Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 27 of 167
Found at i:7865241 original size:25 final size:26
Alignment explanation
Indices: 7865142--7865271 Score: 167
Period size: 26 Copynumber: 5.1 Consensus size: 26
7865132 GAGGAAGTGC
*
7865142 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
7865168 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
7865194 AAAATGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* ***
7865220 AAAAGGGCTT-TGCCCCAATTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTG
7865245 AAAAGGGCTT-TGCCCCAG-TTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
7865269 AAA
1 AAA
7865272 GAGGCTAGGC
Statistics
Matches: 89, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
24 6 0.07
25 28 0.31
26 55 0.62
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:7865905 original size:18 final size:18
Alignment explanation
Indices: 7865882--7865916 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7865872 ACTTAGGACG
*
7865882 TGTTTTCAAAACGACACT
1 TGTTTTCAAAACAACACT
*
7865900 TGTTTTCCAAACAACAC
1 TGTTTTCAAAACAACAC
7865917 AACGTTACAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.26, G:0.09, T:0.31
Consensus pattern (18 bp):
TGTTTTCAAAACAACACT
Found at i:7868984 original size:32 final size:33
Alignment explanation
Indices: 7868939--7869004 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
7868929 CGTAGTAAAA
*
7868939 TAAAATAACACAAACCA-TTTTTTCTTTCTTCT
1 TAAAACAACACAAACCATTTTTTTCTTTCTTCT
*
7868971 TAAAACAAGACAAACCATTTTTTTCTTTCTTCT
1 TAAAACAACACAAACCATTTTTTTCTTTCTTCT
7869004 T
1 T
7869005 CAACTTGTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 15 0.48
33 16 0.52
ACGTcount: A:0.33, C:0.21, G:0.02, T:0.44
Consensus pattern (33 bp):
TAAAACAACACAAACCATTTTTTTCTTTCTTCT
Found at i:7870924 original size:4 final size:4
Alignment explanation
Indices: 7870917--7871013 Score: 68
Period size: 4 Copynumber: 24.2 Consensus size: 4
7870907 TATATATATA
* * * * * * * * *
7870917 TGTG TGTG TGTG TGTG TGTG TGTG CGCG CGCG CGCG TGCG TGCG TGCG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
* * * * *
7870965 TGCG TGCG TGCG TGCG TGCG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
7871013 T
1 T
7871014 TGGGTGTTCA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 89 1.00
ACGTcount: A:0.00, C:0.14, G:0.49, T:0.36
Consensus pattern (4 bp):
TGTG
Found at i:7883217 original size:17 final size:17
Alignment explanation
Indices: 7883197--7883256 Score: 50
Period size: 17 Copynumber: 3.5 Consensus size: 17
7883187 GAACTGTGAC
7883197 CTCACCAAAACTGA-GAG
1 CTCACCAAAACT-ACGAG
** *
7883214 CTCATTAACACTACGAG
1 CTCACCAAAACTACGAG
* *
7883231 CTCACCAAGACTACAAG
1 CTCACCAAAACTACGAG
*
7883248 CTCATCAAA
1 CTCACCAAA
7883257 CTTGAGAGCT
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
16 1 0.03
17 32 0.97
ACGTcount: A:0.40, C:0.32, G:0.12, T:0.17
Consensus pattern (17 bp):
CTCACCAAAACTACGAG
Found at i:7884278 original size:75 final size:75
Alignment explanation
Indices: 7884155--7884310 Score: 294
Period size: 75 Copynumber: 2.1 Consensus size: 75
7884145 TATCCTCACT
* *
7884155 AGAAGACTTAAGGGATCTATCAACCATTTCACTCTTATAGCTAATCAATACTCTAGAACAAAGAA
1 AGAAGACTTAAGGGATCTATCAACCATTTCACTCTCATAGCCAATCAATACTCTAGAACAAAGAA
7884220 GGGCAAATAG
66 GGGCAAATAG
7884230 AGAAGACTTAAGGGATCTATCAACCATTTCACTCTCATAGCCAATCAATACTCTAGAACAAAGAA
1 AGAAGACTTAAGGGATCTATCAACCATTTCACTCTCATAGCCAATCAATACTCTAGAACAAAGAA
7884295 GGGCAAATAG
66 GGGCAAATAG
7884305 AGAAGA
1 AGAAGA
7884311 AAAACATGTT
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
75 79 1.00
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (75 bp):
AGAAGACTTAAGGGATCTATCAACCATTTCACTCTCATAGCCAATCAATACTCTAGAACAAAGAA
GGGCAAATAG
Found at i:7884591 original size:42 final size:43
Alignment explanation
Indices: 7884517--7884600 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 43
7884507 GCAAAAATTG
*
7884517 CAAGCAGTTTGGCCATGTAGAGAAAGTATGCAAAAATAAATGT
1 CAAGCAGTTTGGCCATGTAGAGAAAGTATGCAAAAACAAATGT
7884560 CAAGCAGTTTGGCCAT-TAGAGAAAGTATGCAAAAACAAATG
1 CAAGCAGTTTGGCCATGTAGAGAAAGTATGCAAAAACAAATG
7884601 GCAACAAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
42 24 0.60
43 16 0.40
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.21
Consensus pattern (43 bp):
CAAGCAGTTTGGCCATGTAGAGAAAGTATGCAAAAACAAATGT
Found at i:7887886 original size:46 final size:44
Alignment explanation
Indices: 7887782--7887889 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
7887772 TGTCTTTAAC
** * * *
7887782 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
7887826 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
7887872 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
7887890 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:7888265 original size:30 final size:30
Alignment explanation
Indices: 7888229--7888286 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
7888219 CCTCGACTCT
* *
7888229 AACTTTTTCAAAATTATAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
7888259 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
7888287 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.43
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:7888713 original size:40 final size:40
Alignment explanation
Indices: 7888651--7888745 Score: 145
Period size: 40 Copynumber: 2.3 Consensus size: 40
7888641 CTTTTCTTTC
* *
7888651 TTTCTTTCCTTCCTTCCTTCTCTGTTTCGTTTTGCTCTCTG
1 TTTCTTT-CTTTCTCCCTTCTCTGTTTCGTTTTGCTCTCTG
*
7888692 TTTCTTTCTTTCTCCCTTCTCTGTTTTGTTTTGCTCTCTG
1 TTTCTTTCTTTCTCCCTTCTCTGTTTCGTTTTGCTCTCTG
7888732 TTTCTTTTCTTTCT
1 TTTC-TTTCTTTCT
7888746 TTCTTTGTCA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
40 34 0.68
41 16 0.32
ACGTcount: A:0.00, C:0.28, G:0.08, T:0.63
Consensus pattern (40 bp):
TTTCTTTCTTTCTCCCTTCTCTGTTTCGTTTTGCTCTCTG
