Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 24 of 167
Found at i:7127250 original size:10 final size:10
Alignment explanation
Indices: 7127232--7127261 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
7127222 TTCTTTGAAA
7127232 GTACATTTTT
1 GTACATTTTT
*
7127242 GTTCATTTTT
1 GTACATTTTT
7127252 GTACATTTTT
1 GTACATTTTT
7127262 TTTTAATTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.17, C:0.10, G:0.10, T:0.63
Consensus pattern (10 bp):
GTACATTTTT
Found at i:7133261 original size:3 final size:3
Alignment explanation
Indices: 7133253--7133665 Score: 178
Period size: 3 Copynumber: 134.0 Consensus size: 3
7133243 TAAAAATGAC
* * * *
7133253 AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AAA AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* ** * * * *
7133301 AAT GAT GGT AAA AAT AAT AGT AAT AAT AAT -AT ACT AAAT AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
* * * * **
7133346 AAT AAC AA- AAC AAT AGT AAT AGT AATT ACC AA- AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT
* * * *
7133390 AAT AAT AAT AGT AAT AAT AAT AAG ACCAT AAT AAT AAT AAA AAGA AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A--AT AAT AAT AAT AAT AA-T AAT
* * *
7133438 AAT AGCAT -GT AAAT AAT AAT AAT AAT AAT AGT AAT AAT AAT AAG ACCAT
1 AAT A--AT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A--AT
* * *
7133487 AAT AAT AAT AAA AAGA AAT AAT AGCAT -GT AAAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AA-T AAT AAT A--AT AAT -AAT AAT AAT AAT AAT AAT
* * * * * * *
7133535 AGT ATAT ATT AAT AAT GAC AAT AAT -AG AAT -AT AAT AAA AAC AA-
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * * *
7133578 ATAT ACT ATGT CAAT AAG GAT AAT AGT AGT AAT AGT AAT AAA AAC AAT
1 A-AT AAT A-AT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
7133626 AAT AAT AA- ATAT AAT AAT AGAA AAT AAT AAT AAA AAT AAT
1 AAT AAT AAT A-AT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
7133666 TAATTTGAAA
Statistics
Matches: 308, Mismatches: 73, Indels: 58
0.70 0.17 0.13
Matches are distributed among these distances:
2 13 0.04
3 266 0.86
4 20 0.06
5 9 0.03
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:7133453 original size:68 final size:68
Alignment explanation
Indices: 7133381--7133560 Score: 324
Period size: 68 Copynumber: 2.6 Consensus size: 68
7133371 TTACCAAAAT
7133381 AATAATAATAATAATAATAGTAATAATAATAAGACCATAATAATAATAAAAAGAAATAATAGCAT
1 AATAATAATAATAATAATAGTAATAATAATAAGACCATAATAATAATAAAAAGAAATAATAGCAT
7133446 GTA
66 GTA
7133449 AATAATAATAATAATAATAGTAATAATAATAAGACCATAATAATAATAAAAAGAAATAATAGCAT
1 AATAATAATAATAATAATAGTAATAATAATAAGACCATAATAATAATAAAAAGAAATAATAGCAT
7133514 GTA
66 GTA
* *
7133517 AATAATAATAATAATAATAGTATATATTAATAATGACAATAATA
1 AATAATAATAATAATAATAGTA-ATAATAATAA-GACCATAATA
7133561 GAATATAATA
Statistics
Matches: 108, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
68 90 0.83
69 9 0.08
70 9 0.08
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.28
Consensus pattern (68 bp):
AATAATAATAATAATAATAGTAATAATAATAAGACCATAATAATAATAAAAAGAAATAATAGCAT
GTA
Found at i:7133569 original size:22 final size:24
Alignment explanation
Indices: 7133518--7133654 Score: 79
Period size: 25 Copynumber: 5.8 Consensus size: 24
7133508 TAGCATGTAA
*
7133518 ATAATAATAATAATAATAGTATAT
1 ATAATAATAACAATAATAGTATAT
*
7133542 ATTAATAATGACAATAATAG-A-AT
1 A-TAATAATAACAATAATAGTATAT
*
7133565 ATAATAAAAAC-A-AATA-TACTAT
1 ATAATAATAACAATAATAGTA-TAT
* ** * *
7133587 GTCAATAAGGATAATAGTAGTA-AT
1 AT-AATAATAACAATAATAGTATAT
* * *
7133611 AGTAATAAAAACAATAATAATAAAT
1 A-TAATAATAACAATAATAGTATAT
*
7133636 ATAATAATAGAAAATAATA
1 ATAATAATA-ACAATAATA
7133655 ATAAAAATAA
Statistics
Matches: 85, Mismatches: 17, Indels: 21
0.69 0.14 0.17
Matches are distributed among these distances:
20 5 0.06
21 1 0.01
22 11 0.13
23 9 0.11
24 26 0.31
25 31 0.36
26 2 0.02
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.29
Consensus pattern (24 bp):
ATAATAATAACAATAATAGTATAT
Found at i:7133651 original size:25 final size:27
Alignment explanation
Indices: 7133623--7133693 Score: 85
Period size: 25 Copynumber: 2.7 Consensus size: 27
7133613 TAATAAAAAC
*
7133623 AATAATAATAAATATAA-TAA-TAGAA
1 AATAATAATAAAAATAATTAATTAGAA
*
7133648 AATAATAATAAAAATAATTAATTTGAA
1 AATAATAATAAAAATAATTAATTAGAA
7133675 AATAA-AATAGTAAAATAAT
1 AATAATAATA--AAAATAAT
7133694 GAAAAAAGAC
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
25 16 0.40
26 7 0.17
27 9 0.22
28 8 0.20
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (27 bp):
AATAATAATAAAAATAATTAATTAGAA
Found at i:7133654 original size:13 final size:13
Alignment explanation
Indices: 7133623--7133693 Score: 76
Period size: 13 Copynumber: 5.5 Consensus size: 13
7133613 TAATAAAAAC
7133623 AATAATAATA-AA
1 AATAATAATAGAA
*
7133635 TATAATAATAGAA
1 AATAATAATAGAA
7133648 AATAATAATA-AA
1 AATAATAATAGAA
*
7133660 AATAATTAATTTGAA
1 AATAA-TAA-TAGAA
7133675 AATAA-AATAGTAA
1 AATAATAATAG-AA
7133688 AATAAT
1 AATAAT
7133694 GAAAAAAGAC
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
12 18 0.37
13 23 0.47
14 1 0.02
15 7 0.14
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (13 bp):
AATAATAATAGAA
Found at i:7150804 original size:13 final size:13
Alignment explanation
Indices: 7150786--7150812 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7150776 GAAATAATCG
7150786 CACACGGGCGTGT
1 CACACGGGCGTGT
7150799 CACACGGGCGTGT
1 CACACGGGCGTGT
7150812 C
1 C
7150813 CCTGCCAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:7156453 original size:16 final size:17
Alignment explanation
Indices: 7156428--7156460 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7156418 CCGAAAAGTT
7156428 TATTTATTTT-GAAAGA
1 TATTTATTTTAGAAAGA
*
7156444 TATTTTTTTTAGAAAGA
1 TATTTATTTTAGAAAGA
7156461 AATCATACTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (17 bp):
TATTTATTTTAGAAAGA
Found at i:7156909 original size:14 final size:16
Alignment explanation
Indices: 7156883--7156921 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
7156873 AACTAAAAAT
7156883 ATAAAATATGACAA-A
1 ATAAAATATGACAATA
7156898 ATAAAA-ATGACAATA
1 ATAAAATATGACAATA
7156913 ATAATAATA
1 ATAA-AATA
7156922 ATAATAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 7 0.33
15 11 0.52
16 2 0.10
17 1 0.05
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.23
Consensus pattern (16 bp):
ATAAAATATGACAATA
Found at i:7156917 original size:3 final size:3
Alignment explanation
Indices: 7156909--7157199 Score: 120
Period size: 3 Copynumber: 97.0 Consensus size: 3
7156899 TAAAAATGAC
* * * * * * *
7156909 AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AGT AGT AGT AGT AGT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * ** * *
7156957 AGT AA- AA- AAT AAT AAT GAT GGT AAT AAT AAT AGT AAT AAT AAT AAG
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
7157003 ACCAT AAT AA- AAA AAT GA- AAT AAT AGCAT -GT AAAT AAT AAT AAT
1 A--AT AAT AAT AAT AAT AAT AAT AAT A--AT AAT -AAT AAT AAT AAT
* * *
7157047 AAC AAT AAT AAT -AT ATT AAT AAT AAT AAT AGT -AT ATAT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT -AAT AAT
* * * * * ** *
7157092 GAC AAT AAT AGAA AAT AAT AAA AAT AA- ATAT ACT -AT GTTT AAT AGT
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT A-AT AAT AAT -AAT AAT AAT
* *
7157138 AGT AAT AGT AAT AA- AAT AAT AAT AAT AAT GAAT -AT AAT AAT GAA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT -AAT
*
7157182 AAT AAT AAT AAA AAT AAT
1 AAT AAT AAT AAT AAT AAT
7157200 TAATTTGAAA
Statistics
Matches: 225, Mismatches: 40, Indels: 46
0.72 0.13 0.15
Matches are distributed among these distances:
2 19 0.08
3 187 0.83
4 14 0.06
5 5 0.02
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:7157066 original size:20 final size:20
Alignment explanation
Indices: 7157035--7157082 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
7157025 ATAGCATGTA
7157035 AATAATA-A-TAATAACAAT
1 AATAATATATTAATAACAAT
*
7157053 AATAATATATTAATAATAAT
1 AATAATATATTAATAACAAT
*
7157073 AATAGTATAT
1 AATAATATAT
7157083 ATAAATAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 7 0.27
19 1 0.04
20 18 0.69
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (20 bp):
AATAATATATTAATAACAAT
Found at i:7157499 original size:14 final size:14
Alignment explanation
Indices: 7157480--7157508 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7157470 TAAATAGCCC
7157480 CTTTATCGAAAACA
1 CTTTATCGAAAACA
7157494 CTTTATCGAAAACA
1 CTTTATCGAAAACA
7157508 C
1 C
7157509 GCGAATCCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (14 bp):
CTTTATCGAAAACA
Found at i:7158550 original size:20 final size:20
Alignment explanation
Indices: 7158503--7158567 Score: 69
Period size: 20 Copynumber: 3.1 Consensus size: 20
7158493 TTTTATATTT
7158503 TTTTTAAAAATATAAGTTTTAGAA
1 TTTTTAAAAAT-T-A-TTTTA-AA
*
7158527 TTTTTATAAA-TATTTTAAA
1 TTTTTAAAAATTATTTTAAA
*
7158546 TTTTTAAAAATTATTTTGAA
1 TTTTTAAAAATTATTTTAAA
7158566 TT
1 TT
7158568 ATTTTGTCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
19 11 0.30
20 15 0.41
21 1 0.03
22 1 0.03
24 9 0.24
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.54
Consensus pattern (20 bp):
TTTTTAAAAATTATTTTAAA
Found at i:7168248 original size:3 final size:3
Alignment explanation
Indices: 7168240--7168413 Score: 95
Period size: 3 Copynumber: 57.7 Consensus size: 3
7168230 AATGAAAATG
* * * * * *
7168240 ATA ATA ATA ATA ATA GTA ATA ATA AGA ATA TTA ATA TTA GTA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
7168288 ATA ATG ATA ATA GTA ATA GAAA ATA ACA ATA A-A ATA GT- ATA GTA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
7168332 ATA GTA ATA A-A AGTA AAA ATA ATA GTA CTA ATA ATG GTA ATA ATAA
1 ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
* *
7168378 ATA GTA ATA ATA ACA ATA ATA CA-A ATA ATAA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA AT-A ATA AT
7168414 CTAAAGTTTG
Statistics
Matches: 125, Mismatches: 37, Indels: 18
0.69 0.21 0.10
Matches are distributed among these distances:
2 6 0.05
3 108 0.86
4 11 0.09
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:7168602 original size:20 final size:20
Alignment explanation
Indices: 7168574--7168615 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7168564 AAAGAAAAAA
* *
7168574 AATATAATAATAATAGTAAT
1 AATACAATAATAATAATAAT
*
7168594 AATACAATAGTAATAATAAT
1 AATACAATAATAATAATAAT
7168614 AA
1 AA
7168616 AAAGGGAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (20 bp):
AATACAATAATAATAATAAT
Found at i:7168604 original size:14 final size:13
Alignment explanation
Indices: 7168573--7168612 Score: 57
Period size: 14 Copynumber: 3.2 Consensus size: 13
7168563 AAAAGAAAAA
7168573 AAATA-TAATAAT
1 AAATAGTAATAAT
7168585 -AATAGTAATAAT
1 AAATAGTAATAAT
7168597 ACAATAGTAATAAT
1 A-AATAGTAATAAT
7168611 AA
1 AA
7168613 TAAAAAGGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 4 0.16
12 7 0.28
13 1 0.04
14 13 0.52
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (13 bp):
AAATAGTAATAAT
Found at i:7168724 original size:3 final size:3
Alignment explanation
Indices: 7168577--7168708 Score: 65
Period size: 3 Copynumber: 44.3 Consensus size: 3
7168567 GAAAAAAAAT
* * * * *
7168577 ATA ATA ATA ATA GTA ATA AT- ACA ATA GTA ATA ATA ATA AAA AGGGA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA
* * * * *
7168623 ATA ATA AT- ATA TTA GATA GTA AAA ATA ATA ATA ATA ATA ACA GTA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
7168668 ATA A-A A-A ATG ATA ATA GTG ATA TTA GTA GTA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7168709 CAATGTATTA
