCCAGTAC
* * *** * * * * * *
51237796 AGGAAGACAAGATCTACAATCTTCAACCTACTCCACTG-CTGCT-C
1 AGGAAGATAAG-GCTGGTATTTTCGATCTGCTTCACTGCCAG-TAC
* * * * *
51237840 AGGGAGATAAGGTTTGTTATTTT-GATCTGCTTCATTGCCAATAC
1 AGGAAGATAAGG-CTGGTATTTTCGATCTGCTTCACTGCCAGTAC
* * * * * * * *
51237884 AGGAAGACAAGATCT-GTAATCTTCAACCTACTCCACTG-CTGCT-C
1 AGGAAGATAAG-GCTGGT-ATTTTCGATCTGCTTCACTGCCAG-TAC
*
51237928 AGGAAGATAAGGCTGGTGTTTTCGATCTGCTTCACTGCCAGTAC
1 AGGAAGATAAGGCTGGTATTTTCGATCTGCTTCACTGCCAGTAC
51237972 AGGAAG
1 AGGAAG
51237978 GCTTCACTGC
Statistics
Matches: 120, Mismatches: 50, Indels: 24
0.62 0.26 0.12
Matches are distributed among these distances:
43 28 0.23
44 65 0.54
45 27 0.22
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (44 bp):
AGGAAGATAAGGCTGGTATTTTCGATCTGCTTCACTGCCAGTAC
Found at i:51237984 original size:22 final size:22
Alignment explanation
Indices: 51237956--51237999 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
51237946 TTTTCGATCT
51237956 GCTTCACTGCCAGTACAGGAAG
1 GCTTCACTGCCAGTACAGGAAG
51237978 GCTTCACTGCCAGTACAGGAAG
1 GCTTCACTGCCAGTACAGGAAG
51238000 ACAAGATCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.18
Consensus pattern (22 bp):
GCTTCACTGCCAGTACAGGAAG
Found at i:51238061 original size:110 final size:110
Alignment explanation
Indices: 51237868--51238087 Score: 368
Period size: 110 Copynumber: 2.0 Consensus size: 110
51237858 ATTTTGATCT
*
51237868 GCTTCATTGCCAATACAGGAAGACAAGATCTGTAATCTTCAACCTACTCCACTGCTGCTCAGGAA
1 GCTTCACTGCCAATACAGGAAGACAAGATCTGTAATCTTCAACCTACTCCACTGCTGCTCAGGAA
* *
51237933 GATAAGGCTGGTGTTTTCGATCTGCTTCACTGCCAGTACAGGAAG
66 AATAAGACTGGTGTTTTCGATCTGCTTCACTGCCAGTACAGGAAG
* * *
51237978 GCTTCACTGCCAGTACAGGAAGACAAGATCTGTAATCTTTAACCTACTCCACTGCTGTTCAGGAA
1 GCTTCACTGCCAATACAGGAAGACAAGATCTGTAATCTTCAACCTACTCCACTGCTGCTCAGGAA
* *
51238043 AATAAGACTGGTGTTTTCGATCTGCTTCATTGCTAGTACAGGAAG
66 AATAAGACTGGTGTTTTCGATCTGCTTCACTGCCAGTACAGGAAG
51238088 ACAAGATCTA
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
110 102 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (110 bp):
GCTTCACTGCCAATACAGGAAGACAAGATCTGTAATCTTCAACCTACTCCACTGCTGCTCAGGAA
AATAAGACTGGTGTTTTCGATCTGCTTCACTGCCAGTACAGGAAG
Found at i:51238118 original size:198 final size:198
Alignment explanation
Indices: 51237780--51238175 Score: 614
Period size: 198 Copynumber: 2.0 Consensus size: 198
51237770 TTTTCGATCT
*
51237780 GCTTCACTGCCAGTAAAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGA
1 GCTTCACTGCCAGTAAAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGAA
* ** * * ** *
51237845 GATAAGGTTTGTTATTTTGATCTGCTTCATTGCCAATACAGGAAGACAAGATCTGTAATCTTCAA
66 AATAAGACTGGTTATTTCGATCTGCTTCATTGCCAATACAGGAAGACAAGATCTACAATATTCAA
*
51237910 CCTACTCCACTGCTGCTCAGGAAGATAAGGCTGGTGTTTTCGATCTGCTTCACTGCCAGTACAGG
131 CCTACTCCACTGCTGCTCAGGAAGATAAGGCTGGTGTTTTCGATCTACTTCACTGCCAGTACAGG
51237975 AAG
196 AAG
* ** * *
51237978 GCTTCACTGCCAGTACAGGAAGACAAGATCTGTAATCTTTAACCTACTCCACTGCTGTTCAGGAA
1 GCTTCACTGCCAGTAAAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGAA
* *
51238043 AATAAGACTGGTGT-TTTCGATCTGCTTCATTGCTAGTACAGGAAGACAAGATCTACAATATTCA
66 AATAAGACTGGT-TATTTCGATCTGCTTCATTGCCAATACAGGAAGACAAGATCTACAATATTCA
*
51238107 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGTGTTTTCGATCTACTTCACTGCCAGTACAG
130 ACCTACTCCACTGCTGCTCAGGAAGATAAGGCTGGTGTTTTCGATCTACTTCACTGCCAGTACAG
51238172 GAAG
195 GAAG
51238176 ACAAAATCTA
Statistics
Matches: 179, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
198 178 0.99
199 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (198 bp):
GCTTCACTGCCAGTAAAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGAA
AATAAGACTGGTTATTTCGATCTGCTTCATTGCCAATACAGGAAGACAAGATCTACAATATTCAA
CCTACTCCACTGCTGCTCAGGAAGATAAGGCTGGTGTTTTCGATCTACTTCACTGCCAGTACAGG
AAG
Found at i:51238128 original size:88 final size:88
Alignment explanation
Indices: 51237978--51238189 Score: 316
Period size: 88 Copynumber: 2.4 Consensus size: 88
51237968 GTACAGGAAG
** * * *
51237978 GCTTCACTGCCAGTACAGGAAGACAAGATCTGTAATCTTTAACCTACTCCACTGCTGTTCAGGAA
1 GCTTCACTGCCAGTACAGGAAGACAAGATCTACAATATTCAACCTACTCCACTGCTGCTCAGGAA
51238043 AATAAGACTGGTGTTTTCGATCT
66 AATAAGACTGGTGTTTTCGATCT
* * *
51238066 GCTTCATTGCTAGTACAGGAAGACAAGATCTACAATATTCAACCTACTCCACTGCTGCTCAGGGA
1 GCTTCACTGCCAGTACAGGAAGACAAGATCTACAATATTCAACCTACTCCACTGCTGCTCAGGAA
* *
51238131 GATAAGGCTGGTGTTTTCGATCT
66 AATAAGACTGGTGTTTTCGATCT
* *
51238154 ACTTCACTGCCAGTACAGGAAGACAAAATCTACAAT
1 GCTTCACTGCCAGTACAGGAAGACAAGATCTACAAT
51238190 CTTCTTCAAT
Statistics