Found at i:7888770 original size:8 final size:8
Alignment explanation
Indices: 7888759--7888790 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
7888749 TTTGTCATAT
7888759 ATATAATA
1 ATATAATA
7888767 ATATAATA
1 ATATAATA
7888775 ATATAATA
1 ATATAATA
7888783 ATATAATA
1 ATATAATA
7888791 TAAAACATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:7890758 original size:13 final size:13
Alignment explanation
Indices: 7890740--7890767 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
7890730 GATAAAAGAG
7890740 CATATAGAATACC
1 CATATAGAATACC
7890753 CATATAGAATACC
1 CATATAGAATACC
7890766 CA
1 CA
7890768 GAAGAGATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.25, G:0.07, T:0.21
Consensus pattern (13 bp):
CATATAGAATACC
Found at i:7891212 original size:12 final size:12
Alignment explanation
Indices: 7891195--7891219 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7891185 AAATTTGACT
7891195 CTTATATATATA
1 CTTATATATATA
7891207 CTTATATATATA
1 CTTATATATATA
7891219 C
1 C
7891220 ACATAACATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (12 bp):
CTTATATATATA
Found at i:7892459 original size:5 final size:5
Alignment explanation
Indices: 7892449--7892496 Score: 73
Period size: 5 Copynumber: 9.8 Consensus size: 5
7892439 NNNNNNNNNN
7892449 ATAAT ATAAT ATAAT ATAAT ATAAT AT-AT -TAAT AATAAT ATAAT ATAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT ATAAT ATAA
7892497 AAACATAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
3 1 0.03
4 4 0.10
5 31 0.77
6 4 0.10
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:7892505 original size:24 final size:23
Alignment explanation
Indices: 7892449--7892505 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
7892439 NNNNNNNNNN
*
7892449 ATAATATAATATAATATAATATA
1 ATAAAATAATATAATATAATATA
* *
7892472 ATATATTAATAATAATATAATATA
1 ATAAAATAAT-ATAATATAATATA
7892496 A-AAACATAAT
1 ATAAA-ATAAT
7892506 TATTACTTAC
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
23 9 0.33
24 18 0.67
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (23 bp):
ATAAAATAATATAATATAATATA
Found at i:7896410 original size:24 final size:24
Alignment explanation
Indices: 7896362--7896411 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
7896352 GATGTGTTAA
*
7896362 TGAATATATTTATGAACACATAAT
1 TGAATATATTTATGAACACAAAAT
*
7896386 TGAATGATGTTTATGAACA-AAAAT
1 TGAAT-ATATTTATGAACACAAAAT
7896410 TG
1 TG
7896412 TTCATATGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 11 0.48
25 12 0.52
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.36
Consensus pattern (24 bp):
TGAATATATTTATGAACACAAAAT
Found at i:7903378 original size:45 final size:44
Alignment explanation
Indices: 7903328--7903413 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 44
7903318 TCTTTTAGAA
*
7903328 TTCCCTCCATTAAA-TCTATCCAATGAATGCTTGAATCCTTAAGTC
1 TTCCCTCCATTAAATTC-ATCC-ATAAATGCTTGAATCCTTAAGTC
* *
7903373 TTCCCTCCATTAAATTCATCCATAAATGTTTGAATCTTTAA
1 TTCCCTCCATTAAATTCATCCATAAATGCTTGAATCCTTAA
7903414 ATTCTGATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
44 17 0.46
45 18 0.49
46 2 0.05
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.38
Consensus pattern (44 bp):
TTCCCTCCATTAAATTCATCCATAAATGCTTGAATCCTTAAGTC
Found at i:7903624 original size:22 final size:23
Alignment explanation
Indices: 7903599--7903642 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
7903589 CCACAAATTT
7903599 TTTATTT-AAAATGTGAATAAGC
1 TTTATTTAAAAATGTGAATAAGC
7903621 TTTATTTAAAAATGTGAATAAG
1 TTTATTTAAAAATGTGAATAAG
7903643 AAATACTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.43, C:0.02, G:0.14, T:0.41
Consensus pattern (23 bp):
TTTATTTAAAAATGTGAATAAGC
Found at i:7906512 original size:42 final size:42
Alignment explanation
Indices: 7906465--7906572 Score: 171
Period size: 42 Copynumber: 2.6 Consensus size: 42
7906455 GGTAAGCTTT
*
7906465 ATGCTTAGTAAGTCCATATGAAGTTAATAAGTAATTACCCAC
1 ATGCTTAGTAAGTCCATATGAAGTTAATAAGCAATTACCCAC
* * *
7906507 ATGCTTATTAAGTCCATATGAAGTTAATTAGCAATTACCCAT
1 ATGCTTAGTAAGTCCATATGAAGTTAATAAGCAATTACCCAC
*
7906549 ATGCTTAGTAAGTCTATATGAAGT
1 ATGCTTAGTAAGTCCATATGAAGT
7906573 CCATATGAAG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (42 bp):
ATGCTTAGTAAGTCCATATGAAGTTAATAAGCAATTACCCAC
Found at i:7921002 original size:42 final size:41
Alignment explanation
Indices: 7920908--7921051 Score: 128
Period size: 44 Copynumber: 3.4 Consensus size: 41
7920898 GTCCCAAACG
* * * *
7920908 TGGTCTTACATGTAATCAAATATCGATGCCATCGTCCCATACA
1 TGGTCTTACACGAAATCAAATA-CGATGCCAT-GTCCTAGACA
* * *
7920951 GGGTTTTACACGAAACCAAATACGATGCCGATGTCCTAGACA
1 TGGTCTTACACGAAATCAAATACGATGCC-ATGTCCTAGACA
* **
7920993 TGGTCTTACACGTAAATCATAAGT-TGATGCCAATGTCCTAGATG
1 TGGTCTTACACG-AAATCA-AA-TACGATGCC-ATGTCCTAGACA
7921037 TGGTCTTACACGAAA
1 TGGTCTTACACGAAA
7921052 ATACATATCA
Statistics
Matches: 83, Mismatches: 14, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
42 25 0.30
43 27 0.33
44 30 0.36
45 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (41 bp):
TGGTCTTACACGAAATCAAATACGATGCCATGTCCTAGACA
Found at i:7923237 original size:9 final size:9
Alignment explanation
Indices: 7923216--7923255 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
7923206 AAATTAGTTT
*
7923216 TTTTAATAT
1 TTTTAATAA
* *
7923225 TTTTTATCA
1 TTTTAATAA
7923234 TTTTAATAA
1 TTTTAATAA
7923243 TTTTAATAA
1 TTTTAATAA
7923252 TTTT
1 TTTT
7923256 TTAATAGCAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (9 bp):
TTTTAATAA
Found at i:7924145 original size:21 final size:21
Alignment explanation
Indices: 7924098--7924146 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
7924088 CATATTTTTA
*
7924098 TATTTTTATAAAAAAATTATG
1 TATTTTTATAAAAAAATGATG
7924119 TATTTTTATAGAAAAAATGAT-
1 TATTTTTATA-AAAAAATGATG
7924140 T-TTTTTA
1 TATTTTTA
7924147 GTAATTTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 6 0.23