Statistics
Matches: 95, Mismatches: 28, Indels: 12
0.70 0.21 0.09
Matches are distributed among these distances:
2 7 0.07
3 84 0.88
4 2 0.02
5 2 0.02
ACGTcount: A:0.59, C:0.02, G:0.10, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:7172036 original size:58 final size:60
Alignment explanation
Indices: 7171926--7172054 Score: 174
Period size: 58 Copynumber: 2.1 Consensus size: 60
7171916 ATGCATTGAT
* * *
7171926 TTTTTAATATATTTGTACAAACTATTTTTATATTGTTTCATTTAATAAAAA-AAAAGTTG
1 TTTTGAATATATTTGTACAAACTATTTTTATATTGTTTCATTTAATAAAAATAGAAGTTC
*
7171985 TTTTGAATAT-TTTGTACAAATTATTTTTATATT-TTGTCCTATTTAATAAAAATAGAAGTTC
1 TTTTGAATATATTTGTACAAACTATTTTTATATTGTT-T-C-ATTTAATAAAAATAGAAGTTC
7172046 TTTTGAATA
1 TTTTGAATA
7172055 AGACAATACA
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
57 2 0.03
58 23 0.37
59 10 0.16
60 12 0.19
61 15 0.24
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.50
Consensus pattern (60 bp):
TTTTGAATATATTTGTACAAACTATTTTTATATTGTTTCATTTAATAAAAATAGAAGTTC
Found at i:7173708 original size:49 final size:47
Alignment explanation
Indices: 7173548--7173767 Score: 220
Period size: 50 Copynumber: 4.6 Consensus size: 47
7173538 TGTATGTGCT
*
7173548 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATG-T-GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCT-CGATATGATAGTC
* * * *
7173592 AGTATAAGACCATGTCTAGGACATGGCATCGGCACGAATAT-ATGAGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTCG-ATATGAT-AG-TC
*
7173641 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTTGATAGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCGA-TATGATAGTC
* * * *
7173691 AGTGTAAGACCATGTCTGAGG-CATGGCATCGACTTGAT-GGATGAGCC
1 AGTGTAAGACCATGTCTG-GGACATGGCATCGGCTCGATATGAT-AGTC
7173738 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
7173768 AGTATTATAC
Statistics
Matches: 148, Mismatches: 14, Indels: 25
0.79 0.07 0.13
Matches are distributed among these distances:
44 8 0.05
45 15 0.10
46 17 0.11
47 31 0.21
48 5 0.03
49 29 0.20
50 34 0.23
51 7 0.05
52 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGATATGATAGTC
Found at i:7173758 original size:96 final size:95
Alignment explanation
Indices: 7173548--7173767 Score: 263
Period size: 96 Copynumber: 2.3 Consensus size: 95
7173538 TGTATGTGCT
7173548 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGTGTCAGTATAAGACCATGTCTAG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATGTGTCAGTATAAGACCATGTCTAG
* * *
7173611 GACATGGCATCGGCACGAATATATGAGAGCT
66 GACATGGCATCGACACGAATAGAT-AGAGCC
** *
7173642 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGATTTTGATAGTCAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTACGA-GATG-T-GTCAGTATAAGACCATGT
** *
7173706 CTGAGG-CATGGCATCGACTTG-ATGGAT-GAGCC
62 CT-AGGACATGGCATCGACACGAATAGATAGAGCC
7173738 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
7173768 AGTATTATAC
Statistics
Matches: 110, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
94 9 0.08
95 14 0.13
96 44 0.40
97 4 0.04
98 5 0.05
99 31 0.28
100 3 0.03
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATGTGTCAGTATAAGACCATGTCTAG
GACATGGCATCGACACGAATAGATAGAGCC
Found at i:7177064 original size:10 final size:10
Alignment explanation
Indices: 7177032--7177090 Score: 75
Period size: 10 Copynumber: 5.9 Consensus size: 10
7177022 TTAAATTCTA
7177032 AAAGATAAAT
1 AAAGATAAAT
*
7177042 ACAA-ATTAAT
1 A-AAGATAAAT
*
7177052 AAAGATAATT
1 AAAGATAAAT
7177062 AAAGATAAAT
1 AAAGATAAAT
*
7177072 AAGGATAAAT
1 AAAGATAAAT
7177082 AAAGATAAA
1 AAAGATAAA
7177091 AGCTAAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
9 2 0.05
10 37 0.90
11 2 0.05
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:7178273 original size:25 final size:23
Alignment explanation
Indices: 7178221--7178274 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 23
7178211 TATAAATAGT
7178221 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
7178244 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
7178269 AATAGT
1 AATAGT
7178275 AAAAATATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 11 0.44
24 2 0.08
25 12 0.48
ACGTcount: A:0.44, C:0.04, G:0.15, T:0.37
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:7178391 original size:22 final size:24
Alignment explanation
Indices: 7178333--7178400 Score: 77
Period size: 22 Copynumber: 2.9 Consensus size: 24
7178323 TAGATATAAA
* *
7178333 AAAAATATGTACATAATATAGTGT
1 AAAAATATATACATAATATAATGT
*
7178357 AAGAAATACATACATAATATAAT-T
1 AA-AAATATATACATAATATAATGT
*
7178381 -AAAATATATACATAAGATAA
1 AAAAATATATACATAATATAA
7178401 CATGCAGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
22 17 0.45
23 1 0.03
24 3 0.08
25 17 0.45
ACGTcount: A:0.57, C:0.06, G:0.07, T:0.29
Consensus pattern (24 bp):
AAAAATATATACATAATATAATGT
Found at i:7178443 original size:25 final size:25
Alignment explanation
Indices: 7178415--7178546 Score: 91
Period size: 25 Copynumber: 5.6 Consensus size: 25
7178405 CAGAAAAAAA
*
7178415 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATTAAAG
* * *
7178440 ATATATACATAAAATAGTA-CAATAT
1 ATATATACATAATATAGTATTAA-AG
* * *
7178465 ATATATACGTAATATAGAATT-TAG
1 ATATATACATAATATAGTATTAAAG
* *
7178489 A-ATATACCTAATATA-T-TAAAAG
1 ATATATACATAATATAGTATTAAAG
* *
7178511 A-ATATATATAATATAATATTAAA-
1 ATATATACATAATATAGTATTAAAG
*
7178534 AAATATA-ATAATA
1 ATATATACATAATA
7178547 ACAAAAAAAA
Statistics
Matches: 84, Mismatches: 17, Indels: 14
0.73 0.15 0.12
Matches are distributed among these distances:
21 1 0.01
22 15 0.18
23 21 0.25
24 13 0.15
25 34 0.40
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.35
Consensus pattern (25 bp):
ATATATACATAATATAGTATTAAAG
Found at i:7178867 original size:16 final size:16
Alignment explanation
Indices: 7178829--7178867 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7178819 CTCCAAAAAA
*
7178829 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
7178845 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
7178861 AATAACT
1 AAAAACT
7178868 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:7179051 original size:30 final size:30
Alignment explanation
Indices: 7179015--7179202 Score: 286
Period size: 30 Copynumber: 6.3 Consensus size: 30
7179005 AGGTACAAGT
* *
7179015 GGTGGTGGAGCAAATGTGGCTAATAGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
* *
7179045 GGTGGTGGAGCAAGTGTAGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
*
7179075 GGTGGTGGAGCAAGTGTAGCTAATGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
7179105 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
*
7179135 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
* * * *
7179165 GGTGGTAGAACAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
7179195 GGTGGTGG
1 GGTGGTGG
7179203 CAAAGGCTAG
Statistics
Matches: 147, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 147 1.00
ACGTcount: A:0.23, C:0.06, G:0.46, T:0.24
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
Found at i:7179987 original size:87 final size:88
Alignment explanation
Indices: 7179849--7180406 Score: 431
Period size: 91 Copynumber: 6.2 Consensus size: 88
7179839 AACTCATTTA
* * * *
7179849 TCGCAATATGAATTGACTCTTT-AAAACTAAACATT-AAAAACAGAAATTGAAAATAGCTCAGCA
1 TCGCAATATGAGTTGATTTTTTGAAAAC-AAA-ATTGAAAAACAGAAATTGAAAATACCTCAGCA
* * *
7179912 CGTGAGCCAAGGCTCAACTCACTTC
64 TGTGAGCCGAGGCTCAACTCACCTC
* ** ** *
7179937 TCGCAATATGAGTTGA-TTTTT-AAAACAAAATTTGTAAAACAGATTTTGAAAATACCTTGGTAT
1 TCGCAATATGAGTTGATTTTTTGAAAACAAAA-TTGAAAAACAGAAATTGAAAATACCTCAGCAT
*
7180000 GTGA-CTCGAGGCTCAACTCACTTC
65 GTGAGC-CGAGGCTCAACTCACCTC
* * ** * * *
7180024 TAGTAATATGAGTTGA-TTTTTGCAAAGTATAAATTGAAAAAAAAAATCAATTGAAAATACCTCG
1 TCGCAATATGAGTTGATTTTTTG-AAAACA-AAATTG-AAAAACAGA--AATTGAAAATACCTCA
* * *
7180088 GCGTGTGATCTGAGGCTCAACTCACCTC
61 GCATGTGAGCCGAGGCTCAACTCACCTC
* * *
7180116 TCGCAATATGAGTTGATTTTTTTGACAAATATAAATTGAAAAAAAAAGAAATTGAAAATATCTCA
1 TCGCAATATGAGTTGA-TTTTTTGA-AAACA-AAATTG--AAAAACAGAAATTGAAAATACCTCA
* * *
7180181 --ACGTG-TCCTGAGGCTGAACTCACCTC
61 GCATGTGAGCC-GAGGCTCAACTCACCTC
*
7180207 TCGCAATATGAGTTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCAGC
1 TCGCAATATGAGTTGATTTTTT-G-AAAACAAAA-TTGAAAAACAGAAATTGAAAATACCTCAGC
* * * *
7180272 GTGTGAGTCAAGGCTCAACTCACCAC
63 ATGTGAGCCGAGGCTCAACTCACCTC
* * * * *
7180298 TCGAAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGC
1 TCGCAATATGAGTTGA-TTTTTTGAAA-ACA-AAATTGAAAAACAGAAATTGAAAATACCTCAGC
* * *
7180363 ATCT----TGAGGTTCAACTCACCTC
63 ATGTGAGCCGAGGCTCAACTCACCTC
* *
7180385 TCGTAATATGAGCTGATTTTTT
1 TCGCAATATGAGTTGATTTTTT
7180407 TTGAAAGACG
Statistics
Matches: 387, Mismatches: 59, Indels: 50
0.78 0.12 0.10
Matches are distributed among these distances:
85 1 0.00
86 12 0.03
87 99 0.26
88 15 0.04
89 29 0.07
90 23 0.06
91 106 0.27
92 60 0.16
93 16 0.04
94 17 0.04
95 9 0.02
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (88 bp):
TCGCAATATGAGTTGATTTTTTGAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGCATG
TGAGCCGAGGCTCAACTCACCTC
Found at i:7180262 original size:13 final size:14
Alignment explanation
Indices: 7180230--7180262 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
7180220 TGATTTTTTG
7180230 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
7180244 GAAAAACAGAATTT
1 GAAAAACAAAATTT
7180258 GAAAA
1 GAAAA
7180263 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:7180516 original size:13 final size:14
Alignment explanation
Indices: 7180484--7180516 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
7180474 TGATTTTTTG
7180484 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
7180498 GAAAAACAGAATTT
1 GAAAAACAAAATTT
7180512 GAAAA
1 GAAAA
7180517 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:7180569 original size:91 final size:87
Alignment explanation
Indices: 7180440--7180681 Score: 288
Period size: 91 Copynumber: 2.7 Consensus size: 87
7180430 CCTTAACGTG
* * * *
7180440 TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAAACA-AAATTTGAAAAA
1 TCTTAAGGCTCAACTCACCTCTCGAAATATGAGCTGATTTTTTTGAAAAACAGAAA-TTGAAAAA
* * * *
7180504 CAGAATTTGAAAATACCTCAGCG
65 CAGAAATGGAAAACACCTCAGCA
* * *
7180527 TGTGAGTCAAGGCTCAACTCACCACTCGAAATATGAGCTGATTTTTTTGAAACACAGAAATTGAA
1 TCT---T-AAGGCTCAACTCACCTCTCGAAATATGAGCTGATTTTTTTGAAAAACAGAAATTGAA
*
7180592 GAACAGAAATGGAAAACACCTCAGCA
62 AAACAGAAATGGAAAACACCTCAGCA
* * *
7180618 TCTTGAGGTTCAACTCACCTCTCGTAATATGAGCTGATTTTTTTTGAAAAACAGAAATTGAAAA
1 TCTTAAGGCTCAACTCACCTCTCGAAATATGAGCTGA-TTTTTTTGAAAAACAGAAATTGAAAA
7180682 TACCTCAACG
Statistics
Matches: 130, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
87 31 0.24
88 25 0.19
90 1 0.01
91 70 0.54
92 3 0.02
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (87 bp):
TCTTAAGGCTCAACTCACCTCTCGAAATATGAGCTGATTTTTTTGAAAAACAGAAATTGAAAAAC
AGAAATGGAAAACACCTCAGCA
Found at i:7180612 original size:254 final size:254
Alignment explanation
Indices: 7180156--7180735 Score: 1079
Period size: 254 Copynumber: 2.3 Consensus size: 254
7180146 ATAAATTGAA
* * * *
7180156 AAAAAAAGAAATTGAAAATATCTCAACGTGTCCTGAGGCTGAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
7180221 GATTTTTTGGAAAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGC
66 GATTTTTTGGAAAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGC
7180286 TCAACTCACCACTCGAAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGA
131 TCAACTCACCACTCGAAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGA
7180351 AAACACCTCAGCATCTTGAGGTTCAACTCACCTCTCGTAATATGAGCTGATTTTTTTTG
196 AAACACCTCAGCATCTTGAGGTTCAACTCACCTCTCGTAATATGAGCTGATTTTTTTTG
* * *