Matches: 110, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 110 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27
Consensus pattern (88 bp):
GCTTCACTGCCAGTACAGGAAGACAAGATCTACAATATTCAACCTACTCCACTGCTGCTCAGGAA
AATAAGACTGGTGTTTTCGATCT
Found at i:51240250 original size:45 final size:46
Alignment explanation
Indices: 51240183--51240306 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
51240173 CATATGACCT
*
51240183 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
51240226 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
51240272 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
51240307 CACTTATCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.11
44 4 0.05
45 21 0.28
46 41 0.55
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:51240289 original size:46 final size:45
Alignment explanation
Indices: 51240183--51240380 Score: 207
Period size: 37 Copynumber: 4.8 Consensus size: 45
51240173 CATATGACCT
*
51240183 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
51240226 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCA
*
51240272 CTTATCACTTTATCACTTGATCAGATAA--GT-G-T-AG---CCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
51240309 CTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
51240346 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
51240381 CACTTATCAC
Statistics
Matches: 140, Mismatches: 7, Indels: 18
0.85 0.04 0.11
Matches are distributed among these distances:
37 64 0.46
39 2 0.01
40 3 0.02
42 1 0.01
43 9 0.06
44 6 0.04
45 21 0.15
46 34 0.24
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (45 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
Found at i:51240310 original size:37 final size:37
Alignment explanation
Indices: 51240269--51240407 Score: 233
Period size: 37 Copynumber: 3.8 Consensus size: 37
51240259 GCTGAAGCTA
* *
51240269 CCACTTATCACTTTATCACTTGATCAGATAAGTGTAG
1 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAG
*
51240306 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAA
1 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAG
*
51240343 CCACTTATCACTTTGTTTCTTGATCAGATAAGTGTAG
1 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAG
*
51240380 CCACTTATCACTTTGTTTCTTGATCAGA
1 CCACTTATCACTTTGTCTCTTGATCAGA
51240408 AGTACTCAAA
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.39
Consensus pattern (37 bp):
CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAG
Found at i:51247909 original size:45 final size:46
Alignment explanation
Indices: 51247842--51247965 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
51247832 CATATGACCT
*
51247842 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
51247885 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
51247931 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
51247966 CACTTATCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.11
44 4 0.05
45 21 0.28
46 41 0.55
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:51247948 original size:46 final size:45
Alignment explanation
Indices: 51247842--51248076 Score: 207
Period size: 37 Copynumber: 5.8 Consensus size: 45
51247832 CATATGACCT
*
51247842 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
51247885 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCA
*
51247931 CTTATCACTTTATCACTTGATCAGATAA--GT-G-T-AG---CCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
51247968 CTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
51248005 CTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
51248042 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
51248077 CACTTATCAC
Statistics
Matches: 177, Mismatches: 7, Indels: 18
0.88 0.03 0.09
Matches are distributed among these distances:
37 101 0.57
39 2 0.01
40 3 0.02
42 1 0.01
43 9 0.05
44 6 0.03
45 21 0.12
46 34 0.19
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (45 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
Found at i:51247969 original size:37 final size:37
Alignment explanation
Indices: 51247927--51248103 Score: 300
Period size: 37 Copynumber: 4.8 Consensus size: 37
51247917 AGCTGAAGCT
* **
51247927 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
* *
51247964 GCCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
51248001 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
51248038 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
*
51248075 GCCACTTATCACTTTGTTTCTTGATCAGA
1 ACCACTTATCACTTTGTTTCTTGATCAGA
51248104 AGTACTCAAA
Statistics
Matches: 134, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
