Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 23 of 167
Found at i:6901588 original size:10 final size:10
Alignment explanation
Indices: 6901573--6901618 Score: 67
Period size: 10 Copynumber: 4.6 Consensus size: 10
6901563 TAATTCTAGG
6901573 ATTTAT-TTT
1 ATTTATCTTT
6901582 CATTTATCTTT
1 -ATTTATCTTT
6901593 ATTTATCTTT
1 ATTTATCTTT
*
6901603 AATTATCTTT
1 ATTTATCTTT
6901613 ATTTAT
1 ATTTAT
6901619 GTGTATTGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
10 30 0.91
11 3 0.09
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:6901630 original size:20 final size:20
Alignment explanation
Indices: 6901585--6901623 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6901575 TTATTTTCAT
*
6901585 TTATCTTTATTTATCTTTAA
1 TTATCTTTATTTATCTGTAA
*
6901605 TTATCTTTATTTATGTGTA
1 TTATCTTTATTTATCTGTA
6901624 TTGATCTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.08, G:0.05, T:0.64
Consensus pattern (20 bp):
TTATCTTTATTTATCTGTAA
Found at i:6907376 original size:23 final size:23
Alignment explanation
Indices: 6907350--6907403 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
6907340 CTAGATTTTT
*
6907350 TTCTAAATATTATTATTAAAAAA
1 TTCTAAATATTATTACTAAAAAA
*
6907373 TTCTAAATATTATTACTAAATAA
1 TTCTAAATATTATTACTAAAAAA
6907396 TTCTAAAT
1 TTCTAAAT
6907404 TTAAAAATCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (23 bp):
TTCTAAATATTATTACTAAAAAA
Found at i:6912785 original size:14 final size:14
Alignment explanation
Indices: 6912768--6912795 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6912758 CAATTTATGC
6912768 TTTTTTTATTTTTA
1 TTTTTTTATTTTTA
6912782 TTTTTTTATTTTTA
1 TTTTTTTATTTTTA
6912796 CTTTAAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTTTTTATTTTTA
Found at i:6914734 original size:2 final size:2
Alignment explanation
Indices: 6914727--6914751 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6914717 TTGGTGATCC
6914727 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
6914752 AGATGAATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6919892 original size:17 final size:18
Alignment explanation
Indices: 6919859--6919893 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
6919849 AAATTAGAGG
*
6919859 AGAATTTATGAGAGAAAA
1 AGAATTGATGAGAGAAAA
6919877 AGAATTGATG-GAGAAAA
1 AGAATTGATGAGAGAAAA
6919894 TTTGATGCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.54, C:0.00, G:0.26, T:0.20
Consensus pattern (18 bp):
AGAATTGATGAGAGAAAA
Found at i:6920493 original size:11 final size:11
Alignment explanation
Indices: 6920477--6920501 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
6920467 TTTTTTTAAG
6920477 ACTAATATACT
1 ACTAATATACT
6920488 ACTAATATACT
1 ACTAATATACT
6920499 ACT
1 ACT
6920502 TTCGAGCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.20, G:0.00, T:0.36
Consensus pattern (11 bp):
ACTAATATACT
Found at i:6920673 original size:12 final size:12
Alignment explanation
Indices: 6920656--6920680 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6920646 ATAACACCCT
6920656 TTTTGTCGCTTG
1 TTTTGTCGCTTG
6920668 TTTTGTCGCTTG
1 TTTTGTCGCTTG
6920680 T
1 T
6920681 AAATGAAGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.16, G:0.24, T:0.60
Consensus pattern (12 bp):
TTTTGTCGCTTG
Found at i:6926140 original size:40 final size:40
Alignment explanation
Indices: 6926092--6926239 Score: 251
Period size: 40 Copynumber: 3.7 Consensus size: 40
6926082 GCAAACACAT
* * *
6926092 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
6926132 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
6926172 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
6926212 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
6926240 TCCAATGCTC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 101 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:6941372 original size:10 final size:10
Alignment explanation
Indices: 6941359--6941406 Score: 62
Period size: 10 Copynumber: 4.8 Consensus size: 10
6941349 TTATTTTCAT
6941359 TTATCTTTAA
1 TTATCTTTAA
6941369 TTATCTTTAA
1 TTATCTTTAA
*
6941379 TTATCTTTAT
1 TTATCTTTAA
*
6941389 TTAT-TTGTAT
1 TTATCTT-TAA
6941399 TTATCTTT
1 TTATCTTT
6941407 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.67
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:6947833 original size:15 final size:16
Alignment explanation
Indices: 6947795--6947826 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
6947785 CAACCCAACC
6947795 TTTAT-TTTTACTTAT
1 TTTATATTTTACTTAT
6947810 TTTATATTTT-CTTAT
1 TTTATATTTTACTTAT
6947825 TT
1 TT
6947827 CTTATTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTATATTTTACTTAT
Found at i:6947838 original size:19 final size:20
Alignment explanation
Indices: 6947814--6947858 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
6947804 ACTTATTTTA
* *
6947814 TATTTTCTTATTTCTTA-TT
1 TATTTTATTATTTATTACTT
6947833 TATTTTATTATTTATTACTT
1 TATTTTATTATTTATTACTT
6947853 TATTTT
1 TATTTT
6947859 TGGATATTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (20 bp):
TATTTTATTATTTATTACTT
Found at i:6950541 original size:96 final size:97
Alignment explanation
Indices: 6950377--6950560 Score: 271
Period size: 96 Copynumber: 1.9 Consensus size: 97
6950367 TTTTTAAGAA
* * * * *
6950377 TGTGTTGGGCTGAGTAACCGGGGTGAGGTGCTTGGCTGTCATATCTCTTTGCGTTAAAAGGTTCG
1 TGTGTTGGGCTGAGTAACCGAGATGAGGTGCTTGACTGTCATATCTCTTCGCGTCAAAAGGTTCG
*
6950442 ATATGTTATTAAG-AAAAATAAAAGTTAGGAG
66 ATATATTATTAAGCAAAAATAAAAGTTAGGAG
* * *
6950473 TGTGTTGGGTTGAGTAACCGAGATGGGGTGCTTGACTGTCATCTCTCTTCGCGTCAAAAGGTTCG
1 TGTGTTGGGCTGAGTAACCGAGATGAGGTGCTTGACTGTCATATCTCTTCGCGTCAAAAGGTTCG
*
6950538 ATATATTCTTAAGCAAAAATAAA
66 ATATATTATTAAGCAAAAATAAA
6950561 TAAATATTTT
Statistics
Matches: 77, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
96 68 0.88
97 9 0.12
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (97 bp):
TGTGTTGGGCTGAGTAACCGAGATGAGGTGCTTGACTGTCATATCTCTTCGCGTCAAAAGGTTCG
ATATATTATTAAGCAAAAATAAAAGTTAGGAG
Found at i:6951212 original size:10 final size:10
Alignment explanation
Indices: 6951197--6951246 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
6951187 TAATTTTAGA
6951197 ATTTAT-TTT
1 ATTTATCTTT
6951206 CATTTATCTTT
1 -ATTTATCTTT
*
6951217 AATTATCTTT
1 ATTTATCTTT
6951227 ATTTAT-TTGT
1 ATTTATCTT-T
6951237 ATTTATCTTT
1 ATTTATCTTT
6951247 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:6958240 original size:7 final size:7
Alignment explanation
Indices: 6958228--6958252 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
6958218 TTTGACCCAT
6958228 TTTCTTG
1 TTTCTTG
6958235 TTTCTTG
1 TTTCTTG
6958242 TTTCTTG
1 TTTCTTG
6958249 TTTC
1 TTTC
6958253 AATTTAGCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.16, G:0.12, T:0.72
Consensus pattern (7 bp):
TTTCTTG
Found at i:6959315 original size:62 final size:62
Alignment explanation
Indices: 6959218--6959433 Score: 432
Period size: 62 Copynumber: 3.5 Consensus size: 62
6959208 TTTCCCTATT
6959218 TTACAAAATCTTTGTAACATCCATCAAAATTAAATAATTGTTCCTTCTTTCCACATATATAA
1 TTACAAAATCTTTGTAACATCCATCAAAATTAAATAATTGTTCCTTCTTTCCACATATATAA
6959280 TTACAAAATCTTTGTAACATCCATCAAAATTAAATAATTGTTCCTTCTTTCCACATATATAA
1 TTACAAAATCTTTGTAACATCCATCAAAATTAAATAATTGTTCCTTCTTTCCACATATATAA
6959342 TTACAAAATCTTTGTAACATCCATCAAAATTAAATAATTGTTCCTTCTTTCCACATATATAA
1 TTACAAAATCTTTGTAACATCCATCAAAATTAAATAATTGTTCCTTCTTTCCACATATATAA
6959404 TTACAAAATCTTTGTAACATCCATCAAAAT
1 TTACAAAATCTTTGTAACATCCATCAAAAT
6959434 CAAGAAACCA
Statistics
Matches: 154, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 154 1.00
ACGTcount: A:0.39, C:0.19, G:0.03, T:0.38
Consensus pattern (62 bp):
TTACAAAATCTTTGTAACATCCATCAAAATTAAATAATTGTTCCTTCTTTCCACATATATAA
Found at i:6962084 original size:29 final size:30
Alignment explanation
Indices: 6962021--6962099 Score: 81
Period size: 29 Copynumber: 2.6 Consensus size: 30
6962011 TTTTAGATTT
* *
6962021 TTTTACATATATATTTTGAATTTTTAGAAATTA
1 TTTTA-ATATA-ATTTT-TATTTTTAGAAAATA
*
6962054 -TTTATTTATAATTTTTATTTTTA-AAAATA
1 TTTTA-ATATAATTTTTATTTTTAGAAAATA
6962083 TTTTAATATAATTTTTA
1 TTTTAATATAATTTTTA
6962100 ATATTTTTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
29 16 0.40
30 11 0.28
31 5 0.12
32 8 0.20
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (30 bp):
TTTTAATATAATTTTTATTTTTAGAAAATA
Found at i:6962124 original size:20 final size:19
Alignment explanation
Indices: 6962101--6962139 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
6962091 TAATTTTTAA
* *
6962101 TATTTTTAATATTTTATTTT
1 TATTTTAAAGATTTT-TTTT
6962121 TATTTTAAAGATTTTTTTT
1 TATTTTAAAGATTTTTTTT
6962140 AAAAAAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (19 bp):
TATTTTAAAGATTTTTTTT
Found at i:6962125 original size:29 final size:29
Alignment explanation
Indices: 6962079--6962136 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
6962069 TATTTTTAAA
* *
6962079 AATATTTTAATATAATTTTTAATATTTTT
1 AATATTTTAATATAATTTTAAAGATTTTT
* * *
6962108 AATATTTTATTTTTATTTTAAAGATTTTT
1 AATATTTTAATATAATTTTAAAGATTTTT
6962137 TTTAAAAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (29 bp):
AATATTTTAATATAATTTTAAAGATTTTT
Found at i:6963362 original size:11 final size:11
Alignment explanation
Indices: 6963346--6963372 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
6963336 ATTTTTGTTA
6963346 GACACTCGTTC
1 GACACTCGTTC
6963357 GACACTCGTTC
1 GACACTCGTTC
6963368 GACAC
1 GACAC
6963373 GAGTTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.37, G:0.19, T:0.22
Consensus pattern (11 bp):
GACACTCGTTC
Found at i:6963761 original size:14 final size:14
Alignment explanation
Indices: 6963742--6963808 Score: 107
Period size: 14 Copynumber: 4.7 Consensus size: 14
6963732 GTTTGCAGGT
* *
6963742 AAAATGTTTTCAGG
1 AAAATGATTTCTGG
6963756 AAAATGATTTCTGG
1 AAAATGATTTCTGG
6963770 AAAATGATTTCTTGG
1 AAAATGATTTC-TGG
6963785 AAAATGATTTCTGG
1 AAAATGATTTCTGG
6963799 AAAATGATTT
1 AAAATGATTT
6963809 ACTTTTCTGT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
14 36 0.72
15 14 0.28
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.37
Consensus pattern (14 bp):
AAAATGATTTCTGG
Found at i:6964289 original size:22 final size:22
Alignment explanation
Indices: 6964264--6964352 Score: 83
Period size: 22 Copynumber: 4.0 Consensus size: 22
6964254 ATCCAATTGC
*
6964264 ATAACTAATATTACACCATATG
1 ATAACTAATATTACACCACATG
*
6964286 ATAACTAATATTACGCCACATG
1 ATAACTAATATTACACCACATG
* **
6964308 ATAACAACAATATT-GTCCA-AGTG
1 ATAAC--TAATATTACACCACA-TG
6964331 CATAACTAATATTACACCACAT
1 -ATAACTAATATTACACCACAT
6964353 TAAAAGTATC
Statistics
Matches: 53, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
22 32 0.60
23 9 0.17
24 12 0.23
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.28
Consensus pattern (22 bp):
ATAACTAATATTACACCACATG
Found at i:6965370 original size:27 final size:30
Alignment explanation
Indices: 6965304--6965376 Score: 89
Period size: 32 Copynumber: 2.5 Consensus size: 30
6965294 GTCAATCATT
*
6965304 TCAATATCCAACAAGCTTAAAACATAATAAAC
1 TCAATATCTAACAAGCTTAAAAC--AATAAAC
*
6965336 TCAATATCTAACAAGCTTGAAAC-AT-AA-
1 TCAATATCTAACAAGCTTAAAACAATAAAC
6965363 TCAATATCTAACAA
1 TCAATATCTAACAA
6965377 AATCAAGACA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 14 0.36
28 2 0.05
29 2 0.05
32 21 0.54
ACGTcount: A:0.51, C:0.21, G:0.04, T:0.25
Consensus pattern (30 bp):
TCAATATCTAACAAGCTTAAAACAATAAAC
Found at i:6967532 original size:3 final size:3
Alignment explanation
Indices: 6967524--6967548 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
6967514 TAAGGTTGAG
6967524 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
6967549 TTTTTTATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:6969786 original size:17 final size:17
Alignment explanation
Indices: 6969730--6969789 Score: 57
Period size: 18 Copynumber: 3.4 Consensus size: 17
6969720 AAGGAAAAAG
*
6969730 GGAAGAGATTTGAAGAAC
1 GGAAGA-ATTTGAAGAAT
* ***
6969748 GAAAGAAGAAGAAGACAT
1 GGAAGAATTTGAAGA-AT
6969766 GGAAGAATTTGAAGAAT
1 GGAAGAATTTGAAGAAT
6969783 GGAAGAA
1 GGAAGAA
6969790 AAAGAAGGCA
Statistics
Matches: 32, Mismatches: 9, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
17 15 0.47
18 17 0.53
ACGTcount: A:0.52, C:0.03, G:0.32, T:0.13
Consensus pattern (17 bp):
GGAAGAATTTGAAGAAT
Found at i:6970443 original size:20 final size:20
Alignment explanation
