Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 25 of 167
Found at i:7362736 original size:254 final size:254
Alignment explanation
Indices: 7362402--7363816 Score: 2202
Period size: 254 Copynumber: 5.6 Consensus size: 254
7362392 TTTTAAATTG
* * * **
7362402 ACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTCATT-TTTGTTTTTCAAAATCAACTCATATTG
1 ACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTG
* *
7362465 TTAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAATCAAC
65 CTAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAAC
* *
7362530 TCACATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGTTA
130 TCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTA
7362595 GAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
195 GAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
7362655 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
7362720 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAACT
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAACT
7362785 CATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTAG
131 CATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTAG
7362850 AGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
196 AGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
7362909 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
7362974 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAACT
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAACT
7363039 CATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTAG
131 CATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTAG
7363104 AGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
196 AGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
7363163 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
7363228 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAACT
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAACT
7363293 CATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTAG
131 CATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTAG
7363358 AGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
196 AGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
7363417 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
*
7363482 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGTTT-TCAA-AATTCAAC
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAA-TCAAC
* ** * **
7363545 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACTTTGAGGTATTTTTAACTTTTGTTTTCAAA
130 TCATATTGCGAG--A-G-G-TG-G-GTTGA-AC-CTTTTA---ATTCCT-AC---T-TTTTCAAA
* * * * ** * *
7363610 ATCAACTTATATTGCGAGAAGTGAGTTGAGCCTCGGGGCATGCTGAGG-----T--ATTTCTAGT
178 ATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCT-GT
**
7363668 TT-T--A-AATTG
242 TTGTCAAGAATCA
* * * **
7363677 ACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTCATT-TTTGTTTTTCAAAATCAACTCATATTG
1 ACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTG
* *
7363740 TTAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGTTT-TCAA-AATTCAA
65 CTAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAA-TCAA
7363803 CTCATATTGCGAGA
129 CTCATATTGCGAGA
7363817 AATGAGTTGA
Statistics
Matches: 1108, Mismatches: 32, Indels: 40
0.94 0.03 0.03
Matches are distributed among these distances:
252 2 0.00
253 52 0.05
254 835 0.75
255 1 0.00
256 1 0.00
257 2 0.00
258 2 0.00
259 102 0.09
260 36 0.03
261 3 0.00
262 5 0.00
263 7 0.01
264 4 0.00
265 5 0.00
266 2 0.00
269 1 0.00
270 48 0.04
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.35
Consensus pattern (254 bp):
ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAACT
CATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTAG
AGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
Found at i:7363145 original size:381 final size:381
Alignment explanation
Indices: 7362402--7363816 Score: 2202
Period size: 381 Copynumber: 3.7 Consensus size: 381
7362392 TTTTAAATTG
* * * **
7362402 ACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTCATT-TTTGTTTTTCAAAATCAACTCATATTG
1 ACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTG
* *
7362465 TTAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAATCAAC
65 CTAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAAC
* *
7362530 TCACATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGTTA
130 TCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTA
7362595 GAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAACTCA
195 GAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAACTCA
7362660 TATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTAGAG
260 TATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTAGAG
7362725 GTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
325 GTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
7362782 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
7362847 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAACT
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAACT
7362912 CATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTAG
131 CATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTAG
7362977 AGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAACTCAT
196 AGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAACTCAT
7363042 ATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTAGAGG
261 ATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTAGAGG
7363107 TGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
326 TGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
7363163 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
7363228 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAACT
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAACT
7363293 CATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTAG
131 CATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTAG
7363358 AGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAACTCAT
196 AGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAACTCAT
7363423 ATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTAGAGG
261 ATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTAGAGG
*
7363488 TGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGTTT-TCAA-AATTCA
326 TGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAA-TCA
* ** * **
7363543 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACTTTGAGGTATTTTTAACTTTTGTTTTCA
1 ACTCATATTGCGAG--A-G-G-TG-G-GTTGA-AC-CTTTTA---ATTCCT-AC---T-TTTTCA
* * * * ** * *
7363608 AAATCAACTTATATTGCGAGAAGTGAGTTGAGCCTCGGGGCATGCTGAGG-----T--ATTTCTA
49 AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCT-
** * * * **
7363666 GTTT-T--A-AATTGACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTCATT-TTTGTTTTTCAA
113 GTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTCCTACTTTTTCAA
* *
7363725 AATCAACTCATATTGTTAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGT
177 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGT
7363790 TT-TCAA-AATTCAACTCATATTGCGAGA
242 TTGTCAAGAA-TCAACTCATATTGCGAGA
7363817 AATGAGTTGA
Statistics
Matches: 979, Mismatches: 33, Indels: 41
0.93 0.03 0.04
Matches are distributed among these distances:
379 2 0.00
380 52 0.05
381 708 0.72
382 1 0.00
383 1 0.00
384 3 0.00
385 24 0.02
386 77 0.08
387 36 0.04
388 3 0.00
389 5 0.01
390 7 0.01
391 4 0.00
392 5 0.01
393 2 0.00
396 1 0.00
397 48 0.05
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.35
Consensus pattern (381 bp):
ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAACT
CATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTAG
AGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCAACTCAT
ATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGCTAGAGG
TGAGTTGAGCCTCAGGATACGATGAGGTAATTTAAATTTCTGTTTGTCAAGAATCA
Found at i:7363586 original size:72 final size:71
Alignment explanation
Indices: 7363459--7363643 Score: 255
Period size: 72 Copynumber: 2.6 Consensus size: 71
7363449 AATTCCTACT
* * * *
7363459 TTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAA
1 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGATGAGGTAATTTCAA
7363524 -TTTCTG
66 CTTT-TG
* ** * *
7363530 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACTTTGAGGTATTTTTA
1 TTTTCAAAA-TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGATGAGGTAATTTCA
7363595 ACTTTTG
65 ACTTTTG
*
7363602 TTTTCAAAATCAACTTATATTGCGAGAAGTGAGTTGAGCCTC
1 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC
7363644 GGGGCATGCT
Statistics
Matches: 101, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
71 40 0.40
72 58 0.57
73 3 0.03
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (71 bp):
TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGATGAGGTAATTTCAA
CTTTTG
Found at i:7363847 original size:72 final size:72
Alignment explanation
Indices: 7363718--7363869 Score: 182
Period size: 72 Copynumber: 2.1 Consensus size: 72
7363708 TCATTTTTGT
** ** * *
7363718 TTTTCAAAATCAACTCATATTGTTAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAA
1 TTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATACGATAAGGTAATTTCAA
**
7363783 TTTCTG-
66 AATCTGC
* *
7363789 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATTC-ATTAAGGTATTTTC
1 TTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATACGA-TAAGGTAATTTC
7363853 AAAATCTGC
64 AAAATCTGC
7363862 TTTTCAAA
1 TTTTCAAA
7363870 TTAAGTTTCA
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
71 10 0.15
72 50 0.74
73 8 0.12
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (72 bp):
TTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATACGATAAGGTAATTTCAA
AATCTGC
Found at i:7364561 original size:17 final size:17
Alignment explanation
Indices: 7364539--7364572 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7364529 ATTTTGGGCC
7364539 CTAAACCAAACAACCCA
1 CTAAACCAAACAACCCA
7364556 CTAAACCAAACAACCCA
1 CTAAACCAAACAACCCA
7364573 ATAACCCGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.41, G:0.00, T:0.06
Consensus pattern (17 bp):
CTAAACCAAACAACCCA
Found at i:7364984 original size:3 final size:3
Alignment explanation
Indices: 7364976--7365009 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
7364966 TGTATTTTCA
*
7364976 TAT TAT TAT TAT TAT TAT TAT ATAT TTT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
7365010 ATGCATATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:7365006 original size:13 final size:13
Alignment explanation
Indices: 7364976--7365011 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
7364966 TGTATTTTCA
7364976 TATTATTAT-TAT
1 TATTATTATATAT
7364988 TATTATTATATAT
1 TATTATTATATAT
*
7365001 TTTTATTATAT
1 TATTATTATAT
7365012 GCATATACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 9 0.41
13 13 0.59
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TATTATTATATAT
Found at i:7367152 original size:7 final size:7
Alignment explanation
Indices: 7367140--7367165 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
7367130 TTTTAATTTC
7367140 ATATTGA
1 ATATTGA
7367147 ATATTGA
1 ATATTGA
7367154 ATATTGA
1 ATATTGA
7367161 ATATT
1 ATATT
7367166 TAAAATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (7 bp):
ATATTGA
Found at i:7367756 original size:27 final size:25
Alignment explanation
Indices: 7367707--7367756 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
7367697 TAAGACAACA
* *
7367707 TATTATAATATATTTTAACTTTAAT
1 TATTATAATATATTATAAATTTAAT
7367732 TATTATAATATATATAATAAATTTA
1 TATTATAATATAT-T-ATAAATTTA
7367757 CACATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 13 0.62
26 1 0.05
27 7 0.33
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
TATTATAATATATTATAAATTTAAT
Found at i:7368621 original size:30 final size:31
Alignment explanation
Indices: 7368562--7368631 Score: 97
Period size: 33 Copynumber: 2.2 Consensus size: 31
7368552 AACTAAAAAA
7368562 AGTTTAAGTACCAACTTAAGAAAAAAATGGTAT
1 AGTTTAAGTACCAACTTAAG--AAAAATGGTAT
*
7368595 AGTTTAAGTACCAATTTAAG-AAAATGGTAT
1 AGTTTAAGTACCAACTTAAGAAAAATGGTAT
*
7368625 AATTTAA
1 AGTTTAA
7368632 AAACTATTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
30 16 0.46
33 19 0.54
ACGTcount: A:0.47, C:0.07, G:0.14, T:0.31
Consensus pattern (31 bp):
AGTTTAAGTACCAACTTAAGAAAAATGGTAT
Found at i:7372570 original size:23 final size:23
Alignment explanation
Indices: 7372540--7372585 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
7372530 GGGTTTTTGG
*
7372540 AAAAAAATAGGGTTTAAGGTTTT
1 AAAAAAATAAGGTTTAAGGTTTT
*
7372563 AAAAAAATAAGGTTTAGGGTTTT
1 AAAAAAATAAGGTTTAAGGTTTT
7372586 TTTAATAGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (23 bp):
AAAAAAATAAGGTTTAAGGTTTT
Found at i:7372588 original size:26 final size:26
Alignment explanation
Indices: 7372527--7372590 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 26
7372517 TGGTTTAGGG
** *
7372527 TTAGGGTTTTTGGAAAAAAATAGGGT
1 TTAGGGTTTTTTTAAAAAAATAAGGT
*
7372553 TTAAGG---TTTTAAAAAAATAAGGT
1 TTAGGGTTTTTTTAAAAAAATAAGGT