Found at i:51252597 original size:15 final size:15
Alignment explanation
Indices: 51252552--51252599 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
51252542 CCAATATCTC
51252552 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
51252567 GACTTTCCAT-TATTT
1 GA-TACCCATATCTTT
51252582 GATACCCATATCTTT
1 GATACCCATATCTTT
51252597 GAT
1 GAT
51252600 TTTCCATAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
14 5 0.20
15 15 0.60
16 5 0.20
ACGTcount: A:0.25, C:0.23, G:0.08, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:51253969 original size:14 final size:15
Alignment explanation
Indices: 51253944--51253972 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
51253934 TTTTTCTTAA
51253944 TTTGGTGTCTAATTT
1 TTTGGTGTCTAATTT
51253959 TTTGG-GTCTAATTT
1 TTTGGTGTCTAATTT
51253973 GGTACTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.14, C:0.07, G:0.21, T:0.59
Consensus pattern (15 bp):
TTTGGTGTCTAATTT
Found at i:51254497 original size:31 final size:31
Alignment explanation
Indices: 51254462--51254527 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
51254452 ACCAACTTAA
51254462 GAAAAAGGGTCAAGTTT-ACATACCAAATTTT
1 GAAAAAGGGTCAAGTTTGA-ATACCAAATTTT
** *
51254493 GAAAAATTGTCAAGTTTGAATGCCAAATTTT
1 GAAAAAGGGTCAAGTTTGAATACCAAATTTT
51254524 -AAAA
1 GAAAA
51254528 CAAAAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 4 0.13
31 26 0.84
32 1 0.03
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (31 bp):
GAAAAAGGGTCAAGTTTGAATACCAAATTTT
Found at i:51257646 original size:17 final size:18
Alignment explanation
Indices: 51257626--51257659 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
51257616 ATTATAAACA
*
51257626 TTAACTAATAT-TTATTT
1 TTAAATAATATCTTATTT
51257643 TTAAATAATATCTTATT
1 TTAAATAATATCTTATT
51257660 ATTAGCCGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (18 bp):
TTAAATAATATCTTATTT
Found at i:51279097 original size:25 final size:25
Alignment explanation
Indices: 51278998--51279085 Score: 158
Period size: 25 Copynumber: 3.5 Consensus size: 25
51278988 TATATATATT
* *
51278998 CGCACACATAGTGCCATAAAATTTC
1 CGCACACTTAGTGCCATACAATTTC
51279023 CGCACACTTAGTGCCATACAATTTC
1 CGCACACTTAGTGCCATACAATTTC
51279048 CGCACACTTAGTGCCATACAATTTC
1 CGCACACTTAGTGCCATACAATTTC
51279073 CGCACACTTAGTG
1 CGCACACTTAGTG
51279086 TCAAGTCATT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 61 1.00
ACGTcount: A:0.30, C:0.31, G:0.14, T:0.26
Consensus pattern (25 bp):
CGCACACTTAGTGCCATACAATTTC
Found at i:51295976 original size:31 final size:31
Alignment explanation
Indices: 51295941--51296004 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
51295931 AGCTGAAAAT
51295941 TAACCAACAGTCTTGAAAACTAATTAACTGA
1 TAACCAACAGTCTTGAAAACTAATTAACTGA
*
51295972 TAACCAACAGTCTTGAAGACTAATTAACTGA
1 TAACCAACAGTCTTGAAAACTAATTAACTGA
51296003 TA
1 TA
51296005 CGTGAAACAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.44, C:0.19, G:0.11, T:0.27
Consensus pattern (31 bp):
TAACCAACAGTCTTGAAAACTAATTAACTGA
Found at i:51296808 original size:13 final size:13
Alignment explanation
Indices: 51296790--51296816 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51296780 TTTGTTTACC
51296790 TCAAGTTATATTT
1 TCAAGTTATATTT
51296803 TCAAGTTATATTT
1 TCAAGTTATATTT
51296816 T
1 T
51296817 AATCATTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56
Consensus pattern (13 bp):
TCAAGTTATATTT
Found at i:51304228 original size:25 final size:26
Alignment explanation
Indices: 51304185--51304240 Score: 87
Period size: 25 Copynumber: 2.2 Consensus size: 26
51304175 AAATATAGTG
* *
51304185 ATAAATTTAAATTATATTAATATTAA
1 ATAAATTTAAATTATATTAAAATAAA
51304211 ATAAATTT-AATTATATTAAAATAAA
1 ATAAATTTAAATTATATTAAAATAAA
51304236 ATAAA
1 ATAAA
51304241 AATCCACCAC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
25 20 0.71
26 8 0.29
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (26 bp):
ATAAATTTAAATTATATTAAAATAAA
Found at i:51329525 original size:21 final size:21
Alignment explanation
Indices: 51329499--51329540 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
51329489 TAGTCACCTG
51329499 GAAAGAGTAGGCAGACAGCGT
1 GAAAGAGTAGGCAGACAGCGT
*
51329520 GAAAGAGTGGGCAGACAGCGT
1 GAAAGAGTAGGCAGACAGCGT
51329541 TTTACTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.14, G:0.40, T:0.10
Consensus pattern (21 bp):
GAAAGAGTAGGCAGACAGCGT
Found at i:51333001 original size:60 final size:60
Alignment explanation
Indices: 51332906--51333065 Score: 214
Period size: 60 Copynumber: 2.7 Consensus size: 60