Indices: 6970406--6970445 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
6970396 CTTGGATTAG
*
6970406 ATTAAATTAATCTCTTTATT
1 ATTAAATTAATCTATTTATT
* *
6970426 ATTAAGTTAATTTATTTATT
1 ATTAAATTAATCTATTTATT
6970446 TTTATATTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (20 bp):
ATTAAATTAATCTATTTATT
Found at i:6971552 original size:16 final size:16
Alignment explanation
Indices: 6971531--6971564 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
6971521 CCCTCTTATT
6971531 TATAATTATTGTTTAA
1 TATAATTATTGTTTAA
6971547 TATAATTATTGTTTAA
1 TATAATTATTGTTTAA
6971563 TA
1 TA
6971565 CGAGCAAGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TATAATTATTGTTTAA
Found at i:6973477 original size:131 final size:130
Alignment explanation
Indices: 6973309--6973543 Score: 337
Period size: 131 Copynumber: 1.8 Consensus size: 130
6973299 CTTTAAATCA
** * *
6973309 TTTTATTTTAAAATTTGTACTTTGATTTTTAAAAGGATATTCGGTTGTTTAGATCCAACGAGAAA
1 TTTTATTTTAAAATTTGTACTTTGAAATTTAAAAGGATATTCGGCTATTTAGATCCAACGAGAAA
*
6973374 AATCGAAACCCCGTAAGTTAGGGCACGACCTTCTTGAATTTCTAAACACGGAATATTGCTTTTAC
66 AATCGAAACCCCGTAAGTTAGGGCACGACCTTCTCGAATTTCTAAACACGGAATATTGCTTTTAC
* * * *
6973439 TTTTA-TTTAAAATTCATGTATTTTGAAATTTAAAAGGATGTTCGGCTATTTAGGTTCAACGAGA
1 TTTTATTTTAAAATT--TGTACTTTGAAATTTAAAAGGATATTCGGCTATTTAGATCCAACGAGA
* * *
6973503 AAATTCGAAACCCCGTAAGTTAGGGTACGATCTTCTCGAAT
64 AAAATCGAAACCCCGTAAGTTAGGGCACGACCTTCTCGAAT
6973544 CTCCAAAATT
Statistics
Matches: 91, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
129 9 0.10
130 5 0.05
131 77 0.85
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (130 bp):
TTTTATTTTAAAATTTGTACTTTGAAATTTAAAAGGATATTCGGCTATTTAGATCCAACGAGAAA
AATCGAAACCCCGTAAGTTAGGGCACGACCTTCTCGAATTTCTAAACACGGAATATTGCTTTTAC
Found at i:6974115 original size:21 final size:21
Alignment explanation
Indices: 6974090--6974131 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
6974080 AGTAAATGAA
6974090 GACCAAATTGGAATTAAAATG
1 GACCAAATTGGAATTAAAATG
6974111 GACCAAATTGGAATTAAAATG
1 GACCAAATTGGAATTAAAATG
6974132 AACTTAAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.10, G:0.19, T:0.24
Consensus pattern (21 bp):
GACCAAATTGGAATTAAAATG
Found at i:6975927 original size:143 final size:143
Alignment explanation
Indices: 6975736--6976283 Score: 744
Period size: 143 Copynumber: 3.8 Consensus size: 143
6975726 GATTCGTAAC
* * * * * *
6975736 TTGTAGCTTTAATCTGCTCCACCGCAACTTCAGGGAAATGAGATTCGCTATCTTCAGTCTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACGTCAAGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
* *
6975801 GCTGCAACTCCAGAGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTTAGAAAGATAA
66 GCTGCAACTTCAGAGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAGAAAGATAA
*
6975866 GATTCACCATAAT
131 GATCCACCATAAT
* * * * * *
6975879 TTGTAGCTTTAATATATTCCACTGCAATGTCATGGAAATAAGATTCGCTGTCTTTAGTTTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACGTCAAGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
* * * *
6975944 ACTACAACTTCA-AGGAGATAAAGCTGGTGGCTTTAATCTACTCCACTGCAACTTCA-AGAAGAT
66 GCTGCAACTTCAGA-GAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAGA-AAGAT
* *
6976007 AAGATCCGCCACAAT
129 AAGATCCACCATAAT
6976022 TTGTAGCTTTAATCTGTTCCACTGCAACGTCAAGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACGTCAAGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
* * * * * *
6976087 GCTGCAACATT-AGGGAAATAAGGTTGGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATA
66 GCTGCAAC-TTCAGAGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAGAAAGATA
6976151 AGATCCACCATAAT
130 AGATCCACCATAAT
*
6976165 TTGTAGCTTTAATCTGTTCCACTGCAACGTCAAGGAAATAAGATTCACTGTCTTCAGTCTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACGTCAAGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
* * * *
6976230 GCTGCAACTTCAG-GAAGATAAGGCTAGTGGCTTCAATTTGCTCCACTGCTACTT
66 GCTGCAACTTCAGAG-AGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTT
6976284 TAAGTAGATG
Statistics
Matches: 353, Mismatches: 45, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
142 5 0.01
143 346 0.98
144 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (143 bp):
TTGTAGCTTTAATCTGTTCCACTGCAACGTCAAGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
GCTGCAACTTCAGAGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTCAGAAAGATAA
GATCCACCATAAT
Found at i:6976152 original size:44 final size:44
Alignment explanation
Indices: 6976027--6976283 Score: 151
Period size: 44 Copynumber: 5.6 Consensus size: 44
6976017 ACAATTTGTA
* * *
6976027 GCTTTAATCTGTTCCACTGCAACGTCAAGGAAATAAGATTCGCTG
1 GCTTCAATCTGCTCCACTGCAACTTC-AGGAAATAAGATTCGCTG
* * * * *
6976072 TCTTCAGTCTGCTCCGCTGCAACATT-AGGGAAATAAGGTT-GGTG
1 GCTTCAATCTGCTCCACTGCAAC-TTCA-GGAAATAAGATTCGCTG
* * *
6976116 GCTTCAATCTGCTCCACTACAACTTCAGGAAGATAAGATCCACCATAATTTG
1 GCTTCAATCTGCTCCACTGCAACTTCAGGAA-ATAAGATTC-GC------TG
* * * *
6976168 TAGCTTTAATCTGTTCCACTGCAACGTCAAGGAAATAAGATTCACTG
1 --GCTTCAATCTGCTCCACTGCAACTTC-AGGAAATAAGATTCGCTG
* * * ** *
6976215 TCTTCAGTCTGCTCCGCTGCAACTTCAGGAAGATAAGGCTAG-TG
1 GCTTCAATCTGCTCCACTGCAACTTCAGGAA-ATAAGATTCGCTG
* *
6976259 GCTTCAATTTGCTCCACTGCTACTT
1 GCTTCAATCTGCTCCACTGCAACTT
6976284 TAAGTAGATG
Statistics
Matches: 159, Mismatches: 37, Indels: 33
0.69 0.16 0.14
Matches are distributed among these distances:
43 6 0.04
44 57 0.36
45 55 0.35
46 1 0.01
47 2 0.01
52 2 0.01
53 1 0.01
54 30 0.19
55 5 0.03
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (44 bp):
GCTTCAATCTGCTCCACTGCAACTTCAGGAAATAAGATTCGCTG
Found at i:6977686 original size:26 final size:26
Alignment explanation
Indices: 6977657--6977738 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
6977647 TGGTACAAAT
6977657 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
6977683 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
6977709 TGATAATGGGTTAGGTATATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
6977735 TGAT
1 TGAT
6977739 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:6980419 original size:6 final size:6
Alignment explanation
Indices: 6980410--6980521 Score: 95
Period size: 6 Copynumber: 18.0 Consensus size: 6
6980400 TTAGCCTCTC
* *
6980410 CTTTTT C-TTTT CTTTTT CTTTTT -TCTTTT CTTTTT TTGTTTT TTCTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CT-TTTT CTTTTT CT-TTTT CT-TTTT
*
6980459 C-TTTT CTTTTTT CTTTTT CTTTTTAT TTTTTT CTTTTT CTTTTTT CTTTTT
1 CTTTTT C-TTTTT CTTTTT C-TTTT-T CTTTTT CTTTTT C-TTTTT CTTTTT
* *
6980510 ATTTTT ATTTTT
1 CTTTTT CTTTTT
6980522 TTAAGGTGAA
Statistics
Matches: 91, Mismatches: 6, Indels: 18
0.79 0.05 0.16
Matches are distributed among these distances:
5 11 0.12
6 49 0.54
7 30 0.33
8 1 0.01
ACGTcount: A:0.03, C:0.12, G:0.01, T:0.84
Consensus pattern (6 bp):
CTTTTT
Found at i:6980426 original size:1 final size:1
Alignment explanation
Indices: 6980411--6980523 Score: 73
Period size: 1 Copynumber: 113.0 Consensus size: 1
6980401 TAGCCTCTCC
* * * * * * * * * *
6980411 TTTTTCTTTTCTTTTTCTTTTTTCTTTTCTTTTTTTGTTTTTTCTTTTCTTTTCTTTTTTCTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * *
6980476 TCTTTTTATTTTTTTCTTTTTCTTTTTTCTTTTTATTTTTATTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
6980524 AAGGTGAAGT
Statistics
Matches: 78, Mismatches: 34, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 78 1.00
ACGTcount: A:0.03, C:0.12, G:0.01, T:0.85
Consensus pattern (1 bp):
T
Found at i:6980435 original size:13 final size:13
Alignment explanation
Indices: 6980417--6980522 Score: 107
Period size: 13 Copynumber: 8.3 Consensus size: 13
6980407 CTCCTTTTTC
6980417 TTTTCTTTTTCTT
1 TTTTCTTTTTCTT
6980430 TTTTC-TTTTCTT
1 TTTTCTTTTTCTT
6980442 TTTT-TGTTTT-TT
1 TTTTCT-TTTTCTT
6980454 CTTTTC-TTTTCTT
1 -TTTTCTTTTTCTT
6980467 TTTTCTTTTTCTT
1 TTTTCTTTTTCTT
*
6980480 TTTATTTTTTTC-T
1 TTT-TCTTTTTCTT
6980493 TTTTCTTTTT-TCT
1 TTTTCTTTTTCT-T
* *
6980506 TTTTATTTTTATT
1 TTTTCTTTTTCTT
6980519 TTTT
1 TTTT
6980523 TAAGGTGAAG
Statistics
Matches: 80, Mismatches: 3, Indels: 20
0.78 0.03 0.19
Matches are distributed among these distances:
12 28 0.35
13 44 0.55
14 8 0.10
ACGTcount: A:0.03, C:0.11, G:0.01, T:0.85
Consensus pattern (13 bp):
TTTTCTTTTTCTT
Found at i:6980458 original size:33 final size:32
Alignment explanation
Indices: 6980411--6980523 Score: 129
Period size: 33 Copynumber: 3.3 Consensus size: 32
6980401 TAGCCTCTCC
*
6980411 TTTTTCTTTTCTTTTTCTTTTTTCTTTTCTTT
1 TTTTTTTTTTCTTTTTCTTTTTTCTTTTCTTT
6980443 TTTTGTTTTTTCTTTTCTTTTCTTTTTTCTTTTTCTTT
1 TTTT-TTTTTTC---T-TTTTCTTTTTTC-TTTTCTTT
*
6980481 TTATTTTTTTCTTTTTCTTTTTTCTTTT-TATT
1 TTTTTTTTTTCTTTTTCTTTTTTCTTTTCT-TT
6980513 TTTATTTTTTT
1 TTT-TTTTTTT
6980524 AAGGTGAAGT
Statistics
Matches: 70, Mismatches: 3, Indels: 15
0.80 0.03 0.17
Matches are distributed among these distances:
31 1 0.01
32 12 0.17
33 25 0.36
34 1 0.01
36 1 0.01
37 19 0.27
38 11 0.16
ACGTcount: A:0.03, C:0.12, G:0.01, T:0.85
Consensus pattern (32 bp):
TTTTTTTTTTCTTTTTCTTTTTTCTTTTCTTT
Found at i:6982107 original size:88 final size:81
Alignment explanation
Indices: 6981956--6982113 Score: 210
Period size: 81 Copynumber: 1.9 Consensus size: 81
6981946 AGGAATATCC
* *
6981956 AAAGAATAAAAGAATTTAAGAATAATTATTTATATGGTATGATCATGAATGAAGAATAAAAGAAT
1 AAAGAACAAAAGAATTTAAGAATAATTATTTATATGGTATGATAATGAATGAAGAATAAAAGAAT
6982021 ATTTGAAAGGAAGTCT
66 ATTTGAAAGGAAGTCT
*
6982037 AAAGAACAAAAGAATTTAAGAATAATTATCTGTATA-GGATGATTATGAATGAAATGGAAAGAAT
1 AAAGAACAAAAGAATTTAAGAATAATTAT-T-TATATGG-T-ATGAT-AATG-AAT-G-AAGAAT
6982101 AAAAGAATATTTG
58 AAAAGAATATTTG
6982114 CTCAAAGTGA
Statistics
Matches: 66, Mismatches: 3, Indels: 9
0.85 0.04 0.12
Matches are distributed among these distances:
81 28 0.42
82 3 0.05
83 5 0.08
84 4 0.06
85 3 0.05
86 3 0.05
87 1 0.02
88 19 0.29
ACGTcount: A:0.51, C:0.03, G:0.18, T:0.28
Consensus pattern (81 bp):
AAAGAACAAAAGAATTTAAGAATAATTATTTATATGGTATGATAATGAATGAAGAATAAAAGAAT
ATTTGAAAGGAAGTCT
Found at i:6984749 original size:131 final size:130
Alignment explanation
Indices: 6984581--6984815 Score: 357
Period size: 131 Copynumber: 1.8 Consensus size: 130
6984571 CTTTAAATTA
** * *
6984581 TTTTATTTTAAAATTTGTACTTTGATTTTTAAAAGGATATTCGGTTGTTTAGATCCAACGAGAAA
1 TTTTATTTTAAAATTTGTACTTTGAAATTTAAAAGGATATTCGGCTATTTAGATCCAACGAGAAA
6984646 AATTGAAACCCCGTAAGTTAGGGTACGA-CTTTCTCGAATTTCTAAACACGGAATATTGCTTTTA
66 AATTGAAACCCCGTAAGTTAGGGTACGATC-TTCTCGAATTTCTAAACACGGAATATTGCTTTTA
6984710 C
130 C
* * * *
6984711 TTTTA-TTTAAAATTCATGTATTTTGAAATTTAAAAGGATGTTCGGCTATTTAGGTTCAACGAGA
1 TTTTATTTTAAAATT--TGTACTTTGAAATTTAAAAGGATATTCGGCTATTTAGATCCAACGAGA
6984775 AAAATTGAAACCCCGTAAGTTAGGGTACGATCTTCTCGAAT
64 AAAATTGAAACCCCGTAAGTTAGGGTACGATCTTCTCGAAT
6984816 CTCCAAAATT
Statistics
Matches: 94, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
129 9 0.10
130 5 0.05
131 79 0.84
132 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.37
Consensus pattern (130 bp):
TTTTATTTTAAAATTTGTACTTTGAAATTTAAAAGGATATTCGGCTATTTAGATCCAACGAGAAA
AATTGAAACCCCGTAAGTTAGGGTACGATCTTCTCGAATTTCTAAACACGGAATATTGCTTTTAC
Found at i:6987594 original size:173 final size:173
Alignment explanation
Indices: 6987305--6988341 Score: 2074
Period size: 173 Copynumber: 6.0 Consensus size: 173
6987295 CTCCTCAAAA
6987305 TGGTTCCAACTCATAAACCACTTCACTATTTTCAACCATGTTTCCTCGAAAGAAAAAAAATGCTA
1 TGGTTCCAACTCATAAACCACTTCACTATTTTCAACCATGTTTCCTCGAAAGAAAAAAAATGCTA
6987370 TAAACAGCAACTCAGAGACGTTAAACTCAACGCTTGTTACAATATCGTTTCAAAGAGTTGGTTAT
66 TAAACAGCAACTCAGAGACGTTAAACTCAACGCTTGTTACAATATCGTTTCAAAGAGTTGGTTAT
6987435 TCTTTCTTTATTTCTTTCTGTAGGTATTAGGATGTTTGGTAGT
131 TCTTTCTTTATTTCTTTCTGTAGGTATTAGGATGTTTGGTAGT
6987478 TGGTTCCAACTCATAAACCACTTCACTATTTTCAACCATGTTTCCTCGAAAGAAAAAAAATGCTA
1 TGGTTCCAACTCATAAACCACTTCACTATTTTCAACCATGTTTCCTCGAAAGAAAAAAAATGCTA
6987543 TAAACAGCAACTCAGAGACGTTAAACTCAACGCTTGTTACAATATCGTTTCAAAGAGTTGGTTAT
66 TAAACAGCAACTCAGAGACGTTAAACTCAACGCTTGTTACAATATCGTTTCAAAGAGTTGGTTAT
6987608 TCTTTCTTTATTTCTTTCTGTAGGTATTAGGATGTTTGGTAGT
131 TCTTTCTTTATTTCTTTCTGTAGGTATTAGGATGTTTGGTAGT
6987651 TGGTTCCAACTCATAAACCACTTCACTATTTTCAACCATGTTTCCTCGAAAGAAAAAAAATGCTA
1 TGGTTCCAACTCATAAACCACTTCACTATTTTCAACCATGTTTCCTCGAAAGAAAAAAAATGCTA
6987716 TAAACAGCAACTCAGAGACGTTAAACTCAACGCTTGTTACAATATCGTTTCAAAGAGTTGGTTAT
66 TAAACAGCAACTCAGAGACGTTAAACTCAACGCTTGTTACAATATCGTTTCAAAGAGTTGGTTAT
6987781 TCTTTCTTTATTTCTTTCTGTAGGTATTAGGATGTTTGGTAGT
131 TCTTTCTTTATTTCTTTCTGTAGGTATTAGGATGTTTGGTAGT