7180410 AAAGACGGAAATTGAAAATACCTTAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
7180475 GATTTTTTGGAAAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGC
66 GATTTTTTGGAAAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGC
7180540 TCAACTCACCACTCGAAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGA
131 TCAACTCACCACTCGAAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGA
7180605 AAACACCTCAGCATCTTGAGGTTCAACTCACCTCTCGTAATATGAGCTGATTTTTTTTG
196 AAACACCTCAGCATCTTGAGGTTCAACTCACCTCTCGTAATATGAGCTGATTTTTTTTG
*
7180664 AAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
7180729 GAGTTTT
66 GATTTTT
7180736 GACAAACAGA
Statistics
Matches: 314, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
254 314 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.28
Consensus pattern (254 bp):
AAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTGGAAAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGC
TCAACTCACCACTCGAAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGA
AAACACCTCAGCATCTTGAGGTTCAACTCACCTCTCGTAATATGAGCTGATTTTTTTTG
Found at i:7180869 original size:75 final size:75
Alignment explanation
Indices: 7180587--7181633 Score: 1370
Period size: 75 Copynumber: 14.3 Consensus size: 75
7180577 AACACAGAAA
* * * ** * *
7180587 TTGAAGAACAGAAATGGAAAACACCTC-A-GCATCTTGAGGTTCAACTCACCTCTCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
7180650 GCTGATTTTTT
66 GTTGA-TTTTT
*
7180661 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
7180726 GTTGA--GTT
66 GTTGATTTTT
* * * * *
7180734 TTGACAAACAGAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
7180797 GTTGATTTTT
66 GTTGATTTTT
* * *
7180807 TTGAAAAACAGAAGTTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
7180872 GCTGATTTTT
66 GTTGATTTTT
* *
7180882 TTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
7180947 GTTGA--TTT
66 GTTGATTTTT
* * * * * *
7180955 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
7181020 GTTGATTTTT
66 GTTGATTTTT
*
7181030 TTGAAAAACAGAAGTTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
7181095 GTTGA---TT
66 GTTGATTTTT
* *
7181102 TT-----ACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
7181162 GTTGA--GTT
66 GTTGATTTTT
* * * * *
7181170 TTGACAAACAGAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
7181233 GTTGATTTTT
66 GTTGATTTTT
* *
7181243 TTGGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
7181308 GCTGATTTTT
66 GTTGATTTTT
* *
7181318 TTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
7181383 GTTGA--TTT
66 GTTGATTTTT
* * * * * *
7181391 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
7181456 GTTGATTTTT
66 GTTGATTTTT
* * *
7181466 TTGGAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
7181531 GTTGA--GTT
66 GTTGATTTTT
* * * * * *
7181539 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
7181604 GTTGATTTTT
66 GTTGATTTTT
* * *
7181614 TT-AGAAACATAAATTAAAAA
1 TTGAAAAACAGAAATTGAAAA
7181634 AATGAAAATT
Statistics
Matches: 853, Mismatches: 98, Indels: 44
0.86 0.10 0.04
Matches are distributed among these distances:
67 60 0.07
68 4 0.00
71 71 0.08
72 6 0.01
73 291 0.34
74 40 0.05
75 347 0.41
76 34 0.04
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:7180988 original size:148 final size:147
Alignment explanation
Indices: 7180587--7181633 Score: 1365
Period size: 148 Copynumber: 7.1 Consensus size: 147
7180577 AACACAGAAA
* * ** * *
7180587 TTGAAGAACAGAAATGGAAAACACCTC-A-GCATCTTGAGGTTCAACTCACCTCTCGTAATATGA
1 TTGAA-AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* *
7180650 GCTGATTTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
65 GTTGA---TTTTTGACAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* *
7180715 TTGCAATATGAGTTGA--GTT
127 TCGCAATATGAGTTGATTTTT
* * * *
7180734 TTGACAAACAGAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
7180797 GTTGATTTTTTTGAAAAACAGAAGTTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCT
65 GTTGA--TTTTTGACAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
7180862 CACAATATGAGCTGATTTTT
128 CGCAATATGAGTTGATTTTT
*
7180882 TTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * *
7180947 GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCG
65 GTTGATTTTTGACAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
7181012 CAATATGAGTTGATTTTT
130 CAATATGAGTTGATTTTT
*
7181030 TTGAAAAACAGAAGTTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* *
7181095 GTTGA-TTTT-----ACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTTG
65 GTTGATTTTTGACAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
*
7181154 CAATATGAGTTGA--GTT
130 CAATATGAGTTGATTTTT
* * * *
7181170 TTGACAAACAGAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
7181233 GTTGATTTTTTTGGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTC
65 GTTGA--TTTTT-GACAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
*
7181297 TCGCAATATGAGCTGATTTTT
127 TCGCAATATGAGTTGATTTTT
*
7181318 TTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * *
7181383 GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCG
65 GTTGATTTTTGACAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
7181448 CAATATGAGTTGATTTTT
130 CAATATGAGTTGATTTTT
* *
7181466 TTGGAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TT-GAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * * *
7181531 GTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCG
65 GTTGATTTTTGACAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
7181596 CAATATGAGTTGATTTTT
130 CAATATGAGTTGATTTTT
* *
7181614 TT-AGAAACATAAATTAAAAA
1 TTGA-AAACAGAAATTGAAAA
7181634 AATGAAAATT
Statistics
Matches: 808, Mismatches: 68, Indels: 48
0.87 0.07 0.05
Matches are distributed among these distances:
138 37 0.05
139 2 0.00
140 25 0.03
141 4 0.00
142 56 0.07
146 130 0.16
147 83 0.10
148 389 0.48
149 8 0.01
150 74 0.09
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (147 bp):
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGACAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTT
Found at i:7181486 original size:436 final size:438
Alignment explanation
Indices: 7180587--7181613 Score: 1720
Period size: 436 Copynumber: 2.3 Consensus size: 438
7180577 AACACAGAAA
* * * * * *
7180587 TTGAAGAACAGAAATGGAAAACACCTCAGCA--TCTTGAGGTTCAACTCACCTCTCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* *
7180650 GCTGATTTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
66 GTTGA---GTTTT----AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
7180715 TTGCAATATGAGTTGAGTTTTGACAAACAGAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACT
124 TTGCAATATGAGTTGAGTTTTGACAAACAGAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACT
*
7180780 CACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAGTTGAAAATACCTCAACGTGTCTTG
189 CACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTG
7180845 AGGTTCAACTCACCTCTCACAATATGAGCTGATTTTTTTTAAAGACAGAAATTGAAAATACCTCA
254 AGGTTCAACTCACCTCTCACAATATGAGCTGATTTTTTTTAAAGACAGAAATTGAAAATACCTCA
7180910 ACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAA
319 ACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAA
7180975 TTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTT
384 TTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTT
* *
7181030 TTGAAAAACAGAAGTTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
7181095 GTTGA-TTTT-ACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTTGCAAT
66 GTTGAGTTTTAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAAT
7181158 ATGAGTTGAGTTTTGACAAACAGAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTAT
131 ATGAGTTGAGTTTTGACAAACAGAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTAT
*
7181223 CGCAATATGAGTTGATTTTTTTGGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCA
196 CGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCA
*
7181288 ACTCACCTCTCGCAATATGAGCTGATTTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTC
261 ACTCACCTCTCACAATATGAGCTGATTTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTC
7181353 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTC
326 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTC
7181418 AGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTT
391 AGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTT
* *
7181466 TTGGAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * * *
7181531 GTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCG
66 GTTGAGTTTT----AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTG
*
7181596 CAATATGAGTTGATTTTT
127 CAATATGAGTTGAGTTTT
7181614 TTAGAAACAT
Statistics
Matches: 551, Mismatches: 25, Indels: 17
0.93 0.04 0.03
Matches are distributed among these distances:
436 424 0.77
437 4 0.01
441 4 0.01
442 60 0.11
443 25 0.05
445 34 0.06
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (438 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGAGTTTTAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAAT
ATGAGTTGAGTTTTGACAAACAGAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTAT
CGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCA
ACTCACCTCTCACAATATGAGCTGATTTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTC
TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTC
AGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTT
Found at i:7181838 original size:14 final size:13
Alignment explanation
Indices: 7181803--7181847 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
7181793 TTGATTTTTG
*
7181803 AAAAAAAGAAATT
1 AAAAACAGAAATT
*
7181816 AAAAGCAGAAATT
1 AAAAACAGAAATT
7181829 GAAAAACAGAAATT
1 -AAAAACAGAAATT
7181843 AAAAA
1 AAAAA
7181848 TACCTCGGCG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 16 0.57
14 12 0.43
ACGTcount: A:0.71, C:0.04, G:0.11, T:0.13
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:7181859 original size:100 final size:101
Alignment explanation
Indices: 7181639--7181991 Score: 395
Period size: 100 Copynumber: 3.6 Consensus size: 101
7181629 AAAAAAATGA
*
7181639 AAATTGAAAATACCTCAGCGTGTCC-TGAGACTCAACTCACCTCTCGCAATATGAGTTGA--TTT
1 AAATTGAAAATACCTCAGCGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * * *
7181701 GAAAAGAAGAATTTGTAAGGCAAAAATTGAAAAACAG
65 GAAAAAAAGAAATTGAAAAGCAAAAATTGAAAAACAG
7181738 AAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
*
7181803 AAAAAAAGAAATT-AAAAGCAGAAATTGAAAAACAG
66 AAAAAAAGAAATTGAAAAGCAAAAATTGAAAAACAG
* * * *
7181838 AAATTAAAAATACCTCGGCGTG-CTCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGA--TTT
1 AAATTGAAAATACCTCAGCGTGCCT-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* *
7181900 ------------TTGAAAAGCATAAATTGAAAAAACGG
65 GAAAAAAAGAAATTGAAAAGCAAAAATTG-AAAAACAG
*
7181926 AAATTGAAAATACCTCAGCGTGTGACC-TGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAATTGAAAATACCTCAGC--GTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
7181990 TT
63 TT
7181992 TTGAAAGATA
Statistics
Matches: 225, Mismatches: 17, Indels: 31
0.82 0.06 0.11
Matches are distributed among these distances:
86 2 0.01
87 13 0.06
88 24 0.11
90 34 0.15
92 4 0.02
98 5 0.02
99 57 0.25
100 71 0.32
101 15 0.07
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.25
Consensus pattern (101 bp):
AAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAAAAAGAAATTGAAAAGCAAAAATTGAAAAACAG
Found at i:7181984 original size:90 final size:87
Alignment explanation
Indices: 7181816--7181991 Score: 255
Period size: 90 Copynumber: 2.0 Consensus size: 87
7181806 AAAAGAAATT
* * *
7181816 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGCTCCGAGGCTCAGCTCACCTC