7372576 TTAGGGTTTTTTTAA
1 TTAGGGTTTTTTTAA
7372591 TAGGTAAGTG
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
23 19 0.63
26 11 0.37
ACGTcount: A:0.36, C:0.00, G:0.23, T:0.41
Consensus pattern (26 bp):
TTAGGGTTTTTTTAAAAAAATAAGGT
Found at i:7373094 original size:25 final size:25
Alignment explanation
Indices: 7373061--7373132 Score: 117
Period size: 25 Copynumber: 2.9 Consensus size: 25
7373051 TTACAGCAAG
7373061 AAAAATTGAAGAAGTTCAGAAGAAT
1 AAAAATTGAAGAAGTTCAGAAGAAT
*
7373086 AAAAATTGAAGAAGTTTAGAAGAAT
1 AAAAATTGAAGAAGTTCAGAAGAAT
* *
7373111 AAAAATTGAAGAAATTGAGAAG
1 AAAAATTGAAGAAGTTCAGAAG
7373133 GTATAAGTTG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.57, C:0.01, G:0.21, T:0.21
Consensus pattern (25 bp):
AAAAATTGAAGAAGTTCAGAAGAAT
Found at i:7375904 original size:30 final size:30
Alignment explanation
Indices: 7375868--7375966 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
7375858 CTAGCCTTTG
7375868 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
7375898 CCACCACCTACTCCACTAGTCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
7375928 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
7375958 CCACCACCA
1 CCACCACCA
7375967 CTTATACCTA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.25, C:0.49, G:0.06, T:0.19
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:7376469 original size:22 final size:23
Alignment explanation
Indices: 7376423--7376482 Score: 63
Period size: 22 Copynumber: 2.6 Consensus size: 23
7376413 ATTTTTTTGT
7376423 TATTATTATATT-TTTTAATATTA
1 TATTATTATATTCTTTT-ATATTA
7376446 TATTATATATATTCTTTT-TA-TA
1 TATTAT-TATATTCTTTTATATTA
*
7376468 TATTAGGTATATTCT
1 TATTA-TTATATTCT
7376483 AAATTCTATA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
22 15 0.45
23 8 0.24
24 6 0.18
25 4 0.12
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (23 bp):
TATTATTATATTCTTTTATATTA
Found at i:7376526 original size:25 final size:26
Alignment explanation
Indices: 7376488--7376560 Score: 87
Period size: 25 Copynumber: 2.8 Consensus size: 26
7376478 ATTCTAAATT
7376488 CTATATTACGTGTATATATATATT-ATA
1 CTATATTA--TGTATATATATATTAATA
* *
7376515 CTATTTTATGTATATATCT-TTAATA
1 CTATATTATGTATATATATATTAATA
*
7376540 CTATATTATTTATATATATAT
1 CTATATTATGTATATATATAT
7376561 ATTTTTCTAC
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
24 2 0.05
25 29 0.74
26 1 0.03
27 7 0.18
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.53
Consensus pattern (26 bp):
CTATATTATGTATATATATATTAATA
Found at i:7376563 original size:14 final size:14
Alignment explanation
Indices: 7376500--7376564 Score: 55
Period size: 14 Copynumber: 4.6 Consensus size: 14
7376490 ATATTACGTG
*
7376500 TATATATATAT-TA
1 TATATATTTATATA
*
7376513 TACTAT-TTTATGTA
1 TA-TATATTTATATA
*
7376527 TATATCTTTA-ATA
1 TATATATTTATATA
7376540 CTATATTATTTATATA
1 -TATA-TATTTATATA
7376556 TATATATTT
1 TATATATTT
7376565 TTCTACATGT
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
13 11 0.26
14 20 0.47
15 9 0.21
16 3 0.07
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.57
Consensus pattern (14 bp):
TATATATTTATATA
Found at i:7376630 original size:25 final size:24
Alignment explanation
Indices: 7376580--7376642 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
7376570 CATGTTATCT
*
7376580 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAACTATATTATG
7376606 TATGTATTTTTTACACTATATTATG
1 TATGTATTTTTTA-ACTATATTATG
**
7376631 TACATATTTTTT
1 TATGTATTTTTT
7376643 TTATATCTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.15
25 21 0.64
26 7 0.21
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (24 bp):
TATGTATTTTTTAACTATATTATG
Found at i:7388978 original size:13 final size:13
Alignment explanation
Indices: 7388934--7388978 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
7388924 CGCCGAGGTA
7388934 TTTTTAATTTCTG
1 TTTTTAATTTCTG
*
7388947 TTTGTCAATTTCTG
1 TTT-TTAATTTCTG
*
7388961 CTTTTAATTTCTG
1 TTTTTAATTTCTG
7388974 TTTTT
1 TTTTT
7388979 CAAAAATCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.13, C:0.11, G:0.09, T:0.67
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:7389447 original size:99 final size:99
Alignment explanation
Indices: 7388882--7389439 Score: 947
Period size: 99 Copynumber: 5.6 Consensus size: 99
7388872 TGCTTTTTAA
* * * ** * * *
7388882 AAATCAACTCATATTGGGAGAGGTAAGCTGAGCCTGGGGGCACGCCGAGGTATTTTTAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCATGCTGAGGTATTTTCAATTTCTG
* * ** * *
7388947 TTTGTCAATTTCTG-CTTTTAATTTCTGTTTTTC
66 TTTTTCAATTTTTGCCTTACAAATTCTGCTTTTC
7388980 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCATGCTGAGGTATTTTCAATTTC
1 --AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCATGCTGAGGTATTTTCAATTTC
7389045 TGTTTTTCAATTTTTGCCTTACAAATTCTGCTTTTC
64 TGTTTTTCAATTTTTGCCTTACAAATTCTGCTTTTC
7389081 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCATGCTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCATGCTGAGGTATTTTCAATTTCTG
7389146 TTTTTCAATTTTTGCCTTACAAATTCTGCTTTTC
66 TTTTTCAATTTTTGCCTTACAAATTCTGCTTTTC
7389180 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCATGCTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCATGCTGAGGTATTTTCAATTTCTG
7389245 TTTTTCAATTTTTGCCTTACAAATTCTGCTTTTC
66 TTTTTCAATTTTTGCCTTACAAATTCTGCTTTTC
7389279 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCATGCTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCATGCTGAGGTATTTTCAATTTCTG
7389344 TTTTTCAATTTTTGCCTTACAAATTCTGCTTTTC
66 TTTTTCAATTTTTGCCTTACAAATTCTGCTTTTC
* *
7389378 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCATGCTGAGGTATTTTCAATTT
7389440 TCATTTTTTT
Statistics
Matches: 441, Mismatches: 16, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
99 357 0.81
100 69 0.16
101 15 0.03
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (99 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCATGCTGAGGTATTTTCAATTTCTG
TTTTTCAATTTTTGCCTTACAAATTCTGCTTTTC
Found at i:7389569 original size:73 final size:73
Alignment explanation
Indices: 7389465--7390208 Score: 897
Period size: 73 Copynumber: 10.0 Consensus size: 73
7389455 ATGTTTCTAA
* * * * * *
7389465 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTAAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
7389530 TGTTTGTC
66 TGTTTGTC
* ** *
7389538 AAAACTCAACTCATATTGTAAGAGGTAAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
*
7389603 TGTTTTTC
66 TGTTTGTC
* * * * * *
7389611 AAAAAAATCAACTCATATTGCGATAGGTGAATTGAGCCTCAGGACACGCTGAGGCAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
*
7389676 TTTGTTTGTC
64 TCTGTTTGTC
7389686 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
*
7389751 TGTCTT-TAAAAA
66 TGT-TTGT----C
* * * *
7389763 AAAAAGCAGCTCATATTACGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
*
7389828 TGTTTTTC
66 TGTTTGTC
* * * *
7389836 AAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
*
7389899 TTTGTTTGTC
64 TCTGTTTGTC
7389909 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
*
7389974 TGTTTTTC
66 TGTTTGTC
* * * *
7389982 AAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
*
7390045 TTTGTTTGTC
64 TCTGTTTGTC
7390055 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
7390120 TGTCTT-TC
66 TGT-TTGTC
* * * * ** *
7390128 AAAAAAAATCAGCTCATATTGCGAGTGGTAAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCA
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-AGACACGTTGAGGTATTTTCA
* *
7390193 AATTCTGTTTTTC
61 ATTTCTGTTTGTC
7390206 AAA
1 AAA
7390209 TTTTGTTTTT
Statistics
Matches: 579, Mismatches: 69, Indels: 44
0.84 0.10 0.06
Matches are distributed among these distances:
71 78 0.13
73 226 0.39
74 4 0.01
75 140 0.24
76 35 0.06
77 69 0.12
78 27 0.05
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
TGTTTGTC
Found at i:7389925 original size:371 final size:371
Alignment explanation
Indices: 7389445--7390208 Score: 1221
Period size: 371 Copynumber: 2.1 Consensus size: 371
7389435 AATTTTCATT
* * * *
7389445 TTTTTAATTTATGTTTCT-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCA-GACA
* *
7389509 CGCTAAGGTAATTTCAATTTTTGTTTGTCAAAACTCAACTCATATTGTAAGAGGTAAGTTGAGCC
65 CGCTAAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTAAGTTGAGCC
7389574 TCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGT
130 TCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGT
*
7389639 GAATTGAGCCTCAGGACACGCTGAGGCAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTG
195 GAATTGAACCTCA--ACACGCTGAGGCAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTG
7389704 CGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTAAAAAAAAAAG
258 CGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTT-AAAAAAAAAG
* * *
7389769 CAGCTCATATTACGAGAGGTGAGTTGAACC-TCA-AGACACGTTGAGGTA
322 CAGCTCATATTACGAGAGGTAAGTTGAACCTTCACACACACGCTGAGGTA
* * *
7389817 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCA-AGAC
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGACAC
* * *
7389881 GCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
66 GCTAAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTAAGTTGAGCCT
7389946 CAAGACACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTG
131 CAAGACACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTG
* * *
7390011 AGTTGAACCTCAAGACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGA
196 AATTGAACCTCAACACGCTGAGGCAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGA
* *
7390076 GAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAATCAGC
261 GAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTAAAAAAAAAGCAGC
* * * * *
7390141 TCATATTGCGAGTGGTAAGTTGAGCCTTGACTCACACGCTGAGGTA
326 TCATATTACGAGAGGTAAGTTGAACCTTCACACACACGCTGAGGTA
*
7390187 TTTTCAAATTCTGTTTTTCAAA
1 TTTTCAATTTCTGTTTTTCAAA
7390209 TTTTGTTTTT
Statistics
Matches: 362, Mismatches: 27, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
368 34 0.09
369 104 0.29
370 33 0.09
371 138 0.38
372 15 0.04
373 38 0.10
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (371 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGACAC
GCTAAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTAAGTTGAGCCT
CAAGACACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTG
AATTGAACCTCAACACGCTGAGGCAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGA
GAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTAAAAAAAAAGCAGC
TCATATTACGAGAGGTAAGTTGAACCTTCACACACACGCTGAGGTA
Found at i:7390223 original size:15 final size:14
Alignment explanation
Indices: 7390187--7390219 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
7390177 CGCTGAGGTA
7390187 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
7390201 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
7390215 TTTTC
1 TTTTC
7390220 CAAAAAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:7390293 original size:89 final size:91
Alignment explanation
Indices: 7390109--7390376 Score: 303
Period size: 90 Copynumber: 2.9 Consensus size: 91
7390099 CGTTGAGGTA
* * * * * * *
7390109 TTTTCAATTTCTGTCTT-TCAAAAAAAATCAGCTCATATTGCGAGTGGTAAGTTGAGCCT-TGAC
1 TTTTCAATTTATGT-TTGTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAGA-
*
7390172 TCACACGCTGAGGTATTTTCAAATTC-TGT
63 -CACACGCTGAGGTATTTTCAATTTCTTGT
* * *
7390201 TTTTCAAATTT-TGTTTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAG-GA
1 TTTTC-AATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAGACA
* *
7390264 CACGCTGAGATATTTTCAATTTCTTTT
65 CACGCTGAGGTATTTTCAATTTCTTGT
* *
7390291 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAGA-CA
*
7390356 CACGCCGAGGTATTTTCAATT
65 CACGCTGAGGTATTTTCAATT
7390377 GATTTTTATT
Statistics
Matches: 151, Mismatches: 18, Indels: 14
0.83 0.10 0.08
Matches are distributed among these distances:
89 27 0.18
90 53 0.35
91 35 0.23
92 31 0.21
93 5 0.03
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.37
Consensus pattern (91 bp):
TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAGACAC
ACGCTGAGGTATTTTCAATTTCTTGT
Found at i:7390333 original size:90 final size:87
Alignment explanation
Indices: 7390109--7390588 Score: 349
Period size: 87 Copynumber: 5.2 Consensus size: 87
7390099 CGTTGAGGTA
* * * * *
7390109 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGTGGTAAGTTGAGCCTTGACTC
1 TTTTCAATTT-TGT-TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-GC
*
7390174 ACACGCTGAGGTATTTTCAAATTCTGT
61 ACACGCTGAGGTATTTTCAATTTCTGT
* * * *
7390201 TTTTCAAATTTTGTTTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAGGACA
1 TTTTC-AATTTTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACA
* *
7390266 CGCTGAGATATTTTCAATTTCTTTT
64 CGCTGAGGTATTTTCAATTTC-TGT
7390291 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTT-TGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--CA
* *
7390356 CACGCCGAGGTATTTTCAATTGAT-TTT
62 CACGCTGAGGTATTTTCAATT--TCTGT
** * *
7390383 TATTTTTATTTTTTTTTCAATTTATGCTTTGCAAAAATCAACTCATATTACGAGAGGTGAGTTGA
1 T-TTTCAATTTTGTTTTC-A---A--------AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* ** * **