6987824 TGGTTCCAACTCATAAACCACTTCACTATTTTCAACCATGTTTCCTCGAAAGAAAAAAAATGCTA
1 TGGTTCCAACTCATAAACCACTTCACTATTTTCAACCATGTTTCCTCGAAAGAAAAAAAATGCTA
6987889 TAAACAGCAACTCAGAGACGTTAAACTCAACGCTTGTTACAATATCGTTTCAAAGAGTTGGTTAT
66 TAAACAGCAACTCAGAGACGTTAAACTCAACGCTTGTTACAATATCGTTTCAAAGAGTTGGTTAT
6987954 TCTTTCTTTATTTCTTTCTGTAGGTATTAGGATGTTTGGTAGT
131 TCTTTCTTTATTTCTTTCTGTAGGTATTAGGATGTTTGGTAGT
6987997 TGGTTCCAACTCATAAACCACTTCACTATTTTCAACCATGTTTCCTCGAAAGAAAAAAAATGCTA
1 TGGTTCCAACTCATAAACCACTTCACTATTTTCAACCATGTTTCCTCGAAAGAAAAAAAATGCTA
6988062 TAAACAGCAACTCAGAGACGTTAAACTCAACGCTTGTTACAATATCGTTTCAAAGAGTTGGTTAT
66 TAAACAGCAACTCAGAGACGTTAAACTCAACGCTTGTTACAATATCGTTTCAAAGAGTTGGTTAT
6988127 TCTTTCTTTATTTCTTTCTGTAGGTATTAGGATGTTTGGTAGT
131 TCTTTCTTTATTTCTTTCTGTAGGTATTAGGATGTTTGGTAGT
6988170 TGGTTCCAACTCATAAACCACTTCACTATTTTCAACCATGTTTCCTCGAAAGAAAAAAAATGCTA
1 TGGTTCCAACTCATAAACCACTTCACTATTTTCAACCATGTTTCCTCGAAAGAAAAAAAATGCTA
6988235 TAAACAGCAACTCAGAGACGTTAAACTCAACGCTTGTTACAATATCGTTTCAAAGAGTTGGTTAT
66 TAAACAGCAACTCAGAGACGTTAAACTCAACGCTTGTTACAATATCGTTTCAAAGAGTTGGTTAT
6988300 TCTTTCTTTATTTCTTTCTGTAGGTATTAGGATGTTTGGTAG
131 TCTTTCTTTATTTCTTTCTGTAGGTATTAGGATGTTTGGTAG
6988342 CTATGTAAAG
Statistics
Matches: 864, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
173 864 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (173 bp):
TGGTTCCAACTCATAAACCACTTCACTATTTTCAACCATGTTTCCTCGAAAGAAAAAAAATGCTA
TAAACAGCAACTCAGAGACGTTAAACTCAACGCTTGTTACAATATCGTTTCAAAGAGTTGGTTAT
TCTTTCTTTATTTCTTTCTGTAGGTATTAGGATGTTTGGTAGT
Found at i:6992229 original size:30 final size:31
Alignment explanation
Indices: 6992195--6992259 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
6992185 CGTAACTAAA
*
6992195 AAAAGTTATAAATTAA-TTACTAAACTATTC
1 AAAAGTTATAAATTAAGTCACTAAACTATTC
* * * *
6992225 AAAAGTTTTCATTTAAGTCAGTAAACTATTC
1 AAAAGTTATAAATTAAGTCACTAAACTATTC
6992256 AAAA
1 AAAA
6992260 ATATTCATTA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 13 0.45
31 16 0.55
ACGTcount: A:0.48, C:0.11, G:0.06, T:0.35
Consensus pattern (31 bp):
AAAAGTTATAAATTAAGTCACTAAACTATTC
Found at i:6992252 original size:31 final size:31
Alignment explanation
Indices: 6992215--6992275 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
6992205 AATTAATTAC
* * *
6992215 TAAACTATTCAAAAGTTTTCATTTAAGTCAG
1 TAAACTATTCAAAAATATTCATTAAAGTCAG
6992246 TAAACTATTCAAAAATATTCATTAAAGTCA
1 TAAACTATTCAAAAATATTCATTAAAGTCA
6992276 CTGAGTTGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.44, C:0.13, G:0.07, T:0.36
Consensus pattern (31 bp):
TAAACTATTCAAAAATATTCATTAAAGTCAG
Found at i:7000082 original size:57 final size:57
Alignment explanation
Indices: 7000016--7000125 Score: 220
Period size: 57 Copynumber: 1.9 Consensus size: 57
7000006 AAGAGTAGTT
7000016 ATTAAATGTAAAGAGTAACCATTAAATTTGACATCAACGAACATGAGTATAAGAGTC
1 ATTAAATGTAAAGAGTAACCATTAAATTTGACATCAACGAACATGAGTATAAGAGTC
7000073 ATTAAATGTAAAGAGTAACCATTAAATTTGACATCAACGAACATGAGTATAAG
1 ATTAAATGTAAAGAGTAACCATTAAATTTGACATCAACGAACATGAGTATAAG
7000126 GGTATATACA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.26
Consensus pattern (57 bp):
ATTAAATGTAAAGAGTAACCATTAAATTTGACATCAACGAACATGAGTATAAGAGTC
Found at i:7002003 original size:93 final size:91
Alignment explanation
Indices: 7001854--7002064 Score: 296
Period size: 93 Copynumber: 2.3 Consensus size: 91
7001844 TGCCATAGCG
* * *
7001854 TCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCATTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACACA-TTTCTGTCACGTTGCCATGGTATCATTCAACCATGGTCTTA
** * *
7001919 TTCATTTCCCCGTCACGTTGCCATGGTA
65 CACATTT-CACATCACGTTGCCATGGTA
* *
7001947 TCTTTCAACCATGGTCTTAAACATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACACATTTC-TGTCACGTTGCCATGGTATCATTCAACCATGGTCTTA
* *
7002012 CACATTTCATATCAGGTTGCCATGGTA
65 CACATTTCACATCACGTTGCCATGGTA
7002039 TCTTTCAACCATGGTCTTACACATTT
1 TCTTTCAACCATGGTCTTACACATTT
7002065 TCTATCAGAG
Statistics
Matches: 105, Mismatches: 12, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
92 45 0.43
93 60 0.57
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.39
Consensus pattern (91 bp):
TCTTTCAACCATGGTCTTACACATTTCTGTCACGTTGCCATGGTATCATTCAACCATGGTCTTAC
ACATTTCACATCACGTTGCCATGGTA
Found at i:7002072 original size:46 final size:46
Alignment explanation
Indices: 7001854--7002067 Score: 288
Period size: 46 Copynumber: 4.6 Consensus size: 46
7001844 TGCCATAGCG
* * *
7001854 TCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTTCTGTCACGTTGCCATGGTA
* ** * *
7001900 TCATTCAACCATGGTCTTATTCATTTCCCCGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTT-TCTGTCACGTTGCCATGGTA
*
7001947 TCTTTCAACCATGGTCTTAAACA-TTTCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTTC-TGTCACGTTGCCATGGTA
* *
7001993 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTTC-TGTCACGTTGCCATGGTA
7002039 TCTTTCAACCATGGTCTTACACATTTTCT
1 TCTTTCAACCATGGTCTTACACATTTTCT
7002068 ATCAGAGAGC
Statistics
Matches: 151, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
45 1 0.01
46 109 0.72
47 41 0.27
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTTCTGTCACGTTGCCATGGTA
Found at i:7004229 original size:11 final size:11
Alignment explanation
Indices: 7004213--7004264 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
7004203 TATACTAAAT
7004213 AAATAATAATA
1 AAATAATAATA
*
7004224 AAATAAT-ATT
1 AAATAATAATA
* *
7004234 AAATATCTCATA
1 AAATA-ATAATA
*
7004246 AAATATTAATA
1 AAATAATAATA
7004257 AAATAATA
1 AAATAATA
7004265 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:7004820 original size:19 final size:18
Alignment explanation
Indices: 7004794--7004840 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
7004784 CATCAACAGT
7004794 GAAAAAAAACGCTAAAAACA
1 GAAAAAAAA-GCTAAAAA-A
* *
7004814 GAAAAAAAAGCTGAAAAT
1 GAAAAAAAAGCTAAAAAA
7004832 GAAAAAAAA
1 GAAAAAAAA
7004841 TAAAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 9 0.36
19 7 0.28
20 9 0.36
ACGTcount: A:0.72, C:0.09, G:0.13, T:0.06
Consensus pattern (18 bp):
GAAAAAAAAGCTAAAAAA
Found at i:7005030 original size:3 final size:3
Alignment explanation
Indices: 7005015--7005057 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
7005005 TTCAGGAACA
* * *
7005015 AAG AAG GAG AAG AAG AAA AAG AA- AAG AAG GAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
7005058 AGAAAAAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7005040 original size:23 final size:24
Alignment explanation
Indices: 7005014--7005063 Score: 93
Period size: 23 Copynumber: 2.1 Consensus size: 24
7005004 TTTCAGGAAC
7005014 AAAGAAGGAGAAGAAGAA-AAAGA
1 AAAGAAGGAGAAGAAGAAGAAAGA
7005037 AAAGAAGGAGAAGAAGAAGAAAGA
1 AAAGAAGGAGAAGAAGAAGAAAGA
7005061 AAA
1 AAA
7005064 AAAAGGGGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 18 0.69
24 8 0.31
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (24 bp):
AAAGAAGGAGAAGAAGAAGAAAGA
Found at i:7005048 original size:17 final size:17
Alignment explanation
Indices: 7005022--7005068 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
7005012 ACAAAGAAGG
7005022 AGAAGAAGAAAAAGAAA
1 AGAAGAAGAAAAAGAAA
* * *
7005039 AGAAGGAGAAGAAGAAG
1 AGAAGAAGAAAAAGAAA
*
7005056 A-AAGAAAAAAAAG
1 AGAAGAAGAAAAAG
7005069 GGGAGGAGGA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
16 9 0.38
17 15 0.62
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (17 bp):
AGAAGAAGAAAAAGAAA
Found at i:7005126 original size:14 final size:14
Alignment explanation
Indices: 7005101--7005164 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 14
7005091 CACTTGAGAG
7005101 AAGAAAAA-AGAAA
1 AAGAAAAAGAGAAA
*
7005114 AAGAAAAAGAGAAG
1 AAGAAAAAGAGAAA
* * **
7005128 GAGAAGAAGAGGGA
1 AAGAAAAAGAGAAA
*
7005142 AGGAAAAAGAAGAAA
1 AAGAAAAAG-AGAAA
7005157 AA-AAAAAG
1 AAGAAAAAG
7005165 GTAACTTTTT
Statistics
Matches: 37, Mismatches: 12, Indels: 3
0.71 0.23 0.06
Matches are distributed among these distances:
13 8 0.22
14 25 0.68
15 4 0.11
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (14 bp):
AAGAAAAAGAGAAA
Found at i:7005613 original size:18 final size:17
Alignment explanation
Indices: 7005572--7005611 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
7005562 TATATTAATG
7005572 AAAAAATAAAATACGAA
1 AAAAAATAAAATACGAA
7005589 AAAAAATAAAATACGAA
1 AAAAAATAAAATACGAA
7005606 AAAAAA
1 AAAAAA
7005612 ATTTGGGGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.80, C:0.05, G:0.05, T:0.10
Consensus pattern (17 bp):
AAAAAATAAAATACGAA
Found at i:7005808 original size:133 final size:134
Alignment explanation
Indices: 7005665--7005937 Score: 356
Period size: 133 Copynumber: 2.0 Consensus size: 134
7005655 TAAAAAATAA
* * * *
7005665 AATATGAAAATAGTATA-TTTAAAAAATAAAATCCGAAAATAAAAAAATACGAACAAGGTG-TCA
1 AATATGAAAATAATATATTTTAAAAAATAAAATACAAAAAT-AAAAAATACGAACAAAGTGCT-A
* * * * * *
7005728 AAGCCAGGGTTTTTTATTAAATTAATAT-AAAAA-ACTTAAATAATACATTTAAAACATTTTTTG
64 AAACCAGGGTTATTTATTAAA-AAATATAAAAAACACTTAAATAATACATTTAAAACATTATGTA
7005791 CTAAAAT
128 CTAAAAT
* *
7005798 AATATGAAAATAATATATTTTAAAAAATAATATACAAAAATAAAAAATACGAATAAAGTGCTAAA
1 AATATGAAAATAATATATTTTAAAAAATAAAATACAAAAATAAAAAATACGAACAAAGTGCTAAA
* *
7005863 ATCAGGGTTATTTATTAAAAAATATAAAAAAACACTTAAATAATACATTTGAAACATTATGTACT
66 ACCAGGGTTATTTATTAAAAAATAT-AAAAAACACTTAAATAATACATTTAAAACATTATGTACT
7005928 AAAAT
130 AAAAT
7005933 AATAT
1 AATAT
7005938 AAAGAAATAA
Statistics
Matches: 121, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
132 5 0.04
133 52 0.43
134 26 0.21
135 38 0.31
ACGTcount: A:0.55, C:0.07, G:0.08, T:0.30
Consensus pattern (134 bp):
AATATGAAAATAATATATTTTAAAAAATAAAATACAAAAATAAAAAATACGAACAAAGTGCTAAA
ACCAGGGTTATTTATTAAAAAATATAAAAAACACTTAAATAATACATTTAAAACATTATGTACTA
AAAT
Found at i:7008558 original size:27 final size:27
Alignment explanation
Indices: 7008528--7008589 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
7008518 AATAACTAAC
*
7008528 AATAATTAGGGTTTTTTTACTAACAAT
1 AATAATAAGGGTTTTTTTACTAACAAT
7008555 AATAATAAGGGTTTTTTTACTAACAAT
1 AATAATAAGGGTTTTTTTACTAACAAT
*
7008582 ATTAATAA
1 AATAATAA
7008590 CTAACAACAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.42, C:0.06, G:0.10, T:0.42
Consensus pattern (27 bp):
AATAATAAGGGTTTTTTTACTAACAAT
Found at i:7008894 original size:20 final size:20
Alignment explanation
Indices: 7008864--7008916 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
7008854 TTACTTATTT
*
7008864 TTTTATTTTTTCGTTTTCAGC
1 TTTT-TTTTTTCATTTTCAGC
7008885 TTTTTTTTTTCATTTTCAGC
1 TTTTTTTTTTCATTTTCAGC
*
7008905 CTTTTTTTTTCA
1 TTTTTTTTTTCA
7008917 CTGTTGAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 26 0.87
21 4 0.13
ACGTcount: A:0.09, C:0.15, G:0.06, T:0.70
Consensus pattern (20 bp):
TTTTTTTTTTCATTTTCAGC
Found at i:7010348 original size:16 final size:15
Alignment explanation
Indices: 7010327--7010406 Score: 52
Period size: 17 Copynumber: 5.0 Consensus size: 15
7010317 TTTTTTTACA
*
7010327 AAAATAGTATAAAAAT
1 AAAATACTA-AAAAAT
7010343 AAAATACTAAAAAAT
1 AAAATACTAAAAAAT
** * *
7010358 ATATCTTAATGAAAAAT
1 A-A-AATACTAAAAAAT
*
7010375 AAAATACAAAAACAAAT
1 AAAATAC-TAAA-AAAT
*
7010392 AAAATACGAAAAAAT
1 AAAATACTAAAAAAT
7010407 TAATTTTTTT
Statistics
Matches: 49, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
15 13 0.27
16 15 0.31
17 21 0.43
ACGTcount: A:0.69, C:0.06, G:0.04, T:0.21
Consensus pattern (15 bp):
AAAATACTAAAAAAT
Found at i:7010391 original size:17 final size:18
Alignment explanation
Indices: 7010371--7010404 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
7010361 TCTTAATGAA
7010371 AAATAAAATAC-AAAAAC
1 AAATAAAATACGAAAAAC
7010388 AAATAAAATACGAAAAA
1 AAATAAAATACGAAAAA
7010405 ATTAATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.76, C:0.09, G:0.03, T:0.12
Consensus pattern (18 bp):
AAATAAAATACGAAAAAC
Found at i:7010609 original size:12 final size:13
Alignment explanation
Indices: 7010592--7010624 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
7010582 GTTATGTACT
7010592 AAAATAATATA-A
1 AAAATAATATACA
*
7010604 AAAATAAAATACA
1 AAAATAATATACA
7010617 AAAATAAT
1 AAAATAAT
7010625 TTATTTTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 10 0.56
13 8 0.44
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (13 bp):
AAAATAATATACA
Found at i:7022079 original size:70 final size:70
Alignment explanation
Indices: 7021966--7022106 Score: 273
Period size: 70 Copynumber: 2.0 Consensus size: 70