1 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCAGCGTGCTCCGAGGCCCAACTCACCTC
7181881 TCGCAATATGAGTTGATTTTTG
66 TCGCAATATGAGTTGATTTTTG
* * *
7181903 AAAAGCATAAATTGAAAAAACGGAAATTGAAAATACCTCAGCGTG-TGACCTGAGGCCCAACTCA
1 AAAAGCAGAAATTG-AAAAACAGAAATTAAAAATACCTCAGCGTGCT--CC-GAGGCCCAACTCA
7181967 CCTCTCGCAATATGAGTTGATTTTT
62 CCTCTCGCAATATGAGTTGATTTTT
7181992 TTGAAAGATA
Statistics
Matches: 79, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
87 14 0.18
88 27 0.34
89 2 0.03
90 36 0.46
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.24
Consensus pattern (87 bp):
AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCAGCGTGCTCCGAGGCCCAACTCACCTC
TCGCAATATGAGTTGATTTTTG
Found at i:7198092 original size:71 final size:69
Alignment explanation
Indices: 7197994--7198168 Score: 226
Period size: 71 Copynumber: 2.5 Consensus size: 69
7197984 TTTTCAAGGG
* *
7197994 AAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
7198058 GTTTT
65 GTTTT
** * *
7198063 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTA
1 --AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTA
7198128 TGTTTT
64 TGTTTT
** * *
7198134 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
7198169 TTTAATTTTT
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
69 31 0.33
71 60 0.65
72 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.34
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTT
Found at i:7198289 original size:72 final size:71
Alignment explanation
Indices: 7198168--7198333 Score: 228
Period size: 72 Copynumber: 2.3 Consensus size: 71
7198158 GAGTTAAGCC
** * *
7198168 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGT-ACG
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGTCACG
7198231 CTGAGGCA
64 CTGAGGCA
7198239 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
*
7198304 TGAGGTA
65 TGAGGCA
* *
7198311 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
7198334 ACGTTGTTCA
Statistics
Matches: 85, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
71 15 0.18
72 66 0.78
73 4 0.05
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCT
GAGGCA
Found at i:7198436 original size:140 final size:140
Alignment explanation
Indices: 7198266--7198613 Score: 626
Period size: 140 Copynumber: 2.5 Consensus size: 140
7198256 TTAATTTCAA
7198266 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
7198331 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCCTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCCTTTAATTTCTACTTTT
7198396 TCAAAATCAG
131 TCAAAATCAG
7198406 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* *
7198471 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCCTTTAATTTCTACTTTT
7198536 TCAAAATCAG
131 TCAAAATCAG
*
7198546 CTCATATTGCGAGATGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TT
7198610 TCAA
62 TCAA
7198614 AAAAAAAATT
Statistics
Matches: 201, Mismatches: 3, Indels: 5
0.96 0.01 0.02
Matches are distributed among these distances:
139 2 0.01
140 170 0.85
142 23 0.11
143 6 0.03
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCCTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:7198731 original size:72 final size:72
Alignment explanation
Indices: 7198618--7198830 Score: 408
Period size: 72 Copynumber: 3.0 Consensus size: 72
7198608 TTTCAAAAAA
7198618 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGGAATTTCAATTTA
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGGAATTTCAATTTA
7198683 TGTTTTC
66 TGTTTTC
7198690 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGGAATTTCAATTTA
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGGAATTTCAATTTA
7198755 TGTTTTC
66 TGTTTTC
* *
7198762 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGGAATTTCAATTTA
7198827 TGTT
66 TGTT
7198831 CAAAATGAGT
Statistics
Matches: 139, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 139 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.32
Consensus pattern (72 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGGAATTTCAATTTA
TGTTTTC
Found at i:7198841 original size:49 final size:49
Alignment explanation
Indices: 7198784--7198879 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
7198774 ATATTGCGAG
*
7198784 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
7198833 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
7198880 TTCAAAATTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:7198927 original size:121 final size:121
Alignment explanation
Indices: 7198712--7198951 Score: 408
Period size: 121 Copynumber: 2.0 Consensus size: 121
7198702 ATATTGCGAG
*
7198712 AAATGAGTTGAGCCTCAAGACACGTTGAGGGAATTTCAATTTATGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGGAATTTCAATTTATGTTTTCAAAATTCAACTCATA
* *
7198777 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAATTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
* *
7198833 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGGAATTTCAATTTATGTTTTCAAAATTCAACTCATA
** *
7198898 TTGCGAGAGGTGAATTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT
66 TTGCGAGAAATGAATTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
7198952 GTCAAAAAAA
Statistics
Matches: 111, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
121 111 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGGAATTTCAATTTATGTTTTCAAAATTCAACTCATA
TTGCGAGAAATGAATTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:7199009 original size:75 final size:72
Alignment explanation
Indices: 7198833--7199026 Score: 298
Period size: 75 Copynumber: 2.7 Consensus size: 72
7198823 TTTCTGTTCA
* *
7198833 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAATCAACTCATA
7198898 TTGCGAG
66 TTGCGAG
** * *
7198905 AGGTGAATTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTC---AAAAATCAACTC
7198970 ATATTGCGAG
63 ATATTGCGAG
*
7198980 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
7199027 CAAAATGAGT
Statistics
Matches: 108, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
72 45 0.42
75 63 0.58
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (72 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAATCAACTCATA
TTGCGAG
Found at i:7199048 original size:196 final size:196
Alignment explanation
Indices: 7198640--7199227 Score: 984
Period size: 196 Copynumber: 3.0 Consensus size: 196
7198630 ATATTGCGAG
* * *
7198640 AAATGAGTTGAGCCTCAAGACACGTTGAGGGAATTTCAATTTATGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* * *
7198705 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGGAATTTCAATTTATGTTTTC---AAAAT
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTATGTTTTCAAAAAAAA
7198767 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTC
131 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTC
7198832 A
196 A
7198833 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
** * * * *
7198898 TTGCGAGAGGTGAATTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAAA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTATGTTTTCAAAAAAAA
7198963 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTC
131 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTC
7199028 A
196 A
7199029 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* * *
7199094 TTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTATGT-TTTC-AAAAAA
* *
7199159 AATCAACTCCTATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAGTTTCAATTTCTGT
129 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGT
7199224 TCA
194 TCA
7199227 A
1 A
7199228 TTTATGTTTT
Statistics
Matches: 368, Mismatches: 22, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
193 111 0.30
196 181 0.49
197 3 0.01
198 73 0.20
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (196 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTATGTTTTCAAAAAAAA
TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTC
A
Found at i:7199052 original size:49 final size:49
Alignment explanation
Indices: 7198980--7199075 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
7198970 ATATTGCGAG
*
7198980 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
7199029 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
7199076 TTCAAAATTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:7199155 original size:124 final size:122
Alignment explanation
Indices: 7198912--7199142 Score: 383
Period size: 121 Copynumber: 1.9 Consensus size: 122
7198902 GAGAGGTGAA
*
7198912 TTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAAATCAACTCATATTGC
1 TTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTC--AAAAAATCAACTCATATTGC
*
7198977 GAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCAAAATGAG
64 GAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCAAAATGAG
* *
7199036 TTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTC-AAAATTCAACTCATATTGCGA
1 TTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATCAACTCATATTGCGA
* *
7199100 GAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTT
66 GAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
7199143 TTGTCTTTCA
Statistics
Matches: 101, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
121 60 0.59
124 41 0.41
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (122 bp):
TTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATCAACTCATATTGCGA
GAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCAAAATGAG
Found at i:7199318 original size:73 final size:73
Alignment explanation
Indices: 7199032--7199545 Score: 485
Period size: 73 Copynumber: 6.7 Consensus size: 73
7199022 CTGTTCAAAA
* *
7199032 TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATT
1 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATT
**
7199096 GCGAGAAA
66 GCGAGAGG
* * * * * *
7199104 TGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAAAATCAACTCC
1 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTC----AAAAATCAACTCA
**
7199169 TATTGCGAGAAA
62 TATTGCGAGAGG
* * *
7199181 TGAGTTGAGCCTCAAGACACGTTGAGGTAGTTTCAATTTCTGTTCAATTTATGTTTTTCAAAAAT
1 TGAGTTGAGCCTCAGGACACGCTGA-G--G--T-AA----T-TTCAATTTCTGTTTTTCAAAAAT
7199246 CAACTCATATTGCGAGAGG
55 CAACTCATATTGCGAGAGG
* * *
7199265 TGAGTTGAGCCTCAGGACACACTGAGGTATTTTTAATTTCTGTTTTTCAAAAATCAACTCATATT
1 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATT
7199330 GCGAGAGG
66 GCGAGAGG
* * *
7199338 TGAGTTGAGCCTCGGGGCACGCTGAGGT-ATTGTCAATTTTTGTGTTTCAATTTATTTTTCAAAA
1 TGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAA--------TTTC----TGTTTTTCAAAA
* * **
7199402 ATTAACTCATATTACGAGAAA
53 ATCAACTCATATTGCGAGAGG
*
7199423 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATT
1 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATT
7199488 GCGAGAGG
66 GCGAGAGG
* * *
7199496 TGAGTTGAGCCTCA-AAGCACGTTGAGGTAATTTCAATTTCTGCTTTTCAA
1 TGAGTTGAGCCTCAGGA-CACGCTGAGGTAATTTCAATTTCTGTTTTTCAA
7199546 TTTATATTTT
Statistics
Matches: 369, Mismatches: 42, Indels: 61
0.78 0.09 0.13
Matches are distributed among these distances:
72 42 0.11
73 143 0.39
74 1 0.00
77 50 0.14
78 2 0.01
79 1 0.00
80 1 0.00
81 5 0.01
82 1 0.00
83 2 0.01
84 44 0.12
85 58 0.16
86 3 0.01
87 1 0.00
88 15 0.04
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34
Consensus pattern (73 bp):
TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATT
GCGAGAGG
Found at i:7199782 original size:74 final size:74
Alignment explanation
Indices: 7199553--7199783 Score: 322
Period size: 74 Copynumber: 3.1 Consensus size: 74
7199543 CAATTTATAT
7199553 TTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTAAT
1 TTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACGCTGAGGTAAT
7199617 TTCAATTTCTG