7390448 GCCTCGGGTCACATACCGAGGTATTTTCAAAATCTGT
53 GCCTC-AG-CACACGCTGAGGTATTTTCAATTTCTGT
* * ** *
7390485 TTTACAAATTTTGTTTT---AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCAC
1 TTTTC-AATTTTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACAC
*
7390547 GTGCTGAGCTATTTTCAATTTCTGT
65 --GCTGAGGTATTTTCAATTTCTGT
7390572 TTTT-AATGTTTAGTTTT
1 TTTTCAAT-TTT-GTTTT
7390589 AAAGAGTCAA
Statistics
Matches: 316, Mismatches: 43, Indels: 63
0.75 0.10 0.15
Matches are distributed among these distances:
85 6 0.02
86 5 0.02
87 61 0.19
89 30 0.09
90 52 0.16
91 34 0.11
92 40 0.13
93 13 0.04
94 1 0.00
95 1 0.00
101 3 0.01
102 12 0.04
103 57 0.18
104 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (87 bp):
TTTTCAATTTTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACG
CTGAGGTATTTTCAATTTCTGT
Found at i:7390460 original size:103 final size:104
Alignment explanation
Indices: 7390287--7390477 Score: 305
Period size: 103 Copynumber: 1.8 Consensus size: 104
7390277 TTTCAATTTC
*
7390287 TTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
1 TTTTTTTTCAATTTATGTTTGTC-AAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAG
*
7390352 ATCACACGCCGAGGTATTTTCAATTGATTTTTATTTTTAT
65 ATCACACACCGAGGTATTTTCAATTGATTTTTATTTTTAT
*
7390392 TTTTTTTTCAATTTATGCTTTG-C-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGG
1 TTTTTTTTCAATTTATG-TTTGTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAG
* *
7390455 GTCACATACCGAGGTATTTTCAA
65 ATCACACACCGAGGTATTTTCAA
7390478 AATCTGTTTT
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
103 58 0.73
105 18 0.22
106 4 0.05
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (104 bp):
TTTTTTTTCAATTTATGTTTGTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGA
TCACACACCGAGGTATTTTCAATTGATTTTTATTTTTAT
Found at i:7390561 original size:87 final size:87
Alignment explanation
Indices: 7390415--7390613 Score: 231
Period size: 87 Copynumber: 2.3 Consensus size: 87
7390405 TATGCTTTGC
* * * *
7390415 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGCTATTTTCAAAA
7390480 TCTGTTTTACAAAT-TTT-GTTTT
66 TCTGTTTT--AAATGTTTAGTTTT
* * * * **
7390502 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGCTATTTTCAAAA
*
7390567 TCTGTTTTTAATGTTTAGTTTT
66 TCTGTTTTAAATGTTTAGTTTT
* * *
7390589 AAAGAGTCAATTCATATTGCAAGAA
1 AAA-AATCAACTCATATTGCGAGAA
7390614 ATTAGTTAAG
Statistics
Matches: 95, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
85 3 0.03
86 3 0.03
87 71 0.75
88 18 0.19
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.36
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGCTATTTTCAAAA
TCTGTTTTAAATGTTTAGTTTT
Found at i:7391702 original size:18 final size:18
Alignment explanation
Indices: 7391679--7391730 Score: 77
Period size: 18 Copynumber: 2.8 Consensus size: 18
7391669 CAAAAATCTT
7391679 GGTTTTTTTGGGGGGTTA
1 GGTTTTTTTGGGGGGTTA
**
7391697 GGTTTTTTTTTGGGGTTA
1 GGTTTTTTTGGGGGGTTA
7391715 GGTTTTTTTAGGGGGG
1 GGTTTTTTT-GGGGGG
7391731 CTTAATGGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
18 25 0.86
19 4 0.14
ACGTcount: A:0.06, C:0.00, G:0.42, T:0.52
Consensus pattern (18 bp):
GGTTTTTTTGGGGGGTTA
Found at i:7393704 original size:22 final size:24
Alignment explanation
Indices: 7393645--7393712 Score: 68
Period size: 25 Copynumber: 2.9 Consensus size: 24
7393635 AGATATAAAA
* *
7393645 AAAAATATGTACATAATATAGTGT
1 AAAAATATATACATAATATAATGT
*
7393669 AAAAAATACATACATAATATAAT-T
1 -AAAAATATATACATAATATAATGT
* *
7393693 -AAAATATTTACATAAGATAA
1 AAAAATATATACATAATATAA
7393713 CATGTAGAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
22 17 0.46
24 1 0.03
25 19 0.51
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (24 bp):
AAAAATATATACATAATATAATGT
Found at i:7394408 original size:30 final size:30
Alignment explanation
Indices: 7394340--7394408 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
7394330 TAGGTATAAG
*
7394340 TGGTGGTGAAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
7394370 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
7394400 TGGTGGTGG
1 TGGTGGTGG
7394409 CAAAGGCTAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.16, C:0.06, G:0.51, T:0.28
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:7394960 original size:21 final size:21
Alignment explanation
Indices: 7394934--7394975 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
7394924 GATATCATCG
7394934 ATTAGCTCCACTGCAACTTCA
1 ATTAGCTCCACTGCAACTTCA
* *
7394955 ATTAGCTTCACTGTAACTTCA
1 ATTAGCTCCACTGCAACTTCA
7394976 GGGATATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.33
Consensus pattern (21 bp):
ATTAGCTCCACTGCAACTTCA
Found at i:7395467 original size:13 final size:14
Alignment explanation
Indices: 7395435--7395467 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
7395425 TGATTTTTTG
7395435 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
7395449 GAAAAACAGAATTT
1 GAAAAACAAAATTT
7395463 GAAAA
1 GAAAA
7395468 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:7395467 original size:182 final size:176
Alignment explanation
Indices: 7395090--7395632 Score: 555
Period size: 182 Copynumber: 3.0 Consensus size: 176
7395080 ACTAAACATT
* * * * *
7395090 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGAATTTGAAAATACCTCAGCATGTGA-TCAAGGCTCAACTCACCTCTCGCAATATGAG
* * ** * *
7395155 TTGA--TTTTT-AAAATAAAATTTGTAAAACAGATTTTGAAAATACCTC-GATATGTGACCCGAG
65 TTGATTTTTTTGAAAACAAAA-TTGAAAAACAGAAATTGAAAATACCTCAGCT-TGT--CCTGAG
* *
7395216 GCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTGCAAAGCATAAATTG
126 GCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTGAAAAACATAAATTG
* * * *
7395266 AAAAA-AAAATCAATTGAAAATACCTCCGCATGTGATCTGAGGCTCAACTCACCTCTCGTAATAT
1 AAAAACAGAAT---TTGAAAATACCTCAGCATGTGATC-AAGGCTCAACTCACCTCTCGCAATAT
* *
7395330 GAGTTGATTTTTTTGACAAACATAAATTGAAAAAAAAAGAAATTGAAAATATCTCAGCTTGTCCT
62 GAGTTGATTTTTTTGA-AAACA-AAATTG--AAAAACAGAAATTGAAAATACCTCAGCTTGTCCT
* *
7395395 GAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAAACA-AAATTTG
123 GAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTT-GAAAAACATAAA-TTG
* *
7395450 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAG
1 AAAAACAGAATTTGAAAATACCTCAGCATGTGA-TCAAGGCTCAACTCACCTCTCGCAATATGAG
* * * * * *
7395515 CTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGC--GTCTTGAGGT
65 TTGATTTTTTTGAAA-ACA-AAATTGAAAAACAGAAATTGAAAATACCTCAGCTTGTCCTGAGGC
* * *
7395578 TCAACTCACCTCTCGTAATATGAGCTGATTTTTTTTGAAAGACAGAAATTG
128 TCAACTCACCTCTCGTAATATGAGTTGA--TTTTTTGAAAAACATAAATTG
7395629 AAAA
1 AAAA
7395633 TACCTCAACG
Statistics
Matches: 306, Mismatches: 40, Indels: 39
0.79 0.10 0.10
Matches are distributed among these distances:
175 3 0.01
176 5 0.02
177 1 0.00
178 82 0.27
179 14 0.05
180 36 0.12
181 3 0.01
182 107 0.35
183 13 0.04
184 36 0.12
185 6 0.02
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.28
Consensus pattern (176 bp):
AAAAACAGAATTTGAAAATACCTCAGCATGTGATCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTGAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGCTTGTCCTGAGGCTCA
ACTCACCTCTCGTAATATGAGTTGATTTTTTGAAAAACATAAATTG
Found at i:7395513 original size:273 final size:265
Alignment explanation
Indices: 7395127--7395632 Score: 626
Period size: 273 Copynumber: 1.9 Consensus size: 265
7395117 ACGTGAGCCA
* * * *
7395127 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAATAAAATTTGTAAAACAGATTTTGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAACAAAATTTGAAAAACAGAATTTGA
* * * * *
7395192 AAATACCTCGATATGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTGCAAA
66 AAATACCTCGACATGTGACCCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTG-AAA
* * * * *
7395256 -GCATAAATTGAAAAAAAAATCAATTGAAAATACCTCCGCATGTGATCTGAGGCTCAACTCACCT
130 CACAGAAATTGAAAAAAAAA--AATGGAAAACACCTCAGC--GT-AT-TGAGGCTCAACTCACCT
* *
7395320 CTCGTAATATGAGTTGA-TTTTTTTGACAA-ACATAAATTGAAAAAAAAAGAAATTGAAAATATC
189 CTCGTAATATGAGCTGATTTTTTTTGA-AAGACAGAAATTGAAAAAAAAAGAAATTGAAAATATC
7395383 TCAGCTTGTCCTG
253 TCAGCTTGTCCTG
*
7395396 AGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT---AAAACAAAATTTGAAAAACAGAAT
* **
7395461 TTGAAAATACCTC-AGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTT
62 TTGAAAATACCTCGA-CATGTGACCCAAGGCTCAACTCACCACTCGCAATATGAGCTGA-TTTTT
* * * * *
7395525 TGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTC
125 TGAAACACAGAAATTGAAAAAAAAAAATGGAAAACACCTCAGCGTATTGAGGCTCAACTCACCTC
7395590 TCGTAATATGAGCTGATTTTTTTTGAAAGACAGAAATTGAAAA
190 TCGTAATATGAGCTGATTTTTTTTGAAAGACAGAAATTGAAAA
7395633 TACCTCAACG
Statistics
Matches: 202, Mismatches: 25, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
269 64 0.32
270 28 0.14
271 2 0.01
272 1 0.00
273 84 0.42
274 3 0.01
275 20 0.10
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (265 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAACAAAATTTGAAAAACAGAATTTGA
AAATACCTCGACATGTGACCCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTGAAAC
ACAGAAATTGAAAAAAAAAAATGGAAAACACCTCAGCGTATTGAGGCTCAACTCACCTCTCGTAA
TATGAGCTGATTTTTTTTGAAAGACAGAAATTGAAAAAAAAAGAAATTGAAAATATCTCAGCTTG
TCCTG
Found at i:7395524 original size:91 final size:89
Alignment explanation
Indices: 7395053--7395632 Score: 488
Period size: 91 Copynumber: 6.5 Consensus size: 89
7395043 TTAACTCATT
* * * *
7395053 TCTCGCAATATGAATTGACTCTTT--AAAAC-TAAACATT-AAAAACAGAAATTGAAAATAGCTC
1 TCTCGCAATATGAGTTGATTTTTTGAAAAACAT-AA-ATTGAAAAACAGAAATTGAAAATACCTC
* * * *
7395114 AGCACGTGAGCCAAGGCTCAACTCACT
64 AGCATGTGA-TCGAGGCTCAACTCACC
* * **
7395141 TCTCGCAATATGAGTTGA-TTTTT-AAAATA-A-AATTTGTAAAACAGATTTTGAAAATACCTC-
1 TCTCGCAATATGAGTTGATTTTTTGAAAA-ACATAAATTGAAAAACAGAAATTGAAAATACCTCA
* *
7395201 GATATGTGACCCGAGGCTCAACTCACC
65 G-CATGTGA-TCGAGGCTCAACTCACC
* * * * *
7395228 TCTCGTAATATGAGTTGA-TTTTTGCAAAGCATAAATTGAAAAAAAAATCAATTGAAAATACCTC
1 TCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTGAAAAACAGA--AATTGAAAATACCTC
*
7395292 CGCATGTGATCTGAGGCTCAACTCACC
64 AGCATGTGATC-GAGGCTCAACTCACC
* * * *
7395319 TCTCGTAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAAAAAAGAAATTGAAAATATCT
1 TCTCGCAATATGAGTTGA-TTTTTTGAAAAACATAAATTG--AAAAACAGAAATTGAAAATACCT
* ** *
7395384 CAGCTTGTCCT-GAGGCTGAACTCACC
63 CAGCATGTGATCGAGGCTCAACTCACC
*
7395410 TCTCGCAATATGAGTTGATTTTTTGGAAAAACA-AAATTTGAAAAACAGAATTTGAAAATACCTC
1 TCTCGCAATATGAGTTGATTTTTT-GAAAAACATAAA-TTGAAAAACAGAAATTGAAAATACCTC
* *
7395474 AGCGTGTGAGTCAAGGCTCAACTCACC
64 AGCATGTGA-TCGAGGCTCAACTCACC
* * * * * * *
7395501 ACTCGCAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCA
1 TCTCGCAATATGAGTTGA-TTTTTTGAAAAACATAAATTGAAAAACAGAAATTGAAAATACCTCA
* * *
7395566 GC--GT-CTTGAGGTTCAACTCACC
65 GCATGTGATCGAGGCTCAACTCACC
* * * *
7395588 TCTCGTAATATGAGCTGATTTTTTTTGAAAGACAGAAATTGAAAA
1 TCTCGCAATATGAGTTGA--TTTTTTGAAAAACATAAATTGAAAA
7395633 TACCTCAACG
Statistics
Matches: 411, Mismatches: 58, Indels: 46
0.80 0.11 0.09
Matches are distributed among these distances:
86 3 0.01
87 98 0.24
88 48 0.12
89 41 0.10
90 11 0.03
91 155 0.38
92 10 0.02
93 37 0.09
95 8 0.02
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (89 bp):
TCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTGAAAAACAGAAATTGAAAATACCTCAG
CATGTGATCGAGGCTCAACTCACC
Found at i:7395822 original size:75 final size:75
Alignment explanation
Indices: 7395538--7396142 Score: 724
Period size: 73 Copynumber: 8.3 Consensus size: 75
7395528 AACACAGAAA
* * * * * * *
7395538 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGTAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
7395601 GCTGATTTTTT
66 GTTGA-TTTTT
* *
7395612 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
7395677 GTTGA--TTT
66 GTTGATTTTT
* * * * *
7395685 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
7395748 GTTGATTTTT
66 GTTGATTTTT
* *
7395758 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCTCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
7395823 GATGATTTTTT
66 GTTGA-TTTTT
* * *
7395834 TTTAAAGAC----A--G-AAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
7395892 GTT--TATTT
66 GTTGATTTTT
* * * *
7395900 TTGACAAACAAAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
7395965 GTTGATTTTT
66 GTTGATTTTT
* *
7395975 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
7396040 GTTGA--GTT
66 GTTGATTTTT
* * * * *
7396048 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
7396113 GTTGATTCTT
66 GTTGATTTTT
* * *
7396123 TT-AGAAACATAAATTAAAAA
1 TTGAAAAACAAAAATTGAAAA
7396143 AACGAAAATT
Statistics
Matches: 458, Mismatches: 55, Indels: 36
0.83 0.10 0.07
Matches are distributed among these distances:
66 10 0.02
69 46 0.10
70 2 0.00
71 37 0.08
72 3 0.01
73 165 0.36
74 38 0.08
75 109 0.24
76 48 0.10
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.31
Consensus pattern (75 bp):
TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:7396024 original size:217 final size:216
Alignment explanation
Indices: 7395538--7396137 Score: 805