21 11 0.42
22 9 0.35
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (21 bp):
TATTTTTATAAAAAAATGATG
Found at i:7936465 original size:28 final size:28
Alignment explanation
Indices: 7936433--7936487 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
7936423 AACAAATGAC
**
7936433 AAGAACAAGAAATCGTAGAAAAATTAAA
1 AAGAACAAGAAAAAGTAGAAAAATTAAA
7936461 AAGAACAAGAAAAAGTAGAAAAATTAA
1 AAGAACAAGAAAAAGTAGAAAAATTAA
7936488 CCCTACAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.67, C:0.05, G:0.15, T:0.13
Consensus pattern (28 bp):
AAGAACAAGAAAAAGTAGAAAAATTAAA
Found at i:7945218 original size:18 final size:20
Alignment explanation
Indices: 7945176--7945212 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7945166 ATATTTTATG
*
7945176 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
7945195 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
7945213 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:7955265 original size:13 final size:13
Alignment explanation
Indices: 7955247--7955273 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7955237 CGAAATTTTT
7955247 ATAAAAAAATAAA
1 ATAAAAAAATAAA
7955260 ATAAAAAAATAAA
1 ATAAAAAAATAAA
7955273 A
1 A
7955274 AAATTGGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
ATAAAAAAATAAA
Found at i:7957347 original size:46 final size:46
Alignment explanation
Indices: 7957294--7957521 Score: 314
Period size: 46 Copynumber: 5.0 Consensus size: 46
7957284 GCTCTCTGAA
* * *
7957294 ATGAAATGTGTAAGACCATGGTTGAAAGATACCGTGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
7957340 ATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAGCGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
7957386 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
7957432 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
7957478 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
7957522 TCAAAGATAA
Statistics
Matches: 166, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 165 0.99
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:7971086 original size:26 final size:26
Alignment explanation
Indices: 7971048--7971131 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
7971038 CATGAAATTC
7971048 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
7971074 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
7971100 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
7971126 TTATCA
1 TTATCA
7971132 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:7972438 original size:27 final size:27
Alignment explanation
Indices: 7972400--7972467 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
7972390 ATAGTAAACG
* *
7972400 GGTTGCGCCTATGTGACAGGCGCAACT
1 GGTTGAGCCTATCTGACAGGCGCAACT
*
7972427 GGTTGGGCCTATCTGACAGGCGCAACT
1 GGTTGAGCCTATCTGACAGGCGCAACT
7972454 GGTTGAGCCTATCT
1 GGTTGAGCCTATCT
7972468 CAGAAGCGCG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.25
Consensus pattern (27 bp):
GGTTGAGCCTATCTGACAGGCGCAACT
Found at i:7972476 original size:27 final size:27
Alignment explanation
Indices: 7972400--7972483 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 27
7972390 ATAGTAAACG
* * * *
7972400 GGTTGCGCCTATGTGACAGGCGCAACT
1 GGTTGAGCCTATCTCACAAGCGCAACT
* * *
7972427 GGTTGGGCCTATCTGACAGGCGCAACT
1 GGTTGAGCCTATCTCACAAGCGCAACT
* *
7972454 GGTTGAGCCTATCTCAGAAGCGCGACT
1 GGTTGAGCCTATCTCACAAGCGCAACT
7972481 GGT
1 GGT
7972484 AAGGCCCACA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.19, C:0.25, G:0.33, T:0.23
Consensus pattern (27 bp):
GGTTGAGCCTATCTCACAAGCGCAACT
Found at i:7978802 original size:24 final size:22
Alignment explanation
Indices: 7978767--7978810 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 22
7978757 GAAAACATTA
7978767 AAAATAAGTACATAATATATATGT
1 AAAATAAGTAC--AATATATATGT
7978791 AAAATATA-TACAATATATAT
1 AAAATA-AGTACAATATATAT
7978811 CTATATTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 9 0.47
24 9 0.47
25 1 0.05
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.34
Consensus pattern (22 bp):
AAAATAAGTACAATATATATGT
Found at i:7979094 original size:3 final size:3
Alignment explanation
Indices: 7979086--7979118 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
7979076 AGTTAAGAAA
7979086 AAT AAT AAT AAT AAT AAT AAT AAT AAT AGAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AA
7979119 AAAGAAAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:7979230 original size:22 final size:22
Alignment explanation
Indices: 7979197--7979260 Score: 60
Period size: 23 Copynumber: 2.9 Consensus size: 22
7979187 TGCTAATAAA
*
7979197 TAAT-AAACATAATAATGATAG
1 TAATAAAATATAATAATGATAG
7979218 TAATAAAATATAATAGCAT-ATAG
1 TAATAAAATATAATA--ATGATAG
* *
7979241 TATTAAAATTAAAATAATGA
1 TAATAAAA-TATAATAATGA
7979261 GAAAAAGTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
21 4 0.11
22 11 0.31
23 12 0.34
24 8 0.23
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.31
Consensus pattern (22 bp):
TAATAAAATATAATAATGATAG
Found at i:7979917 original size:13 final size:13
Alignment explanation
Indices: 7979899--7979923 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7979889 TCGTATTTAT
7979899 AAAAAAATAAACA
1 AAAAAAATAAACA
7979912 AAAAAAATAAAC
1 AAAAAAATAAAC
7979924 TAAAGATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (13 bp):
AAAAAAATAAACA
Found at i:7980904 original size:54 final size:54
Alignment explanation
Indices: 7980822--7981057 Score: 391
Period size: 54 Copynumber: 4.3 Consensus size: 54
7980812 GTGATCCTGA
*
7980822 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAG
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAG
* *
7980876 GCTCAACTCACTTCCCGCAATATGAGTTGATTTTTTTTGAAAAACAAAAATTAAAAG
1 GCTCAACTCACTTCTCGCAATATGAGTTGA---TTTTTGAAAAACAGAAATTAAAAG
*
7980933 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAG
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAG
*
7980987 GCTCAACTCACTTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAG
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAG
*
7981041 GCTCAACTCACCTCTCG
1 GCTCAACTCACTTCTCG
7981058 TATATCCTCG
Statistics
Matches: 169, Mismatches: 10, Indels: 6
0.91 0.05 0.03
Matches are distributed among these distances:
54 118 0.70
57 51 0.30
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.30
Consensus pattern (54 bp):
GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAG
Found at i:7981016 original size:111 final size:108
Alignment explanation
Indices: 7980822--7981057 Score: 400
Period size: 111 Copynumber: 2.2 Consensus size: 108
7980812 GTGATCCTGA
**
7980822 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCAC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCAC
*
7980887 TTCCCGCAATATGAGTTGATTTTTTTTGAAAAACAAAAATTAAAAG
66 TTCCCACAATATGAGTTGA---TTTTTGAAAAACAAAAATTAAAAG
7980933 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCAC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCAC
* *
7980998 TTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAG
66 TTCCCACAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAG
7981041 GCTCAACTCACCTCTCG
1 GCTCAACTCACCTCTCG
7981058 TATATCCTCG
Statistics
Matches: 120, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
108 40 0.33
111 80 0.67
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.30
Consensus pattern (108 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCAC
TTCCCACAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAG
Found at i:7981334 original size:74 final size:74
Alignment explanation
Indices: 7981213--7981351 Score: 235
Period size: 74 Copynumber: 1.9 Consensus size: 74
7981203 TAAAAGGCTC
* *
7981213 AAATTGAAAATACATCAGCGTGCTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACATCAGCGTGCTCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
7981278 GACAAACAG
66 GACAAACAG
*
7981287 AAATTGAAAATACCTCAGCGTG-TCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACATCAGCGTGCT-CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
7981351 T
65 T
7981352 TGATTTTTTT
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
73 1 0.02
74 60 0.98
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (74 bp):
AAATTGAAAATACATCAGCGTGCTCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GACAAACAG
Found at i:7981379 original size:14 final size:14
Alignment explanation
Indices: 7981360--7981394 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7981350 TTTGATTTTT
*
7981360 TTGAAAAACATAAA
1 TTGAAAAACAGAAA
*
7981374 TTGAAAAACAGAAT
1 TTGAAAAACAGAAA
7981388 TTGAAAA
1 TTGAAAA
7981395 TACCTCAGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.06, G:0.11, T:0.23
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:7981459 original size:87 final size:87
Alignment explanation
Indices: 7981351--7981623 Score: 447
Period size: 87 Copynumber: 3.1 Consensus size: 87
7981341 GTTGATTTTT
* * * ** * * *
7981351 TTGATTTTTTTGAAAAACATAAATTGAAAAACAGAATTTGAAAATACCTCAGTGTGTCCTGAGGC
1 TTGATTTTTTTG--GAACATAAATTAAAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGC
*
7981416 TCAACTCACCTCTCGCAATATGAG
64 TCAACTCACCTCTCTCAATATGAG
7981440 TTGATTTTTTTGGAACATAAATTAAAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCTC
1 TTGATTTTTTTGGAACATAAATTAAAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCTC
7981505 AACTCACCTCTCTCAATATGAG
66 AACTCACCTCTCTCAATATGAG
7981527 TTGATTTTTTTGGAACATAAATTAAAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCTC
1 TTGATTTTTTTGGAACATAAATTAAAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCTC
7981592 AACTCACCTCTCTCAATATGAG
66 AACTCACCTCTCTCAATATGAG
7981614 TTGATTTTTT
1 TTGATTTTTT
7981624 GACAAACAGA
Statistics
Matches: 175, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
87 163 0.93
89 12 0.07
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (87 bp):
TTGATTTTTTTGGAACATAAATTAAAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCTC
AACTCACCTCTCTCAATATGAG
Found at i:7981787 original size:89 final size:88
Alignment explanation
Indices: 7981622--7982212 Score: 528
Period size: 89 Copynumber: 6.9 Consensus size: 88
7981612 AGTTGATTTT
* * *
7981622 TTGACAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
7981687 GTTGATTTTTTTGAAAAACATAAA
66 GTTGATTTTTTTG-AAAACATAAA
* * * * *
7981711 TTGAAAAATAGAATTTGAAAATACTTCAGCGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
7981776 GTTGATTTTTTTGAAAAACAAAAA
66 GTTGATTTTTTTG-AAAACATAAA
** *** * * * * * *
7981800 TTGAAAATACCTCAGCGTG----T-CCTGAG-GT-T-C--A-ACTCACCTCTCGCAATAT-G-AG
1 TTGAAAA-A-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAC-C--TCTCGCAA
**
7981852 T-TGA-TT--TTTTTGA---AACATAAA
61 TATGAGTTGATTTTTTTGAAAACATAAA
* * * * *
7981873 TTAAAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
7981938 GTTGATTTTTTTG-AAACATAAA
66 GTTGATTTTTTTGAAAACATAAA
* * * * *
7981960 TTAAAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
7982025 GTTGATTTTTTTGAAACACATAAA
66 GTTGATTTTTTTGAAA-ACATAAA
* * * * * *
7982049 TTGAAAAGCATAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
7982114 GTTG--TTTTCTGAAAACAGAAA
66 GTTGATTTTTTTGAAAACATAAA
*
7982135 TTTGAAAAACAGAAATTGAAAATACCTCAGCACGTGGGCC-GAGGCTCAACTCACCTCTCGCAAT
1 -TTGAAAAACAGAAATTGAAAATACCTCAG--CGT-GTCCTGAGGCTCAACTCACCTCTCGCAAT
*
7982199 ATGAGTTGAATTTT
62 ATGAGTTGATTTTT
7982213 GAAAGACAGA
Statistics
Matches: 410, Mismatches: 60, Indels: 62
0.77 0.11 0.12
Matches are distributed among these distances:
71 4 0.01
72 1 0.00
73 13 0.03
75 1 0.00
76 5 0.01
77 7 0.02
79 5 0.01
80 12 0.03
81 8 0.02
82 12 0.03
83 4 0.01
84 1 0.00
85 7 0.02
86 10 0.02
87 122 0.30
88 2 0.00
89 186 0.45
90 3 0.01
91 7 0.02
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.28