7021956 GATCAGCAGG
7021966 AAAAGAAAGAACATTCCAAGCATAAGGGAATGTAAGCAAATCAATGCTTTCCTTTGCCTTTTGCA
1 AAAAGAAAGAACATTCCAAGCATAAGGGAATGTAAGCAAATCAATGCTTTCCTTTGCCTTTTGCA
7022031 TCATT
66 TCATT
*
7022036 AAAAGAAAGAAGATTCCAAGCATAAGGGAATGTAAGCAAATCAATGCTTTCCTTTGCCTTTTGCA
1 AAAAGAAAGAACATTCCAAGCATAAGGGAATGTAAGCAAATCAATGCTTTCCTTTGCCTTTTGCA
7022101 TCATT
66 TCATT
7022106 A
1 A
7022107 TAATGTTCAT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (70 bp):
AAAAGAAAGAACATTCCAAGCATAAGGGAATGTAAGCAAATCAATGCTTTCCTTTGCCTTTTGCA
TCATT
Found at i:7026159 original size:46 final size:47
Alignment explanation
Indices: 7026094--7026226 Score: 198
Period size: 46 Copynumber: 2.9 Consensus size: 47
7026084 TTATCTTTGG
* * * *
7026094 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
*
7026140 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
*
7026186 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTT
7026227 CATTTCAGAA
Statistics
Matches: 78, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
45 5 0.06
46 70 0.90
47 3 0.04
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.43
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
Found at i:7028382 original size:11 final size:11
Alignment explanation
Indices: 7028366--7028391 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7028356 ATATATACTA
7028366 AATAAAATAAT
1 AATAAAATAAT
7028377 AATAAAATAAT
1 AATAAAATAAT
7028388 AATA
1 AATA
7028392 TATCATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:7035226 original size:11 final size:11
Alignment explanation
Indices: 7035210--7035240 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7035200 TTAGTTTCAA
*
7035210 AAAAAGAAAAT
1 AAAAAGAAAAG
7035221 AAAAAGAAAAG
1 AAAAAGAAAAG
7035232 AAAAAGAAA
1 AAAAAGAAA
7035241 CAGGAGAGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:7036660 original size:44 final size:45
Alignment explanation
Indices: 7036612--7036711 Score: 116
Period size: 44 Copynumber: 2.2 Consensus size: 45
7036602 TTAGCCACTG
**
7036612 GTCTTATC-TCTCTAAAGTAGC-AAGAGAGCAGGTTGAAAA-TACAA
1 GTCTTATCTTCT-TAAAGTAGCAAAGA-AGCAGACTGAAAATTACAA
* *
7036656 GTCTTATCTTCTTGAGGTAGCAAAGAAGCAGACTGAAAATTACAA
1 GTCTTATCTTCTTAAAGTAGCAAAGAAGCAGACTGAAAATTACAA
*
7036701 ATCTTATCTTC
1 GTCTTATCTTC
7036712 ATGTATCGGC
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
44 26 0.54
45 22 0.46
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (45 bp):
GTCTTATCTTCTTAAAGTAGCAAAGAAGCAGACTGAAAATTACAA
Found at i:7036731 original size:45 final size:45
Alignment explanation
Indices: 7036691--7036778 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 45
7036681 AAGCAGACTG
* *
7036691 AAAATTACAAATCTTATCT-TCATGTATCGGCTATGGAGCAGATCA
1 AAAATGACAAATCTTATCTCT-ATGTATCAGCTATGGAGCAGATCA
* * *
7036736 AAAATGGCGAGTCTTATCTCTATGTATCAGCTATGGAGCAGAT
1 AAAATGACAAATCTTATCTCTATGTATCAGCTATGGAGCAGAT
7036779 TTTAGCCATC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
45 36 0.97
46 1 0.03
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (45 bp):
AAAATGACAAATCTTATCTCTATGTATCAGCTATGGAGCAGATCA
Found at i:7036812 original size:178 final size:178
Alignment explanation
Indices: 7036510--7038207 Score: 1620
Period size: 178 Copynumber: 9.4 Consensus size: 178
7036500 GGGTAACAGG
* * * *
7036510 CTGAAAATTACAGATCTTATC-TCTATGTATCGGCTATGGAGTAGATCGAAAATGGTGAGTCTTA
1 CTGAAAATTACAAATCTTATCTTC-ATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTA
** *
7036574 TCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTGGTCTTATCTCTCTAAAGTAGCAAGAGA
65 TCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTAAGGTAGCAAGAGA
* *
7036639 GCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAAGAAGCAGA
130 GCAGGTTGAAAATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
7036688 CTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
1 CTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
* * *
7036753 CTCTATGTATCAGCTATGGAGCAGATTTTAGCCATCAGTCTTATCTCTCTAAGGTAGCAAGAGAG
66 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTAAGGTAGCAAGAGAG
* * *
7036818 TAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTATCAAGGAAGCAGA
131 CAGGTTGAAAATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
* * * * *
7036866 CTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGAAGCAGATCAGAAATGGTGAGTCTTAT
1 CTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
* * * *
7036931 CTCTATGTATCGGCTATGGAGCAGATTTTAGCAACCAGCCTTATCTCTCTGAGGTAGCAAGAGAG
66 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTAAGGTAGCAAGAGAG
* *
7036996 CAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTATCAAGGAAGCAGA
131 CAGGTTGAAAATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
* * * *
7037044 CTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAACAGATCAAAAATGGTGAGTCTTAT
1 CTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
** *
7037109 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTGGTCTTATCTCTCTAAAGTAGCAAGAGAG
66 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTAAGGTAGCAAGAGAG
* *
7037174 CAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAAGAAGCAGA
131 CAGGTTGAAAATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
7037222 CTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
1 CTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
* * ** ** * * **
7037287 CTCTATGTATCAGCTATGGAGCAGATAACT-GAAAATTACAGATCTTATCTACATGTATCG--GC
66 CTCCATGTATCGGCTATGGAGCAGAT-TTTAG-CCA--CCAG-TCTTATCT-C-TCTAAGGTAGC
* * * * * * * *
7037349 TATAGAGCA-GATCAGAAATGGCGAGTCTTATC-TCCATGTA--TCGGCTATGG-AGCAGA
124 AAGAGAGCAGGTTGA-AAAT-ACAAGTCTTATCTTCC-TG-AGGT-AGC-AAGGAAGCAGA
*** *** * * * * * ** * * * *
7037405 -TTTTAGCCACCAGTCTTATCTCTC-TG-AGGT-AGC-AAGAGAGCAGGTTGAAGAT-ACAAGTA
1 CTGAAAATTACAAATCTTATCT-TCATGTA--TCGGCTATG-GAGCAGATCAAAAATGGCGAGTC
* * * *** *** *
7037464 TTATCTTCC-TG-AGGT-AGC-AAGGAAGCAAACTGGAAATTA-CAGATCTTATCTC-C--ATGT
62 TTATC-TCCATGTA--TCGGCTATGG-AGCAGA-TTTTAGCCACCAG-TCTTATCTCTCTAAGGT
* * * ** *** * *
7037521 ATCGGCTATG-GAACAGATCAAAAATGGTGAGTCTTATC-TCCATGTA--TCGGCTATGG-AGCA
121 A---GC-AAGAGAGCAGGTTGAAAAT-ACAAGTCTTATCTTCC-TG-AGGT-AGC-AAGGAAGCA
7037581 GA
177 GA
*** *** * * * *
7037583 -TTTTAGCCACCAGTCTTATCTCTCTCATGTATCGGCTATGGAACAGATCGAAAATGGCGAGTCT
1 CTGAAAATTACAAATCTTA--TCT-TCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCT
* * *
7037647 TATCTCCATGTATCGGCTATGGAGAAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGA
63 TATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTAAGGTAGCAAGA
** *
7037712 GAGCATATTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
128 GAGCAGGTTGAAAATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
* * * * * *
7037763 CTGAAAATTACAGATCTTATCTCCATGTATCAGCTATGGAGTAGATAAAAAATGGCGAGTTTTAT
1 CTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
* *
7037828 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAG
66 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTAAGGTAGCAAGAGAG
*
7037893 CAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
131 CAGGTTGAAAATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
* * * *
7037941 CT-AAAGATTACAGATCATATCTCCATGTATCGGCTATGAAGCAGATTATGGAGCAGATCAGAAA
1 CTGAAA-ATTACAAATCTTATCTTCATGTAT---C---G--GC----TATGGAGCAGATCAAAAA
* *
7038005 TAGTGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTAA
53 TGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTAA
* * *
7038070 AGTAGCAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAAGAAGCAGA
118 GGTAGCAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
7038131 CTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
1 CTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
*
7038196 CTCTATGTATCG
66 CTCCATGTATCG
7038208 AACAGATCGA
Statistics
Matches: 1277, Mismatches: 177, Indels: 132
0.81 0.11 0.08
Matches are distributed among these distances:
173 1 0.00
177 4 0.00
178 861 0.67
179 12 0.01
180 32 0.03
181 83 0.06
182 83 0.06
183 28 0.02
184 12 0.01
186 2 0.00
187 1 0.00
190 155 0.12
191 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (178 bp):
CTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTAAGGTAGCAAGAGAG
CAGGTTGAAAATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
Found at i:7037194 original size:44 final size:45
Alignment explanation
Indices: 7037146--7037245 Score: 116
Period size: 44 Copynumber: 2.2 Consensus size: 45
7037136 TTAGCCACTG
**
7037146 GTCTTATC-TCTCTAAAGTAGC-AAGAGAGCAGGTTGAAAA-TACAA
1 GTCTTATCTTCT-TAAAGTAGCAAAGA-AGCAGACTGAAAATTACAA
* *
7037190 GTCTTATCTTCTTGAGGTAGCAAAGAAGCAGACTGAAAATTACAA
1 GTCTTATCTTCTTAAAGTAGCAAAGAAGCAGACTGAAAATTACAA
*
7037235 ATCTTATCTTC
1 GTCTTATCTTC
7037246 ATGTATCGGC
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
44 26 0.54
45 22 0.46
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (45 bp):
GTCTTATCTTCTTAAAGTAGCAAAGAAGCAGACTGAAAATTACAA
Found at i:7037265 original size:45 final size:44
Alignment explanation
Indices: 7037216--7037405 Score: 166
Period size: 45 Copynumber: 4.2 Consensus size: 44
7037206 GTAGCAAAGA
*
7037216 AGCAGACTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGG
1 AGCAGA-TGAAAATGACAAATCTTATCTTCATGTATCGGCTATGG
* * * * *
7037261 AGCAGATCAAAAATGGCGAGTCTTATC-TCTATGTATCAGCTATGG
1 AGCAGAT-GAAAATGACAAATCTTATCTTC-ATGTATCGGCTATGG
* * * *
7037306 AGCAGATAACTGAAAATTACAGATCTTATCTACATGTATCGGCTATAG
1 AGCAG---A-TGAAAATGACAAATCTTATCTTCATGTATCGGCTATGG
* * * * *
7037354 AGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGG
1 AGCAGATGA-AAATGACAAATCTTATCTTCATGTATCGGCTATGG
7037399 AGCAGAT
1 AGCAGAT
7037406 TTTAGCCACC
Statistics
Matches: 114, Mismatches: 23, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
44 5 0.04
45 75 0.66
48 32 0.28
49 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (44 bp):
AGCAGATGAAAATGACAAATCTTATCTTCATGTATCGGCTATGG
Found at i:7037332 original size:93 final size:93
Alignment explanation
Indices: 7037221--7037405 Score: 316
Period size: 93 Copynumber: 2.0 Consensus size: 93
7037211 AAAGAAGCAG
* *
7037221 ACTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTA
1 ACTGAAAATTACAAATCTTATCTACATGTATCGGCTATAGAGCAGATCAAAAATGGCGAGTCTTA
*
7037286 TCTCTATGTATCAGCTATGGAGCAGATA
66 TCTCCATGTATCAGCTATGGAGCAGATA
* *
7037314 ACTGAAAATTACAGATCTTATCTACATGTATCGGCTATAGAGCAGATCAGAAATGGCGAGTCTTA
1 ACTGAAAATTACAAATCTTATCTACATGTATCGGCTATAGAGCAGATCAAAAATGGCGAGTCTTA
*
7037379 TCTCCATGTATCGGCTATGGAGCAGAT
66 TCTCCATGTATCAGCTATGGAGCAGAT
7037406 TTTAGCCACC
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 86 1.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (93 bp):
ACTGAAAATTACAAATCTTATCTACATGTATCGGCTATAGAGCAGATCAAAAATGGCGAGTCTTA
TCTCCATGTATCAGCTATGGAGCAGATA
Found at i:7037557 original size:45 final size:45
Alignment explanation
Indices: 7037507--7037669 Score: 193
Period size: 45 Copynumber: 3.6 Consensus size: 45
7037497 AAATTACAGA
*
7037507 TCTTATCTCCATGTATCGGCTATGGAACAGATCAAAAATGGTGAG
1 TCTTATCTCCATGTATCGGCTATGGAACAGATCAAAAATGGCGAG
* *** **** *
7037552 TCTTATCTCCATGTATCGGCTATGGAGCAGAT-TTTAGCCACCAG
1 TCTTATCTCCATGTATCGGCTATGGAACAGATCAAAAATGGCGAG
*
7037596 TCTTATCTCTCTCATGTATCGGCTATGGAACAGATCGAAAATGGCGAG
1 TCTTA--TCTC-CATGTATCGGCTATGGAACAGATCAAAAATGGCGAG
7037644 TCTTATCTCCATGTATCGGCTATGGA
1 TCTTATCTCCATGTATCGGCTATGGA
7037670 GAAAATTTTA
Statistics
Matches: 95, Mismatches: 19, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
44 8 0.08
45 48 0.51
46 8 0.08
47 22 0.23
48 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (45 bp):
TCTTATCTCCATGTATCGGCTATGGAACAGATCAAAAATGGCGAG
Found at i:7037622 original size:47 final size:44
Alignment explanation
Indices: 7037550--7037696 Score: 150
Period size: 47 Copynumber: 3.2 Consensus size: 44
7037540 AAAAATGGTG
7037550 AGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACC
1 AGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACC
* *** **** *
7037594 AGTCTTATCTCTCTCATGTATCGGCTATGGAACAGATCGAAAATGGCG
1 AGTCTTA--TCTC-CATGTATCGGCTATGGAGCAGAT-TTTAGCCACC
* *
7037642 AGTCTTATCTCCATGTATCGGCTATGGAGAAAATTTTAGCCACC
1 AGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACC
*
7037686 AGCCTTATCTC
1 AGTCTTATCTC
7037697 TCTAAGGTAG
Statistics
Matches: 78, Mismatches: 21, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
44 19 0.24
45 20 0.26
46 8 0.10
47 22 0.28
48 9 0.12
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (44 bp):
AGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACC
Found at i:7037678 original size:92 final size:92
Alignment explanation
Indices: 7037512--7037699 Score: 324
Period size: 92 Copynumber: 2.1 Consensus size: 92
7037502 ACAGATCTTA
*
7037512 TCTC-CATGTATCGGCTATGGAACAGATCAAAAATGGTGAGTCTTATCTCCATGTATCGGCTATG
1 TCTCTCATGTATCGGCTATGGAACAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATG
* * *
7037576 GAGCAGATTTTAGCCACCAGTCTTATC
66 GAGAAAATTTTAGCCACCAGCCTTATC
*
7037603 TCTCTCATGTATCGGCTATGGAACAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGCTATG
1 TCTCTCATGTATCGGCTATGGAACAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATG
7037668 GAGAAAATTTTAGCCACCAGCCTTATC
66 GAGAAAATTTTAGCCACCAGCCTTATC
7037695 TCTCT
1 TCTCT
7037700 AAGGTAGCAA
Statistics
Matches: 91, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
91 4 0.04
92 87 0.96
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (92 bp):
TCTCTCATGTATCGGCTATGGAACAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATG
GAGAAAATTTTAGCCACCAGCCTTATC
Found at i:7037740 original size:270 final size:269
Alignment explanation
Indices: 7037063--7037877 Score: 1208
Period size: 270 Copynumber: 3.0 Consensus size: 269
7037053 ACAGATCTTA
*
7037063 TCTC-CATGTATCGGCTATGGAACAGATCAAAAATGGTGAGTCTTATCTCCATGTATCGGCTATG
1 TCTCTCATGTATCGGCTATGGAACAGATC-AAAATGGCGAGTCTTATCTCCATGTATCGGCTATG
** * *
7037127 GAGCAGATTTTAGCCACTGGTCTTATCTCTCTAAAGTAGCAAGAGAGCAGGTTGAAAATACAAGT
65 GAGCAGATTTTAGCCACCAGTCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACAAGT
* * * *
7037192 CTTATCTTCTTGAGGTAGCAAAGAAGCAGACTGAAAATTACAAATCTTATCTTCATGTATCGGCT
130 CTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCT
* * ** **
7037257 ATGGAGCAGATCAAAAATGGCGAGTCTTATCTCTATGTATCAGCTATGGAGCAGATAACT-GAAA
195 ATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGAT-TTTAG-CC
*
7037321 ATTACAGATCTTA--
258 A--CCAG-TCTTATC
* * *
7037334 TCT-ACATGTATCGGCTATAGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATG
1 TCTCTCATGTATCGGCTATGGAACAGATCA-AAATGGCGAGTCTTATCTCCATGTATCGGCTATG
*
7037398 GAGCAGATTTTAGCCACCAGTCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGT
65 GAGCAGATTTTAGCCACCAGTCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACAAGT
* * *
7037463 ATTATCTTCCTGAGGTAGCAAGGAAGCAAACTGGAAATTACAGATCTTATCTCCATGTATCGGCT
130 CTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCT
* *
7037528 ATGGAACAGATCAAAAATGGTGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCAC
195 ATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCAC
7037593 CAGTCTTATC
260 CAGTCTTATC
7037603 TCTCTCATGTATCGGCTATGGAACAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGCTATG
1 TCTCTCATGTATCGGCTATGGAACAGATC-AAAATGGCGAGTCTTATCTCCATGTATCGGCTATG
* * * **
7037668 GAGAAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCATATTGAAGATACAAGT
65 GAGCAGATTTTAGCCACCAGTCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACAAGT
*
7037733 CTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCAGCT
130 CTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCT
* * *
7037798 ATGGAGTAGATAAAAAATGGCGAGTTTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCAC
195 ATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCAC
*
7037863 CAGCCTTATC
260 CAGTCTTATC
7037873 TCTCT
1 TCTCT
7037878 GAGGTAGCAA
Statistics
Matches: 494, Mismatches: 43, Indels: 15
0.89 0.08 0.03
Matches are distributed among these distances:
267 5 0.01
268 3 0.01
269 3 0.01
270 253 0.51
271 230 0.47
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (269 bp):
TCTCTCATGTATCGGCTATGGAACAGATCAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGG
AGCAGATTTTAGCCACCAGTCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTC
TTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTA
TGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACC
AGTCTTATC
Found at i:7038102 original size:44 final size:45
Alignment explanation
Indices: 7038054--7038154 Score: 118
Period size: 44 Copynumber: 2.3 Consensus size: 45
7038044 TTTAGCCACC
**
7038054 AGTCTTATC-TCTCTAAAGTAGC-AAGAGAGCAGGTTGAAAA-TACA
1 AGTCTTATCTTCT-TAAAGTAGCAAAGA-AGCAGACTGAAAATTACA
* *
7038098 AGTCTTATCTTCTTGAGGTAGCAAAGAAGCAGACTGAAAATTACA
1 AGTCTTATCTTCTTAAAGTAGCAAAGAAGCAGACTGAAAATTACA
*
7038143 AATCTTATCTTC
1 AGTCTTATCTTC
7038155 ATGTATCGGC
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
44 27 0.55
45 22 0.45
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.29
Consensus pattern (45 bp):
AGTCTTATCTTCTTAAAGTAGCAAAGAAGCAGACTGAAAATTACA
Found at i:7038120 original size:190 final size:190
Alignment explanation
Indices: 7037819--7038176 Score: 601
Period size: 190 Copynumber: 1.9 Consensus size: 190
7037809 AAAAAATGGC
* * *
7037819 GAGTTTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTA
1 GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAAGTA
* *
7037884 GCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACT-AAAGA
66 GCAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCCTGAGGTAGCAAAGAAGCAGACTGAAA-A
*
7037948 TTACAGATCATATCTCCATGTATCGGCTATGAAGCAGATTATGGAGCAGATCAGAAATAGT
130 TTACAAATCATATCTCCATGTATCGGCTATGAAGCAGATTATGGAGCAGATCAGAAATAGT
*
7038009 GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTAAAGTA
1 GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAAGTA
*
7038074 GCAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAAGAAGCAGACTGAAAAT
66 GCAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCCTGAGGTAGCAAAGAAGCAGACTGAAAAT
* * *
7038139 TACAAATCTTATCTTCATGTATCGGCTATGGAGCAGAT
131 TACAAATCATATCTCCATGTATCGGCTATGAAGCAGAT
7038177 CAAAAATGGC
Statistics
Matches: 156, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
190 153 0.98
191 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (190 bp):
GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAAGTA
GCAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCCTGAGGTAGCAAAGAAGCAGACTGAAAAT
TACAAATCATATCTCCATGTATCGGCTATGAAGCAGATTATGGAGCAGATCAGAAATAGT
Found at i:7038194 original size:45 final size:45
Alignment explanation
Indices: 7038145--7038259 Score: 147
Period size: 38 Copynumber: 2.7 Consensus size: 45
7038135 AAATTACAAA
7038145 TCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
1 TCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
*
7038190 TCTTATC-TCTATGTATC-G--A---A-CAGATCGAAAATGGCGAG
1 TCTTATCTTC-ATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
*
7038228 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
1 TCTTATCTTCATGTATCGGCTATGGAGCAGAT
7038260 TTTAGCCACC
Statistics
Matches: 59, Mismatches: 2, Indels: 18
0.75 0.03 0.23
Matches are distributed among these distances:
38 31 0.53
39 3 0.05
41 1 0.02
42 1 0.02
44 4 0.07
45 19 0.32
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (45 bp):
TCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
Found at i:7038318 original size:44 final size:45
Alignment explanation
Indices: 7038270--7038370 Score: 118
Period size: 44 Copynumber: 2.3 Consensus size: 45
7038260 TTTAGCCACC
**
7038270 AGTCTTATC-TCTCTAAAGTAGC-AAGAGAGCAGGTTGAAAA-TACA
1 AGTCTTATCTTCT-TAAAGTAGCAAAGA-AGCAGACTGAAAATTACA
* *
7038314 AGTCTTATCTTCTTGAGGTAGCAAAGAAGCAGACTGAAAATTACA
1 AGTCTTATCTTCTTAAAGTAGCAAAGAAGCAGACTGAAAATTACA
*
7038359 AATCTTATCTTC
1 AGTCTTATCTTC
7038371 ATGTATCGGC
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
44 27 0.55
45 22 0.45
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.29
Consensus pattern (45 bp):
AGTCTTATCTTCTTAAAGTAGCAAAGAAGCAGACTGAAAATTACA
Found at i:7038390 original size:45 final size:45
Alignment explanation
Indices: 7038357--7038482 Score: 166
Period size: 45 Copynumber: 2.8 Consensus size: 45
7038347 CTGAAAATTA
7038357 CAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGG
1 CAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGG
* * *
7038402 CAGATCTTATC-TCTATGTATCAGAC-ATAGAGCAGATCAAAAATGG
1 CAAATCTTATCTTC-ATGTATC-GGCTATGGAGCAGATCAAAAATGG
* * *
7038447 CGAGTCTTATCTCCATGTATCGGCTATGGAGCAGAT
1 CAAATCTTATCTTCATGTATCGGCTATGGAGCAGAT
7038483 TTTAGCCACT
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
44 4 0.06
45 61 0.90
46 3 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.29
Consensus pattern (45 bp):
CAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGG
Found at i:7038542 original size:44 final size:45
Alignment explanation
Indices: 7038494--7038593 Score: 116
Period size: 44 Copynumber: 2.2 Consensus size: 45
7038484 TTAGCCACTG
**
7038494 GTCTTATC-TCTCTAAAGTAGC-AAGAGAGCAGGTTGAAAA-TACAA
1 GTCTTATCTTCT-TAAAGTAGCAAAGA-AGCAGACTGAAAATTACAA
* *
7038538 GTCTTATCTTCTTGAGGTAGCAAAGAAGCAGACTGAAAATTACAA
1 GTCTTATCTTCTTAAAGTAGCAAAGAAGCAGACTGAAAATTACAA
*
7038583 ATCTTATCTTC
1 GTCTTATCTTC
7038594 ATGTATCGGC
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
44 26 0.54
45 22 0.46
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (45 bp):
GTCTTATCTTCTTAAAGTAGCAAAGAAGCAGACTGAAAATTACAA
Found at i:7038545 original size:178 final size:177
Alignment explanation
Indices: 7038386--7038746 Score: 498
Period size: 178 Copynumber: 2.0 Consensus size: 177
7038376 TCGGCTATGG
* *
7038386 AGCAGA-TCAAAAATGGCAGATCTTATC-TCTATGTATCAGAC-ATAGAGCAGATCAAAAATGGC
1 AGCAGACT-AAAAATGACAAATCTTATCTTC-ATGTATC-GACTATAGAGCAGATCAAAAATGGC
* *
7038448 GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA-CTGGTCTTATCTCTCTAAAGT
63 GAGTCTTATCTCCATGTATCAGCTATGGAGCAGATTTTAGCCATC-AGTCTTATCTCTCTAAAGT
*
7038512 AGCAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAAGA
127 AGCAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCATGA-GTAGCAAAGA
* * * *
7038564 AGCAGACTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
1 AGCAGACTAAAAATGACAAATCTTATCTTCATGTATCGACTATAGAGCAGATCAAAAATGGCGAG
* *
7038629 TCTTATCTCTATGTATCAGCTATGGAGCAGATTTTAGCCATCAGTCTTATCTCTCTAAGGTAGCA
66 TCTTATCTCCATGTATCAGCTATGGAGCAGATTTTAGCCATCAGTCTTATCTCTCTAAAGTAGCA
* * *
7038694 AGAGAGTAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGC-AAGA
131 AGAGAGCAGGTTGAAAATACAAGTCTTATCTTCATGA-GTAGCAAAGA
7038741 GAGCAG
1 -AGCAG
7038747 GTTGAAGATA
Statistics
Matches: 165, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
177 6 0.04
178 155 0.94
179 4 0.02
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (177 bp):
AGCAGACTAAAAATGACAAATCTTATCTTCATGTATCGACTATAGAGCAGATCAAAAATGGCGAG
TCTTATCTCCATGTATCAGCTATGGAGCAGATTTTAGCCATCAGTCTTATCTCTCTAAAGTAGCA
AGAGAGCAGGTTGAAAATACAAGTCTTATCTTCATGAGTAGCAAAGA
Found at i:7038605 original size:223 final size:222
Alignment explanation
Indices: 7037991--7038867 Score: 1253
Period size: 223 Copynumber: 4.0 Consensus size: 222
7037981 GCAGATTATG
* * *
7037991 GAGCAGATCAGAAATAGTGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAG
1 GAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAG
7038056 TCTTATCTCTCTAAAGTAGCAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCA
66 TCTTATCTCTCTAAAGTAGCAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCA
7038121 AAGAAGCAGACTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGG
131 AAGAAGCAGACTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGG
7038186 CGAGTCTTATCTCTATGTATC-G---A
196 CGAGTCTTATCTCTATGTATCAGCATA
*
7038209 -A-CAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAG
1 GAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAG
7038272 TCTTATCTCTCTAAAGTAGCAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCA
66 TCTTATCTCTCTAAAGTAGCAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCA
7038337 AAGAAGCAGACTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGG
131 AAGAAGCAGACTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGG
7038402 C-AGATCTTATCTCTATGTATCAGACATA
196 CGAG-TCTTATCTCTATGTATCAG-CATA
**
7038430 GAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTGG
1 GAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAG
7038495 TCTTATCTCTCTAAAGTAGCAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCA
66 TCTTATCTCTCTAAAGTAGCAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCA
7038560 AAGAAGCAGACTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGG
131 AAGAAGCAGACTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGG
*
7038625 CGAGTCTTATCTCTATGTATCAGCTATG
196 CGAGTCTTATCTCTATGTATCAGC-ATA
* *** * * * * ** *
7038653 GAGCAGATTTTAGCCAT--C-AGTCTTATCTCTCTAAGGTA---GC-AAGAGAGTAGGTTGAAGA