Period size: 217 Copynumber: 2.7 Consensus size: 216
7395528 AACACAGAAA
* * * *
7395538 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGT-AATATG
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTC-TCAATATG
* * *
7395600 AGCTGATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCT
65 AGATGATTTTTTTT--AA-A-AGACA-TG-AAATACCTCAACGTGTCTTGAGGCTCAACTCACTT
* *
7395665 CTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAAC
124 CTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCCTGAGGCTCAAC
7395730 TCACCTATCGCAATATGAGTTGATTTTT
189 TCACCTATCGCAATATGAGTTGATTTTT
*
7395758 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCTCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCTCAATATGA
*
7395823 GATGATTTTTTTTTAAAGACA-GAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAA
66 GATGATTTTTTTTAAAAGACATGAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAA
* *
7395887 TATGAGTTTATTTTTGACAAACAAAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACC
131 TATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTC-A-GCGTCCTGAGGCTCAACTCACC
7395952 TATCGCAATATGAGTTGATTTTT
194 TATCGCAATATGAGTTGATTTTT
*
7395975 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT-TGCAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCT-CAATATG
* * *** * * * *
7396039 AGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTC
65 AGATGATTTTTTTTAAA-AGACA-TGAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACTTCTC
* * *
7396104 GCAATATGAGTTGATTCTTTTAGAAACATAAATT
127 GCAATATGAGTTGATT-TTTGACAAACAAAAATT
7396138 AAAAAAACGA
Statistics
Matches: 340, Mismatches: 29, Indels: 20
0.87 0.07 0.05
Matches are distributed among these distances:
215 80 0.24
216 3 0.01
217 113 0.33
218 7 0.02
219 1 0.00
220 28 0.08
221 50 0.15
222 58 0.17
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (216 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCTCAATATGA
GATGATTTTTTTTAAAAGACATGAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAA
TATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCCTGAGGCTCAACTCACCTA
TCGCAATATGAGTTGATTTTT
Found at i:7396053 original size:148 final size:147
Alignment explanation
Indices: 7395538--7396142 Score: 730
Period size: 148 Copynumber: 4.1 Consensus size: 147
7395528 AACACAGAAA
* * * * * *
7395538 TTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGTAATATGAGC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
7395603 TGATTTTTTTTGA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
66 TGA--TTTTTTGACAA-ACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCT
7395667 CGCAATATGAGTTGA--TTT
128 CGCAATATGAGTTGATTTTT
* * * * *
7395685 TTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
7395750 TGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCT
66 TGA-TTTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
*
7395815 CAATATGAGATGATTTTT
130 CAATATGAGTTGATTTTT
** * * *
7395833 TT--TTAA-AGACA--G-AAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
7395892 GTTTA-TTTTTGACAAACAAAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTATC
64 GTTGATTTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTC
7395956 GCAATATGAGTTGATTTTT
129 GCAATATGAGTTGATTTTT
* *
7395975 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
7396040 GTTGA-GTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTC
64 GTTGATTTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTC
*
7396104 GCAATATGAGTTGATTCTT
129 GCAATATGAGTTGATTTTT
* * *
7396123 TT-AGAAACATAAATTAAAAA
1 TTGAAAAACAGAAATTGAAAA
7396143 AACGAAAATT
Statistics
Matches: 403, Mismatches: 44, Indels: 22
0.86 0.09 0.05
Matches are distributed among these distances:
142 81 0.20
143 2 0.00
144 37 0.09
145 7 0.02
146 70 0.17
147 77 0.19
148 129 0.32
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.31
Consensus pattern (147 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTT
Found at i:7396355 original size:13 final size:13
Alignment explanation
Indices: 7396312--7396358 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
7396302 TGGATTTTTG
7396312 AAAAATAGAAATT
1 AAAAATAGAAATT
* *
7396325 ACAAGTAGAAATT
1 AAAAATAGAAATT
*
7396338 GAAAAACAGAAATT
1 -AAAAATAGAAATT
7396352 AAAAATA
1 AAAAATA
7396359 CCTCGGCATG
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
13 17 0.63
14 10 0.37
ACGTcount: A:0.66, C:0.04, G:0.11, T:0.19
Consensus pattern (13 bp):
AAAAATAGAAATT
Found at i:7396377 original size:100 final size:101
Alignment explanation
Indices: 7396133--7396424 Score: 376
Period size: 100 Copynumber: 2.9 Consensus size: 101
7396123 TTAGAAACAT
* *
7396133 AAATTAAAAAA-ACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTCGCAA
1 AAATTAAAAAACA-G-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAA
* * **
7396197 TATGAGTTGA--TTTGAAAAGCAGAATTTGTAAGGCAA
64 TATGAGTTGATTTTTGAAAAGTAGAAATTACAAGGCAA
7396233 AAATTAAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
1 AAATTAAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
* * * *
7396298 TGAGTGGATTTTTGAAAAATAGAAATTACAA-GTAG
66 TGAGTTGATTTTTGAAAAGTAGAAATTACAAGGCAA
* * * * * * *
7396333 AAATTGAAAAACAGAAATTAAAAATACCTCGGCATGCCCCGAGGCTCAGCTCACCTCTTGCAATA
1 AAATTAAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
*
7396398 TGAGTTGATTTTTGAAAAGTATAAATT
66 TGAGTTGATTTTTGAAAAGTAGAAATT
7396425 GAAAAAAAGG
Statistics
Matches: 169, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
99 56 0.33
100 96 0.57
101 17 0.10
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (101 bp):
AAATTAAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTGAAAAGTAGAAATTACAAGGCAA
Found at i:7396488 original size:90 final size:87
Alignment explanation
Indices: 7396327--7396500 Score: 231
Period size: 90 Copynumber: 2.0 Consensus size: 87
7396317 TAGAAATTAC
* * * * *
7396327 AAGTAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCATGCCCCGAGGCTCAGCTCACCTCTT
1 AAGTAGAAATTGAAAAAAAGAAATTAAAAATACCTCGGCATGACCCGAGGCCCAACTCACCTCTC
7396392 GCAATATGAGTTGATTTTTGAA
66 GCAATATGAGTTGATTTTTGAA
* * ** *
7396414 AAGTATAAATTGAAAAAAAGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCT
1 AAGTAGAAATTGAAAAAAA-GAAATTAAAAATACCTC-G-GCATGACCCGAGGCCCAACTCACCT
7396479 CTCGCAATATGAGTTGATTTTT
63 CTCGCAATATGAGTTGATTTTT
7396501 TTGAAAGACA
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
87 17 0.23
88 16 0.22
89 1 0.01
90 40 0.54
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (87 bp):
AAGTAGAAATTGAAAAAAAGAAATTAAAAATACCTCGGCATGACCCGAGGCCCAACTCACCTCTC
GCAATATGAGTTGATTTTTGAA
Found at i:7407610 original size:16 final size:15
Alignment explanation
Indices: 7407588--7407629 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
7407578 TATATATGCA
*
7407588 TATAATAAAAGTATG
1 TATAATAAAAGTATC
7407603 TAATAATAATAA-TATC
1 T-ATAATAA-AAGTATC
7407619 TATAATAAAAG
1 TATAATAAAAG
7407630 AAAATATTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
14 2 0.09
15 8 0.35
16 11 0.48
17 2 0.09
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.33
Consensus pattern (15 bp):
TATAATAAAAGTATC
Found at i:7407947 original size:11 final size:11
Alignment explanation
Indices: 7407920--7407962 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
7407910 ATGGCATTAA
*
7407920 AAAATATATAC
1 AAAATATATAT
*
7407931 ATAATATATAT
1 AAAATATATAT
*
7407942 AAAATACATAT
1 AAAATATATAT
*
7407953 AATATATATA
1 AAAATATATA
7407963 CGTATTAGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (11 bp):
AAAATATATAT
Found at i:7408503 original size:11 final size:12
Alignment explanation
Indices: 7408489--7408523 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
7408479 AGAAAAAAAA
7408489 AAGAGAG-AGGG
1 AAGAGAGAAGGG
7408500 AAGAGAGAAGGG
1 AAGAGAGAAGGG
7408512 -AGAGAGAAGGG
1 AAGAGAGAAGGG
7408523 A
1 A
7408524 GGGGGGAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 18 0.82
12 4 0.18
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (12 bp):
AAGAGAGAAGGG
Found at i:7408669 original size:14 final size:14
Alignment explanation
Indices: 7408623--7408674 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
7408613 GGAAAAGGTA
*
7408623 TTTTT-TTATATTT
1 TTTTTATTATATAT
7408636 GTTTTGTATT-TATAT
1 -TTTT-TATTATATAT
*
7408651 ATTTTATTATATAT
1 TTTTTATTATATAT
7408665 TTTTTATTAT
1 TTTTTATTAT
7408675 GATGTATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
13 4 0.12
14 21 0.66
15 5 0.16
16 2 0.06
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.73
Consensus pattern (14 bp):
TTTTTATTATATAT
Found at i:7408745 original size:17 final size:17
Alignment explanation
Indices: 7408725--7408763 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
7408715 AAATAAAATA
*
7408725 AAAATAA-AAATAAGAGT
1 AAAATAATAAAGAAGA-T
7408742 AAAATAATAAAGAAGAT
1 AAAATAATAAAGAAGAT
7408759 AAAAT
1 AAAAT
7408764 CACCTTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (17 bp):
AAAATAATAAAGAAGAT
Found at i:7410147 original size:72 final size:72
Alignment explanation
Indices: 7409931--7410941 Score: 1217
Period size: 72 Copynumber: 13.7 Consensus size: 72
7409921 GTGATCTGAA
** * *
7409931 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAGAC-GAAAATTGAAAATACCTCAG
1 GCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAA-ACAG-AAATTGAAAATACCTCA-
* * *
7409995 CATGTGAAC-CGAG
61 -ACGTG-TCTTGAG
** * *
7410008 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACG
1 GCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAAATACCTCAACG
7410073 TGTCTTGAG
64 TGTCTTGAG
* * *
7410082 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAATCAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACGTG
**
7410147 TCCCGAG
66 TCTTGAG
** * * *
7410154 GCTCAACTCACCTCTCGCAATATGAGTTTATTTTTTTGAAAGACAGAAATTAAAAATACCTCAGC
1 GCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAA-ACAGAAATTGAAAATACCTCA--
* * *
7410219 ATGTGAAC-CGAG
61 ACGTG-TCTTGAG
* * * *
7410231 GCTCAACTCACCTT-TCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTAAAAATACCTCAAC
1 GCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAAATACCTCAAC
7410295 GTGTCTTGAG
63 GTGTCTTGAG
*
7410305 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTAAAACAGAAATTGAAAATACCTCAACGTG
1 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACGTG
7410370 TCTTGAG
66 TCTTGAG
*
7410377 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTAAAACAGAAATTGAAAATACCTCAACGTG
1 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACGTG
7410442 TCTTGAG
66 TCTTGAG
*
7410449 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTAAAACAGAAATTGAAAATACCTCAACGTG
1 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACGTG
7410514 TCTTGAG
66 TCTTGAG
*
7410521 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTAAAACAGAAATTGAAAATACCTCAACGTG
1 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACGTG
7410586 TCTTGAG
66 TCTTGAG
* *
7410593 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACGTG
**
7410658 TCCCGAG
66 TCTTGAG
** * *
7410665 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAGAC-GAAAATTGAAAATACCTCAG
1 GCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAA-ACAG-AAATTGAAAATACCTCA-
* * *
7410729 CATGTGAAC-CGAG
61 -ACGTG-TCTTGAG
* * * *
7410742 GCTCAACTCACCTT-TCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTAAAAATACCTCAAC
1 GCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAAATACCTCAAC
7410806 GTGTCTTGAG
63 GTGTCTTGAG
* *
7410816 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACGTG
**
7410881 TCCCGAG
66 TCTTGAG
** * *
7410888 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTGAAAA
1 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAAA
7410942 AACATTAATT
Statistics
Matches: 843, Mismatches: 68, Indels: 50
0.88 0.07 0.05
Matches are distributed among these distances:
72 486 0.58
73 18 0.02
74 114 0.14
75 36 0.04
76 58 0.07
77 125 0.15
78 6 0.01
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.31
Consensus pattern (72 bp):
GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACGTG
TCTTGAG
Found at i:7410212 original size:223 final size:220
Alignment explanation
Indices: 7409931--7411158 Score: 1421
Period size: 223 Copynumber: 5.5 Consensus size: 220
7409921 GTGATCTGAA
*
7409931 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAGAC-GAAAATTGAAAATACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAG-AAATTGAAAATACCTCAG
*
7409995 CATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGA
63 CA-GTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGA
*
7410060 AAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAATCAG
127 AAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAG
* * **
7410125 AAATTGAAATTACCTCAGCGTGTCCCGAG
192 AAATTGAAAATACCTCAACGTGTCTTGAG
* *
7410154 GCTCAACTCACCTCTCGCAATATGAGTTTATTTTTTTGAAAGACAGAAATTAAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACCTCAGC
* * *
7410219 ATGTGAACCGAGGCTCAACTCACCTTTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTAAA
64 A-GTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAA
*
7410284 AATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTAAAACAGA
128 AATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGA
7410349 AATTGAAAATACCTCAACGTGTCTTGAG
193 AATTGAAAATACCTCAACGTGTCTTGAG
** * *
7410377 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTT-AAAACAGAAATTGAAAATACCTCAAC-G
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCAG
* * ** *
7410440 TG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTT-AAAACAGAAATTGAAAA
66 TGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAA
*
7410502 TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTAAAACAGAAA
130 TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAA
7410567 TTGAAAATACCTCAACGTGTCTTGAG
195 TTGAAAATACCTCAACGTGTCTTGAG
** * *
7410593 GCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGC-G
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCAG
** *
7410656 TGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAGAC-GAAAATTGAAA
66 TGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAG-AAATTGAAA
* * * * * *
7410720 ATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTT-TCGCAATATAAGTTGATTTTTTTGAAA
129 ATACCTCA--ACGTG-TCTTGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAA
*
7410783 ACAGAAATTAAAAATACCTCAACGTGTCTTGAG
188 ACAGAAATTGAAAATACCTCAACGTGTCTTGAG
** * *
7410816 GCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGC-G
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCAG
**
7410879 TGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTGAAAAAA
66 TGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT--------T---TTG--AAAA
** * * ** ** *
7410944 CATTAATTGAAAATACCTTAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
117 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--A
* * * * * *
7411009 TTTTGATAAAAATAGAATTTGAAAATATCTCAGCGTGTCCTAAG
180 TTTTG---AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAG
* * *
7411053 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACAAACAAAAATTGAAATTATCTCAGC-
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAACAGAAATTGAAAATACCTCAGCA
* * *
7411116 GT---CTTGAGGCTCAACTCACTTTTCGCAATATGAGTTGATTTTT
65 GTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
7411159 GTTTGAAACA
Statistics
Matches: 904, Mismatches: 65, Indels: 68
0.87 0.06 0.07
Matches are distributed among these distances:
215 4 0.00
216 195 0.22
217 12 0.01
218 36 0.04
219 19 0.02
220 21 0.02
221 35 0.04
222 8 0.01
223 378 0.42
224 5 0.01
227 1 0.00
232 1 0.00
233 3 0.00
234 40 0.04
235 7 0.01
236 48 0.05
237 66 0.07
238 25 0.03
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.31
Consensus pattern (220 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCAG
TGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAAT
ACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAAT
TGAAAATACCTCAACGTGTCTTGAG
Found at i:7411066 original size:77 final size:75
Alignment explanation
Indices: 7410948--7411158 Score: 279
Period size: 77 Copynumber: 2.8 Consensus size: 75
7410938 AAAAAACATT
* * *
7410948 AATTGAAAATACCTTAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
*
7411013 GATAAA-AATA
66 GACAAACAA-A
*
7411023 GAATTTGAAAATATCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTT
1 -AA-TTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
7411086 TTGACAAACAAA
64 TTGACAAACAAA
* * * *
7411098 AATTGAAATTATCTCAGC--GTCTTGAGGCTCAACTCACTTTTCGCAATATGAGTTGATTTTT
1 AATTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
7411159 GTTTGAAACA
Statistics
Matches: 121, Mismatches: 10, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
71 34 0.28
73 18 0.15
74 2 0.02
75 11 0.09
76 4 0.03
77 52 0.43
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (75 bp):
AATTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
GACAAACAAA
Found at i:7411078 original size:165 final size:160
Alignment explanation
Indices: 7410788--7411105 Score: 440
Period size: 165 Copynumber: 2.0 Consensus size: 160
7410778 TGAAAACAGA
** **
7410788 AATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA
1 AATTAAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGA
* *
7410853 AAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
66 AAACAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
7410918 TTTTTGA-AAAGCATAAATTGAAAAAACATT
131 TTTTTGACAAA-CAAAAATTGAAAAAACATT
* * * *
7410948 AATTGAAAATACCTTAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTAAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTT
* * * *
7411013 GATAAAAATAGAATTTGAAAATATCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGA
64 G---AAAACAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGA
7411078 GTTGATTTTTGACAAACAAAAATTGAAA
126 GTTGATTTTTGACAAACAAAAATTGAAA
7411106 TTATCTCAGC
Statistics
Matches: 137, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
160 51 0.37
162 5 0.04
165 78 0.57
166 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (160 bp):
AATTAAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGA
AAACAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGACAAACAAAAATTGAAAAAACATT
Found at i:7411197 original size:238 final size:233
Alignment explanation
Indices: 7410710--7411246 Score: 727
Period size: 238 Copynumber: 2.3 Consensus size: 233
7410700 TTTAAAGACG
** * *
7410710 AAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTTTCGCAATATAAGTTGATTT
1 AAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * **
7410775 TTTTGAAAACAGAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
64 TTTTGAAAACAGAAATTAAAAATACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATATG
*
7410840 AGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCG
129 AGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAGCG-GTCCCGAGGCTCAACTCACCTCTCG
*
7410905 CAATATGAGTTGATTTTTGAAAAGCATAAATTGAAAAAACA
193 CAATATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACA
** *
7410946 TTAATTGAAAATACCTTAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * * * *
7411011 TTGATAAAAATAGAATTTGAAAATATCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATAT
66 TTG---AAAACAGAAATTAAAAATACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATAT
* * ** * *
7411076 GAGTTGATTTTTGACAAACAAAAATTGAAATTATCTCAGC-GTCTTGAGGCTCAACTCACTTTTC
128 GAGTTGAATTTTGA-AAACAAAAATTGAAATTACCTCAGCGGTCCCGAGGCTCAACTCACCTCTC
*
7411140 GCAATATGAGTTGATTTTTGTTTGAAA-CATAAATTAAAAAAACA
192 GCAATATGAGTTGATTTTTG---AAAAGCATAAATTAAAAAAACA
**
7411184 AAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
7411247 GAAAAGCAGA
Statistics
Matches: 264, Mismatches: 30, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
234 44 0.17
236 57 0.22
237 63 0.24
238 97 0.37
239 3 0.01
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (233 bp):
AAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TTGAAAACAGAAATTAAAAATACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAG
TTGAATTTTGAAAACAAAAATTGAAATTACCTCAGCGGTCCCGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACA
Found at i:7411387 original size:14 final size:13
Alignment explanation
Indices: 7411349--7411393 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
7411339 TTGATTTTTG
*
7411349 AAAAACGGAAATT
1 AAAAACAGAAATT
*
7411362 AAAAGCAGAAATT
1 AAAAACAGAAATT
*
7411375 GAAAAACATAAATT
1 -AAAAACAGAAATT
7411389 AAAAA
1 AAAAA
7411394 TACCTCGGCG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.67, C:0.07, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:7411407 original size:100 final size:101
Alignment explanation
Indices: 7411177--7411465 Score: 404
Period size: 100 Copynumber: 2.9 Consensus size: 101
7411167 CATAAATTAA
* **
7411177 AAAAACAAAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * *
7411242 GA--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
66 GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
*
7411276 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
7411341 GATTTTTGAAAAACGGAAATT-AAAAGCAGAAATTG
66 GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
* * * * *
7411376 AAAAACATAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCTCAATATGAGTT
1 AAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
7411441 GATTTTTGAAAAGCATAAATTGAAA
66 GATTTTTGAAAAACAGAAATTGAAA
7411466 TTACCTGAGC
Statistics
Matches: 169, Mismatches: 18, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
99 63 0.37
100 89 0.53
101 17 0.10
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (101 bp):
AAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
Found at i:7411471 original size:73 final size:74
Alignment explanation
Indices: 7411373--7411540 Score: 250
Period size: 73 Copynumber: 2.3 Consensus size: 74
7411363 AAAGCAGAAA
* * * *
7411373 TTGAAAAACATAAATTAAAAATACCTCG-GCGTGCCCCGAGGCTCAGCTCACCTCTCTCAATATG
1 TTGAAAAGCATAAATTGAAAATACCT-GAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
7411437 AGTTGA-TTT
65 AGTTGATTTT
* * *
7411446 TTGAAAAGCATAAATTGAAATTACCTGAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTGAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
7411511 GTTGATTTT
66 GTTGATTTT
7411520 TTGAAAAGCATAAATTGAAAA
1 TTGAAAAGCATAAATTGAAAA
7411541 AATAGAAATT
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
72 1 0.01
73 61 0.72
74 23 0.27
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (74 bp):
TTGAAAAGCATAAATTGAAAATACCTGAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:7427050 original size:16 final size:16
Alignment explanation
Indices: 7427012--7427050 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7427002 NNNNNAAAAA
*
7427012 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
7427028 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
7427044 AATAACT
1 AAAAACT
7427051 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:7427249 original size:30 final size:30
Alignment explanation
Indices: 7427208--7427303 Score: 165
Period size: 30 Copynumber: 3.2 Consensus size: 30
7427198 TAGGTACAAG
* *
7427208 TGGTGCTGGAGCAAGTGTGGCTAATGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
7427238 AGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
7427268 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
7427298 TGGTGG
1 TGGTGG
7427304 GCTAGGATTT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.18, C:0.07, G:0.49, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:7427266 original size:18 final size:18
Alignment explanation
Indices: 7427243--7427296 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
7427233 GGAGTAGGTG
7427243 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
7427261 GT-G-G--AGT-TGG-TG
1 GTGGAGCAAGTGTGGCTA
7427273 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
7427291 GTGGAG
1 GTGGAG
7427297 TTGGTGGGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 3 0.11
13 4 0.14
14 4 0.14
16 4 0.14
17 4 0.14
18 9 0.32
ACGTcount: A:0.19, C:0.07, G:0.50, T:0.24
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:7430532 original size:84 final size:84
Alignment explanation
Indices: 7430397--7430917 Score: 796
Period size: 84 Copynumber: 6.2 Consensus size: 84
7430387 TACAGATCTT
* * * ** * * * *
7430397 ATCT-CCCTAAGCAGTAGGGGAGTAGATTAAAGACAATGAACCTTAACCCCCTAAACAGTAGGGT
1 ATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCTTAAGCAGTAGGGT
* *
7430461 AATAGGTTAGAAAATACAG
66 AACAGGCTAGAAAATACAG
**
7430480 ATCTCCTTTAAACAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAAACCCC-TAAGCAGTAGGG
1 ATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGTGAGCCTT-AACCCCTTAAGCAGTAGGG
*
7430544 TAACAGGCTGGAAAATACAG
65 TAACAGGCTAGAAAATACAG
** * *
7430564 ATCTCCCCTAAACAGTAGCAGATCAGATCAAAGACAGTGAGCCTTAACCCCTTAAGCAGTAGGGT
1 ATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCTTAAGCAGTAGGGT
7430629 AACAGGCTAGAAAATACAG
66 AACAGGCTAGAAAATACAG
7430648 ATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCTTAAGCAGTAGGGT
1 ATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCTTAAGCAGTAGGGT
*
7430713 AACAGGCTGGAAAATACAG
66 AACAGGCTAGAAAATACAG
*
7430732 ATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGT
1 ATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCTTAAGCAGTAGGGT
*
7430797 AACAGGCTAGAAAATACAT
66 AACAGGCTAGAAAATACAG
* *
7430816 ATCTCCCCTAAACAGTAATGGAGCAGATCGAAGACAGTGAGCCTTAACCCCTTGAGCAGTAGGGT
1 ATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCTTAAGCAGTAGGGT
7430881 AACAGGCT-GAAAAATACAG
66 AACAGGCTAG-AAAATACAG
7430900 ATCTCCCCTAAACAGTAG
1 ATCTCCCCTAAACAGTAG
7430918 GGTATAGGCT
Statistics
Matches: 401, Mismatches: 33, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
83 11 0.03
84 384 0.96
85 6 0.01
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (84 bp):
ATCTCCCCTAAACAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCTTAAGCAGTAGGGT
AACAGGCTAGAAAATACAG
Found at i:7430927 original size:39 final size:40
Alignment explanation
Indices: 7430872--7430956 Score: 145
Period size: 39 Copynumber: 2.1 Consensus size: 40