51332896 GCTCCAAAGT
* * * *
51332906 TCTCCCAACTATTCCAGCTTCTTTTCTAGATTCAGCAGCCGGTTGGCTTGGCTCTAAA-C
1 TCTCCCAGCTATTCCAACTTCTTTTCTAGATTCAGCAGCCAGTTGACTTGGCTCTAAATC
* *
51332965 TCTTCCCAGCTATTCCAACTTCTTTTCTAGATTCAGCAGCAAGTTGACTTGGCTCTAAATT
1 TC-TCCCAGCTATTCCAACTTCTTTTCTAGATTCAGCAGCCAGTTGACTTGGCTCTAAATC
* * * *
51333026 TCTCCCAGTTATTCCAACTTCGTTTCTTGAATCAGCAGCC
1 TCTCCCAGCTATTCCAACTTCTTTTCTAGATTCAGCAGCC
51333066 TGCTCCACAC
Statistics
Matches: 88, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
59 2 0.02
60 84 0.95
61 2 0.02
ACGTcount: A:0.21, C:0.29, G:0.14, T:0.36
Consensus pattern (60 bp):
TCTCCCAGCTATTCCAACTTCTTTTCTAGATTCAGCAGCCAGTTGACTTGGCTCTAAATC
Found at i:51333103 original size:51 final size:51
Alignment explanation
Indices: 51333025--51333123 Score: 162
Period size: 51 Copynumber: 1.9 Consensus size: 51
51333015 GGCTCTAAAT
* *
51333025 TTCTCCCAGTTATTCCAACTTCGTTTCTTGAATCAGCAGCCTGCTCCACAC
1 TTCTCCCAGATATTCCAACTTCGTTTCTTGAATCAGCAGCCTGATCCACAC
* *
51333076 TTCTCCCAGATATTCCAACTTCTTTTCTTGATTCAGCAGCCTGATCCA
1 TTCTCCCAGATATTCCAACTTCGTTTCTTGAATCAGCAGCCTGATCCA
51333124 ACCTAGCATC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.20, C:0.33, G:0.11, T:0.35
Consensus pattern (51 bp):
TTCTCCCAGATATTCCAACTTCGTTTCTTGAATCAGCAGCCTGATCCACAC
Found at i:51339577 original size:29 final size:30
Alignment explanation
Indices: 51339514--51339579 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
51339504 TAGTGATTTA
51339514 ATATAAATATATATAATAATTATTTAACAT
1 ATATAAATATATATAATAATTATTTAACAT
* * *
51339544 ATATAATTA-ATATAATATTTTTTATAACATT
1 ATATAAATATATATAATAATTATT-TAACA-T
51339575 ATATA
1 ATATA
51339580 TTCGAGTTGG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 12 0.39
30 13 0.42
31 6 0.19
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (30 bp):
ATATAAATATATATAATAATTATTTAACAT
Found at i:51343599 original size:175 final size:174
Alignment explanation
Indices: 51343354--51343832 Score: 744
Period size: 175 Copynumber: 2.7 Consensus size: 174
51343344 ACACGCTCTC
* * *
51343354 CTCTACTGTAATTTCAAAGAAATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGCAG
1 CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGG-AG
* * *
51343419 ATAGGATTACTATCTTCAATCTACTCCGCTGTAATCTTAAGGTGATAAGATCTGAAATTCTTTGG
65 ATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTTAAGGAGATAAGATCTGAAATTCTTCGG
* *
51343484 TCTGTTCCACTGTAATCTCAGGGAAATAGGACCTGGTGCGATCTA
130 TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTAGTGCGATCTA
* *
51343529 CTTTACTGTAACTTCAGAGAGATAAGATCCTTTATTCTAATCCACTCCACTGTAATCTCAGAGAG
1 CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAG-GAG
* * * *
51343594 ATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGG
65 ATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTTAAGGAGATAAGATCTGAAATTCTTCGG
*
51343659 TCTGTTCCACTGTAATCTCAGGGGAATAAGACCTAGTGCGATCTA
130 TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTAGTGCGATCTA
** *
51343704 CTCTACTGTAACTTCAGAGAGATAAGATCCTTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAG
1 CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCA-GGAG
*
51343769 ATAGGATTACCAGCTTCAATCTACTCCGCTGTAATC-TAAGGGAGATAAGATCTGAAATTCTTCG
65 ATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTTAA-GGAGATAAGATCTGAAATTCTTCG
51343833 ATCTACTTCG
Statistics
Matches: 276, Mismatches: 25, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
174 1 0.00
175 273 0.99
176 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (174 bp):
CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGAGA
TAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTTAAGGAGATAAGATCTGAAATTCTTCGGT
CTGTTCCACTGTAATCTCAGGGAAATAAGACCTAGTGCGATCTA
Found at i:51343626 original size:44 final size:44
Alignment explanation
Indices: 51343573--51343819 Score: 175
Period size: 44 Copynumber: 5.6 Consensus size: 44
51343563 TTCTAATCCA
* *
51343573 CTCCACTGTAATCTCAGAGAGATAGGATTACTAGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTG
* * * **
51343617 CTCCGCTGTAATCTCAGGGAGATAAGATTTGA-AATTCTTCGGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGA-TT-ACTA-GCTTCAATCTG
* * * * *
51343663 TTCCACTGTAATCTCAGGG-GAATAAGA--CCTAG-TGCGATCTA
1 CTCCACTGTAATCTCAGGGAG-ATAAGATTACTAGCTTCAATCTG
* * * * * * *
51343704 CTCTACTGTAA-CTTCAGAGAGATAAGA-TCCTTGGTTTTAATCCG
1 CTCCACTGTAATC-TCAGGGAGATAAGATTAC-TAGCTTCAATCTG
* * *
51343748 CTCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTG
* *
51343792 CTCCGCTGTAATCTAAGGGAGATAAGAT
1 CTCCACTGTAATCTCAGGGAGATAAGAT
51343820 CTGAAATTCT
Statistics