Consensus pattern (88 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTGAAAACATAAA
Found at i:7981834 original size:75 final size:75
Alignment explanation
Indices: 7981711--7981866 Score: 249
Period size: 75 Copynumber: 2.1 Consensus size: 75
7981701 AAAACATAAA
* * * * *
7981711 TTGAAAAATAGAATTTGAAAATACTTCAGCGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGA
7981776 GTTGATTTTT
66 GTTGATTTTT
* *
7981786 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGA
7981851 GTTGATTTTT
66 GTTGATTTTT
7981861 TTGAAA
1 TTGAAA
7981867 CATAAATTAA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (75 bp):
TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:7981886 original size:87 final size:88
Alignment explanation
Indices: 7981789--7982212 Score: 588
Period size: 87 Copynumber: 4.8 Consensus size: 88
7981779 GATTTTTTTG
* *
7981789 AAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
7981854 GATTTTTTTG-AAACATAAATTA
66 GATTTTTTTGAAAACATAAATTA
* *
7981876 AAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
7981941 GATTTTTTTG-AAACATAAATTA
66 GATTTTTTTGAAAACATAAATTA
* *
7981963 AAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
7982028 GATTTTTTTGAAACACATAAATTG
66 GATTTTTTTGAAA-ACATAAATTA
* * * * * * *
7982052 AAAAGCATAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGTAATATGAGTT
1 AAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
7982117 G--TTTTCTGAAAACAGAAATTTG
66 GATTTTTTTGAAAACATAAA-TTA
* *
7982139 AAAAACAGAAATTGAAAATACCTCAGCACGTGGGCC-GAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAAAAATTGAAAATACCTCAG--CGT-GCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
7982203 GTTGAATTTT
63 GTTGATTTTT
7982213 GAAAGACAGA
Statistics
Matches: 306, Mismatches: 23, Indels: 12
0.90 0.07 0.04
Matches are distributed among these distances:
86 6 0.02
87 193 0.63
88 2 0.01
89 99 0.32
90 2 0.01
91 4 0.01
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (88 bp):
AAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTGAAAACATAAATTA
Found at i:7981958 original size:499 final size:498
Alignment explanation
Indices: 7981149--7982142 Score: 1477
Period size: 499 Copynumber: 2.0 Consensus size: 498
7981139 TGGCATGTGA
* *
7981149 TCCTGAGCTCAACTCACTTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCA
1 TCCTGAGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTAAAA-GATCA
*
7981214 AATTGAAAATACATCAGCGTGCTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
65 AATTGAAAATACATCAGCGTGCTTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
* *
7981279 ACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTT
130 AAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGA--T
* * ** * *
7981344 GATTTTTTTGATTTTTTTGAAAAACATAAATTGAAAAACAGAATTTGAAAATACCTCAGTGTGTC
193 G-----TTTGATTTTTTTG-AAAACATAAATTAAAAAACAAAAACTGAAAATACCTCAGCGTGCC
*
7981409 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAACATAAATTAAAAAACAAAA
252 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTAAAAAACAAAA
*
7981474 ACTGAACATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCTCAATATGAGTTGATTTTTTTG
317 ACTGAACATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* * * *
7981539 -GA-ACATAAATTAAAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCTCAACTCACCTC
382 AAACACATAAATTAAAAAACAAAAACTGAAAATACCTCAACATGCCCTGAGGCTCAACTCACCTC
*
7981602 TC-TCAATATGAGTTGATTTTTTGACAAACAGAAA-TTGAAAATACCTCAGCATG
447 TCGT-AATATGAGTTG-TTTTCTGA-AAACAGAAATTTGAAAATACCTCAGCATG
*
7981655 TCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAAACATAAATTGAAAA-A
1 TCCTGA-GCTCAACTCACCTCTCACAATATGAGTTGA--TTTTTGAAAAACAGAAATT-AAAAGA
*
7981719 T-AGAATTTGAAAATACTTCAGCGTG-TCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAT
62 TCA-AA-TTGAAAATACATCAGCGTGCT-TTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-
* *
7981782 TTTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTCGCAAT
123 TTTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAAT
*
7981847 ATGA-G-TTGATTTTTTTG-AAACATAAATTAAAAAACAAAAACTGAACATACCTCAGCGTGCCC
188 ATGATGTTTGATTTTTTTGAAAACATAAATTAAAAAACAAAAACTGAAAATACCTCAGCGTGCCC
7981909 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTAAAAAACAAAAA
253 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTAAAAAACAAAAA
7981974 CTGAACATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
318 CTGAACATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
* * * * * *
7982039 AACACATAAATTGAAAAGCATAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCT
383 AACACATAAATTAAAAAACAAAAACTGAAAATACCTCAACATGCCCTGAGGCTCAACTCACCTCT
7982104 CGTAATATGAGTTGTTTTCTGAAAACAGAAATTTGAAAA
448 CGTAATATGAGTTGTTTTCTGAAAACAGAAATTTGAAAA
7982143 ACAGAAATTG
Statistics
Matches: 447, Mismatches: 29, Indels: 30
0.88 0.06 0.06
Matches are distributed among these distances:
499 174 0.39
500 15 0.03
501 77 0.17
502 1 0.00
506 6 0.01
507 31 0.07
508 4 0.01
509 70 0.16
510 69 0.15
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.29
Consensus pattern (498 bp):
TCCTGAGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGATCAA
ATTGAAAATACATCAGCGTGCTTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
AAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGATGTT
TGATTTTTTTGAAAACATAAATTAAAAAACAAAAACTGAAAATACCTCAGCGTGCCCTGAGGCTC
AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTAAAAAACAAAAACTGAACAT
ACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACACATA
AATTAAAAAACAAAAACTGAAAATACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGTAATAT
GAGTTGTTTTCTGAAAACAGAAATTTGAAAATACCTCAGCATG
Found at i:7981985 original size:412 final size:415
Alignment explanation
Indices: 7981374--7982212 Score: 1287
Period size: 412 Copynumber: 2.0 Consensus size: 415
7981364 AAAACATAAA
* * *
7981374 TTGAAAAACAGAATTTGAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