7430862 ACCCCTTGAG
7430872 CAGTAGGGTAACAGGCTGAAAAATACAGATCTCCCCTAAA
1 CAGTAGGGTAACAGGCTGAAAAATACAGATCTCCCCTAAA
*
7430912 CAGTAGGGT-ATAGGCTGAAAAATACAGATCTCCCCTAAA
1 CAGTAGGGTAACAGGCTGAAAAATACAGATCTCCCCTAAA
*
7430951 TAGTAG
1 CAGTAG
7430957 TGGAGTAGAT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
39 34 0.79
40 9 0.21
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.20
Consensus pattern (40 bp):
CAGTAGGGTAACAGGCTGAAAAATACAGATCTCCCCTAAA
Found at i:7430947 original size:123 final size:124
Alignment explanation
Indices: 7430780--7431026 Score: 329
Period size: 123 Copynumber: 2.0 Consensus size: 124
7430770 GAGCCTTAAC
* *
7430780 CCCCTAAGCAGTAGGGTAACAGGCTAGAAAATACATATCTCCCCTAAACAGTAATGGAGCAGATC
1 CCCCTAAACAGTAGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAACAGTAATGGAGCAGATC
** * * * *
7430845 GAAGACAGTGAGCCTTAACCCCTTGAGCAGTAGGGTAACAGGCTGAAAAA-TACAGATCT
66 GAAGACAGCAAGCATTAACCCCCTAAGCAGTAGAGTAACAGGCT-AAAAATTACAGATCT
* * * *
7430904 CCCCTAAACAGTAGGGT-ATAGGCT-GAAAAATACAGATCTCCCCTAAATAGTAGTGGAGTAGAT
1 CCCCTAAACAGTAGGGTAACAGGCTAG-AAAATACAGATCTCCCCTAAACAGTAATGGAGCAGAT
* *
7430967 TGAAGTCAGCAAGCATTAACCCCCTAAGCAGTAGAGTAACAGGCTAAAAATTACAGATCT
65 CGAAGACAGCAAGCATTAACCCCCTAAGCAGTAGAGTAACAGGCTAAAAATTACAGATCT
7431027 TATATCCCTA
Statistics
Matches: 107, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
122 6 0.06
123 85 0.79
124 16 0.15
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.20
Consensus pattern (124 bp):
CCCCTAAACAGTAGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAACAGTAATGGAGCAGATC
GAAGACAGCAAGCATTAACCCCCTAAGCAGTAGAGTAACAGGCTAAAAATTACAGATCT
Found at i:7431074 original size:88 final size:86
Alignment explanation
Indices: 7430982--7431318 Score: 307
Period size: 88 Copynumber: 3.8 Consensus size: 86
7430972 TCAGCAAGCA
*
7430982 TTAACCCCCTAAGCAGTAGAGTAACAGGCTAAAAATTACAGATCTTATATCCCTAAGCAGTAGTG
1 TTAACCCCCTAAGCAGTAG-GTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTG
7431047 GAGCAAATCGAAGACGGTGAGCC
65 GAGCAAATCG-AGACGGTGAGCC
* * *
7431070 TTAACCCCCTAAGCAGTAGGGTAGCAGGCTAAAGATTATAGATCTTATCTCCCTAAGCAGTAGTG
1 TTAACCCCCTAAGCAGTA-GGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTG
** *
7431135 GAGCGGATAGGAGACGGTGAGCC
65 GAGCAAAT-CGAGACGGTGAGCC
* * * * * ** * * *
7431158 TTATCCCTCTAAGCAGTAGGAAAATATGCTGGAAATTATAGATTTTATCTCCCTTAA-TAGTAGT
1 TTAACCCCCTAAGCAGTAGG-TAACAGGCTAAAAATTACAGATCTTATCTCCC-TAAGCAGTAGT
* * *
7431222 GGAGCAGATCGAGAACAGTAAGCC
64 GGAGCAAATCGAG-ACGGTGAGCC
* * * * * * * * * * *
7431246 TTATCTCCCTGAGCAGCAGCGGAGCAGGCTGAAGATTACAAATCATATCTCCCTAAGCAGTAGCG
1 TTAACCCCCTAAGCAGTAG-GTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTG
*
7431311 GAGAAAAT
65 GAGCAAAT
7431319 TGAAACGAAA
Statistics
Matches: 202, Mismatches: 40, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
87 8 0.04
88 188 0.93
89 6 0.03
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.23
Consensus pattern (86 bp):
TTAACCCCCTAAGCAGTAGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGG
AGCAAATCGAGACGGTGAGCC
Found at i:7431124 original size:44 final size:44
Alignment explanation
Indices: 7430988--7431132 Score: 116
Period size: 44 Copynumber: 3.3 Consensus size: 44
7430978 AGCATTAACC
* * * * *
7430988 CCCTAAGCAGTAGAGTAACAGGCTAAAAATTACAGATCTTATAT
1 CCCTAAGCAGTAGGGTAGCAGGCTAAAGATTATAGATCTTATCT
** * *** * * *
7431032 CCCTAAGCAGTAGTGG-AGCA-AATCGAAGACGGT-GAGCCTTAACC
1 CCCTAAGCAGTAG-GGTAGCAGGCT-AAAGATTATAGA-TCTTATCT
7431076 CCCTAAGCAGTAGGGTAGCAGGCTAAAGATTATAGATCTTATCT
1 CCCTAAGCAGTAGGGTAGCAGGCTAAAGATTATAGATCTTATCT
7431120 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
7431133 TGGAGCGGAT
Statistics
Matches: 72, Mismatches: 23, Indels: 12
0.67 0.21 0.11
Matches are distributed among these distances:
43 5 0.07
44 63 0.88
45 4 0.06
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.22
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGTAGCAGGCTAAAGATTATAGATCTTATCT
Found at i:7431161 original size:44 final size:44
Alignment explanation
Indices: 7431025--7431176 Score: 132
Period size: 44 Copynumber: 3.5 Consensus size: 44
7431015 AATTACAGAT
* ** *
7431025 CTTATATCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGTGAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGCGGATAGAAGACGGTGAGC
* * * *** *
7431069 CTTAACCCCCTAAGCAGTAG-GGTAGCAGGCTA-AAGATTAT-AGAT
1 CTTATCTCCCTAAGCAGTAGTGG-AGC-GGATAGAAGACGGTGAG-C
*
7431113 CTTATCTCCCTAAGCAGTAGTGGAGCGGATAGGAGACGGTGAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGCGGATAGAAGACGGTGAGC
7431157 CTTATC-CCTCTAAGCAGTAG
1 CTTATCTCC-CTAAGCAGTAG
7431177 GAAAATATGC
Statistics
Matches: 82, Mismatches: 19, Indels: 14
0.71 0.17 0.12
Matches are distributed among these distances:
43 10 0.12
44 67 0.82
45 5 0.06
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (44 bp):
CTTATCTCCCTAAGCAGTAGTGGAGCGGATAGAAGACGGTGAGC
Found at i:7431693 original size:21 final size:21
Alignment explanation
Indices: 7431664--7431706 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
7431654 AAATAGGAAG
7431664 ATTTGATTTTGATTTT-TTATT
1 ATTTGATTTT-ATTTTATTATT
*
7431685 ATTTTATTTTATTTTATTATT
1 ATTTGATTTTATTTTATTATT
7431706 A
1 A
7431707 AATTAGTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (21 bp):
ATTTGATTTTATTTTATTATT
Found at i:7431860 original size:35 final size:33
Alignment explanation
Indices: 7431798--7431880 Score: 96
Period size: 35 Copynumber: 2.5 Consensus size: 33
7431788 TACTTTGGGA
* *
7431798 TTCCTACTTCAATTTAGAATTGGATTATTCTCTCTT
1 TTCCTATTTCAA-TTAGAATTGAATTATT-T-TCTT
*
7431834 TTCCTATTTCAATTGGAATTGAATTATTTTCTT
1 TTCCTATTTCAATTAGAATTGAATTATTTTCTT
*
7431867 TT-CTCTTTCAATTA
1 TTCCTATTTCAATTA
7431881 CATGGGAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
32 10 0.24
33 6 0.14
34 1 0.02
35 14 0.33
36 11 0.26
ACGTcount: A:0.23, C:0.17, G:0.07, T:0.53
Consensus pattern (33 bp):
TTCCTATTTCAATTAGAATTGAATTATTTTCTT
Found at i:7432333 original size:12 final size:12
Alignment explanation
Indices: 7432318--7432360 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 12
7432308 TCAACTATTA
7432318 TTATATTTCTATTT
1 TTATATTTCTA--T
7432332 ATTATATTTCTAT
1 -TTATATTTCTAT
*
7432345 TTATATTACTAT
1 TTATATTTCTAT
7432357 TTAT
1 TTAT
7432361 TGACATTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 15 0.56
13 1 0.04
15 11 0.41
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (12 bp):
TTATATTTCTAT
Found at i:7432333 original size:15 final size:15
Alignment explanation
Indices: 7432301--7432348 Score: 69
Period size: 15 Copynumber: 3.1 Consensus size: 15
7432291 ATTAATCTAT
*
7432301 TTATATTTCAACTATTA
1 TTATATTTCTA-T-TTA
7432318 TTATATTTCTATTTA
1 TTATATTTCTATTTA
7432333 TTATATTTCTATTTA
1 TTATATTTCTATTTA
7432348 T
1 T
7432349 ATTACTATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 19 0.63
16 1 0.03
17 10 0.33
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.62
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:7432415 original size:3 final size:3
Alignment explanation
Indices: 7432400--7432554 Score: 122
Period size: 3 Copynumber: 51.7 Consensus size: 3
7432390 TTTTATTTTT
* *
7432400 TTA TT- TTA CTA TTA TT- TATA TTTA TTA TTA TTA TTA TTA TTA CTA
1 TTA TTA TTA TTA TTA TTA T-TA -TTA TTA TTA TTA TTA TTA TTA TTA
* * * ** * *
7432445 TCA TTA TTA TTT TTA CTA TTA CAA TTA TTT TCTA TAA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
*
7432491 TTA TTA TCT- TTA TTA TTA TTA TTA TTA TTA TT- TTCA TTA -TA GTA
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
* *
7432535 CTA TTA TTA TTA CTA TTA TT
1 TTA TTA TTA TTA TTA TTA TT
7432555 TTTGTTATCC
Statistics
Matches: 120, Mismatches: 22, Indels: 20
0.74 0.14 0.12
Matches are distributed among these distances:
2 8 0.07
3 104 0.87
4 7 0.06
5 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:7433919 original size:30 final size:30
Alignment explanation
Indices: 7433885--7433947 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
7433875 ACTTATTTTA
7433885 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
7433915 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
7433945 TTG
1 TTG
7433948 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:7435196 original size:25 final size:25
Alignment explanation
Indices: 7435162--7435213 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
7435152 GTGGGGGAGA
7435162 ATATTTGGCCAAAAACTCTAACACC
1 ATATTTGGCCAAAAACTCTAACACC
7435187 ATATTTGGCCAAAAACTCTAACACC
1 ATATTTGGCCAAAAACTCTAACACC
7435212 AT
1 AT
7435214 TACTAAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.40, C:0.27, G:0.08, T:0.25
Consensus pattern (25 bp):
ATATTTGGCCAAAAACTCTAACACC
Found at i:7435454 original size:36 final size:35
Alignment explanation
Indices: 7435382--7435455 Score: 87
Period size: 36 Copynumber: 2.1 Consensus size: 35
7435372 TTTATATTTT
7435382 ATTAAATTATATTTAGTAATAATTATATTAAAAATA
1 ATTAAATTATATTTAGTAAT-ATTATATTAAAAATA
* * *
7435418 ATTAAATTATTTATTATTAAT-TTATATTTAATAATA
1 ATTAAATTATAT-TTAGTAATATTATA-TTAAAAATA
7435454 AT
1 AT
7435456 CCTATTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
35 5 0.15
36 21 0.64
37 7 0.21
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (35 bp):
ATTAAATTATATTTAGTAATATTATATTAAAAATA
Found at i:7435853 original size:29 final size:29
Alignment explanation
Indices: 7435820--7435889 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 29
7435810 TTAGTCATGT
7435820 TATTT-GTTTGGTTTAAAAATTAAAATCTA
1 TATTTGGTTT-GTTTAAAAATTAAAATCTA
*
7435849 TATTTTGGTTTTTTTAAAAATTAAAATCTA
1 TA-TTTGGTTTGTTTAAAAATTAAAATCTA
7435879 TATTTTGGTTT
1 TA-TTTGGTTT
7435890 TTTTTGTATT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
29 2 0.05
30 32 0.84
31 4 0.11
ACGTcount: A:0.33, C:0.03, G:0.10, T:0.54
Consensus pattern (29 bp):
TATTTGGTTTGTTTAAAAATTAAAATCTA
Found at i:7435891 original size:29 final size:30
Alignment explanation
Indices: 7435831--7435893 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
7435821 ATTTGTTTGG
7435831 TTTAAAAATTAAAATCTATATTTTGGTTTT
1 TTTAAAAATTAAAATCTATATTTTGGTTTT
7435861 TTTAAAAATTAAAATCTATATTTTGGTTTT
1 TTTAAAAATTAAAATCTATATTTTGGTTTT
7435891 TTT
1 TTT
7435894 TGTATTACTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.56
Consensus pattern (30 bp):
TTTAAAAATTAAAATCTATATTTTGGTTTT
Found at i:7436275 original size:26 final size:26
Alignment explanation
Indices: 7436246--7436303 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
7436236 TGATACAAAT
7436246 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
7436272 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
7436298 TGATAA
1 TGATAA
7436304 GAATTTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:7439592 original size:5 final size:5
Alignment explanation
Indices: 7439584--7439617 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
7439574 GTGAAAATAA
7439584 AAAAT AAAAT AAAAT AAAAT AAAATT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAA-T AAAAT AAA
7439618 GAACACACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:7439810 original size:24 final size:24
Alignment explanation
Indices: 7439766--7439817 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7439756 AATCAAGGTC
* *
7439766 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
7439790 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
7439814 AAAT
1 AAAT
7439818 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:7444023 original size:15 final size:14
Alignment explanation
Indices: 7443982--7444023 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
7443972 CCAATTTTTG
7443982 AAAATAAAA-AAAT
1 AAAATAAAATAAAT
7443995 AAAATAAAATTAAATT
1 AAAATAAAA-TAAA-T
*
7444011 AAATTAAAATAAA
1 AAAATAAAATAAA
7444024 AAACACGCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 9 0.36
15 7 0.28
16 9 0.36
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (14 bp):
AAAATAAAATAAAT
Found at i:7444214 original size:24 final size:24
Alignment explanation
Indices: 7444170--7444221 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7444160 AATTAAGGTC
* *
7444170 AAATATATTGTGCTAATAAATGCT
1 AAATATATTGTACTAATAAATACT
*
7444194 AAATATATTGTACTCATAAATACT
1 AAATATATTGTACTAATAAATACT
7444218 AAAT
1 AAAT
7444222 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.37
Consensus pattern (24 bp):
AAATATATTGTACTAATAAATACT
Found at i:7447510 original size:30 final size:30
Alignment explanation
Indices: 7447476--7447537 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
7447466 TAAAATTTTA
**
7447476 AATTGAGTTCGGTTGGTAAAATATTCGACT
1 AATTGAGTTCGGTTACTAAAATATTCGACT
7447506 AATTGAGTTCGGTTACTAAAATATTCGACT
1 AATTGAGTTCGGTTACTAAAATATTCGACT
7447536 AA
1 AA
7447538 CCTAAAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.35
Consensus pattern (30 bp):
AATTGAGTTCGGTTACTAAAATATTCGACT
Found at i:7447850 original size:22 final size:23
Alignment explanation
Indices: 7447830--7447872 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