Matches: 154, Mismatches: 37, Indels: 24
0.72 0.17 0.11
Matches are distributed among these distances:
40 1 0.01
41 26 0.17
42 3 0.02
43 3 0.02
44 82 0.53
45 7 0.05
46 32 0.21
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (44 bp):
CTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTG
Found at i:51345167 original size:11 final size:11
Alignment explanation
Indices: 51345144--51345180 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
51345134 CTCTCCAAAG
*
51345144 TTTTTT-TTGT
1 TTTTTTGTTTT
51345154 TTTTTTGTTTT
1 TTTTTTGTTTT
51345165 TTTTTTGTTTT
1 TTTTTTGTTTT
51345176 TTTTT
1 TTTTT
51345181 AGGAAGCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 6 0.24
11 19 0.76
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:51352660 original size:22 final size:22
Alignment explanation
Indices: 51352632--51352675 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
51352622 TAGATCAGCC
*
51352632 TGAACCGCTAGAGTTTGCAGAT
1 TGAACCGCTAGAGTCTGCAGAT
51352654 TGAACCGCTAGAGTCTGCAGAT
1 TGAACCGCTAGAGTCTGCAGAT
51352676 GATCAGTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (22 bp):
TGAACCGCTAGAGTCTGCAGAT
Found at i:51358865 original size:20 final size:20
Alignment explanation
Indices: 51358842--51358888 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 20
51358832 AAATTTTTAA
51358842 AAAATAATAAAAATTATTTT
1 AAAATAATAAAAATTATTTT
* * *
51358862 AAAAT-TTAACAATTTTTTT
1 AAAATAATAAAAATTATTTT
51358881 AAAA-AATA
1 AAAATAATA
51358889 TATCCAAGCC
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
AAAATAATAAAAATTATTTT
Found at i:51366247 original size:12 final size:12
Alignment explanation
Indices: 51366230--51366255 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51366220 CAGCTCGCAG
51366230 AAATCGTAGAGA
1 AAATCGTAGAGA
51366242 AAATCGTAGAGA
1 AAATCGTAGAGA
51366254 AA
1 AA
51366256 CAAGGCAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.08, G:0.23, T:0.15
Consensus pattern (12 bp):
AAATCGTAGAGA
Found at i:51369818 original size:4 final size:4
Alignment explanation
Indices: 51369804--51369854 Score: 61
Period size: 4 Copynumber: 12.8 Consensus size: 4
51369794 AGCCACCCTT
*
51369804 TTTA TTTTA TTTA TTTA TTTA TTTA -TTA -TTA TTTG TTATA TTTA TTTA
1 TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TTTA TTTA
51369852 TTT
1 TTT
51369855 TTATTATACT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
3 6 0.14
4 29 0.69
5 7 0.17
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:51369869 original size:23 final size:22
Alignment explanation
Indices: 51369804--51369869 Score: 71
Period size: 23 Copynumber: 3.0 Consensus size: 22
51369794 AGCCACCCTT
*
51369804 TTTA-TTTTATTTATTTATTTA
1 TTTATTTTTATTTATTAATTTA
* *
51369825 TTTATTATTATTTGTTATATTTA
1 TTTATTTTTATTTATTA-ATTTA
*
51369848 TTTATTTTTATTATACTAATTT
1 TTTATTTTTATT-TATTAATTT
51369870 TTCTTATACT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 4 0.11
22 9 0.25
23 20 0.56
24 3 0.08
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.71
Consensus pattern (22 bp):
TTTATTTTTATTTATTAATTTA
Found at i:51382400 original size:21 final size:21
Alignment explanation
Indices: 51382367--51382406 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
51382357 AAAATTTAGG
* *
51382367 ATATTAAATTAATTAATTTCA
1 ATATTAAAGTAATGAATTTCA
*
51382388 ATATTACAGTAATGAATTT
1 ATATTAAAGTAATGAATTT
51382407 AGAAGGGATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (21 bp):
ATATTAAAGTAATGAATTTCA
Found at i:51390144 original size:38 final size:38
Alignment explanation
Indices: 51390102--51390192 Score: 128
Period size: 40 Copynumber: 2.3 Consensus size: 38
51390092 GTCCAACCCA
51390102 ACACACCATGTGGGGATAAAATCGACCCACCCAGCCCT
1 ACACACCATGTGGGGATAAAATCGACCCACCCAGCCCT
* * *
51390140 ACACACCAAGTATAGGGATAAAATCGACCCATCCAGCCCT
1 ACACACC-A-TGTGGGGATAAAATCGACCCACCCAGCCCT
*
51390180 ACACACCAAGTGG
1 ACACACCATGTGG
51390193 TACTGTGATA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
38 9 0.20
39 2 0.04
40 34 0.76
ACGTcount: A:0.35, C:0.34, G:0.18, T:0.13
Consensus pattern (38 bp):
ACACACCATGTGGGGATAAAATCGACCCACCCAGCCCT
Found at i:51390161 original size:40 final size:40
Alignment explanation
Indices: 51390114--51390190 Score: 145
Period size: 40 Copynumber: 1.9 Consensus size: 40
51390104 ACACCATGTG
51390114 GGGATAAAATCGACCCACCCAGCCCTACACACCAAGTATA
1 GGGATAAAATCGACCCACCCAGCCCTACACACCAAGTATA
*
51390154 GGGATAAAATCGACCCATCCAGCCCTACACACCAAGT
1 GGGATAAAATCGACCCACCCAGCCCTACACACCAAGT
51390191 GGTACTGTGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.36, C:0.35, G:0.16, T:0.13