7981439 GTTGATTTTTTTGGAACATAAATTAAAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCT
66 GTTGATTTTTTTGAAACATAAATTAAAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCT
* *
7981504 CAACTCACCTCTCTCAATATGAGTTGATTTTTTTGGAACATAAATTAAAAAACAAAAACTGAACA
131 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTAAAAAACAAAAACTGAACA
*
7981569 TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCTCAATATGAGTTGA-TTTTTTG-AC-AAA-
196 TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAACAAAAG
*
7981630 CAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTT
261 CAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTG--TT
* * * * * * *
7981695 TTTTGAAAAACATAAA-TTGAAAAATAGAATTTGAAAATACTTCAG-CGT-GTCTTGAAGCTCAA
324 TTCTG-AAAACAGAAATTTGAAAAACAGAAATTGAAAATACCTCAGACGTGGGC-CGAAGCTCAA
*
7981757 CTCACCTCTCGCAATATGAGTTGATTTTT
387 CTCACCTCTCGCAATATGAGTTGAATTTT
*
7981786 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
7981851 GTTGATTTTTTTGAAACATAAATTAAAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCT
66 GTTGATTTTTTTGAAACATAAATTAAAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCT
7981916 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTAAAAAACAAAAACTGAACA
131 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTAAAAAACAAAAACTGAACA
7981981 TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACACAT
196 TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG--A-AC--
* * **
7982046 AAATTGAAAAGCATAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGTAATA
256 ------AAAAGCAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCACAATA
7982111 TGAGTTGTTTTCTGAAAACAGAAATTTGAAAAACAGAAATTGAAAATACCTCAGCACGTGGGCCG
315 TGAGTTGTTTTCTGAAAACAGAAATTTGAAAAACAGAAATTGAAAATACCTCAG-ACGTGGGCCG
*
7982176 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
379 AAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
7982213 GAAAGACAGA
Statistics
Matches: 386, Mismatches: 22, Indels: 23
0.90 0.05 0.05
Matches are distributed among these distances:
412 236 0.61
413 7 0.02
417 2 0.01
424 9 0.02
425 32 0.08
426 3 0.01
427 95 0.25
428 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (415 bp):
TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTGAAACATAAATTAAAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTAAAAAACAAAAACTGAACA
TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAACAAAAG
CAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGTTTT
CTGAAAACAGAAATTTGAAAAACAGAAATTGAAAATACCTCAGACGTGGGCCGAAGCTCAACTCA
CCTCTCGCAATATGAGTTGAATTTT
Found at i:7982054 original size:14 final size:14
Alignment explanation
Indices: 7982043--7982069 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7982033 TTTTGAAACA
7982043 CATAAATTGAAAAG
1 CATAAATTGAAAAG
7982057 CATAAATTGAAAA
1 CATAAATTGAAAA
7982070 TACCTCAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.07, G:0.11, T:0.22
Consensus pattern (14 bp):
CATAAATTGAAAAG
Found at i:7982145 original size:15 final size:14
Alignment explanation
Indices: 7982125--7982156 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
7982115 TTGTTTTCTG
7982125 AAAACAGAAATTTGA
1 AAAACAGAAA-TTGA
7982140 AAAACAGAAATTGA
1 AAAACAGAAATTGA
7982154 AAA
1 AAA
7982157 TACCTCAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.66, C:0.06, G:0.12, T:0.16
Consensus pattern (14 bp):
AAAACAGAAATTGA
Found at i:7982162 original size:176 final size:174
Alignment explanation
Indices: 7981785--7982212 Score: 592
Period size: 176 Copynumber: 2.4 Consensus size: 174
7981775 AGTTGATTTT
* *
7981785 TTTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATATG
1 TTTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
* * *
7981850 AGTTGATTTTTTTGAAACATAAATTAAAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGC
66 AGTTGATTTTTTTGAAACATAAATTAAAAAACAAAAACTGAAAATACCTCAACATGCCCTGAGGC
* *
7981915 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAA
131 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTCTGAAACAGAAA
* * *
7981960 -TTAAAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
* * * * * *
7982024 AGTTGATTTTTTTGAAACACATAAATTGAAAAGCATAAATTGAAAATACCTCAACATGTCTTGAG
66 AGTTGATTTTTTTG-AA-ACATAAATTAAAAAACAAAAACTGAAAATACCTCAACATGCCCTGAG
*
7982089 GCTCAACTCACCTCTCGTAATATGAGTTG-TTTTCTGAAAACAGAAA
129 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTG-AAACAGAAA
* *
7982135 TTTGAAAAACAGAAATTGAAAATACCTCAGCACGTGGGCC-GAGGCTCAACTCACCTCTCGCAAT
1 TTTGAAAAACAAAAATTGAAAATACCTCAG--CGT-GCCCTGAGGCTCAACTCACCTCTCGCAAT
*
7982199 ATGAGTTGAATTTT
63 ATGAGTTGATTTTT
7982213 GAAAGACAGA
Statistics
Matches: 223, Mismatches: 23, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
174 79 0.35
175 10 0.04
176 91 0.41
178 40 0.18
179 3 0.01
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (174 bp):
TTTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTGAAACATAAATTAAAAAACAAAAACTGAAAATACCTCAACATGCCCTGAGGC
TCAACTCACCTCTCGCAATATGAGTTGATTTTCTGAAACAGAAA
Found at i:7993552 original size:4 final size:4
Alignment explanation
Indices: 7993543--7993573 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
7993533 TGGGATATGC
7993543 AATG AATG AATG AATG AATG AATG AATG AAT
1 AATG AATG AATG AATG AATG AATG AATG AAT
7993574 ACATAAATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.23, T:0.26
Consensus pattern (4 bp):
AATG
Found at i:7997467 original size:24 final size:22
Alignment explanation
Indices: 7997432--7997475 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 22
7997422 GAAAACATTA
7997432 AAAATAAGTACATAATATATATGT
1 AAAATAAGTAC--AATATATATGT
7997456 AAAATATA-TACAATATATAT
1 AAAATA-AGTACAATATATAT
7997476 CTATATTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 9 0.47
24 9 0.47
25 1 0.05
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.34
Consensus pattern (22 bp):