7447820 AATTTATAAT
7447830 TTTTTATAATAAATTTAATAACA
1 TTTTTATAATAAATTTAATAACA
* *
7447853 TTTTTA-ATTTAATTTAATAA
1 TTTTTATAATAAATTTAATAA
7447873 ATTAATATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (23 bp):
TTTTTATAATAAATTTAATAACA
Found at i:7449830 original size:93 final size:93
Alignment explanation
Indices: 7449718--7449890 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
7449708 CGCCCATAAG
* *
7449718 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
7449783 ATGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
7449811 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
7449876 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
7449891 CAAATATCCT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:7449886 original size:46 final size:46
Alignment explanation
Indices: 7449711--7449886 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
7449701 TGTAACCCGC
* * *
7449711 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
7449757 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
7449807 CTC-T---TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
*
7449850 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
7449887 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.06
44 1 0.01
46 63 0.58
47 27 0.25
49 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:7450004 original size:50 final size:50
Alignment explanation
Indices: 7449940--7450040 Score: 157
Period size: 50 Copynumber: 2.0 Consensus size: 50
7449930 TCCTAAGGTT
* *
7449940 CAACGGAACCTTTTTCCCAATCATGTGCCTCAACCATCTTCTACGGAATG
1 CAACGGAACATTTTTCCCAATCATATGCCTCAACCATCTTCTACGGAATG
* * *
7449990 CAACGGGACATTTTTCCCAATCATATGTCTCAACCATCTTCTATGGAATG
1 CAACGGAACATTTTTCCCAATCATATGCCTCAACCATCTTCTACGGAATG
7450040 C
1 C
7450041 CGATACCGAT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.30
Consensus pattern (50 bp):
CAACGGAACATTTTTCCCAATCATATGCCTCAACCATCTTCTACGGAATG
Found at i:7453126 original size:52 final size:52
Alignment explanation
Indices: 7453067--7453168 Score: 204
Period size: 52 Copynumber: 2.0 Consensus size: 52
7453057 GGCTTTGGGT
7453067 TGTTGGGTTAGTATTTGGATTTGGGTCATTGGGCTTGTAAATTGACCGAAGC
1 TGTTGGGTTAGTATTTGGATTTGGGTCATTGGGCTTGTAAATTGACCGAAGC
7453119 TGTTGGGTTAGTATTTGGATTTGGGTCATTGGGCTTGTAAATTGACCGAA
1 TGTTGGGTTAGTATTTGGATTTGGGTCATTGGGCTTGTAAATTGACCGAA
7453169 CTTTTATTTG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.20, C:0.09, G:0.32, T:0.39
Consensus pattern (52 bp):
TGTTGGGTTAGTATTTGGATTTGGGTCATTGGGCTTGTAAATTGACCGAAGC
Found at i:7454084 original size:186 final size:185
Alignment explanation
Indices: 7453763--7454271 Score: 637
Period size: 186 Copynumber: 2.7 Consensus size: 185
7453753 GATACAAGAT
* * * *
7453763 TTGTAGCTTTATCTTGCTCTACTGCAACTTCAGGGAGATAAGATTTTCTATTGTAGCTTCATTCC
1 TTGTAGCTTTATCTTGCCCCACTGCAACTTCAGGGAGATAAGATTTGCTATTGTAGCTTTATTCC
* * * * *
7453828 AACCCACTGCAACTTTAGGAGG-ACT-GGATTCGTAACTTCATCTTGCTCCACTGTAATTTTAGG
66 AACCCACTGCAACTTTAGG-GGTA-TAGGATTTGTAGCTTCATCTTACTCCACTGCAACTTTA-G
* * *
7453891 GAGATAAGATCACTGCTTTATCAGTTTCACTGCAATTTTAAGAAAATCAAATTTAATG
128 GAGATAAGATCACTGCTTTATCAGTTTCACTGCAACTTCAAGAAAACCAAATTTAATG
* * * *
7453949 TTGTTGCTTTATCTTGCCCCACTACAACTTAAGGGAGATAAGATTCGCTATTGTAGCTTTATTCC
1 TTGTAGCTTTATCTTGCCCCACTGCAACTTCAGGGAGATAAGATTTGCTATTGTAGCTTTATTCC
* *
7454014 AACCCACTGCAGCTTTAGGGGTATAGGATTTGTAGCTTCATCTTACTCCACTACAACTTTAGGTA
66 AACCCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTACTCCACTGCAACTTTAGG-A
*** * * *
7454079 GATAAGATTGTTGCTTTATCCGTTTCATTGCAACTTCAAGAAAACCAGATTTAATG
130 GATAAGATCACTGCTTTATCAGTTTCACTGCAACTTCAAGAAAACCAAATTTAATG
* * * * *
7454135 TTGTAGCTTTATCTTGCCCCATTGCATCTTCAGGGAGATGAGATTTGCTACTGTAG-TTTCAATC
1 TTGTAGCTTTATCTTGCCCCACTGCAACTTCAGGGAGATAAGATTTGCTATTGTAGCTTT-ATTC
** * * *
7454199 CATTCCACTACAACTTTAGGGATATAGGATTTGTAGCTTCGTCTTACTCCACTGCAACTTTAGAG
65 CAACCCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTACTCCACTGCAACTTTAG-G
7454264 AGATAAGA
129 AGATAAGA
7454272 CTCGTCATTG
Statistics
Matches: 278, Mismatches: 40, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
185 8 0.03
186 269 0.97
187 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (185 bp):
TTGTAGCTTTATCTTGCCCCACTGCAACTTCAGGGAGATAAGATTTGCTATTGTAGCTTTATTCC
AACCCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTACTCCACTGCAACTTTAGGAG
ATAAGATCACTGCTTTATCAGTTTCACTGCAACTTCAAGAAAACCAAATTTAATG
Found at i:7458824 original size:38 final size:38
Alignment explanation
Indices: 7458782--7458857 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
7458772 TATCAGTTGC
7458782 GAATCCGAGATTCAGATATTCCCAAAACTGCCTTCAGA
1 GAATCCGAGATTCAGATATTCCCAAAACTGCCTTCAGA
7458820 GAATCCGAGATTCAGATATTCCCAAAACTGCCTTCAGA
1 GAATCCGAGATTCAGATATTCCCAAAACTGCCTTCAGA
7458858 ACGAGATATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (38 bp):
GAATCCGAGATTCAGATATTCCCAAAACTGCCTTCAGA
Found at i:7463016 original size:39 final size:40
Alignment explanation
Indices: 7462865--7463034 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
7462855 GGACTAAGAT
* * *
7462865 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
7462905 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
7462945 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
7462985 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
7463024 CCGAAGGCATT
1 CCGAAGGCATT
7463035 TGAACGAGGA
Statistics
Matches: 112, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:7463054 original size:79 final size:80
Alignment explanation
Indices: 7462887--7463069 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
7462877 GTGCGAGATA
* * * *
7462887 CTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
7462952 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
7462967 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
7463031 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
7463046 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
7463070 TACGTGATTT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.16
79 47 0.55
80 24 0.28
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:7466388 original size:25 final size:24
Alignment explanation
Indices: 7466360--7466410 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
7466350 TGGTATCCAT
*
7466360 AATGCCAATT-CACAACAAGCATATA
1 AATGACAATTACAC-ACAA-CATATA
*
7466385 AATGACAATTATACACAACATATA
1 AATGACAATTACACACAACATATA
7466409 AA
1 AA
7466411 AATGGTCACC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 8 0.35
25 13 0.57
26 2 0.09
ACGTcount: A:0.53, C:0.20, G:0.06, T:0.22
Consensus pattern (24 bp):
AATGACAATTACACACAACATATA
Found at i:7467367 original size:31 final size:30
Alignment explanation
Indices: 7467332--7467403 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 30
7467322 TCTAAATCTG
* *
7467332 AATTTTGCTTTTCTTAATCTAT-A-TGTAATC
1 AATTTTGCTTAT-TTAAT-TATAATTCTAATC
*
7467362 AAATTTAGCTTATTTAATTATAATTCTAATC
1 -AATTTTGCTTATTTAATTATAATTCTAATC
7467393 AATTTTGCTTA
1 AATTTTGCTTA
7467404 AAATTCATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
29 3 0.09
30 16 0.46
31 16 0.46
ACGTcount: A:0.32, C:0.11, G:0.06, T:0.51
Consensus pattern (30 bp):
AATTTTGCTTATTTAATTATAATTCTAATC
Found at i:7468620 original size:41 final size:41
Alignment explanation
Indices: 7468563--7468645 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
7468553 TTGTAAGTAT
7468563 ACAGGTTAGGTTGTAATATAGATTATTACAACAAAAAAAGA
1 ACAGGTTAGGTTGTAATATAGATTATTACAACAAAAAAAGA
7468604 ACAGGTTAGGTTGTAATATAGATTATTACAACAAAAAAAGA
1 ACAGGTTAGGTTGTAATATAGATTATTACAACAAAAAAAGA
7468645 A
1 A
7468646 GTGTTCCGAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.49, C:0.07, G:0.17, T:0.27
Consensus pattern (41 bp):
ACAGGTTAGGTTGTAATATAGATTATTACAACAAAAAAAGA
Found at i:7471412 original size:15 final size:15
Alignment explanation
Indices: 7471392--7471423 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
7471382 GCACATGGCT
7471392 TGGCACAAGGGTGTG
1 TGGCACAAGGGTGTG
7471407 TGGCACAAGGGTGTG
1 TGGCACAAGGGTGTG
7471422 TG
1 TG
7471424 AGGCCATTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.12, G:0.47, T:0.22
Consensus pattern (15 bp):
TGGCACAAGGGTGTG
Found at i:7488889 original size:54 final size:53
Alignment explanation
Indices: 7488692--7488900 Score: 249
Period size: 53 Copynumber: 3.9 Consensus size: 53
7488682 TTTTCCTTTT
* * * * *
7488692 TGAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTA
1 TGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTA
* **
7488745 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTA
1 TGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTA
* * *
7488798 TTGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA
1 -TG-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTA
* * *
7488853 TAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 T-GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
7488901 ATCTTACCAA
Statistics
Matches: 135, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
52 2 0.01
53 44 0.33
54 44 0.33
55 43 0.32
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
TGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTA
Found at i:7489020 original size:47 final size:47
Alignment explanation
Indices: 7488928--7489042 Score: 119
Period size: 47 Copynumber: 2.4 Consensus size: 47
7488918 GTTCCAAACA
*
7488928 TGGTCTTACATGGTATCCTTGTCTTAGTGCCAATGCCACATCTTGA-T
1 TGGTCTTACATGGTATCCTTATC-TAGTGCCAATGCCACATCTTGACT
* **
7488975 GTGGTCTTACATGG-AGTCCTTAATC-AGTGCCGATGCCATGTCTTGACT
1 -TGGTCTTACATGGTA-TCCTT-ATCTAGTGCCAATGCCACATCTTGACT
* *
7489023 TGGTCTTACACGGGATCCTT
1 TGGTCTTACATGGTATCCTT
7489043 TGTGACAGCC
Statistics
Matches: 58, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
47 36 0.62
48 20 0.34
49 2 0.03
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (47 bp):
TGGTCTTACATGGTATCCTTATCTAGTGCCAATGCCACATCTTGACT
Found at i:7490405 original size:12 final size:12
Alignment explanation
Indices: 7490388--7490413 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7490378 ATTCCGAAGT
7490388 ATATATATATAC
1 ATATATATATAC
7490400 ATATATATATAC
1 ATATATATATAC
7490412 AT
1 AT
7490414 GTATGCCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
ATATATATATAC
Found at i:7490948 original size:27 final size:28
Alignment explanation
Indices: 7490861--7490956 Score: 104
Period size: 27 Copynumber: 3.4 Consensus size: 28
7490851 CATGAGATTG
** * * *
7490861 GCACTAAGTGTGCTGGTTTAAACTGTACA
1 GCACTAAGTGTGCAAGTTT-AATTATATA
*
7490890 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTTAATTATATA
*
7490918 GCACTAAGTGTGCGAG-TTAATTATATA
1 GCACTAAGTGTGCAAGTTTAATTATATA
*
7490945 GCACTGAGTGTG
1 GCACTAAGTGTG
7490957 TGGACTTAAT
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
27 21 0.36
28 20 0.34
29 17 0.29
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTTAATTATATA
Found at i:7490969 original size:27 final size:27
Alignment explanation
Indices: 7490889--7490971 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
7490879 TAAACTGTAC
* * *
7490889 AGCACTAAGTGTGCAAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
*
7490917 AGCACTAAGTGTGCGAGTTAATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
* *
7490944 AGCACTGAGTGTGTGGACTTAA-TATAT
1 AGCACTAAGTGTG-CGACTTAATTATAT
7490971 A
1 A
7490972 CTTTTGAATC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 27 0.56
28 21 0.44
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:7492638 original size:44 final size:44
Alignment explanation
Indices: 7492555--7492639 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
7492545 ATCCTTAACA
* * *
7492555 GTCAATTCCTCCTTAAATGCCATGTTATGAACATGGACTTTTCC
1 GTCAATTCCTCCTTAAATGCCATGGTATCAACATAGACTTTTCC
* *
7492599 GTCAATTCTTCCTTAATTGCCATGGTA-CAACCATAGACTTT
1 GTCAATTCCTCCTTAAATGCCATGGTATCAA-CATAGACTTT
7492640 GAGATATCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 2 0.06
44 33 0.94
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (44 bp):
GTCAATTCCTCCTTAAATGCCATGGTATCAACATAGACTTTTCC
Found at i:7497293 original size:12 final size:13
Alignment explanation
Indices: 7497276--7497313 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
7497266 ATCCTAGAAT
7497276 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
7497288 ATTAAGAACACATA
1 ATTAAGAACA-AGA
7497302 ATTAAGAACAAG
1 ATTAAGAACAAG
7497314 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:7503745 original size:12 final size:13
Alignment explanation
Indices: 7503728--7503765 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
7503718 ATCCTGGAAT
7503728 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
7503740 ATTAAGAACACATA
1 ATTAAGAACA-AGA
7503754 ATTAAGAACAAG
1 ATTAAGAACAAG
7503766 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:7505811 original size:26 final size:27
Alignment explanation
Indices: 7505774--7505826 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
7505764 NNNNNNNNNN
* *