Consensus pattern (40 bp):
GGGATAAAATCGACCCACCCAGCCCTACACACCAAGTATA
Found at i:51397169 original size:40 final size:40
Alignment explanation
Indices: 51397123--51397201 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
51397113 ACACACCATG
51397123 TGGGGATAAAATCAACCCACCCAACCCTACAAACCAAGTA
1 TGGGGATAAAATCAACCCACCCAACCCTACAAACCAAGTA
* * * *
51397163 TGGGGATAAAATCGACCCATCCAGCCCTACACACCAAGT
1 TGGGGATAAAATCAACCCACCCAACCCTACAAACCAAGT
51397202 GGTACTGCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.38, C:0.33, G:0.15, T:0.14
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCACCCAACCCTACAAACCAAGTA
Found at i:51397977 original size:56 final size:56
Alignment explanation
Indices: 51397903--51398013 Score: 168
Period size: 56 Copynumber: 2.0 Consensus size: 56
51397893 ATCTTCTTAT
51397903 CTTCGACGAAAAACGGTGTTTCCTTACTGTTTAAAACCCCGATTAATGATCCACAC
1 CTTCGACGAAAAACGGTGTTTCCTTACTGTTTAAAACCCCGATTAATGATCCACAC
* * * * * *
51397959 CTTCGATGAACAATGGTGTTTCTTTGCTGTTTAGAACCCCGATTAATGATCCACA
1 CTTCGACGAAAAACGGTGTTTCCTTACTGTTTAAAACCCCGATTAATGATCCACA
51398014 GATCATTGAA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (56 bp):
CTTCGACGAAAAACGGTGTTTCCTTACTGTTTAAAACCCCGATTAATGATCCACAC
Found at i:51399348 original size:21 final size:22
Alignment explanation
Indices: 51399307--51399454 Score: 113
Period size: 23 Copynumber: 6.6 Consensus size: 22
51399297 GCTATCACCC
* *
51399307 ACCAATCATAGCCTCAG-ACACA
1 ACCAAT-ATACCCTCCGAACACA
*
51399329 ACCAATTTACCCTCC-AACACA
1 ACCAATATACCCTCCGAACACA
* *
51399350 ACC-ATGTATCCTCCGAACACA
1 ACCAATATACCCTCCGAACACA
* *
51399371 ACCAAATATACCCTTCAAACACA
1 ACC-AATATACCCTCCGAACACA
*
51399394 ACCATATATATAACCTCCGAACACA
1 ACC--A-ATATACCCTCCGAACACA
* * *
51399419 ACCAAGTATACCCACCAAATACA
1 ACCAA-TATACCCTCCGAACACA
*
51399442 ACTAATATACCCT
1 ACCAATATACCCT
51399455 TCAACATATC
Statistics
Matches: 100, Mismatches: 19, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
20 9 0.09
21 23 0.23
22 14 0.14
23 35 0.35
24 1 0.01
25 18 0.18
ACGTcount: A:0.42, C:0.36, G:0.04, T:0.18
Consensus pattern (22 bp):
ACCAATATACCCTCCGAACACA
Found at i:51399417 original size:48 final size:43
Alignment explanation
Indices: 51399324--51399431 Score: 128
Period size: 48 Copynumber: 2.4 Consensus size: 43
51399314 ATAGCCTCAG
* * *
51399324 ACACAACC-AATTTACCCTCCAACACAACCATGTATCCTCCGA
1 ACACAACCAAATATACCCTCAAACACAACCATATATCCTCCGA
51399366 ACACAACCAAATATACCCTTCAAACACAACCATATATATAACCTCCGA
1 ACACAACCAAATATACCC-TCAAACACAACC--ATATAT--CCTCCGA
*
51399414 ACACAACCAAGTATACCC
1 ACACAACCAAATATACCC
51399432 ACCAAATACA
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 8 0.14
43 8 0.14
44 11 0.20
46 5 0.09
48 24 0.43
ACGTcount: A:0.42, C:0.37, G:0.04, T:0.18
Consensus pattern (43 bp):
ACACAACCAAATATACCCTCAAACACAACCATATATCCTCCGA
Found at i:51405454 original size:42 final size:42
Alignment explanation
Indices: 51405389--51405544 Score: 169
Period size: 42 Copynumber: 3.7 Consensus size: 42
51405379 AAATCGTACA
*
51405389 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
*
51405431 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATC-AATATCG
* * *
51405473 ATGCCGATGTCCCAGACATGGTCTTATACAT-AAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTC-T-TACATGAAA--TCAATATCG
51405517 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
51405545 CGATAACATA
Statistics
Matches: 96, Mismatches: 8, Indels: 20
0.77 0.06 0.16
Matches are distributed among these distances:
41 2 0.02
42 51 0.53
43 14 0.15
44 27 0.28
45 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
Found at i:51407050 original size:32 final size:32
Alignment explanation
Indices: 51407002--51407086 Score: 154
Period size: 32 Copynumber: 2.7 Consensus size: 32
51406992 ACCTAAAATT
51407002 ATTAATTC-TAATTATTTTAATATTTTATTTA
1 ATTAATTCTTAATTATTTTAATATTTTATTTA
51407033 ATTAATTCTTAATTATTTTAATATTTTATTTA
1 ATTAATTCTTAATTATTTTAATATTTTATTTA
*
51407065 TTTAATTCTTAATTATTTTAAT
1 ATTAATTCTTAATTATTTTAAT
51407087 TATCTAATAT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
31 8 0.15
32 44 0.85
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (32 bp):
ATTAATTCTTAATTATTTTAATATTTTATTTA
Found at i:51407053 original size:16 final size:16
Alignment explanation
Indices: 51407003--51407087 Score: 86
Period size: 16 Copynumber: 5.4 Consensus size: 16
51406993 CCTAAAATTA
51407003 TTAATTC-TAATTATT
1 TTAATTCTTAATTATT
* * *
51407018 TTAATATTTTATTTA-A
1 TTAAT-TCTTAATTATT
51407034 TTAATTCTTAATTATT
1 TTAATTCTTAATTATT