AAAATAAGTACAATATATATGT
Found at i:7997686 original size:19 final size:20
Alignment explanation
Indices: 7997662--7997702 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
7997652 TTTAAAAATG
7997662 TACATAATAT-ATATATACA
1 TACATAATATGATATATACA
*
7997681 TACATAATATGATATTTACA
1 TACATAATATGATATATACA
7997701 TA
1 TA
7997703 ATGTATACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.49, C:0.10, G:0.02, T:0.39
Consensus pattern (20 bp):
TACATAATATGATATATACA
Found at i:7997811 original size:23 final size:23
Alignment explanation
Indices: 7997748--7997814 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 23
7997738 AATACTACAT
*
7997748 AAATATATACGCATACATATTAAA
1 AAATATATATGCATA-ATATTAAA
* **
7997772 AATATATACATATATAATATTAAA
1 AA-ATATATATGCATAATATTAAA
*
7997796 AAATGTATATGCATAATAT
1 AAATATATATGCATAATAT
7997815 GTATGAAAAC
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
23 13 0.38
24 12 0.35
25 9 0.26
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.34
Consensus pattern (23 bp):
AAATATATATGCATAATATTAAA
Found at i:7998498 original size:22 final size:22
Alignment explanation
Indices: 7998465--7998528 Score: 60
Period size: 23 Copynumber: 2.9 Consensus size: 22
7998455 TGCTAATAAA
*
7998465 TAAT-AAACATAATAATGATAG
1 TAATAAAATATAATAATGATAG
7998486 TAATAAAATATAATAGCAT-ATAG
1 TAATAAAATATAATA--ATGATAG
* *
7998509 TATTAAAATTAAAATAATGA
1 TAATAAAA-TATAATAATGA
7998529 GAAAAAGTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
21 4 0.11
22 11 0.31
23 12 0.34
24 8 0.23
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.31
Consensus pattern (22 bp):
TAATAAAATATAATAATGATAG
Found at i:8000813 original size:19 final size:19
Alignment explanation
Indices: 8000789--8000838 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 19
8000779 AAATGGCAAA
8000789 AAAGTTATTACATAAATAC
1 AAAGTTATTACATAAATAC
* *
8000808 AAAGTTGACTATATAAATAC
1 AAAGTT-ATTACATAAATAC
*
8000828 AAAGTCATTAC
1 AAAGTTATTAC
8000839 GACAGTAGAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.50, C:0.12, G:0.08, T:0.30
Consensus pattern (19 bp):
AAAGTTATTACATAAATAC
Found at i:8000916 original size:33 final size:33
Alignment explanation
Indices: 8000836--8000925 Score: 81
Period size: 33 Copynumber: 2.7 Consensus size: 33
8000826 ACAAAGTCAT
* ** * *
8000836 TACGACAGTAGATATGGGCCGGGAGGAGTAGAG
1 TACGACGGTAGATACAGACCGGAAGGAGTAGAG
* *
8000869 TACGACGGTGGATACAGACCGGAAGGAGTGGAG
1 TACGACGGTAGATACAGACCGGAAGGAGTAGAG
** * *
8000902 TACGGTGGTAGATACTGGCCGGAA
1 TACGACGGTAGATACAGACCGGAA
8000926 AGAGCGAAGT
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.29, C:0.14, G:0.41, T:0.16
Consensus pattern (33 bp):
TACGACGGTAGATACAGACCGGAAGGAGTAGAG
Found at i:8002360 original size:39 final size:39
Alignment explanation
Indices: 8002285--8002360 Score: 125
Period size: 39 Copynumber: 1.9 Consensus size: 39
8002275 GGAGTGATGG
* **
8002285 TGCACTCCCCGCACGGCAAATGAAATGTGTGGGTCTCAT
1 TGCACTCCCCGCACGACAAATGAAATGTGTAAGTCTCAT
8002324 TGCACTCCCCGCACGACAAATGAAATGTGTAAGTCTC
1 TGCACTCCCCGCACGACAAATGAAATGTGTAAGTCTC
8002361 CGGACGCCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (39 bp):
TGCACTCCCCGCACGACAAATGAAATGTGTAAGTCTCAT
Found at i:8003828 original size:22 final size:24
Alignment explanation
Indices: 8003796--8003839 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
8003786 GATTCATTAA
*
8003796 TTTTTAGTTAT-TT-TAGTTTGTG
1 TTTTTAATTATGTTATAGTTTGTG
8003818 TTTTTAATTATGTTATAGTTTG
1 TTTTTAATTATGTTATAGTTTG
8003840 CACATCATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 2 0.11
24 7 0.37
ACGTcount: A:0.18, C:0.00, G:0.16, T:0.66
Consensus pattern (24 bp):
TTTTTAATTATGTTATAGTTTGTG
Found at i:8003917 original size:34 final size:34
Alignment explanation
Indices: 8003879--8003975 Score: 81
Period size: 29 Copynumber: 3.1 Consensus size: 34
8003869 TAAAGTCATG
8003879 CATTATGTAACTTTCATGTTAGTTAAGTTCGCAT
1 CATTATGTAACTTTCATGTTAGTTAAGTTCGCAT
* *
8003913 CATTA---AA--TT-AAGTCAAGTT-AGTT----T
1 CATTATGTAACTTTCATGT-TAGTTAAGTTCGCAT
*
8003937 AATTATGTAACTTTCATGTTAGTTAAGTTCGCAT
1 CATTATGTAACTTTCATGTTAGTTAAGTTCGCAT
8003971 CATTA
1 CATTA
8003976 AATTAAGTCA
Statistics
Matches: 45, Mismatches: 6, Indels: 24
0.60 0.08 0.32
Matches are distributed among these distances:
24 5 0.11
27 2 0.04
28 7 0.16
29 12 0.27
30 7 0.16
31 2 0.04
34 10 0.22
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.43
Consensus pattern (34 bp):
CATTATGTAACTTTCATGTTAGTTAAGTTCGCAT
Found at i:8003957 original size:25 final size:25
Alignment explanation
Indices: 8003929--8004023 Score: 66
Period size: 25 Copynumber: 3.5 Consensus size: 25
8003919 ATTAAGTCAA
8003929 GTTAGTTTAATTATGTAACTTTCAT
1 GTTAGTTTAATTATGTAACTTTCAT
* * *
8003954 GTTAG-TTAAGTTCGCATCATTAAATTAAGTCAA
1 GTTAGTTTAA-TT---AT--GTAACTT---TCAT
8003987 GTTAGTTTAATTATGTAACTTTCAT
1 GTTAGTTTAATTATGTAACTTTCAT
*
8004012 GTTAGTTAAATT
1 GTTAGTTTAATT
8004024 TGCATTTCAA
Statistics
Matches: 53, Mismatches: 7, Indels: 20
0.66 0.09 0.25
Matches are distributed among these distances:
24 4 0.08
25 21 0.40
28 7 0.13
30 7 0.13
33 10 0.19
34 4 0.08
ACGTcount: A:0.32, C:0.08, G:0.14, T:0.46
Consensus pattern (25 bp):
GTTAGTTTAATTATGTAACTTTCAT
Found at i:8003970 original size:58 final size:58
Alignment explanation
Indices: 8003880--8004020 Score: 282
Period size: 58 Copynumber: 2.4 Consensus size: 58
8003870 AAAGTCATGC
8003880 ATTATGTAACTTTCATGTTAGTTAAGTTCGCATCATTAAATTAAGTCAAGTTAGTTTA
1 ATTATGTAACTTTCATGTTAGTTAAGTTCGCATCATTAAATTAAGTCAAGTTAGTTTA
8003938 ATTATGTAACTTTCATGTTAGTTAAGTTCGCATCATTAAATTAAGTCAAGTTAGTTTA
1 ATTATGTAACTTTCATGTTAGTTAAGTTCGCATCATTAAATTAAGTCAAGTTAGTTTA
8003996 ATTATGTAACTTTCATGTTAGTTAA
1 ATTATGTAACTTTCATGTTAGTTAA
8004021 ATTTGCATTT
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (58 bp):
ATTATGTAACTTTCATGTTAGTTAAGTTCGCATCATTAAATTAAGTCAAGTTAGTTTA