7505774 CAGATACAGATATTGTGGCAGAGCCAC
1 CAGATACAGATAATGTGGCAAAGCCAC
7505801 CAGA-ACAGATAATGTGGCAAAGCCAC
1 CAGATACAGATAATGTGGCAAAGCCAC
7505827 TTAACAGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.38, C:0.23, G:0.25, T:0.15
Consensus pattern (27 bp):
CAGATACAGATAATGTGGCAAAGCCAC
Found at i:7506013 original size:22 final size:21
Alignment explanation
Indices: 7505985--7506049 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
7505975 GCAAATACGT
7505985 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
* *
7506007 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAAT-CAGG
*
7506029 TTGACACAAAGCCATAATCAG
1 TTGGCACAAA-CCATAATCAG
7506050 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:7506535 original size:27 final size:27
Alignment explanation
Indices: 7506505--7506789 Score: 317
Period size: 27 Copynumber: 10.9 Consensus size: 27
7506495 GTTTCTCGGC
* *
7506505 AATTCCACCCTACTA-GGGTATTTTAGT
1 AATTCTACCCTAC-AGGGGTATTTCAGT
* *
7506532 AATTCTGCCCTACAGGGGTATTTCGGT
1 AATTCTACCCTACAGGGGTATTTCAGT
* *
7506559 AATTCTACCCTACAGTGGTATTGC-GAT
1 AATTCTACCCTACAGGGGTATTTCAG-T
* *
7506586 AATTCTACTCTACAGGGGTATTTCGGT
1 AATTCTACCCTACAGGGGTATTTCAGT
7506613 AATTCTACCCTACAGGGGTATTTC-GTT
1 AATTCTACCCTACAGGGGTATTTCAG-T
7506640 AATTCTACCCTACAGGGGTATTTCAGT
1 AATTCTACCCTACAGGGGTATTTCAGT
* *
7506667 AATTCTACCTTACAGGGGTATTGC-GAT
1 AATTCTACCCTACAGGGGTATTTCAG-T
*
7506694 AATTCTACCCTACAGGGGTA-TTCTGGT
1 AATTCTACCCTACAGGGGTATTTC-AGT
7506721 AATTCTACCCTACA-GGG-------GT
1 AATTCTACCCTACAGGGGTATTTCAGT
*
7506740 AATTCTACCCTATAGGGGTATTTCAGT
1 AATTCTACCCTACAGGGGTATTTCAGT
*
7506767 AATTCTACCCTATAGGGGTATTT
1 AATTCTACCCTACAGGGGTATTT
7506790 TATAAACAAA
Statistics
Matches: 226, Mismatches: 16, Indels: 32
0.82 0.06 0.12
Matches are distributed among these distances:
19 15 0.07
20 3 0.01
26 9 0.04
27 196 0.87
28 3 0.01
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
AATTCTACCCTACAGGGGTATTTCAGT
Found at i:7506563 original size:54 final size:54
Alignment explanation
Indices: 7506500--7506789 Score: 350
Period size: 54 Copynumber: 5.5 Consensus size: 54
7506490 ACAAGGTTTC
* * * *
7506500 TCGGCAATTCCACCCTACTA-GGGTATTT-TAGTAATTCTGCCCTACAGGGGTATT
1 TCGGTAATTCTACCCTAC-AGGGGTATTTCGA-TAATTCTACCCTACAGGGGTATT
* * *
7506554 TCGGTAATTCTACCCTACAGTGGTATTGCGATAATTCTACTCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATT
*
7506608 TCGGTAATTCTACCCTACAGGGGTATTTCGTTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATT
* * *
7506662 TCAGTAATTCTACCTTACAGGGGTATTGCGATAATTCTACCCTACAGGGGTA-T
1 TCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATT
*
7506715 TCTGGTAATTCTACCCTACA-GGG------G-TAATTCTACCCTATAGGGGTATT
1 TC-GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATT
* *
7506762 TCAGTAATTCTACCCTATAGGGGTATTT
1 TCGGTAATTCTACCCTACAGGGGTATTT
7506790 TATAAACAAA
Statistics
Matches: 206, Mismatches: 20, Indels: 22
0.83 0.08 0.09
Matches are distributed among these distances:
46 35 0.17
47 7 0.03
53 7 0.03
54 156 0.76
55 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.34
Consensus pattern (54 bp):
TCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATT
Found at i:7506742 original size:19 final size:19
Alignment explanation
Indices: 7506718--7506759 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
7506708 GGGGTATTCT
7506718 GGTAATTCTACCCTACAGG
1 GGTAATTCTACCCTACAGG
*
7506737 GGTAATTCTACCCTATAGG
1 GGTAATTCTACCCTACAGG
7506756 GGTA
1 GGTA
7506760 TTTCAGTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (19 bp):
GGTAATTCTACCCTACAGG
Found at i:7506746 original size:46 final size:46
Alignment explanation
Indices: 7506693--7506786 Score: 145
Period size: 46 Copynumber: 2.0 Consensus size: 46
7506683 GGTATTGCGA
*
7506693 TAATTCTACCCTACAGGGGTA-TTCTGGTAATTCTACCCTACAGGGG
1 TAATTCTACCCTACAGGGGTATTTC-AGTAATTCTACCCTACAGGGG
* *
7506739 TAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTATAGGGG
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGG
7506785 TA
1 TA
7506787 TTTTATAAAC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 41 0.93
47 3 0.07
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (46 bp):
TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGG
Found at i:7506830 original size:27 final size:27
Alignment explanation
Indices: 7506786--7506951 Score: 172
Period size: 27 Copynumber: 6.1 Consensus size: 27
7506776 CTATAGGGGT
* * *
7506786 ATTTTATAAACAAAGGGTATTTTAGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
* * *
7506813 ATTTTACAAACTAGGGGTATTTTTGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
**
7506840 ATTTTGTAAACCAAGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
** *
7506867 ATTTTACAAA-TTAGAGGTATTTTGGTG
1 ATTTTACAAACCAAG-GGTATTTTGGTA
* * * *
7506894 ATTTTATATACCAAGGGTATTTTAGTG
1 ATTTTACAAACCAAGGGTATTTTGGTA
*
7506921 ATTTTACAAACCAGGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
7506948 ATTT
1 ATTT
7506952 GGTAAACTGA
Statistics
Matches: 113, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 2 0.02
27 109 0.96
28 2 0.02
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (27 bp):
ATTTTACAAACCAAGGGTATTTTGGTA
Found at i:7506868 original size:54 final size:54
Alignment explanation
Indices: 7506786--7506951 Score: 242
Period size: 54 Copynumber: 3.1 Consensus size: 54
7506776 CTATAGGGGT
* *
7506786 ATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTTGTA
1 ATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTA
* * * * *
7506840 ATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAATTAGAGGTATTTTGGTG
1 ATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTA
* * *
7506894 ATTTTATATACCAAGGGTATTTTAGTGATTTTACAAACCAGGGGTATTTTGGTA
1 ATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTA
7506948 ATTT
1 ATTT
7506952 GGTAAACTGA
Statistics
Matches: 97, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 97 1.00
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (54 bp):
ATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTA
Found at i:7509017 original size:27 final size:27
Alignment explanation
Indices: 7508975--7509103 Score: 152
Period size: 27 Copynumber: 4.8 Consensus size: 27
7508965 GCTCAGTTAT
* * *
7508975 CAGATACTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
7509002 CAGATATTGTGGCAGAACCATCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
7509029 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* * *
7509055 CAGATATTTGTGGCATAGCCACTAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAGATA
* *
7509083 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
7509104 TTAACAGAAT
Statistics
Matches: 89, Mismatches: 11, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
26 7 0.08
27 75 0.84
28 7 0.08
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:7509298 original size:22 final size:23
Alignment explanation
Indices: 7509262--7509323 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 23
7509252 GCAAATACGT
7509262 TTGGCACACAA-CCATAAT-CAGG
1 TTGGCACA-AAGCCATAATGCAGG
* *
7509284 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGCAGG
*
7509306 TTGACACAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
7509324 TAGAAGGCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
21 3 0.09
22 28 0.85
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGCAGG
Found at i:7514925 original size:27 final size:27
Alignment explanation
Indices: 7514887--7514940 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
7514877 AAAGGATTTA
7514887 TTCATTTAACTTGATCCGTAGAAATCC
1 TTCATTTAACTTGATCCGTAGAAATCC
* **
7514914 TTCATTTGACTTGATTTGTAGAAATCC
1 TTCATTTAACTTGATCCGTAGAAATCC
7514941 CTAAGTTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.41
Consensus pattern (27 bp):
TTCATTTAACTTGATCCGTAGAAATCC
Found at i:7537593 original size:40 final size:40
Alignment explanation
Indices: 7537556--7537725 Score: 254
Period size: 40 Copynumber: 4.3 Consensus size: 40
7537546 GCTACTCGTT
* *
7537556 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
7537596 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
7537636 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
7537676 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
7537715 CAAATGCCTTC
1 CAAATGCCTTC
7537726 AGATCTTAGT
Statistics
Matches: 120, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 32 0.27
40 86 0.72
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:7537740 original size:79 final size:80
Alignment explanation
Indices: 7537556--7537780 Score: 242
Period size: 80 Copynumber: 2.8 Consensus size: 80
7537546 GCTACTCGTT
* * * *
7537556 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTTGGGACTTAACCCG
1 CAAATGCCTTCGAGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
*
7537620 GATTTAGTAACTCGCA
65 GAATTAGTAACTCGCA
* * *
7537636 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
7537700 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
** * * * * * *
7537715 CAAATGCCTTC-AGATCTTAGTCCGGATATGGTCACTTAGCACAAA-ACCTTCGGGACTTAGCCC
1 CAAATGCCTTCGAGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCC
7537778 GGA
64 GGA
7537781 CATCATTCGA
Statistics
Matches: 125, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
78 2 0.02
79 56 0.45
80 65 0.52
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCA
Found at i:7537740 original size:119 final size:120
Alignment explanation
Indices: 7537558--7537780 Score: 274
Period size: 119 Copynumber: 1.9 Consensus size: 120
7537548 TACTCGTTCA
* **
7537558 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTTCAGACTTAACCCGGAT
* * *
7537623 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-ACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
7537678 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCC-TTCAGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTTCAGA-CTTAACCCGG
* * *
7537740 ATATGGTCACTTAGCACAAAACCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAACCTTCGGGACTTAACCCGGA
7537781 CATCATTCGA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
118 5 0.06
119 62 0.71
120 20 0.23
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTTCAGACTTAACCCGGAT
ATAGTAACTTAGCACAAAACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:7538797 original size:56 final size:56
Alignment explanation
Indices: 7538730--7538961 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
7538720 TATTAGTTTA
7538730 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
7538786 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
7538842 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
7538898 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
7538954 TTGCCCAT
1 TTGCCCAT
7538962 CATCCCTTGT
Statistics
Matches: 175, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 175 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:7541672 original size:26 final size:26
Alignment explanation
Indices: 7541643--7541693 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
7541633 AACCATGAGA
7541643 TTAAATAGGATGATATTAGGAGAACT
1 TTAAATAGGATGATATTAGGAGAACT
7541669 TTAAATAGGATGATATTAGGAGAAC
1 TTAAATAGGATGATATTAGGAGAAC
7541694 GGGTTTACCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.43, C:0.04, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAAATAGGATGATATTAGGAGAACT
Found at i:7542253 original size:17 final size:18
Alignment explanation
Indices: 7542233--7542266 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
7542223 TAGAATTGAG
7542233 TTGAAAAAAT-AATTTAT
1 TTGAAAAAATCAATTTAT
7542250 TTGAAAAAATCAATTTA
1 TTGAAAAAATCAATTTA
7542267 ATTAATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.38
Consensus pattern (18 bp):
TTGAAAAAATCAATTTAT
Found at i:7543730 original size:12 final size:12
Alignment explanation
Indices: 7543713--7543742 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7543703 CCCTTTCACT
7543713 ATACATGCATAC
1 ATACATGCATAC
*
7543725 ATACATGCATGC
1 ATACATGCATAC
7543737 ATACAT
1 ATACAT
7543743 ACAAATGGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.27
Consensus pattern (12 bp):
ATACATGCATAC
Found at i:7551614 original size:29 final size:30
Alignment explanation
Indices: 7551566--7551625 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
7551556 GTAACACAGG
*
7551566 GGGGATTTTGCTCTTTTTTTGTGATTCAAGA
1 GGGGATTTT-CTCTTTTTTTGAGATTCAAGA
7551597 GGGGATTTT-TCTTTTTTTGAGATTCAAGA
1 GGGGATTTTCTCTTTTTTTGAGATTCAAGA
7551626 ACAAAAAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 19 0.68
31 9 0.32
ACGTcount: A:0.18, C:0.08, G:0.25, T:0.48
Consensus pattern (30 bp):
GGGGATTTTCTCTTTTTTTGAGATTCAAGA
Found at i:7551753 original size:7 final size:8
Alignment explanation
Indices: 7551736--7551761 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
7551726 TATTCTTTCC
7551736 TTTTTATT
1 TTTTTATT
7551744 TTTTTATT
1 TTTTTATT
7551752 TTTTTATT
1 TTTTTATT
7551760 TT
1 TT
7551762 CCGAATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTTATT
Done.