64 TTCAATTTCTG
* ** * ** * *
7199628 TTGTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAAACATGCTGAGGTATTTT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTT
*
7199693 CAATTTTTG
66 CAATTTCTG
*
7199702 TCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAATT
1 T-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATT
7199766 TCAATTTCTG
65 TCAATTTCTG
7199776 CTTTTCAA
1 -TTTTCAA
7199784 TTTATATTTT
Statistics
Matches: 133, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
74 116 0.87
75 17 0.13
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (74 bp):
TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTT
CAATTTCTG
Found at i:7199884 original size:75 final size:76
Alignment explanation
Indices: 7199794--7200015 Score: 281
Period size: 75 Copynumber: 2.9 Consensus size: 76
7199784 TTTATATTTT
*
7199794 TCAAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGATAATTTC
1 TCAAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATAATTTC
7199859 AATTTCTGT-TG
65 AATTTCTGTCTG
** * * * *
7199870 TCAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCA
1 TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATAATTTCA
* *
7199935 ATTTTTGTCTT
66 ATTTCTGTCTG
* * * *
7199946 TC--AAAAAATCAACTCATACTGCGAGAGGTAAGTTGAGCCTCAAGG-CACGTTGAGTTAATTTC
1 TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGATAATTTC
7200008 AATTTCTG
65 AATTTCTG
7200016 CTTTTAAATT
Statistics
Matches: 125, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
74 55 0.44
75 57 0.46
76 13 0.10
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (76 bp):
TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATAATTTCA
ATTTCTGTCTG
Found at i:7200042 original size:239 final size:239
Alignment explanation
Indices: 7199398--7200126 Score: 1257
Period size: 240 Copynumber: 3.1 Consensus size: 239
7199388 TTTATTTTTC
* * * * * *
7199398 AAAAATTAACTCATATTACGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
*
7199463 TGT-TTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAGCACGTTGAGGTAA
66 TGTCTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAA
7199526 TTTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGT
130 TTTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGT
7199591 TGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTC-AA
195 TGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAA
* *
7199635 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAAACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
7199700 TGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAAT
66 TGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAAT
7199765 TTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAAATTCAACTCATATTGCGAGAGGTGAGT
131 TTCAATTTCTGCTTTTCAATTTATATTTTTC-AAAAAAATTCAACTCATATTGCGAGAGGTGAGT
* *
7199830 TGAGCCTCAGGACACGCTAAGATAATTTCAATTTCTGTTGTCAAA
195 TGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAA
7199875 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
* * *
7199940 TGTCTTTCAAAAAATCAACTCATACTGCGAGAGGTAAGTTGAGCCTCAAGGCACGTTGAGTTAAT
66 TGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAAT
*
7200005 TTCAATTTCTGCTTTTAAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTT
131 TTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTT
* *
7200070 GAGCCTCAGGACATGTTGAGGTAATTTCAATTTCTGTTGTCAAAA
196 GAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTC-AAA
7200115 AAAAATCAACTC
1 AAAAATCAACTC
7200127 TGAGCCTTAG
Statistics
Matches: 466, Mismatches: 21, Indels: 7
0.94 0.04 0.01
Matches are distributed among these distances:
237 62 0.13
238 88 0.19
239 144 0.31
240 172 0.37
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (239 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
TGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAAT
TTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTT
GAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAA
Found at i:7200194 original size:240 final size:235
Alignment explanation
Indices: 7199453--7200225 Score: 976
Period size: 240 Copynumber: 3.2 Consensus size: 235
7199443 GCTGAGGTAA
* *
7199453 TTTCAATTTCTGT-TTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAGCAC
1 TTTCAATTTTTGTCTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCAC
7199516 GTTGAGGTAATTTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAATTCAACTCATATTGCG
65 GTTGAGGTAATTTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAATTCAACTCATATTGCG
7199581 AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTC-AAAAAAATCAAC
130 AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAAATCAAC
* ** * *
7199645 TCATA--TT-GCGAGAAATGAGTTGAGCCTTAAAACATGCTGAGGTAT
195 TCATAGCTTAG-G-TAAATGAGCCGAGACTT-ACA-ATGCT---GTAT
7199690 TTTCAATTTTTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACG
1 TTTCAATTTTTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACG
7199755 TTGAGGTAATTTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAAATTCAACTCATATTGCG
66 TTGAGGTAATTTCAATTTCTGCTTTTCAATTTATATTTTTC-AAAAAAATTCAACTCATATTGCG
* *
7199820 AGAGGTGAGTTGAGCCTCAGGACACGCTAAGATAATTTCAATTTCTGTTGTCAAAAAAAATCAAC
130 AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAAATCAAC
* ** * * *
7199885 TCATA--TT-GCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTAT
195 TCATAGCTTAG-G-TAAATGAGCCGAGACT-TACA-ATGCT---GTAT
* *
7199930 TTTCAATTTTTGTCTTTCAAAAAATCAACTCATACTGCGAGAGGTAAGTTGAGCCTCAAGGCACG
1 TTTCAATTTTTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACG
* *
7199995 TTGAGTTAATTTCAATTTCTGCTTTTAAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGA
66 TTGAGGTAATTTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGA
* *
7200060 GAGGTGAGTTGAGCCTCAGGACATGTTGAGGTAATTTCAATTTCTGTTGTCAAAAAAAAATCAAC
131 GAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTC-AAAAAAAATCAAC
* * * * * *
7200125 TC-TGAGCCTTAGGTCACT-CGCCGAGGTATTTTCAATTTCTGT-T
195 TCAT-AG-CTTAGGTAAATGAGCCGA-G-ACTTACAA-TGCTGTAT
* * *
7200168 TTTCAATTTTTGCCTTTCAAAAAAAATCGACTCATATTGCGAAAGGTGAGTTGAGCCT
1 TTTCAATTTTTGTCTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
7200226 TGGCTCACAC
Statistics
Matches: 489, Mismatches: 31, Indels: 29
0.89 0.06 0.05
Matches are distributed among these distances:
237 14 0.03
238 106 0.22
239 147 0.30
240 206 0.42
241 4 0.01
242 7 0.01
243 4 0.01
244 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34
Consensus pattern (235 bp):
TTTCAATTTTTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACG
TTGAGGTAATTTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGA
GAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAAATCAACT
CATAGCTTAGGTAAATGAGCCGAGACTTACAATGCTGTAT
Found at i:7203530 original size:60 final size:60
Alignment explanation
Indices: 7203494--7203613 Score: 159
Period size: 60 Copynumber: 2.0 Consensus size: 60
7203484 TTTTATTTTA
* ** * *
7203494 CACTCTTTTATATTTATTATTTTTTCTAATTTAATTTAATGTAACTTTAATTAAATTACT
1 CACTCTTTCATATTTATTATTTTTTCTAATTTAATTTAATAAAAATTAAATTAAATTACT
** * *
7203554 CACTCTTTCATATTTATTATTTTTTCTAATTTAATTTAATGTAACTTTAATTAAATTACT
1 CACTCTTTCATATTTATTATTTTTTCTAATTTAATTTAATAAAAATTAAATTAAATTACT
7203614 TAACAAATTA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.32, C:0.11, G:0.02, T:0.56
Consensus pattern (60 bp):
CACTCTTTCATATTTATTATTTTTTCTAATTTAATTTAATAAAAATTAAATTAAATTACT
Found at i:7207830 original size:13 final size:13
Alignment explanation
Indices: 7207814--7207844 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
7207804 CCTTCTCCTT
7207814 CCCTTTCCCCTAC
1 CCCTTTCCCCTAC
*
7207827 CCCTTTCCCTTAC
1 CCCTTTCCCCTAC
7207840 CCCTT
1 CCCTT
7207845 CCCTTTCCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.06, C:0.58, G:0.00, T:0.35
Consensus pattern (13 bp):
CCCTTTCCCCTAC
Found at i:7207830 original size:31 final size:31
Alignment explanation
Indices: 7207795--7207853 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
7207785 CCATTCTTCT
*
7207795 CCCCTTTCCCCTT-CTCCTTCCCTTTCCCCTA
1 CCCCTTT-CCCTTACCCCTTCCCTTTCCCCTA
7207826 CCCCTTTCCCTTACCCCTTCCCTTTCCC
1 CCCCTTTCCCTTACCCCTTCCCTTTCCC
7207854 GTTTTGAAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 5 0.19
31 21 0.81
ACGTcount: A:0.03, C:0.59, G:0.00, T:0.37
Consensus pattern (31 bp):
CCCCTTTCCCTTACCCCTTCCCTTTCCCCTA
Found at i:7207846 original size:12 final size:12
Alignment explanation
Indices: 7207796--7207849 Score: 56
Period size: 12 Copynumber: 4.4 Consensus size: 12
7207786 CATTCTTCTC
*
7207796 CCCTTTCCCCTT
1 CCCTTACCCCTT
*
7207808 CTCCTT-CCCTTT
1 C-CCTTACCCCTT
*
7207820 CCCCTACCCCTTT
1 CCCTTACCCC-TT
7207833 CCCTTACCCCTT
1 CCCTTACCCCTT
7207845 CCCTT
1 CCCTT
7207850 TCCCGTTTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
11 3 0.09
12 17 0.49
13 15 0.43
ACGTcount: A:0.04, C:0.57, G:0.00, T:0.39
Consensus pattern (12 bp):
CCCTTACCCCTT
Found at i:7207850 original size:18 final size:18
Alignment explanation
Indices: 7207796--7207853 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
7207786 CATTCTTCTC
7207796 CCCTTTCCCCTTCTCC-TT
1 CCCTTTCCCCTTC-CCTTT
*
7207814 CCCTTTCCCCTACCCCTTT
1 CCCTTTCCCCT-TCCCTTT
*
7207833 CCCTTACCCCTTCCCTTT
1 CCCTTTCCCCTTCCCTTT
7207851 CCC
1 CCC
7207854 GTTTTGAAGC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 22 0.63
19 13 0.37
ACGTcount: A:0.03, C:0.59, G:0.00, T:0.38
Consensus pattern (18 bp):
CCCTTTCCCCTTCCCTTT
Found at i:7210378 original size:20 final size:20
Alignment explanation
Indices: 7210353--7210392 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7210343 AATATTTTCT
*
7210353 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
7210373 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
7210393 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:7210395 original size:34 final size:35
Alignment explanation
Indices: 7210341--7210407 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
7210331 CAATCACCAG
* *
7210341 AAAATATTTTCTAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
7210376 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
7210408 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:7210399 original size:14 final size:14
Alignment explanation
Indices: 7210376--7210415 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
7210366 ACAGAAAAGT
*
7210376 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
7210390 AAATCATTTTACGG
1 AAAACATTTTACAG
7210404 AAAACATTTTAC
1 AAAACATTTTAC
7210416 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:7213682 original size:31 final size:31
Alignment explanation
Indices: 7213644--7213712 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 31
7213634 TAATTTTTTA
7213644 TTATTATATATTAATTTGAATTAAAAAAATT
1 TTATTATATATTAATTTGAATTAAAAAAATT
7213675 TTATTATATATTAATTTGAATTAAAAAAATT
1 TTATTATATATTAATTTGAATTAAAAAAATT
*
7213706 TCATTAT
1 TTATTAT
7213713 GAAAGGGCGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.49
Consensus pattern (31 bp):
TTATTATATATTAATTTGAATTAAAAAAATT
Found at i:7214692 original size:16 final size:17
Alignment explanation
Indices: 7214673--7214706 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
7214663 TATTTGTTTT
*
7214673 ATTTTAAATAA-ATAAA
1 ATTTTAAAAAAGATAAA
7214689 ATTTTAAAAAAGATAAA
1 ATTTTAAAAAAGATAAA
7214706 A
1 A
7214707 GACTCTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
ATTTTAAAAAAGATAAA
Found at i:7214916 original size:28 final size:26
Alignment explanation
Indices: 7214884--7214938 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
7214874 ATAACATTGA
*
7214884 ATTTTGAAATTTTTTATATTTTTAAAAC
1 ATTTTGAAA-TATTT-TATTTTTAAAAC