* *
51407050 TTAATATTTTATTTA-T
1 TTAAT-TCTTAATTATT
51407066 TTAATTCTTAATTATT
1 TTAATTCTTAATTATT
51407082 TTAATT
1 TTAATT
51407088 ATCTAATATA
Statistics
Matches: 55, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
15 19 0.35
16 24 0.44
17 12 0.22
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.64
Consensus pattern (16 bp):
TTAATTCTTAATTATT
Found at i:51407083 original size:24 final size:23
Alignment explanation
Indices: 51407050--51407094 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
51407040 CTTAATTATT
* *
51407050 TTAATATTTTATTTATTTAATTC
1 TTAATATTTTAATTATCTAATTC
51407073 TTAATTATTTTAATTATCTAAT
1 TTAA-TATTTTAATTATCTAAT
51407095 ATAATTATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (23 bp):
TTAATATTTTAATTATCTAATTC
Found at i:51407085 original size:9 final size:9
Alignment explanation
Indices: 51407010--51407089 Score: 60
Period size: 9 Copynumber: 8.8 Consensus size: 9
51407000 TTATTAATTC
51407010 TAATTATTT
1 TAATTATTT
*
51407019 TAATATTTTATT
1 T-A-ATTAT-TT
51407031 TAATTAATTCT
1 TAATT-ATT-T
51407042 TAATTATTT
1 TAATTATTT
51407051 TAA-TATTT
1 TAATTATTT
*
51407059 TATTTA-TT
1 TAATTATTT
*
51407067 TAA-T-TCT
1 TAATTATTT
51407074 TAATTATTT
1 TAATTATTT
51407083 TAATTAT
1 TAATTAT
51407090 CTAATATAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 18
0.70 0.08 0.22
Matches are distributed among these distances:
7 5 0.09
8 12 0.21
9 16 0.29
10 8 0.14
11 12 0.21
12 3 0.05
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.64
Consensus pattern (9 bp):
TAATTATTT
Found at i:51413831 original size:58 final size:58
Alignment explanation
Indices: 51413766--51413882 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
51413756 GAAAGAGAAA
51413766 GGGAAAGAGGGTGGTGAAGTGAAAGGTGGGCATGGGGATGTAGAGGAACATGGATGAT
1 GGGAAAGAGGGTGGTGAAGTGAAAGGTGGGCATGGGGATGTAGAGGAACATGGATGAT
51413824 GGGAAAGAGGGTGGTGAAGTGAAAGGTGGGCATGGGGATGTAGAGGAACATGGATGAT
1 GGGAAAGAGGGTGGTGAAGTGAAAGGTGGGCATGGGGATGTAGAGGAACATGGATGAT
51413882 G
1 G
51413883 AGGTAGAGTG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.31, C:0.03, G:0.49, T:0.17
Consensus pattern (58 bp):
GGGAAAGAGGGTGGTGAAGTGAAAGGTGGGCATGGGGATGTAGAGGAACATGGATGAT
Found at i:51416854 original size:63 final size:63
Alignment explanation
Indices: 51416775--51416975 Score: 178
Period size: 63 Copynumber: 3.2 Consensus size: 63
51416765 ATTTTAAAGN
* * * * * *
51416775 CACACACCCGTCTCCCTGGCCTATGTGACCC-TAAATCCAAAATAGTGAGGTGCACGGCTTGGA
1 CACACGCCCGTGTCCCTAGCCTATGTGACCCAAAAAT-CAAAACAGTGAGGTACACGGCTTGGA
* * * * *
51416838 CACACGCTCGTGTCCCTAGCCTGTGTGACCCAAAAATCTAGACAGTGAGTTACACGGCTTGGA
1 CACACGCCCGTGTCCCTAGCCTATGTGACCCAAAAATCAAAACAGTGAGGTACACGGCTTGGA
* * * * *
51416901 CACACGCCCGTGTCTCTAG-CT-TGTGTACCTC-AAATTCCAAAACAGTGAGTTACATGGC-TAG
1 CACACGCCCGTGTCCCTAGCCTATGTG-ACC-CAAAAAT-CAAAACAGTGAGGTACACGGCTTGG
51416962 A
63 A
*
51416963 CACACGGCCGTGT
1 CACACGCCCGTGT
51416976 GGCGTCAAAA
Statistics
Matches: 115, Mismatches: 19, Indels: 9
0.80 0.13 0.06
Matches are distributed among these distances:
61 4 0.03
62 24 0.21
63 83 0.72
64 4 0.03
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.22
Consensus pattern (63 bp):
CACACGCCCGTGTCCCTAGCCTATGTGACCCAAAAATCAAAACAGTGAGGTACACGGCTTGGA
Found at i:51417476 original size:6 final size:6
Alignment explanation
Indices: 51417467--51417523 Score: 57
Period size: 6 Copynumber: 9.8 Consensus size: 6
51417457 TGAGAAAACC
* * *
51417467 AAAAAG AAAAAG --AAAG AAAAAG AAAAAG AAGGAAG AAGAAG AAGAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AA-AAAG AAAAAG AAAAAG
51417514 -AAAAG AAAAA
1 AAAAAG AAAAA
51417524 CTAACGTAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
4 4 0.09
5 4 0.09
6 32 0.71
7 5 0.11
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:51417488 original size:16 final size:16
Alignment explanation
Indices: 51417467--51417523 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 16
51417457 TGAGAAAACC
51417467 AAAAAGAAAAAGAAAG
1 AAAAAGAAAAAGAAAG
*
51417483 AAAAAGAAAAAGAAGG
1 AAAAAGAAAAAGAAAG
* *
51417499 AAGAAGAAGAAG-AAG
1 AAAAAGAAAAAGAAAG
51417514 -AAAAGAAAAA
1 AAAAAGAAAAA
51417524 CTAACGTAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
14 8 0.23
15 2 0.06
16 25 0.71
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAAAGAAAG
Found at i:51417506 original size:3 final size:3
Alignment explanation
Indices: 51417470--51417520 Score: 50
Period size: 3 Copynumber: 16.7 Consensus size: 3
51417460 GAAAACCAAA
* * *
51417470 AAG AAA AAG AAAG AAA AAG AAA AAG AAGG AAG AAG AAG AAG AAG AA-