1 GAGCAGA--TCAAAAATGGCGAGTCTTATCTC-C--ATGTATCGGCTATG-GAGCAGATTTTAGC
* * * * * *
7038711 TACAAGTCTTATCT-TCCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGA
60 CACCAGTCTTATCTCT-CTAAAGTAGCAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGA
* * * * * * *
7038775 GGTAGCAATGAAACAGACTGAAAATTATAGATCATATCTCCATGTATCGTCTATGGAGCAGATCA
124 GGTAGCAAAGAAGCAGACTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCA
* * *
7038840 GAAATGGCGAGCCTTATCTCCATGTATC
189 AAAATGGCGAGTCTTATCTCTATGTATC
7038868 GGCTATGGAG
Statistics
Matches: 606, Mismatches: 36, Indels: 30
0.90 0.05 0.04
Matches are distributed among these distances:
215 2 0.00
216 206 0.34
217 2 0.00
221 4 0.01
222 162 0.27
223 220 0.36
224 2 0.00
225 8 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (222 bp):
GAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAG
TCTTATCTCTCTAAAGTAGCAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCA
AAGAAGCAGACTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGG
CGAGTCTTATCTCTATGTATCAGCATA
Found at i:7038613 original size:45 final size:45
Alignment explanation
Indices: 7038573--7038660 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 45
7038563 AAGCAGACTG
* *
7038573 AAAATTACAAATCTTATCT-TCATGTATCGGCTATGGAGCAGATCA
1 AAAATGACAAATCTTATCTCT-ATGTATCAGCTATGGAGCAGATCA
* * *
7038618 AAAATGGCGAGTCTTATCTCTATGTATCAGCTATGGAGCAGAT
1 AAAATGACAAATCTTATCTCTATGTATCAGCTATGGAGCAGAT
7038661 TTTAGCCATC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
45 36 0.97
46 1 0.03
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (45 bp):
AAAATGACAAATCTTATCTCTATGTATCAGCTATGGAGCAGATCA
Found at i:7038719 original size:44 final size:44
Alignment explanation
Indices: 7038671--7038782 Score: 190
Period size: 44 Copynumber: 2.5 Consensus size: 44
7038661 TTTAGCCATC
* *
7038671 AGTCTTATC-TCTCTAAGGTAGCAAGAGAGTAGGTTGAAGATACA
1 AGTCTTATCTTC-CTGAGGTAGCAAGAGAGCAGGTTGAAGATACA
7038715 AGTCTTATCTTCCTGAGGTAGCAAGAGAGCAGGTTGAAGATACA
1 AGTCTTATCTTCCTGAGGTAGCAAGAGAGCAGGTTGAAGATACA
7038759 AGTCTTATCTTCCTGAGGTAGCAA
1 AGTCTTATCTTCCTGAGGTAGCAA
7038783 TGAAACAGAC
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
44 63 0.97
45 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (44 bp):
AGTCTTATCTTCCTGAGGTAGCAAGAGAGCAGGTTGAAGATACA
Found at i:7038835 original size:222 final size:219
Alignment explanation
Indices: 7038010--7038946 Score: 1074
Period size: 222 Copynumber: 4.2 Consensus size: 219
7038000 AGAAATAGTG
* * ** * *
7038010 AGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTAAAGTAG
1 AGTCTTATCTCCAGGTA-C-GCTAAGGAGCAGATTGAAGACACAAGTCTTATCTCTCTAAAGTAG
7038075 CAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAAGAAGCAGACTGAAAATT
64 CAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAAGAAGCAGACTGAAAATT
7038140 ACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCTATGTA
129 ACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCTATGTA
* * *** * *
7038205 TCGAACA--GATC-GAAAAT-GGC--G
194 TC-AGCATGGAGCAGATTTTAGCCATC
* * ** * *
7038226 AGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTAAAGTAG
1 AGTCTTATCTCCAGGTA-C-GCTAAGGAGCAGATTGAAGACACAAGTCTTATCTCTCTAAAGTAG
7038291 CAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAAGAAGCAGACTGAAAATT
64 CAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAAGAAGCAGACTGAAAATT
7038356 ACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGC-AGATCTTATCTCTATGT
129 ACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG-TCTTATCTCTATGT
* * ***
7038420 ATCAGACATAGAGCAGA--TCAAAAATGGC
193 ATCAG-CATGGAGCAGATTTTAGCCAT--C
* * ** * **
7038448 GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTGGTCTTATCTCTCTAAAGTA
1 -AGTCTTATCTCCAGGTA-C-GCTAAGGAGCAGATTGAAGACACAAGTCTTATCTCTCTAAAGTA
7038513 GCAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAAGAAGCAGACTGAAAAT
63 GCAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAAGAAGCAGACTGAAAAT
7038578 TACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCTATGT
128 TACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCTATGT
7038643 ATCAGCTATGGAGCAGATTTTAGCCATC
193 ATCAGC-ATGGAGCAGATTTTAGCCATC
* * * * *
7038671 AGTCTTATCTCTCTAAGGTA-GC-AAGAGAGTAGGTTGAAGATACAAGTCTTATCT-TCCTGAGG
1 AGTCTTATCTC-C--AGGTACGCTAAG-GAGCAGATTGAAGACACAAGTCTTATCTCT-CTAAAG
* * * *
7038733 TAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAATGAAACAGACTGAAA
61 TAGCAAGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAAGAAGCAGACTGAAA
* * * * * * * *
7038798 ATTATAGATCATATCTCCATGTATCGTCTATGGAGCAGATCAGAAATGGCGAGCCTTATCTCCAT
126 ATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCTAT
* * * *
7038863 GTATCGGCTATGGAGAAAATTTTAGCCACC
191 GTATCAGC-ATGGAGCAGATTTTAGCCATC
* * *
7038893 AGCCTTATCTCTCTAAGGTA-GC-AAGAGAGCATATTGAAGATACAAGTCTTATCT
1 AGTCTTATCTC-C--AGGTACGCTAAG-GAGCAGATTGAAGACACAAGTCTTATCT
7038947 TCCTGAGGTA
Statistics
Matches: 654, Mismatches: 47, Indels: 34
0.89 0.06 0.05
Matches are distributed among these distances:
215 3 0.00
216 196 0.30
218 3 0.00
219 2 0.00
221 3 0.00
222 232 0.35
223 205 0.31
224 2 0.00
225 8 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (219 bp):
AGTCTTATCTCCAGGTACGCTAAGGAGCAGATTGAAGACACAAGTCTTATCTCTCTAAAGTAGCA
AGAGAGCAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAAGAAGCAGACTGAAAATTAC
AAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCTATGTATC
AGCATGGAGCAGATTTTAGCCATC
Found at i:7039081 original size:222 final size:220
Alignment explanation
Indices: 7038510--7039060 Score: 648
Period size: 222 Copynumber: 2.5 Consensus size: 220
7038500 TCTCTCTAAA
** * * * *
7038510 GTAGCAAGAGAGCAGGTTGAAA-ATACAAGTCTTATCTTCTTGAGGTAGCAAAGAAGCAGACTGA
1 GTAGCAAGAGAGCAGACT-AAAGATACAAGTCATATCTTCCTGA-GTAGCAATGAAACAGACTGA
* * * * * * *
7038574 AAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCT
64 AAATTAGAGATCATATCTCCATGTATCGGCTATGGAGCAGATCAGAAAT-GCGAGCCTTATCTCC
* * * * * *
7038639 ATGTATCAGCTATGGAGCAGATTTTAGCCATCAGTCTTATCTCTCTAAGGTAGCAAGAGAGTAGG
128 ATGTATCAGCTATGGAGAAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGA
7038704 TTGAAGATACAAGTCTTATCTTCCTGAG
193 TTGAAGATACAAGTCTTATCTTCCTGAG
** * *
7038732 GTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAATGAAACAGACTGAA
1 GTAGCAAGAGAGCAGACTAAAGATACAAGTCATATCTTCCTGA-GTAGCAATGAAACAGACTGAA
* *
7038797 AATTATAGATCATATCTCCATGTATCGTCTATGGAGCAGATCAGAAATGGCGAGCCTTATCTCCA
65 AATTAGAGATCATATCTCCATGTATCGGCTATGGAGCAGATCAGAAAT-GCGAGCCTTATCTCCA
* *
7038862 TGTATCGGCTATGGAGAAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCATAT
129 TGTATCAGCTATGGAGAAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGAT
7038927 TGAAGATACAAGTCTTATCTTCCTGAG
194 TGAAGATACAAGTCTTATCTTCCTGAG
* * *
7038954 GTAGCAAG-GAAGCAGACTAAAGATTAC-AGATCATATC-TCCATGTA-TCGGCTATGAAGCAGA
1 GTAGCAAGAG-AGCAGACTAAAGA-TACAAG-TCATATCTTCC-TG-AGT-AGCAATGAAACAGA
* *
7039015 -TCGAAAA-TAGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGAT
60 CT-GAAAATTAGAGA-TCATATCTCCATGTATCGGCTATGGAGCAGAT
7039061 TTTAGCCATC
Statistics
Matches: 289, Mismatches: 31, Indels: 17
0.86 0.09 0.05
Matches are distributed among these distances:
221 3 0.01
222 228 0.79
223 57 0.20
224 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (220 bp):
GTAGCAAGAGAGCAGACTAAAGATACAAGTCATATCTTCCTGAGTAGCAATGAAACAGACTGAAA
ATTAGAGATCATATCTCCATGTATCGGCTATGGAGCAGATCAGAAATGCGAGCCTTATCTCCATG
TATCAGCTATGGAGAAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGATTG
AAGATACAAGTCTTATCTTCCTGAG
Found at i:7039255 original size:178 final size:175
Alignment explanation
Indices: 7038718--7039216 Score: 705
Period size: 178 Copynumber: 2.8 Consensus size: 175
7038708 AGATACAAGT
7038718 CTTATCT-TCCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCA
1 CTTATCTCT-CTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCA
* * * *
7038782 ATGAAACAGACTGAAAATTATAGATCATATCTCCATGTATCGTCTATGGAGCAGATCAGAAATGG
65 AGGAAGCAGACT-AAAATTAAAGATCATATCTCCATGTATCGACTATGGAGCAGATC-GAAATGG
* *
7038847 CGAGCCTTATCTCCATGTATCGGCTATGGAGA-AAATTTTAGCCACCAGC
128 CGAGCCTTATCTCCATGTATCGGCTATGGA-ACAGATTTTAG-CAACAGC
* **
7038896 CTTATCTCTCTAAGGTAGCAAGAGAGCATATTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAA
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAA
* * * *
7038961 GGAAGCAGACTAAAGATTACAGATCATATCTCCATGTATCGGCTATGAAGCAGATCGAAAATAGC
66 GGAAGCAGACTAAA-ATTAAAGATCATATCTCCATGTATCGACTATGGAGCAGATCG-AAATGGC
* * *
7039026 GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCATCAGC
129 GAGCCTTATCTCCATGTATCGGCTATGGAACAGATTTTAG-CAACAGC
*
7039074 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAA
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAA
* * *
7039139 GGAAGCAGACTAAATATTAAAGATCTTATCTCCATGTATCCACTATGGAGCAGATCGAAGACGGC
66 GGAAGCAGACTAAA-ATTAAAGATCATATCTCCATGTATCGACTATGGAGCAGATCGAA-ATGGC
*
7039204 GAACCTTATCTCC
129 GAGCCTTATCTCC
7039217 CTAAGCAGTA
Statistics
Matches: 289, Mismatches: 27, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
177 6 0.02
178 282 0.98
179 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (175 bp):
CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAA
GGAAGCAGACTAAAATTAAAGATCATATCTCCATGTATCGACTATGGAGCAGATCGAAATGGCGA
GCCTTATCTCCATGTATCGGCTATGGAACAGATTTTAGCAACAGC
Found at i:7039309 original size:400 final size:399
Alignment explanation
Indices: 7037603--7039255 Score: 1527
Period size: 400 Copynumber: 4.1 Consensus size: 399
7037593 CAGTCTTATC
* * * * * * *
7037603 TCTCTCATGTATCGGCT-ATGGAACAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGCTAT
1 TCTC-CATGTATCAG-TAATGGAGCAGATCGAAGACGGCGAGCCTTATCTCCATGTATAGGCTAA
* * * * *
7037667 GGAGAAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCATATTGAAGATACAAG
64 GGGGGAAA--TTA-CCA-CAGTCTTATCTCTCTAAGGTAGCAAGAGAGCAGATTGAAAATACAAG
*
7037732 TCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCAGC
125 TCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGC
* * * *
7037797 TATGGAGTAGATAAAAAATGGCGAGTTTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA
190 TATGAAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA
*
7037862 CCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGT
255 CCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGT
*
7037927 AGCAAGGAAGCAGACTAAAGATTAC-AGATCATATCTCCATGTATCGGCTATGAAGCAGATTATG
320 AGCAAGGAAGCAGACTAAAGATTACAAGATCTTATCTCCATGTATC--C-----A-C----TATG
* *
7037991 GAGCAGATCAGAAATAGTGAG-TCTTA
373 GAGCAGATCAGAAATGGCGAGATCTTA
* *** ** * * * * *
7038017 TCTCCATGTATCGGCT-ATGGAGCAGATTTTAG-CCACCAGTCTTATCT-C-TCTAAAGTAGCAA
1 TCTCCATGTATCAG-TAATGGAGCAGATCGAAGACGGCGAGCCTTATCTCCATGTATAG--GCTA
* * *
7038078 GAGAGCAGGTTGAAAATA-CA-AGTCTTATCT-TCTTGAGGTAGCAA-AGAAGCAGACTGAAAAT
63 -AG-G--GG--GAAATTACCACAGTCTTATCTCTC-TAAGGTAGCAAGAG-AGCAGATTGAAAA-
* * * * * **
7038139 TACAAATCTTATCTTCATGTA--TCGGCTATGG-AGCAGA-TCAAAAATGGC-GAGTCTTATCTC
119 TACAAGTCTTATCTTCCTG-AGGT-AGC-AAGGAAGCAGACT-GAAAATTACAGA-TCTTATCTC
* *
7038199 TATGTAT---C---GAA-CAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCA
179 CATGTATCGGCTATGAAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCA
* * *
7038257 GATTTTAGCCACCAGTCTTATCTCTCTAAAGTAGCAAGAGAGCAGGTTGAAAATACAAGTCTTAT
244 GATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTAT
* * * **
7038322 CTTCTTGAGGTAGCAAAGAAGCAGACTGAAA-ATTACAA-ATCTTATCTTCATGTATCGGCTATG
309 CTTCCTGAGGTAGCAAGGAAGCAGACT-AAAGATTACAAGATCTTATCTCCATGTATCCACTATG
*
7038385 GAGCAGATCAAAAATGGC-AGATCTTA
373 GAGCAGATCAGAAATGGCGAGATCTTA
* * * * * * * *
7038411 TCTCTATGTATCAG-ACATAGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATG
1 TCTCCATGTATCAGTA-ATGGAGCAGATCGAAGACGGCGAGCCTTATCTCCATGTATAGGCTAAG
* ** * * *
7038475 GAGCAGATTTTAGCCACTGGTCTTATCTCTCTAAAGTAGCAAGAGAGCAGGTTGAAAATACAAGT
65 G-G-GGAAATTA-CCAC-AGTCTTATCTCTCTAAGGTAGCAAGAGAGCAGATTGAAAATACAAGT
* * * *
7038540 CTTATCTTCTTGAGGTAGCAAAGAAGCAGACTGAAAATTACAAATCTTATCTTCATGTATCGGCT
126 CTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCT
* * * *
7038605 ATGGAGCAGATCAAAAATGGCGAGTCTTATCTCTATGTATCAGCTATGGAGCAGATTTTAGCCAT
191 ATGAAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCAC
* *
7038670 CAGTCTTATCTCTCTAAGGTAGCAAGAGAGTAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTA
256 CAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTA
** * * * * *
7038735 GCAA-GAGAGCAGGTTGAAGA-TACAAG-TCTTATCTTCCTGAGGTA-GCA--ATGAAACAGA-C
321 GCAAGGA-AGCAGACTAAAGATTACAAGATCTTATC-TCC--ATGTATCCACTATGGAGCAGATC