**
7214912 ATTTTTTAATATTTTATTTTTAAAAC
1 ATTTTGAAATATTTTATTTTTAAAAC
7214938 A
1 A
7214939 AATCATAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 13 0.54
27 4 0.17
28 7 0.29
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (26 bp):
ATTTTGAAATATTTTATTTTTAAAAC
Found at i:7214947 original size:26 final size:25
Alignment explanation
Indices: 7214895--7214952 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
7214885 TTTTGAAATT
** **
7214895 TTTTATATTTTTAAAACATTTTTTAA
1 TTTT-TATTTTTAAAACAAATCATAA
7214921 TATTTTATTTTTAAAACAAATCATAA
1 T-TTTTATTTTTAAAACAAATCATAA
7214947 TTTTTA
1 TTTTTA
7214953 AAATTTTTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 5 0.19
26 19 0.70
27 3 0.11
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (25 bp):
TTTTTATTTTTAAAACAAATCATAA
Found at i:7215173 original size:8 final size:9
Alignment explanation
Indices: 7215151--7215183 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
7215141 AGTTGAATCA
*
7215151 ATTTTTATA
1 ATTTTTATG
7215160 ATTTTTATG
1 ATTTTTATG
7215169 ATTTTTATG
1 ATTTTTATG
7215178 ATTTTT
1 ATTTTT
7215184 TTATTGTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.70
Consensus pattern (9 bp):
ATTTTTATG
Found at i:7215487 original size:21 final size:22
Alignment explanation
Indices: 7215461--7215514 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
7215451 ATTTTTATTT
7215461 TTATAATTTATT-TTTAAAAAA
1 TTATAATTTATTATTTAAAAAA
* *
7215482 TTATAATTTTTTATTTTAAAAA
1 TTATAATTTATTATTTAAAAAA
*
7215504 TATATATTTTA
1 T-TATAATTTA
7215515 AAAAATTTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 11 0.41
22 9 0.33
23 7 0.26
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTATAATTTATTATTTAAAAAA
Found at i:7215493 original size:37 final size:38
Alignment explanation
Indices: 7215452--7215539 Score: 110
Period size: 37 Copynumber: 2.4 Consensus size: 38
7215442 TTTTAAAGAA
* * *
7215452 TTTTTATTTTTATAATTTAT-TTTTAAAAAATTATAAT-
1 TTTTTATTTTAAAAATATATATTTTAAAAAATT-TAATG
*
7215489 TTTTTATTTTAAAAATATATATTTTAAAAAATTTCATG
1 TTTTTATTTTAAAAATATATATTTTAAAAAATTTAATG
7215527 TTTTTA-TTTAAAA
1 TTTTTATTTTAAAA
7215540 TATGGAAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
37 27 0.60
38 18 0.40
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (38 bp):
TTTTTATTTTAAAAATATATATTTTAAAAAATTTAATG
Found at i:7215828 original size:14 final size:15
Alignment explanation
Indices: 7215809--7215850 Score: 54
Period size: 13 Copynumber: 3.0 Consensus size: 15
7215799 ATTTTGAGAC
7215809 AAAATTTAATA-AAT
1 AAAATTTAATAGAAT
7215823 AAAA-TTAA-AGAAT
1 AAAATTTAATAGAAT
*
7215836 AAAATTCAATAGAAT
1 AAAATTTAATAGAAT
7215851 GGAAATATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
12 1 0.04
13 11 0.46
14 7 0.29
15 5 0.21
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (15 bp):
AAAATTTAATAGAAT
Found at i:7221533 original size:52 final size:53
Alignment explanation
Indices: 7221455--7221560 Score: 205
Period size: 52 Copynumber: 2.0 Consensus size: 53
7221445 GGTAGCAGAC
7221455 TATTCATTATTGACAACTCCGATTGGAGA-TTTTTTTTTTGATAATTTTATTT
1 TATTCATTATTGACAACTCCGATTGGAGATTTTTTTTTTTGATAATTTTATTT
7221507 TATTCATTATTGACAACTCCGATTGGAGATTTTTTTTTTTGATAATTTTATTT
1 TATTCATTATTGACAACTCCGATTGGAGATTTTTTTTTTTGATAATTTTATTT
7221560 T
1 T
7221561 TACTTTATAA
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 29 0.55
53 24 0.45
ACGTcount: A:0.25, C:0.09, G:0.11, T:0.55
Consensus pattern (53 bp):
TATTCATTATTGACAACTCCGATTGGAGATTTTTTTTTTTGATAATTTTATTT
Found at i:7222275 original size:26 final size:26
Alignment explanation
Indices: 7222246--7222302 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
7222236 ATTATTAAGT
7222246 TTTTAAGTGTTGTCAATATTGAATAA
1 TTTTAAGTGTTGTCAATATTGAATAA
7222272 TTTTAAGTGTTGTCAATATTGAATAA
1 TTTTAAGTGTTGTCAATATTGAATAA
7222298 TTTTA
1 TTTTA
7222303 GTATTAGGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.33, C:0.04, G:0.14, T:0.49
Consensus pattern (26 bp):
TTTTAAGTGTTGTCAATATTGAATAA
Found at i:7225255 original size:43 final size:43
Alignment explanation
Indices: 7225202--7225348 Score: 154
Period size: 43 Copynumber: 3.4 Consensus size: 43
7225192 TATCCCAAAT
* * * *
7225202 ATGGTCTTACATGTTATCACATATCGATGCCACTGTCCCAGAT
1 ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
* * *
7225245 AGGGTCTTACACGTAATCA-ATTAACGATGACAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACA-TATCGATGCCAATGTCCCAGAC
* * *
7225288 ACGATCTTACACGTAATCACA-ATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATAT-CGATGCCAATGTCCCAGAC
* *
7225331 ATAGTCTTACATGTAATC
1 ATGGTCTTACACGTAATC
7225349 TCACATTGAT
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
42 2 0.02
43 82 0.96
44 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
Found at i:7225992 original size:29 final size:30
Alignment explanation
Indices: 7225941--7226002 Score: 108
Period size: 29 Copynumber: 2.1 Consensus size: 30
7225931 ATTTATTTTA
7225941 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
*
7225971 TTGTTAATTTT-TTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
7226000 TTG
1 TTG
7226003 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 20 0.65
30 11 0.35
ACGTcount: A:0.24, C:0.03, G:0.15, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:7228228 original size:6 final size:6
Alignment explanation
Indices: 7228217--7228263 Score: 76
Period size: 6 Copynumber: 7.5 Consensus size: 6
7228207 ATAATTTAAT
7228217 AAATAA AAATAA AAATATA AAACTAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATA-A AAA-TAA AAATAA AAATAA AAATAA AAA
7228264 ATATATATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
6 29 0.74
7 8 0.21
8 2 0.05
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:7228299 original size:9 final size:9
Alignment explanation
Indices: 7228285--7228352 Score: 100
Period size: 9 Copynumber: 7.6 Consensus size: 9
7228275 TTTATACAAA
7228285 TAATTCGGT
1 TAATTCGGT
7228294 TAATTCGGT
1 TAATTCGGT
* *
7228303 TAATTTGGG
1 TAATTCGGT
*
7228312 TAATTCGGA
1 TAATTCGGT
7228321 TAATTCGGT
1 TAATTCGGT
*
7228330 TAATTCGAT
1 TAATTCGGT
7228339 TAATTCGGT
1 TAATTCGGT
7228348 TAATT
1 TAATT
7228353 TTATACTTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 52 1.00
ACGTcount: A:0.26, C:0.09, G:0.21, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:7228755 original size:20 final size:20
Alignment explanation
Indices: 7228732--7228844 Score: 86
Period size: 20 Copynumber: 5.5 Consensus size: 20
7228722 TTGAATCGAG
7228732 TTAAACAGA-AAAGAATTGAT
1 TTAAACA-ATAAAGAATTGAT
* *
7228752 TTAAAACAATAATGAATCGAT
1 TT-AAACAATAAAGAATTGAT
*
7228773 TCAAACAATAAAGAATTGAT
1 TTAAACAATAAAGAATTGAT
** * * **
7228793 CAAAACAATATACAACCGAT
1 TTAAACAATAAAGAATTGAT
7228813 TTAAA-AAGTAAAGAATTGAT
1 TTAAACAA-TAAAGAATTGAT
*
7228833 TCAAAACAATAA
1 T-TAAACAATAA
7228845 TGAAACTAAG
Statistics
Matches: 70, Mismatches: 18, Indels: 9
0.72 0.19 0.09
Matches are distributed among these distances:
19 2 0.03
20 45 0.64
21 21 0.30
22 2 0.03
ACGTcount: A:0.56, C:0.11, G:0.10, T:0.24
Consensus pattern (20 bp):
TTAAACAATAAAGAATTGAT
Found at i:7228786 original size:41 final size:40
Alignment explanation
Indices: 7228723--7228848 Score: 143
Period size: 41 Copynumber: 3.1 Consensus size: 40
7228713 TGTTAGAGTT
*
7228723 TGAATCGAGTTAAACAGA-AAAGAATTGATTTAAAACAATAA
1 TGAATCGA-TTAAACA-ATAAAGAATTGATTCAAAACAATAA
7228764 TGAATCGATTCAAACAATAAAGAATTGA-TCAAAACAAT-A
1 TGAATCGATT-AAACAATAAAGAATTGATTCAAAACAATAA
* *
7228803 TACAACCGATTTAAA-AAGTAAAGAATTGATTCAAAACAATAA
1 T-GAATCGA-TTAAACAA-TAAAGAATTGATTCAAAACAATAA
7228845 TGAA
1 TGAA
7228849 ACTAAGATTG
Statistics
Matches: 74, Mismatches: 4, Indels: 14
0.80 0.04 0.15
Matches are distributed among these distances:
39 4 0.05
40 31 0.42
41 37 0.50
42 2 0.03
ACGTcount: A:0.54, C:0.10, G:0.12, T:0.24
Consensus pattern (40 bp):
TGAATCGATTAAACAATAAAGAATTGATTCAAAACAATAA
Found at i:7228813 original size:40 final size:41
Alignment explanation
Indices: 7228741--7228845 Score: 135
Period size: 40 Copynumber: 2.6 Consensus size: 41
7228731 GTTAAACAGA
* * *
7228741 AAAGAATTGATTTAAAACAATAATGAATCGATTCAAACAA-T
1 AAAGAATTGATTCAAAACAATAATCAACCGATTCAAA-AAGT
*
7228782 AAAGAATTGA-TCAAAACAAT-ATACAACCGATTTAAAAAGT
1 AAAGAATTGATTCAAAACAATAAT-CAACCGATTCAAAAAGT
7228822 AAAGAATTGATTCAAAACAATAAT
1 AAAGAATTGATTCAAAACAATAAT
7228846 GAAACTAAGA
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
39 4 0.07
40 30 0.54
41 20 0.36
42 2 0.04
ACGTcount: A:0.55, C:0.10, G:0.10, T:0.25
Consensus pattern (41 bp):
AAAGAATTGATTCAAAACAATAATCAACCGATTCAAAAAGT
Found at i:7231121 original size:17 final size:18
Alignment explanation
Indices: 7231085--7231122 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
7231075 AATGTTTTTC
* *
7231085 AAAAGTACTTTTGGGCCA
1 AAAAATACTTTTGAGCCA
7231103 AAAAATACTTTTGAG-CA
1 AAAAATACTTTTGAGCCA
7231120 AAA
1 AAA
7231123 GTTAGAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (18 bp):
AAAAATACTTTTGAGCCA
Found at i:7240499 original size:46 final size:44
Alignment explanation
Indices: 7240395--7240502 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
7240385 TGTCTTTGAC
** * * *
7240395 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
7240439 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
7240485 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
7240503 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:7241454 original size:9 final size:9
Alignment explanation
Indices: 7241440--7241473 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
7241430 TTCTATTCTG
7241440 TTTCTTTTC
1 TTTCTTTTC
7241449 TTTCTTTT-
1 TTTCTTTTC
*
7241457 TTTCTATTC
1 TTTCTTTTC
7241466 TTTCTTTT
1 TTTCTTTT
7241474 GTTTTATGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTCTTTTC
Found at i:7241466 original size:17 final size:17
Alignment explanation
Indices: 7241440--7241473 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7241430 TTCTATTCTG
*
7241440 TTTCTTTTCTTTCTTTT
1 TTTCTATTCTTTCTTTT
7241457 TTTCTATTCTTTCTTTT
1 TTTCTATTCTTTCTTTT
7241474 GTTTTATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTCTATTCTTTCTTTT
Found at i:7241495 original size:5 final size:5
Alignment explanation
Indices: 7241482--7241554 Score: 64
Period size: 5 Copynumber: 14.6 Consensus size: 5
7241472 TTGTTTTATG
7241482 TATATA TATAA TATAA TATAA TAT-A T-TAA TGATAA TATAA TATAA -A-AA
1 TATA-A TATAA TATAA TATAA TATAA TATAA T-ATAA TATAA TATAA TATAA
* *
7241530 CATAA TCATTAC TATAA TATAA TAT
1 TATAA T-A-TAA TATAA TATAA TAT
7241555 TTTTTTAACA
Statistics
Matches: 57, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
3 3 0.05
4 6 0.11
5 35 0.61
6 10 0.18
7 3 0.05
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:7241507 original size:19 final size:19
Alignment explanation
Indices: 7241483--7241525 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
7241473 TGTTTTATGT
7241483 ATATATATAAT-ATAATATA
1 ATATAT-TAATGATAATATA
7241502 ATATATTAATGATAATATA
1 ATATATTAATGATAATATA
7241521 ATATA
1 ATATA
7241526 AAAACATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (19 bp):
ATATATTAATGATAATATA
Found at i:7241535 original size:24 final size:24
Alignment explanation
Indices: 7241489--7241553 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
7241479 ATGTATATAT
* * *
7241489 ATAATATAATATAATATATTAATG
1 ATAATATAATATAATAAAATAATC
7241513 ATAATATAATATAA-AAACATAATC
1 ATAATATAATATAATAAA-ATAATC
*
7241537 ATTACTATAATATAATA
1 A-TAATATAATATAATA
7241554 TTTTTTTAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
23 2 0.06
24 19 0.56
25 12 0.35