1 AAG AAG AAG -AAG AAG AAG AAG AAG AA-G AAG AAG AAG AAG AAG AAG
51417516 AAG AA
1 AAG AA
51417521 AAACTAACGT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
2 2 0.05
3 31 0.79
4 6 0.15
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:51418526 original size:28 final size:29
Alignment explanation
Indices: 51418465--51418560 Score: 88
Period size: 28 Copynumber: 3.3 Consensus size: 29
51418455 CAAATTAATT
* * * *
51418465 TTTTTTTTATAATTTTAACATTTTTTTCTAA
1 TTTTTTCTATAATTTTAA-ATATCTTTAT-A
51418496 TTTTTTCTA-AATTTTAAATATCTTTATA
1 TTTTTTCTATAATTTTAAATATCTTTATA
* * *
51418524 TTTTTT-TATAATTTTGAATATTTTTATT
1 TTTTTTCTATAATTTTAAATATCTTTATA
51418552 TTCTTTTCT
1 TT-TTTTCT
51418561 GGATTTTTAT
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
27 2 0.04
28 25 0.45
29 11 0.20
30 9 0.16
31 8 0.15
ACGTcount: A:0.25, C:0.06, G:0.01, T:0.68
Consensus pattern (29 bp):
TTTTTTCTATAATTTTAAATATCTTTATA
Found at i:51420721 original size:79 final size:78
Alignment explanation
Indices: 51420585--51420742 Score: 237
Period size: 79 Copynumber: 2.0 Consensus size: 78
51420575 AAGGGTAGAC
* **
51420585 GGATCCCTGGGTATCCGGTTAAAGCCCCGTCGGAGATGGAGACACATTAGGTGTTGATGAAGACC
1 GGATCCCTGGGTATCCGATTAAAGCCCCGTCGGAGATGGAGACACATTAGGCATTGATGAAGACC
*
51420650 GCAAATCGGAAGA
66 ACAAATCGGAAGA
* *
51420663 NGGATCCCTGAGG-ATCCGATTAAAGCCCCGTCGGAGATGGAGACCCATTAGGCATTGATGAAGC
1 -GGATCCCTG-GGTATCCGATTAAAGCCCCGTCGGAGATGGAGACACATTAGGCATTGATGAAGA
51420727 CCACAAATCGGAAGA
64 CCACAAATCGGAAGA
51420742 G
1 G
51420743 AAGGGGACGA
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
78 1 0.01
79 69 0.96
80 2 0.03
ACGTcount: A:0.29, C:0.22, G:0.30, T:0.18
Consensus pattern (78 bp):
GGATCCCTGGGTATCCGATTAAAGCCCCGTCGGAGATGGAGACACATTAGGCATTGATGAAGACC
ACAAATCGGAAGA
Found at i:51421340 original size:17 final size:16
Alignment explanation
Indices: 51421304--51421342 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
51421294 CAAAGGATTC
* *
51421304 ATTATTCATTTTTTAT
1 ATTATTAATTTTTTAA
51421320 ATTATTAATTATTTTAA
1 ATTATTAATT-TTTTAA
51421337 ATTATT
1 ATTATT
51421343 TTAGGGTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (16 bp):
ATTATTAATTTTTTAA
Found at i:51421756 original size:23 final size:22
Alignment explanation
Indices: 51421730--51421778 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
51421720 AATTTCTTCT
* *
51421730 TTTTCGTATTATTCATTTTAACC
1 TTTTAGTATTATT-ATTTTAAAC
*
51421753 TTTTATTATTATTATTTTAAAC
1 TTTTAGTATTATTATTTTAAAC
51421775 TTTT
1 TTTT
51421779 TACATTTCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.24, C:0.10, G:0.02, T:0.63
Consensus pattern (22 bp):
TTTTAGTATTATTATTTTAAAC
Found at i:51421780 original size:23 final size:23
Alignment explanation
Indices: 51421736--51421778 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
51421726 TTCTTTTTCG
51421736 TATTATTCATTTTAACCTTTTAT
1 TATTATTCATTTTAACCTTTTAT
*
51421759 TATTATT-ATTTTAAACTTTT
1 TATTATTCATTTTAACCTTTT
51421779 TACATTTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.63
Consensus pattern (23 bp):
TATTATTCATTTTAACCTTTTAT
Found at i:51425445 original size:19 final size:18
Alignment explanation
Indices: 51425421--51425466 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
51425411 CGATGCCTTT
* *
51425421 TGCATTAATTTCATGCATC
1 TGCATTAATTACAT-CATA
51425440 TGCATTACATTACATCATA
1 TGCATTA-ATTACATCATA
51425459 TGCATTAA
1 TGCATTAA
51425467 AGTCTACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.71
20 6 0.25
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.39
Consensus pattern (18 bp):
TGCATTAATTACATCATA
Found at i:51434928 original size:21 final size:21
Alignment explanation
Indices: 51434886--51434929 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
51434876 TTACTCCAAG
*
51434886 GAAGCCGATTGATCCATCTCA
1 GAAGCCGATTCATCCATCTCA
*
51434907 GAAGCCGGATTCAT-CATTTCA
1 GAAGCC-GATTCATCCATCTCA
51434928 GA
1 GA
51434930 CAAGCTCTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (21 bp):
GAAGCCGATTCATCCATCTCA
Found at i:51439586 original size:26 final size:26
Alignment explanation
Indices: 51439555--51439658 Score: 163
Period size: 26 Copynumber: 4.0 Consensus size: 26
51439545 TGAAATGCCC
*
51439555 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
51439581 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
51439607 ATCATAGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
51439633 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
51439659 GTCAATTTGT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Done.