* *** *
7038793 TGAAAAT-TATAGATCATA
382 AG-AAATGGCGAGATCTTA
* * * *
7038811 TCTCCATGTATC-GTCTATGGAGCAGATCAGAA-ATGGCGAGCCTTATCTCCATGTATCGGCTAT
1 TCTCCATGTATCAGT-AATGGAGCAGATC-GAAGACGGCGAGCCTTATCTCCATGTATAGGCTAA
* * * * *
7038874 GGAGAAAATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCATATTGAAGATACAAG
64 GGGGGAAA--TTA-CCA-CAGTCTTATCTCTCTAAGGTAGCAAGAGAGCAGATTGAAAATACAAG
*
7038939 TCTTATCTTCCTGAGGTAGCAAGGAAGCAGACT-AAAGATTACAGATCATATCTCCATGTATCGG
125 TCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAA-ATTACAGATCTTATCTCCATGTATCGG
* *
7039003 CTATGAAGCAGATCGAAAATAGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC
189 CTATGAAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCC
* * *
7039068 ATCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTAAGG
254 ACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGG
*
7039133 TAGCAAGGAAGCAGACTAAATATTA-AAGATCTTATCTCCATGTATCCACTATGGAGCAGATC-G
319 TAGCAAGGAAGCAGACTAAAGATTACAAGATCTTATCTCCATGTATCCACTATGGAGCAGATCAG
* *
7039196 AAGACGGCGA-ACCTTA
384 AA-ATGGCGAGATCTTA
* * * *
7039212 TCTCCCT-AAGCAGTAATGGAACAGATCGAAGACGGCGAGCCTTA
1 TCTCCATGTATCAGTAATGGAGCAGATCGAAGACGGCGAGCCTTA
7039256 ACCCCCTAGA
Statistics
Matches: 1012, Mismatches: 158, Indels: 152
0.77 0.12 0.11
Matches are distributed among these distances:
391 4 0.00
392 2 0.00
393 8 0.01
394 93 0.09
395 46 0.05
396 5 0.00
397 5 0.00
398 6 0.01
399 10 0.01
400 362 0.36
401 165 0.16
402 2 0.00
403 4 0.00
406 150 0.15
407 6 0.01
410 5 0.00
411 5 0.00
412 47 0.05
413 70 0.07
414 11 0.01
416 3 0.00
418 3 0.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (399 bp):
TCTCCATGTATCAGTAATGGAGCAGATCGAAGACGGCGAGCCTTATCTCCATGTATAGGCTAAGG
GGGAAATTACCACAGTCTTATCTCTCTAAGGTAGCAAGAGAGCAGATTGAAAATACAAGTCTTAT
CTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGAA
GCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCC
TTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAG
GAAGCAGACTAAAGATTACAAGATCTTATCTCCATGTATCCACTATGGAGCAGATCAGAAATGGC
GAGATCTTA
Found at i:7039367 original size:88 final size:88
Alignment explanation
Indices: 7039208--7039416 Score: 260
Period size: 88 Copynumber: 2.4 Consensus size: 88
7039198 GACGGCGAAC
* * * * *
7039208 CTTATCTCCCTAAGCAGTAATGGAACAGATCGAAGACGGCGAGCCTTAACCCCCTAGATAGGAGG
1 CTTATCTCTCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGAGCCTTAACCCCCTAGACAGGAGG
* **
7039273 GTAACAGGCGGGAAATTACAAAT
66 GAAACAGGCGAAAAATTACAAAT
* * *
7039296 CTTATCTCTCTAAGCAGTAGTGGGGCAGATTGAAGACGGTGAGCCTTAACCCCCTA-AGCAGTAG
1 CTTATCTCTCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGAGCCTTAACCCCCTAGA-CAGGAG
* * *
7039360 GGAAACAGGCTAAAAATTGCAGAT
65 GGAAACAGGCGAAAAATTACAAAT
*
7039384 CTTATCTCT-TAAACAGTAGTGGAGCAGATTGAA
1 CTTATCTCTCTAAGCAGTAGTGGAGCAGATTGAA
7039417 ACGAGTTCCT
Statistics
Matches: 104, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
87 23 0.22
88 81 0.78
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.22
Consensus pattern (88 bp):
CTTATCTCTCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGAGCCTTAACCCCCTAGACAGGAGG
GAAACAGGCGAAAAATTACAAAT
Found at i:7041030 original size:10 final size:10
Alignment explanation
Indices: 7041017--7041050 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
7041007 TTTTTTTTAA
*
7041017 ATGTATTTAT
1 ATGTATATAT
7041027 ATGTATATAT
1 ATGTATATAT
7041037 ATGTATATAT
1 ATGTATATAT
7041047 ATGT
1 ATGT
7041051 CTTCTTTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (10 bp):
ATGTATATAT
Found at i:7041676 original size:120 final size:120
Alignment explanation
Indices: 7041463--7041686 Score: 270
Period size: 120 Copynumber: 1.9 Consensus size: 120
7041453 AAAGTTTTTC
* * ** *
7041463 AAAATAAGGCAATATTTCGTGTTTGGAAGTTCGAGAAATCGTGCCTTACCATGCTGGGTTTCGAT
1 AAAATAAGGCAATATTTCATGTTTGGAAATTCGAGAAATCGTGCCCAACCATGCTGGGTTTCAAT
* * ** * *
7041528 TTTCTGTTCAACTGAATAACTGAATATCCTTTTGAAATTCCATCCATGTTTTCTT
66 TTACCGTTCAACCAAATAACTAAATATCCTTTTAAAATTCCATCCATGTTTTCTT
* * * * *
7041583 AAAATGAGGCAATATTTCATGTTTGTAAATTTGAGAAATCGTGCCCAATCGTGCTGGGTTTCAAT
1 AAAATAAGGCAATATTTCATGTTTGGAAATTCGAGAAATCGTGCCCAACCATGCTGGGTTTCAAT
* *
7041648 TTACCGTTTAACCAAAT-ATTCAAATATCCTTTTAAAATT
66 TTACCGTTCAACCAAATAACT-AAATATCCTTTTAAAATT
7041687 TCAAATGCAT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
119 2 0.02
120 83 0.98
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.38
Consensus pattern (120 bp):
AAAATAAGGCAATATTTCATGTTTGGAAATTCGAGAAATCGTGCCCAACCATGCTGGGTTTCAAT
TTACCGTTCAACCAAATAACTAAATATCCTTTTAAAATTCCATCCATGTTTTCTT
Found at i:7043144 original size:22 final size:22
Alignment explanation
Indices: 7043093--7043951 Score: 1655
Period size: 22 Copynumber: 39.0 Consensus size: 22
7043083 TGTTATTGAT
* *
7043093 CAGTGGTAGCTTCGGCTACATTT
1 CAGTGGTAGCTTTGGCTACA-TC
7043116 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043138 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043160 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043182 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043204 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043226 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043248 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043270 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043292 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043314 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043336 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043358 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043380 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043402 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043424 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043446 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043468 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043490 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043512 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043534 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043556 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043578 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043600 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043622 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043644 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043666 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043688 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043710 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043732 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043754 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043776 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043798 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043820 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043842 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043864 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
7043886 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTTGGCTACATC
* *
7043908 CAGTGGTAGCTTCGGCTACATAT
1 CAGTGGTAGCTTTGGCTACAT-C
*
7043931 CAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTTGGCTACAT
7043952 ATCAGTGTGG
Statistics
Matches: 831, Mismatches: 4, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
22 791 0.95
23 40 0.05
ACGTcount: A:0.18, C:0.23, G:0.27, T:0.32
Consensus pattern (22 bp):
CAGTGGTAGCTTTGGCTACATC
Found at i:7046422 original size:3 final size:3
Alignment explanation
Indices: 7046414--7046444 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
7046404 GTTCTGAGTA
7046414 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7046445 TTTTAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7050783 original size:8 final size:8
Alignment explanation
Indices: 7050734--7050814 Score: 51
Period size: 8 Copynumber: 10.0 Consensus size: 8
7050724 TTAAATGATC
7050734 TTTTAAAA
1 TTTTAAAA
7050742 -TTTAAAA
1 TTTTAAAA
7050749 TATTTAAAA
1 T-TTTAAAA
**
7050758 AATTAAAA
1 TTTTAAAA
* *
7050766 ATTT--AT
1 TTTTAAAA
7050772 TTTTAAAA
1 TTTTAAAA
7050780 TTTTAAAA
1 TTTTAAAA
7050788 TTATTGAAAAA
1 TT-TT--AAAA
*
7050799 GTTTAAAA
1 TTTTAAAA
*
7050807 TTATAAAA
1 TTTTAAAA
7050815 AAATATTTGT
Statistics
Matches: 57, Mismatches: 9, Indels: 14
0.71 0.11 0.17
Matches are distributed among these distances:
6 4 0.07
7 7 0.12
8 30 0.53
9 9 0.16
10 2 0.04
11 5 0.09
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (8 bp):
TTTTAAAA
Found at i:7050816 original size:19 final size:19
Alignment explanation
Indices: 7050776--7050817 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
7050766 ATTTATTTTT
* **
7050776 AAAATTTTAAAATTATTGA
1 AAAAGTTTAAAATTATAAA
7050795 AAAAGTTTAAAATTATAAA
1 AAAAGTTTAAAATTATAAA
7050814 AAAA
1 AAAA
7050818 TATTTGTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (19 bp):
AAAAGTTTAAAATTATAAA
Found at i:7067317 original size:30 final size:30
Alignment explanation
Indices: 7067273--7067340 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 30
7067263 GATGATGAGA
* *
7067273 CGGGCCCATCAACAACGCCCACACAATTAC
1 CGGGCCCATCAACAACACCCACACAATCAC
* * *
7067303 CGGGCCTATTAACAATACCCACACAATCAC
1 CGGGCCCATCAACAACACCCACACAATCAC
7067333 CGGGCCCA
1 CGGGCCCA
7067341 ATGCCTCAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.32, C:0.41, G:0.15, T:0.12
Consensus pattern (30 bp):
CGGGCCCATCAACAACACCCACACAATCAC
Found at i:7067418 original size:18 final size:18
Alignment explanation
Indices: 7067395--7067431 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
7067385 GCCAAATGCT
*
7067395 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATG
7067413 TATCCTAACCCTTATATG
1 TATCCTAACCCTTATATG
7067431 T
1 T
7067432 TTTCTTTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.27, G:0.08, T:0.41
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:7070527 original size:35 final size:37
Alignment explanation
Indices: 7070488--7070563 Score: 111
Period size: 35 Copynumber: 2.1 Consensus size: 37
7070478 TTTTAAAAAA
*
7070488 CTAAACCCTAATTTAATTAATTT-TAACCCTA-AACC
1 CTAAACCCTAATTTAATTAATTTAGAACCCTAGAACC
* *
7070523 CTAAACCCTAATTTAATTTATTTAGAACCCTAGAATC
1 CTAAACCCTAATTTAATTAATTTAGAACCCTAGAACC
7070560 CTAA
1 CTAA
7070564 TTTAATTAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 22 0.61
36 7 0.19
37 7 0.19
ACGTcount: A:0.39, C:0.24, G:0.03, T:0.34
Consensus pattern (37 bp):
CTAAACCCTAATTTAATTAATTTAGAACCCTAGAACC
Found at i:7070595 original size:30 final size:30
Alignment explanation
Indices: 7070518--7070596 Score: 81
Period size: 30 Copynumber: 2.7 Consensus size: 30
7070508 TTTTAACCCT
* * *
7070518 AAACCCTA-AACCCTAATTTAATTTATTTA
1 AAACCCTAGAAACCTAATTTAATTAATCTA
* *
7070547 GAACCCTAGAATCCTAATTTAATTAATCTA
1 AAACCCTAGAAACCTAATTTAATTAATCTA
*
7070577 AAATCCTA-AAACCTTAATTT
1 AAACCCTAGAAACC-TAATTT
7070597 GAATAGTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
29 11 0.27
30 30 0.73
ACGTcount: A:0.42, C:0.20, G:0.03, T:0.35
Consensus pattern (30 bp):
AAACCCTAGAAACCTAATTTAATTAATCTA
Found at i:7071855 original size:2 final size:2
Alignment explanation
Indices: 7071848--7071872 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7071838 TAAACAATCT
7071848 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7071873 GAAAAAAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7074175 original size:3 final size:3
Alignment explanation
Indices: 7074167--7074198 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7074157 CAGTAATAGT
7074167 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
7074199 CTGTTTTATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:7080510 original size:25 final size:27
Alignment explanation
Indices: 7080452--7080510 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
7080442 TAACAAATGC
*
7080452 CTATTTTTAATTAATCTATTTTTCATA
1 CTATTTGTAATTAATCTATTTTTCATA
* *
7080479 TTTTTTGTAATTAAT-TATTTTT-ATA
1 CTATTTGTAATTAATCTATTTTTCATA
7080504 CTATTTG
1 CTATTTG
7080511 GATAAAAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 8 0.30
26 7 0.26
27 12 0.44
ACGTcount: A:0.27, C:0.07, G:0.03, T:0.63
Consensus pattern (27 bp):
CTATTTGTAATTAATCTATTTTTCATA
Found at i:7088159 original size:5 final size:5
Alignment explanation
Indices: 7088151--7088176 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7088141 AATATATATA