26 1 0.03
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.37
Consensus pattern (24 bp):
ATAATATAATATAATAAAATAATC
Found at i:7248478 original size:31 final size:31
Alignment explanation
Indices: 7248443--7248505 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
7248433 GGTCATTTGG
7248443 TTCAGCAACGTCCTGCAAACATGTTGAATTT
1 TTCAGCAACGTCCTGCAAACATGTTGAATTT
* *
7248474 TTCAGCAGCGTCCTGCAATCATGTTGAATTT
1 TTCAGCAACGTCCTGCAAACATGTTGAATTT
7248505 T
1 T
7248506 GATCAGGGAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.35
Consensus pattern (31 bp):
TTCAGCAACGTCCTGCAAACATGTTGAATTT
Found at i:7254573 original size:54 final size:54
Alignment explanation
Indices: 7254489--7254596 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 54
7254479 TTGCTGAGCT
**
7254489 ATAAAGATTCCTTCCCGAGAGTGTGCCACTTCAATACCAAGGAAATATTTTAAC
1 ATAAAGATTCCTTCCCGAGAGTGTAACACTTCAATACCAAGGAAATATTTTAAC
7254543 ATAAAGATTCCTTCCCGAGAGTGTAACACTTCAATACCAAGGAAATATTTTAAC
1 ATAAAGATTCCTTCCCGAGAGTGTAACACTTCAATACCAAGGAAATATTTTAAC
7254597 TTTTCGAGCT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (54 bp):
ATAAAGATTCCTTCCCGAGAGTGTAACACTTCAATACCAAGGAAATATTTTAAC
Found at i:7258198 original size:16 final size:16
Alignment explanation
Indices: 7258161--7258199 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
7258151 AAACTAAAGG
*
7258161 GAGAAGAGAAATATCA
1 GAGAAGAGAAAAATCA
7258177 GAGAAGAGAAAAAT-A
1 GAGAAGAGAAAAATCA
7258192 GAGGAAGA
1 GA-GAAGA
7258200 AGACAAGAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 3 0.14
16 18 0.86
ACGTcount: A:0.59, C:0.03, G:0.31, T:0.08
Consensus pattern (16 bp):
GAGAAGAGAAAAATCA
Found at i:7263797 original size:21 final size:21
Alignment explanation
Indices: 7263755--7263797 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7263745 TTCTAGTGTA
* *
7263755 TATATATATATCATATAAGTT
1 TATATACATATCATACAAGTT
*
7263776 TATATACATATCATACATGTT
1 TATATACATATCATACAAGTT
7263797 T
1 T
7263798 CCTTATTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.09, G:0.05, T:0.47
Consensus pattern (21 bp):
TATATACATATCATACAAGTT
Found at i:7265788 original size:15 final size:14
Alignment explanation
Indices: 7265768--7265798 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
7265758 GACGAGTAAC
7265768 CTGATATAATTTCAG
1 CTGATATAATTT-AG
7265783 CTGATATAATTTAG
1 CTGATATAATTTAG
7265797 CT
1 CT
7265799 CGGACGAGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (14 bp):
CTGATATAATTTAG
Found at i:7266211 original size:20 final size:21
Alignment explanation
Indices: 7266182--7266222 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
7266172 GTGACCCCTG
* *
7266182 TTTTGCAAAA-TTTCTAGTTT
1 TTTTGAAAAAGTTTCCAGTTT
7266202 TTTTGAAAAAGTTTCCAGTTT
1 TTTTGAAAAAGTTTCCAGTTT
7266223 AGTCCTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.27, C:0.10, G:0.12, T:0.51
Consensus pattern (21 bp):
TTTTGAAAAAGTTTCCAGTTT
Found at i:7270807 original size:21 final size:22
Alignment explanation
Indices: 7270781--7270821 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
7270771 GACAAAAAAC
*
7270781 TGCTATTTT-TTGTTTTTTTAA
1 TGCTATTTTCTTGTTGTTTTAA
7270802 TGCTATTTTCTTGTTGTTTT
1 TGCTATTTTCTTGTTGTTTT
7270822 CTCCTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.10, C:0.07, G:0.12, T:0.71
Consensus pattern (22 bp):
TGCTATTTTCTTGTTGTTTTAA
Found at i:7270999 original size:8 final size:8
Alignment explanation
Indices: 7270986--7271028 Score: 50
Period size: 8 Copynumber: 5.0 Consensus size: 8
7270976 TGAAAATATT
7270986 TATTTTAA
1 TATTTTAA
7270994 TATTTTAA
1 TATTTTAA
7271002 TATTTTTAA
1 TA-TTTTAA
*
7271011 TATATTATA
1 TATTTTA-A
7271020 TATATTTAA
1 TAT-TTTAA
7271029 AATTATATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
8 14 0.47
9 13 0.43
10 3 0.10
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
TATTTTAA
Found at i:7271027 original size:18 final size:18
Alignment explanation
Indices: 7270989--7271037 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 18
7270979 AAATATTTAT
* *
7270989 TTTAATATTTTA-ATATT
1 TTTAATATATTATATATA
7271006 TTTAATATATTATATATA
1 TTTAATATATTATATATA
7271024 TTTAA-A-ATTATATA
1 TTTAATATATTATATA
7271038 AAAAAGTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 8 0.28
17 12 0.41
18 9 0.31
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTAATATATTATATATA
Found at i:7287590 original size:30 final size:32
Alignment explanation
Indices: 7287554--7287626 Score: 98
Period size: 31 Copynumber: 2.3 Consensus size: 32
7287544 ATTTTAATTA
*
7287554 AAAATATAAAAG-AAT-TATAAAAAAATTTAT
1 AAAATATAAAAGAAATATAGAAAAAAATTTAT
*
7287584 AAAATAT-ATAGAAATATAGAAAAAAATTTAT
1 AAAATATAAAAGAAATATAGAAAAAAATTTAT
7287615 AAAATTATAAAA
1 AAAA-TATAAAA
7287627 TTTTATAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
29 3 0.08
30 10 0.28
31 18 0.50
32 3 0.08
33 2 0.06
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (32 bp):
AAAATATAAAAGAAATATAGAAAAAAATTTAT
Found at i:7287653 original size:19 final size:18
Alignment explanation
Indices: 7287604--7287693 Score: 83
Period size: 18 Copynumber: 4.8 Consensus size: 18
7287594 GAAATATAGA
*
7287604 AAAAAATTTATAAAATTAT
1 AAAAAA-TTATAAAATTGT
** *
7287623 AAAATTTTATAAAGTTGT
1 AAAAAATTATAAAATTGT
*
7287641 AAGAAAATTATAAAAAATGT
1 AA-AAAATTAT-AAAATTGT
7287661 AAAGAAATT-TAAAATTCGT
1 AAA-AAATTATAAAATT-GT
7287680 AAAAAATTATAAAA
1 AAAAAATTATAAAA
7287694 ATTATCTACT
Statistics
Matches: 57, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
18 22 0.39
19 22 0.39
20 13 0.23
ACGTcount: A:0.60, C:0.01, G:0.07, T:0.32
Consensus pattern (18 bp):
AAAAAATTATAAAATTGT
Found at i:7287696 original size:20 final size:19
Alignment explanation
Indices: 7287604--7287696 Score: 77
Period size: 19 Copynumber: 4.9 Consensus size: 19
7287594 GAAATATAGA
*
7287604 AAAAAATT-TATAAAATTAT
1 AAAAAATTATA-AAAATTGT
** *
7287623 AAAATTTTAT-AAAGTTGT
1 AAAAAATTATAAAAATTGT
*
7287641 AAGAAAATTATAAAAAATGT
1 AA-AAAATTATAAAAATTGT
7287661 AAAGAAATT-T-AAAATTCGT
1 AAA-AAATTATAAAAATT-GT
7287680 AAAAAATTATAAAAATT
1 AAAAAATTATAAAAATT
7287697 ATCTACTAAA
Statistics
Matches: 58, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
18 18 0.31
19 20 0.34
20 20 0.34
ACGTcount: A:0.59, C:0.01, G:0.06, T:0.33
Consensus pattern (19 bp):
AAAAAATTATAAAAATTGT
Found at i:7287927 original size:19 final size:18
Alignment explanation
Indices: 7287905--7288018 Score: 68
Period size: 19 Copynumber: 5.9 Consensus size: 18
7287895 TTTATAATTT
7287905 TTTTATGATTTTTATAAAA
1 TTTTAT-ATTTTTATAAAA
* * *
7287924 TTTTACAATTTTTTTATAA
1 TTTTA-TATTTTTATAAAA
*
7287943 TTTCATACTATTTTTATAATA
1 TTT--TA-TATTTTTATAAAA
* * *
7287964 TTTTCTATTTTGA-AATAT
1 TTTTATATTTTTATAA-AA
7287982 TTTTATATTCTTTATTAAAA
1 TTTTATATT-TTTA-TAAAA
*
7288002 TTTAATAATTTTTATAA
1 TTTTAT-ATTTTTATAA
7288019 TTTTTATTGA
Statistics
Matches: 72, Mismatches: 15, Indels: 16
0.70 0.15 0.16
Matches are distributed among these distances:
17 2 0.03
18 15 0.21
19 25 0.35
20 10 0.14
21 20 0.28
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (18 bp):
TTTTATATTTTTATAAAA
Found at i:7287985 original size:18 final size:18
Alignment explanation
Indices: 7287950--7287984 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7287940 TAATTTCATA
*
7287950 CTATTTTTATAATATTTT
1 CTATTTTGATAATATTTT
7287968 CTATTTTGA-AATATTTT
1 CTATTTTGATAATATTTT
7287985 TATATTCTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.63
Consensus pattern (18 bp):
CTATTTTGATAATATTTT
Found at i:7288020 original size:9 final size:9
Alignment explanation
Indices: 7287894--7288048 Score: 61
Period size: 9 Copynumber: 16.4 Consensus size: 9
7287884 TTTTGATGTA
7287894 TTTTATAATTT
1 TTTTATAA--T
*
7287905 TTTTATGAT
1 TTTTATAAT
*
7287914 TTTTATAAAA
1 TTTTAT-AAT
*
7287924 TTTTACAATTT
1 TTTTATAA--T
7287935 TTTTATAA-
1 TTTTATAAT
*
7287943 TTTCATACTAT
1 TTTTATA--AT
7287954 TTTTATAAT
1 TTTTATAAT
*
7287963 ATTTTCT-AT
1 -TTTTATAAT
* *
7287972 TTTGAAATAT
1 TTTTATA-AT
7287982 TTTTAT-AT
1 TTTTATAAT
*
7287990 TCTTTATTAAAA
1 T-TTTA-T-AAT
*
7288002 TTTAATAAT
1 TTTTATAAT
7288011 TTTTATAAT
1 TTTTATAAT
*
7288020 TTTTATTGA-
1 TTTTA-TAAT
7288029 TTTT-T-AT
1 TTTTATAAT
7288036 TTTTATAAT
1 TTTTATAAT
7288045 TTTT
1 TTTT
7288049 TTGCCACATA
Statistics
Matches: 108, Mismatches: 19, Indels: 36
0.66 0.12 0.22
Matches are distributed among these distances:
6 1 0.01
7 5 0.05
8 13 0.12
9 42 0.39
10 22 0.20
11 23 0.21
12 2 0.02
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (9 bp):
TTTTATAAT
Found at i:7288697 original size:12 final size:12
Alignment explanation
Indices: 7288677--7288716 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
7288667 CTTATCTTTT
*
7288677 TTTTTAATTTCA
1 TTTTGAATTTCA
7288689 TTTTGAATTTCA
1 TTTTGAATTTCA
7288701 TTTTGAATTTCA
1 TTTTGAATTTCA
7288713 TTTT
1 TTTT
7288717 ATTTAAAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.23, C:0.07, G:0.05, T:0.65
Consensus pattern (12 bp):
TTTTGAATTTCA
Found at i:7289358 original size:29 final size:29
Alignment explanation
Indices: 7289326--7289403 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 29
7289316 GTTTTGGAAG
*
7289326 AAATAAATTTGACAAGATGGGATATGAAA
1 AAATAAATTTGACGAGATGGGATATGAAA
* * * *
7289355 AAATAAATTTGACGTGATGCGTTTTGAAA
1 AAATAAATTTGACGAGATGGGATATGAAA
* *
7289384 AAATTATTTTGACGAGATGG
1 AAATAAATTTGACGAGATGG
7289404 ATTTTTTTTT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.42, C:0.05, G:0.22, T:0.31
Consensus pattern (29 bp):
AAATAAATTTGACGAGATGGGATATGAAA
Found at i:7289408 original size:29 final size:29
Alignment explanation
Indices: 7289317--7289408 Score: 89
Period size: 29 Copynumber: 3.1 Consensus size: 29
7289307 GTAAATATTG
* *
7289317 TTTTGGAAGAAATAAATTTGACAAGATGGGA
1 TTTT-GAAAAAATAAATTTGACGAGAT-GGA
* *
7289348 -TATGAAAAAATAAATTTGACGTGATGCG-
1 TTTTGAAAAAATAAATTTGACGAGATG-GA
* *
7289376 TTTTGAAAAAATTATTTTGACGAGATGGA
1 TTTTGAAAAAATAAATTTGACGAGATGGA
7289405 TTTT
1 TTTT
7289409 TTTTTACAGC
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
28 2 0.04
29 46 0.92
30 2 0.04
ACGTcount: A:0.39, C:0.04, G:0.22, T:0.35
Consensus pattern (29 bp):
TTTTGAAAAAATAAATTTGACGAGATGGA
Found at i:7290039 original size:26 final size:26
Alignment explanation
Indices: 7289969--7290050 Score: 88
Period size: 26 Copynumber: 3.4 Consensus size: 26
7289959 ATAGAATTGA
7289969 CAAAAT-TTCGTAAAAGAATTAGGCG
1 CAAAATATTCGTAAAAGAATTAGGCG
*
7289994 C-AAA-A-TC-T--TAGAATTAGGCG
1 CAAAATATTCGTAAAAGAATTAGGCG
*
7290014 CAAAATATTCGTAAAAGAATTGGGCG
1 CAAAATATTCGTAAAAGAATTAGGCG
*
7290040 CAAAATCTTCG
1 CAAAATATTCG
7290051 GAACGATGCA
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
20 12 0.26
21 3 0.07
22 2 0.04
23 4 0.09
24 4 0.09
25 1 0.02
26 20 0.43
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (26 bp):
CAAAATATTCGTAAAAGAATTAGGCG
Found at i:7300940 original size:22 final size:22
Alignment explanation
Indices: 7300912--7300960 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
7300902 ATCCTTCTAT
*
7300912 TTTTTATTTAGTCTTATTTTTA
1 TTTTTATTTACTCTTATTTTTA
* *
7300934 TTTTTATTTTCTTTTATTTTTA
1 TTTTTATTTACTCTTATTTTTA
7300956 TTTTT
1 TTTTT
7300961 CTTTTGATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (22 bp):
TTTTTATTTACTCTTATTTTTA
Found at i:7300948 original size:17 final size:17
Alignment explanation
Indices: 7300928--7300992 Score: 78
Period size: 17 Copynumber: 3.8 Consensus size: 17
7300918 TTTAGTCTTA
7300928 TTTTTATTTTTATTTTC
1 TTTTTATTTTTATTTTC
7300945 -TTTTATTTTTATTTTTC
1 TTTTTATTTTTA-TTTTC
*
7300962 TTTTGATTTTTATTTTC
1 TTTTTATTTTTATTTTC
* * *
7300979 ATTTCAATTTTATT
1 TTTTTATTTTTATT
7300993 ATTTCATTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
16 11 0.26
17 21 0.50
18 10 0.24
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.77
Consensus pattern (17 bp):
TTTTTATTTTTATTTTC
Found at i:7300972 original size:7 final size:6
Alignment explanation
Indices: 7300925--7300982 Score: 66
Period size: 6 Copynumber: 10.0 Consensus size: 6
7300915 TTATTTAGTC
* * *
7300925 TTATTT TTATTT TTA-TT TT-CTT TTATTT TTATTT TTCTTT TGATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
*
7300971 TTATTT TCATTT
1 TTATTT TTATTT
7300983 CAATTTTATT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
5 8 0.18
6 36 0.82
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (6 bp):
TTATTT
Found at i:7317044 original size:18 final size:18
Alignment explanation
Indices: 7317021--7317060 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
7317011 CACACAATGT
7317021 TTTAAAGAAAGGCTACAC
1 TTTAAAGAAAGGCTACAC
7317039 TTTAAAGAAAGGCTACAC
1 TTTAAAGAAAGGCTACAC
7317057 TTTA
1 TTTA
7317061 CGCCTACCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (18 bp):
TTTAAAGAAAGGCTACAC
Found at i:7320996 original size:86 final size:86
Alignment explanation
Indices: 7320893--7321066 Score: 312
Period size: 86 Copynumber: 2.0 Consensus size: 86
7320883 AATGTGATTT
* *
7320893 TTTAATAAAATTTATTTTAAAGATAAAATGTGAAATTTATACCAATATAAAATTTTAACACGAAT
1 TTTAATAAAAGTTATTTTAAAGATAAAATGTGAAATTGATACCAATATAAAATTTTAACACGAAT
7320958 ATTTTATGGCATAATTAATAA
66 ATTTTATGGCATAATTAATAA
* *
7320979 TTTAATAAAAGTTATTTTAAAGATAAAATGTGAAATTGATACTAATATAAAATTTTAACATGAAT
1 TTTAATAAAAGTTATTTTAAAGATAAAATGTGAAATTGATACCAATATAAAATTTTAACACGAAT
7321044 ATTTTATGGCATAATTAATAA
66 ATTTTATGGCATAATTAATAA
7321065 TT
1 TT
7321067 CAATTTTAAT
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
86 84 1.00
ACGTcount: A:0.47, C:0.05, G:0.08, T:0.40
Consensus pattern (86 bp):
TTTAATAAAAGTTATTTTAAAGATAAAATGTGAAATTGATACCAATATAAAATTTTAACACGAAT
ATTTTATGGCATAATTAATAA
Found at i:7321421 original size:26 final size:26
Alignment explanation
Indices: 7321381--7321430 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
7321371 TGAGATGGAA
*
7321381 GAGAATAAAAGTTTTAAGGGAAAAGT
1 GAGAATAAAAATTTTAAGGGAAAAGT
* **
7321407 GAGAGTAAAAATTTTGGGGGAAAA
1 GAGAATAAAAATTTTAAGGGAAAA
7321431 TAAAAGGTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.22
Consensus pattern (26 bp):
GAGAATAAAAATTTTAAGGGAAAAGT
Found at i:7321483 original size:91 final size:92
Alignment explanation
Indices: 7321355--7321539 Score: 230
Period size: 95 Copynumber: 2.0 Consensus size: 92
7321345 TTGGGGGGTT
7321355 TGGGATAGATGAGAGGTGAGATGGAAGAGAATAAAAGTTTTAAGGGAAAAGT-GA-GAGTAAAAA
1 TGGGATAGATGAGAGGTGAGATGGAAGAGAATAAAAGTTTTAAGGGAAAAGTGGAGGAGTAAAAA
* **
7321418 TTTTGGGGGAAAATAAAAGGTTTTGAG
66 TTTTGGGGAAAAATAAAAAATTTTGAG
* * * * * * * *
7321445 TGGGGTAGATGGGAGGTGGGATGGGAAGGGAGTAAAAGTTTTAGGGGGAAAGTGGGAGGGAGTGA
1 TGGGATAGATGAGAGGTGAGAT-GGAAGAGAATAAAAGTTTTAAGGGAAAAGT-GGA-GGAGTAA
7321510 AAATTTTGGGGAAAAATAAAAAATTTTGAG
63 AAATTTTGGGGAAAAATAAAAAATTTTGAG
7321540 GGTTTTGGGG
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
90 19 0.24
91 26 0.33
93 2 0.03
95 32 0.41
ACGTcount: A:0.38, C:0.00, G:0.39, T:0.23
Consensus pattern (92 bp):
TGGGATAGATGAGAGGTGAGATGGAAGAGAATAAAAGTTTTAAGGGAAAAGTGGAGGAGTAAAAA
TTTTGGGGAAAAATAAAAAATTTTGAG
Found at i:7329335 original size:17 final size:19
Alignment explanation
Indices: 7329302--7329339 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
7329292 TATGCTAATT
7329302 TTATTATTGTAAAATAGAA
1 TTATTATTGTAAAATAGAA
7329321 TTATTATT-T-AAATAGAA
1 TTATTATTGTAAAATAGAA
7329338 TT
1 TT
7329340 TTAAACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 10 0.53
18 1 0.05
19 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (19 bp):
TTATTATTGTAAAATAGAA
Found at i:7329385 original size:34 final size:34
Alignment explanation
Indices: 7329346--7329461 Score: 103
Period size: 34 Copynumber: 3.3 Consensus size: 34
7329336 AATTTTAAAC
7329346 ATATTAATTATCACTTAATTAATTTGAGTTAATT
1 ATATTAATTATCACTTAATTAATTTGAGTTAATT
* * * *
7329380 ATATTAATTAGTTA-TTATTTTGAA--TAATGTTACTTCT
1 ATATTAATTA-TCACTTA-ATT-AATTTGA-GTTA-AT-T
*
7329417 CAAATTAATTATCACTTAATTAATTTGAGTTAATT
1 -ATATTAATTATCACTTAATTAATTTGAGTTAATT
7329452 ATATTAATTA
1 ATATTAATTA
7329462 GTTATTATTT
Statistics
Matches: 62, Mismatches: 10, Indels: 20
0.67 0.11 0.22
Matches are distributed among these distances:
34 24 0.39
35 9 0.15
36 6 0.10
37 9 0.15
38 14 0.23
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (34 bp):
ATATTAATTATCACTTAATTAATTTGAGTTAATT
Found at i:7329430 original size:72 final size:72
Alignment explanation
Indices: 7329348--7329486 Score: 278
Period size: 72 Copynumber: 1.9 Consensus size: 72
7329338 TTTTAAACAT
7329348 ATTAATTATCACTTAATTAATTTGAGTTAATTATATTAATTAGTTATTATTTTGAATAATGTTAC
1 ATTAATTATCACTTAATTAATTTGAGTTAATTATATTAATTAGTTATTATTTTGAATAATGTTAC
7329413 TTCTCAA
66 TTCTCAA
7329420 ATTAATTATCACTTAATTAATTTGAGTTAATTATATTAATTAGTTATTATTTTGAATAATGTTAC
1 ATTAATTATCACTTAATTAATTTGAGTTAATTATATTAATTAGTTATTATTTTGAATAATGTTAC
7329485 TT
66 TT
7329487 TGCATTAATT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.36, C:0.06, G:0.07, T:0.51
Consensus pattern (72 bp):
ATTAATTATCACTTAATTAATTTGAGTTAATTATATTAATTAGTTATTATTTTGAATAATGTTAC
TTCTCAA
Found at i:7332761 original size:58 final size:58
Alignment explanation
Indices: 7332671--7333483 Score: 1626
Period size: 58 Copynumber: 14.0 Consensus size: 58
7332661 TTAAGAGATA
7332671 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
1 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
7332729 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
1 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
7332787 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
1 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
7332845 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
1 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
7332903 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
1 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
7332961 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
1 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
7333019 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
1 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
7333077 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
1 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
7333135 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
1 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
7333193 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
1 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
7333251 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
1 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
7333309 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
1 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
7333367 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
1 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
7333425 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
1 AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
7333483 A
1 A
7333484 TTTTTAGGAC
Statistics
Matches: 755, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 755 1.00
ACGTcount: A:0.35, C:0.22, G:0.12, T:0.31
Consensus pattern (58 bp):
AGTTAGGTAGCATAGCAGTTTCATCAAAAACAACATCTCTGCTAATCACAACTTTTCT
Found at i:7335652 original size:13 final size:14
Alignment explanation
Indices: 7335634--7335664 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
7335624 CCAATTTGTG
7335634 AAAAA-TAAAATAA
1 AAAAATTAAAATAA
7335647 AAAAATTAAAATAA
1 AAAAATTAAAATAA
7335661 AAAA
1 AAAA
7335665 CACACAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (14 bp):
AAAAATTAAAATAA
Found at i:7342922 original size:21 final size:21
Alignment explanation
Indices: 7342886--7342941 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
7342876 TGCAAACACA
*
7342886 AATAATATTTTATAAAAATTGT
1 AATAAT-TTTTTTAAAAATTGT
*
7342908 AATAATTTTTTTAAAAATTTT
1 AATAATTTTTTTAAAAATTGT
* *
7342929 CATACTTTTTTTA
1 AATAATTTTTTTA
7342942 TAACCCTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 24 0.80
22 6 0.20
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.54
Consensus pattern (21 bp):
AATAATTTTTTTAAAAATTGT
Found at i:7343712 original size:3 final size:3
Alignment explanation
Indices: 7343704--7343731 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7343694 CTAATAGCAA
7343704 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
7343732 GGCTGTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7345132 original size:24 final size:23
Alignment explanation
Indices: 7345098--7345150 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
7345088 TTTTTGTAGA
* *
7345098 TTCAGAATTTAGTCCTTTTTA-TT
1 TTCAGAATTTAAT-ATTTTTACTT
7345121 TTCAGAATTTTAATATTTTTACTT
1 TTCAGAA-TTTAATATTTTTACTT
7345145 TTCAGA
1 TTCAGA
7345151 TTTCAAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 13 0.50
24 13 0.50
ACGTcount: A:0.26, C:0.11, G:0.08, T:0.55
Consensus pattern (23 bp):
TTCAGAATTTAATATTTTTACTT
Found at i:7348780 original size:17 final size:17
Alignment explanation
Indices: 7348758--7348791 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7348748 ATTTTGGGCC
7348758 CTAAACCAAACAACCCA
1 CTAAACCAAACAACCCA
7348775 CTAAACCAAACAACCCA
1 CTAAACCAAACAACCCA
7348792 ATAACCCGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.41, G:0.00, T:0.06
Consensus pattern (17 bp):
CTAAACCAAACAACCCA
Found at i:7362627 original size:127 final size:127
Alignment explanation
Indices: 7362402--7363557 Score: 2176
Period size: 127 Copynumber: 9.1 Consensus size: 127
7362392 TTTTAAATTG
* * * **
7362402 ACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTCATT-TTTGTTTTTCAAAATCAACTCATATTG
1 ACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTG
* *
7362465 TTAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAATCA
65 CTAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
* *
7362528 ACTCACATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGT
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
7362593 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
7362655 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
7362720 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
7362782 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
7362847 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
7362909 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
7362974 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
7363036 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
7363101 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
7363163 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
7363228 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
7363290 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
7363355 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
7363417 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
*
7363482 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGTTT-TCAA-AATTCA
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAA-TCA
7363543 ACTCATATTGCGAGA
1 ACTCATATTGCGAGA
7363558 AATGAGTTGA
Statistics
Matches: 1017, Mismatches: 10, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
125 2 0.00
126 52 0.05
127 963 0.95
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (127 bp):
ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
Done.