7088151 AAAAG AAAAG AAAAG AAAAG AAAAG A
1 AAAAG AAAAG AAAAG AAAAG AAAAG A
7088177 TGGACATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:7088650 original size:17 final size:17
Alignment explanation
Indices: 7088630--7088685 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
7088620 AATAAATGGT
7088630 TTGTATGTTTAAATCGA
1 TTGTATGTTTAAATCGA
*
7088647 TTGTCATATTGTATAAT--A
1 TTGT-ATGTT-TA-AATCGA
*
7088665 TTGCATGTTTAAATCGA
1 TTGTATGTTTAAATCGA
7088682 TTGT
1 TTGT
7088686 CATATTGTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
15 3 0.10
16 2 0.07
17 12 0.40
18 8 0.27
19 2 0.07
20 3 0.10
ACGTcount: A:0.29, C:0.07, G:0.16, T:0.48
Consensus pattern (17 bp):
TTGTATGTTTAAATCGA
Found at i:7088680 original size:35 final size:35
Alignment explanation
Indices: 7088634--7088721 Score: 140
Period size: 35 Copynumber: 2.5 Consensus size: 35
7088624 AATGGTTTGT
7088634 ATGTTTAAATCGATTGTCATATTGTATAATATTGC
1 ATGTTTAAATCGATTGTCATATTGTATAATATTGC
7088669 ATGTTTAAATCGATTGTCATATTGTATAATATTGC
1 ATGTTTAAATCGATTGTCATATTGTATAATATTGC
* * *
7088704 TTCTTTTGAATCGATTGT
1 AT-GTTTAAATCGATTGT
7088722 TTTTATGTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
35 36 0.73
36 13 0.27
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.48
Consensus pattern (35 bp):
ATGTTTAAATCGATTGTCATATTGTATAATATTGC
Found at i:7088736 original size:21 final size:21
Alignment explanation
Indices: 7088712--7088804 Score: 63
Period size: 21 Copynumber: 4.5 Consensus size: 21
7088702 GCTTCTTTTG
7088712 AATCGATTGTTTTTATGTTTA
1 AATCGATTGTTTTTATGTTTA
* *
7088733 AATCAATTG---TTATGTTGA
1 AATCGATTGTTTTTATGTTTA
*
7088751 AAT--ATTGCCTCTTCTTAT-TTTG
1 AATCGATTG--T-TT-TTATGTTTA
*
7088773 AATCGATTGTTTATATGTTTA
1 AATCGATTGTTTTTATGTTTA
*
7088794 AACCGATTGTT
1 AATCGATTGTT
7088805 ATGTTGGAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 20
0.67 0.09 0.24
Matches are distributed among these distances:
16 4 0.07
18 11 0.20
20 3 0.05
21 23 0.42
22 6 0.11
23 4 0.07
24 4 0.07
ACGTcount: A:0.26, C:0.10, G:0.14, T:0.51
Consensus pattern (21 bp):
AATCGATTGTTTTTATGTTTA
Found at i:7088828 original size:55 final size:56
Alignment explanation
Indices: 7088702--7088850 Score: 183
Period size: 61 Copynumber: 2.6 Consensus size: 56
7088692 GTATAATATT
* *
7088702 GCTTCTTTTGAATCGATTGTTTTTATGTTTAAATCAATTGTTATGTTGAAATATTGCC
1 GCTTCTTTTGAATCGATTGTTTATATGTTTAAACCAATTGTTATGTTGAAATA-T-CC
* * *
7088760 TCTTCTTATTTTGAATCGATTGTTTATATGTTTAAACCGATTGTTATGTTGGAATA-CC
1 GCTTC---TTTTGAATCGATTGTTTATATGTTTAAACCAATTGTTATGTTGAAATATCC
* *
7088818 GCTTCTTTTGAATTGATTGTTTATATATTTAAA
1 GCTTCTTTTGAATCGATTGTTTATATGTTTAAA
7088851 TCGAATATTA
Statistics
Matches: 80, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
55 26 0.32
58 10 0.12
61 44 0.55
ACGTcount: A:0.25, C:0.10, G:0.15, T:0.50
Consensus pattern (56 bp):
GCTTCTTTTGAATCGATTGTTTATATGTTTAAACCAATTGTTATGTTGAAATATCC
Found at i:7089666 original size:14 final size:14
Alignment explanation
Indices: 7089647--7089674 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7089637 ATTTAATTCT
7089647 GTATAACAATTTCA
1 GTATAACAATTTCA
7089661 GTATAACAATTTCA
1 GTATAACAATTTCA
7089675 TTTAATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (14 bp):
GTATAACAATTTCA
Found at i:7091250 original size:11 final size:11
Alignment explanation
Indices: 7091236--7091276 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
7091226 TGTTTTCTCC
7091236 CTATTTTGCTA
1 CTATTTTGCTA
*
7091247 CTATTTTACTA
1 CTATTTTGCTA
* *
7091258 TTATGTTGCTA
1 CTATTTTGCTA
7091269 CTATTTTG
1 CTATTTTG
7091277 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:7093624 original size:35 final size:35
Alignment explanation
Indices: 7093562--7093698 Score: 118
Period size: 35 Copynumber: 3.9 Consensus size: 35
7093552 CACATATGGT
* * * * *
7093562 CGAATATGCATATTTAAGATAACTTCACATATATC
1 CGAATATACAAATTCAATATAACTTCACATGTATC
* * *
7093597 CGAGTATACAATTTCAATATAAGTTCACATGTAAT-
1 CGAATATACAAATTCAATATAACTTCACATGT-ATC
* * *
7093632 CGAATACTA-AAATTCAATATAACCTCACATGCACC
1 CGAATA-TACAAATTCAATATAACTTCACATGTATC
*
7093667 CGAATATACAAGTTCAATATAAGCTT-ACATGT
1 CGAATATACAAATTCAATATAA-CTTCACATGT
7093699 GCTTACCTAT
Statistics
Matches: 80, Mismatches: 17, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
34 3 0.04
35 71 0.89
36 6 0.08
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (35 bp):
CGAATATACAAATTCAATATAACTTCACATGTATC
Found at i:7098907 original size:47 final size:47
Alignment explanation
Indices: 7098856--7098947 Score: 159
Period size: 47 Copynumber: 2.0 Consensus size: 47
7098846 CAACTTCCAG
7098856 AATGCCATTTACCACAATGCTTACACTCGAGTTTGTTCTT-CCGATAA
1 AATGCCATTTACCACAATGCTTACACTCGAGTTTGTT-TTGCCGATAA
*
7098903 AATGCCATTTACCACAATGCTTACACTGGAGTTTGTTTTGCCGAT
1 AATGCCATTTACCACAATGCTTACACTCGAGTTTGTTTTGCCGAT
7098948 CATTGCCAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
46 2 0.05
47 41 0.95
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (47 bp):
AATGCCATTTACCACAATGCTTACACTCGAGTTTGTTTTGCCGATAA
Found at i:7101366 original size:35 final size:35
Alignment explanation
Indices: 7101304--7101440 Score: 118
Period size: 35 Copynumber: 3.9 Consensus size: 35
7101294 CACATATGGT
* * * * *
7101304 CGAATATGCATATTTAAGATAACTTCACATATATC
1 CGAATATACAAATTCAATATAACTTCACATGTATC
* * *
7101339 CGAGTATACAATTTCAATATAAGTTCACATGTAAT-
1 CGAATATACAAATTCAATATAACTTCACATGT-ATC
* * *
7101374 CGAATACTA-AAATTCAATATAACCTCACATGCACC
1 CGAATA-TACAAATTCAATATAACTTCACATGTATC
*
7101409 CGAATATACAAGTTCAATATAAGCTT-ACATGT
1 CGAATATACAAATTCAATATAA-CTTCACATGT
7101441 GCTTACCTAT
Statistics
Matches: 80, Mismatches: 17, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
34 3 0.04
35 71 0.89
36 6 0.08
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (35 bp):
CGAATATACAAATTCAATATAACTTCACATGTATC
Found at i:7102221 original size:30 final size:31
Alignment explanation
Indices: 7102197--7102255 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
7102187 GTAAATACTC
* *
7102197 AAAATTTGAGGGATTAA-AGTGTAAATATGA
1 AAAATTTGAAGGACTAATAGTGTAAATATGA
*
7102227 AAAATTTGAAGGACTAATAGTGCAAATAT
1 AAAATTTGAAGGACTAATAGTGTAAATAT
7102256 CTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.47, C:0.03, G:0.20, T:0.29
Consensus pattern (31 bp):
AAAATTTGAAGGACTAATAGTGTAAATATGA
Found at i:7102520 original size:8 final size:8
Alignment explanation
Indices: 7102509--7102533 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7102499 TTTAATAAGA
7102509 TATTTTAT
1 TATTTTAT
7102517 TATTTTAT
1 TATTTTAT
7102525 TATTTTAT
1 TATTTTAT
7102533 T
1 T
7102534 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:7104005 original size:12 final size:12
Alignment explanation
Indices: 7103988--7104067 Score: 61
Period size: 12 Copynumber: 7.2 Consensus size: 12
7103978 TATATATTGC
7103988 TATTATTTATAT
1 TATTATTTATAT
7104000 TATTA-TTACTAT
1 TATTATTTA-TAT
7104012 TATTA--T-TAT
1 TATTATTTATAT
7104021 TA-T-TTTATAT
1 TATTATTTATAT
*
7104031 TATTA-TTATGT
1 TATTATTTATAT
7104042 TA-TATTTAGTAT
1 TATTATTTA-TAT
7104054 TATT-TTTAATAT
1 TATTATTT-ATAT
7104066 TA
1 TA
7104068 CATTTTTTAC
Statistics
Matches: 56, Mismatches: 2, Indels: 20
0.72 0.03 0.26
Matches are distributed among these distances:
8 1 0.02
9 6 0.11
10 7 0.12
11 15 0.27
12 25 0.45
13 2 0.04
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.64
Consensus pattern (12 bp):
TATTATTTATAT
Found at i:7104057 original size:3 final size:3
Alignment explanation
Indices: 7103974--7104039 Score: 66
Period size: 3 Copynumber: 22.3 Consensus size: 3
7103964 GATTAAGTTT
* * *
7103974 TTA TTA TATA TTG CTA TTA TT- TATA TTA TTA TTA CTA TTA TTA TTA
1 TTA TTA T-TA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA
7104020 TTA TT- TTA -TA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA T
7104040 GTTATATTTA
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
2 5 0.10
3 43 0.83
4 4 0.08
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:7104616 original size:24 final size:25
Alignment explanation
Indices: 7104569--7104625 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
7104559 TATGTATATA
*
7104569 ATATAAATTCTTAATACCATATTAT
1 ATATAAATTCTTAATACCACATTAT
* * *
7104594 GTATATATT-TTAATACTACATTAT
1 ATATAAATTCTTAATACCACATTAT
7104618 ATATAAAT
1 ATATAAAT
7104626 GTATTTTTAT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 19 0.73
25 7 0.27
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.46
Consensus pattern (25 bp):
ATATAAATTCTTAATACCACATTAT
Found at i:7104833 original size:20 final size:23
Alignment explanation
Indices: 7104782--7104876 Score: 70
Period size: 22 Copynumber: 4.0 Consensus size: 23
7104772 ATCGTATACG
7104782 TTTTATATATATTATGTATATAT
1 TTTTATATATATTATGTATATAT
*
7104805 TTTCA-ATATTATTA-GT-TATAT
1 TTTTATATA-TATTATGTATATAT
*
7104826 TTTTATATACTATTCCATGTACATAT
1 TTTTATATA-TATT--ATGTATATAT
** * *
7104852 TTCCAGATCATCTTATGTATATAT
1 TTTTATAT-ATATTATGTATATAT
7104876 T
1 T
7104877 CTTAAACACT
Statistics
Matches: 56, Mismatches: 9, Indels: 13
0.72 0.12 0.17
Matches are distributed among these distances:
21 9 0.16
22 12 0.21
23 9 0.16
24 11 0.20
25 2 0.04
26 12 0.21
27 1 0.02
ACGTcount: A:0.32, C:0.09, G:0.05, T:0.54
Consensus pattern (23 bp):
TTTTATATATATTATGTATATAT
Found at i:7105221 original size:20 final size:20
Alignment explanation
Indices: 7105167--7105227 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
7105157 TATATATGTA
*
7105167 TATATTATGTATATATTTTAAC
1 TATATTAGGTATAT-TTTT-AC
* *
7105189 -ATTACTAGTTATATTTTTAC
1 TA-TATTAGGTATATTTTTAC
*
7105209 TATATTAGGTATATCTTTA
1 TATATTAGGTATATTTTTA
7105228 TCGTTTTTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
20 16 0.52
21 6 0.19
22 9 0.29
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.54
Consensus pattern (20 bp):
TATATTAGGTATATTTTTAC
Found at i:7108708 original size:51 final size:51
Alignment explanation
Indices: 7108648--7108783 Score: 209
Period size: 51 Copynumber: 2.7 Consensus size: 51
7108638 GACTAACACA
*
7108648 ATGGATGCCATGGAGCCTCACTCACATGGTCTTACACCTCATATCATATTT
1 ATGGATGCCATGGAGCCTCACTCACATGGTCTTACACCTCATATCATATCT
* * * *
7108699 ATGGATGCCATGAAACCTCACTCAGATGGTCTCACACCTCATATCATATCT
1 ATGGATGCCATGGAGCCTCACTCACATGGTCTTACACCTCATATCATATCT
**
7108750 ATGGATATCATGGAGCCTCACTCACATGGTCTTA
1 ATGGATGCCATGGAGCCTCACTCACATGGTCTTA
7108784 TATTGTCTCA
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 74 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (51 bp):
ATGGATGCCATGGAGCCTCACTCACATGGTCTTACACCTCATATCATATCT
Found at i:7110299 original size:38 final size:38
Alignment explanation
Indices: 7110248--7110328 Score: 162
Period size: 38 Copynumber: 2.1 Consensus size: 38
7110238 CCCCTTTCAT
7110248 TCATACCCTATTGTTCTTACACCTTTCATCATCCTCAC
1 TCATACCCTATTGTTCTTACACCTTTCATCATCCTCAC
7110286 TCATACCCTATTGTTCTTACACCTTTCATCATCCTCAC
1 TCATACCCTATTGTTCTTACACCTTTCATCATCCTCAC
7110324 TCATA
1 TCATA
7110329 AACAATCATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.22, C:0.36, G:0.02, T:0.40
Consensus pattern (38 bp):
TCATACCCTATTGTTCTTACACCTTTCATCATCCTCAC
Found at i:7119944 original size:41 final size:41
Alignment explanation
Indices: 7119881--7119962 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
7119871 TATATTTGAC
7119881 TTTGAAAGATTTGAAAAGAAAGAGTATCAGTTCAGAGATAA
1 TTTGAAAGATTTGAAAAGAAAGAGTATCAGTTCAGAGATAA
*
7119922 TTTGAAAGATTTGATAAA-AAAGAGTATCGGTTCAGAGATAA
1 TTTGAAAGATTTGA-AAAGAAAGAGTATCAGTTCAGAGATAA
7119963 ATCTCTAATC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
41 36 0.92
42 3 0.08
ACGTcount: A:0.45, C:0.05, G:0.22, T:0.28
Consensus pattern (41 bp):
TTTGAAAGATTTGAAAAGAAAGAGTATCAGTTCAGAGATAA
Found at i:7124849 original size:25 final size:23
Alignment explanation
Indices: 7124817--7124895 Score: 61
Period size: 25 Copynumber: 3.2 Consensus size: 23
7124807 ACTTATTAAA
7124817 TATTTAAATAAACTATATAATATT
1 TATTTAAATAAA-TATATAATATT
7124841 TATTATAAATGATTAATAT-TAATATT
1 TATT-TAAAT-A--AATATATAATATT
* * *
7124867 AATTTAAACTAAATTACATAGTATT
1 TATTTAAA-TAAA-TATATAATATT
7124892 TATT
1 TATT
7124896 ATTAATTATT
Statistics
Matches: 44, Mismatches: 4, Indels: 13
0.72 0.07 0.21
Matches are distributed among these distances:
23 2 0.05
24 6 0.14
25 19 0.43
26 12 0.27
27 3 0.07
28 2 0.05
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.47
Consensus pattern (23 bp):
TATTTAAATAAATATATAATATT
Done.