Found at i:8017178 original size:40 final size:40
Alignment explanation
Indices: 8016996--8017218 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
8016986 TCCTCGTTCA
* * * * *
8016996 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
8017035 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
8017075 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
8017115 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
8017155 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
8017195 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
8017219 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:8017227 original size:41 final size:41
Alignment explanation
Indices: 8017150--8017227 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
8017140 TTAGTATCTC
* * *
8017150 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
8017191 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
8017228 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:8021232 original size:24 final size:24
Alignment explanation
Indices: 8021205--8021255 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
8021195 TTAAGCTTGG
*
8021205 GTTGGGCCTTTGTGACTCGTATCA
1 GTTGGGCCTTTATGACTCGTATCA
8021229 GTTGGGCCTTTATGACTCGTATCA
1 GTTGGGCCTTTATGACTCGTATCA
8021253 GTT
1 GTT
8021256 CTTGTTTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.14, C:0.20, G:0.27, T:0.39
Consensus pattern (24 bp):
GTTGGGCCTTTATGACTCGTATCA
Found at i:8026298 original size:50 final size:50
Alignment explanation
Indices: 8026239--8026338 Score: 182
Period size: 50 Copynumber: 2.0 Consensus size: 50
8026229 TGGAAATTCA
* *
8026239 AAGTTCTAATCTTTTAATTTTTCTATTTCGTTTTGGATTTGATTGTTTAG
1 AAGTTCTAATCTTTTAATTTTTCTATTTCGTTTCGGATCTGATTGTTTAG
8026289 AAGTTCTAATCTTTTAATTTTTCTATTTCGTTTCGGATCTGATTGTTTAG
1 AAGTTCTAATCTTTTAATTTTTCTATTTCGTTTCGGATCTGATTGTTTAG
8026339 GGTTTTCGTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.20, C:0.10, G:0.14, T:0.56
Consensus pattern (50 bp):
AAGTTCTAATCTTTTAATTTTTCTATTTCGTTTCGGATCTGATTGTTTAG
Found at i:8029780 original size:33 final size:33
Alignment explanation
Indices: 8029683--8029781 Score: 153
Period size: 33 Copynumber: 3.0 Consensus size: 33
8029673 CTTCTTCTTG
* *
8029683 ACATTTCAGCTCCTGTCCAGCAACAAAACACCC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
* *
8029716 ACATTCCAGCTCCTGTCTAGCAGCAAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
*
8029749 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
8029782 CCACTCAGTC
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.31, C:0.39, G:0.10, T:0.19
Consensus pattern (33 bp):
ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
Found at i:8034264 original size:39 final size:39
Alignment explanation
Indices: 8034204--8034280 Score: 100
Period size: 39 Copynumber: 2.0 Consensus size: 39
8034194 TTGGTTTGCG
** * *
8034204 ATATGTTCTTACTTATATAATGATTTGCTACTGTTTTTC
1 ATATGTTCTTAAATATATAATGATTTACTACTATTTTTC
* *
8034243 ATATGTTCTTAAATATCTAATGTTTTACTACTATTTTT
1 ATATGTTCTTAAATATATAATGATTTACTACTATTTTT
8034281 AAGTGTAGTT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.26, C:0.12, G:0.08, T:0.55
Consensus pattern (39 bp):
ATATGTTCTTAAATATATAATGATTTACTACTATTTTTC
Found at i:8034328 original size:108 final size:109
Alignment explanation
Indices: 8034138--8034342 Score: 279
Period size: 108 Copynumber: 1.9 Consensus size: 109
8034128 CTCATTTTAA
* * * * *
8034138 GTTCTTAAATAAATACTGTTTGGCTAGTATTTTATAAGTGTTGTTTTGGTTAAGTTTTGGTTTGC
1 GTTCTTAAATAAATAATGTTTGACTACTATTTTATAAGTGTAGTTTTGGTTAAGTGTTGGTTTGC
* **
8034203 GATATGTTCTTACTTATATAATGATTTGCTACTGTTTTTCATAT
66 CATATGCCCTTACTTATATAATGATTTGCTACTGTTTTTCATAT
** * *
8034247 GTTCTTAAATATCTAATGTTTTACTACTATTTT-TAAGTGTAGTTTTGGTTATA-TGTTGGTTTT
1 GTTCTTAAATAAATAATGTTTGACTACTATTTTATAAGTGTAGTTTTGGTTA-AGTGTTGGTTTG
8034310 CCATATGCCCTTACTTATATAATGATTTGCTAC
65 CCATATGCCCTTACTTATATAATGATTTGCTAC
8034343 CATTTTAAAT
Statistics
Matches: 83, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
108 55 0.66
109 28 0.34
ACGTcount: A:0.23, C:0.10, G:0.16, T:0.51
Consensus pattern (109 bp):
GTTCTTAAATAAATAATGTTTGACTACTATTTTATAAGTGTAGTTTTGGTTAAGTGTTGGTTTGC
CATATGCCCTTACTTATATAATGATTTGCTACTGTTTTTCATAT
Found at i:8034461 original size:69 final size:69
Alignment explanation
Indices: 8034381--8034706 Score: 293
Period size: 69 Copynumber: 4.6 Consensus size: 69
8034371 TATGCCAAAA
* *
8034381 TTTTCACATGTTCTTAAATATCTAATATTTTGCTATTGTTTTTAAGTCTTGTTTTGGTTAAGTGT
1 TTTTCATATGTTCTTAAATATCTAATATTTTGCTACTGTTTTTAAGTCTTGTTTTGGTTAAGTGT
8034446 TAGT
66 TAGT
* * * *
8034450 TTTTCATATGTTCTTAAATATCTACT-TTTTGGCTACTGTTTGTAAACTGTTGTTTTGGTTAAGT
1 TTTTCATATGTTCTTAAATATCTAATATTTT-GCTACTGTTT-TTAAGTCTTGTTTTGGTTAAGT
*
8034514 GTT-GG
64 GTTAGT
* ** * * *
8034519 TTTGCTATATGTTCTTACTTATATAATGA-TTTGCTACTGTTTTTAA-T-ATGTTTTAAAGTGTA
1 TTTTC-ATATGTTCTTAAATATCTAAT-ATTTTGCTACTGTTTTTAAGTCTTGTTTT---G-GTT
* * **
8034581 ACATATGTCAAAA
60 A-A-GTGT-TAGT
* * * *
8034594 TTTTCTTATGTTCTCAAATATCTAATGTTTTGCTACTGTTTTTAAGTCTTGTTTTAGTTAAGTGT
1 TTTTCATATGTTCTTAAATATCTAATATTTTGCTACTGTTTTTAAGTCTTGTTTTGGTTAAGTGT
*
8034659 TGGT
66 TAGT
** *
8034663 TTGCCATATGTTCTTAAATATCTAAGATTTTGCTACTGTTTTTA
1 TTTTCATATGTTCTTAAATATCTAATATTTTGCTACTGTTTTTA
8034707 GGTGTAACAT
Statistics
Matches: 201, Mismatches: 40, Indels: 32
0.74 0.15 0.12
Matches are distributed among these distances:
67 6 0.03
68 5 0.02
69 79 0.39
70 53 0.26
71 7 0.03
72 4 0.02
73 3 0.01
74 33 0.16
75 5 0.02
76 6 0.03
ACGTcount: A:0.23, C:0.10, G:0.15, T:0.52
Consensus pattern (69 bp):
TTTTCATATGTTCTTAAATATCTAATATTTTGCTACTGTTTTTAAGTCTTGTTTTGGTTAAGTGT
TAGT
Found at i:8034538 original size:213 final size:211
Alignment explanation
Indices: 8034236--8034704 Score: 670
Period size: 213 Copynumber: 2.2 Consensus size: 211
8034226 ATTTGCTACT
* * * *
8034236 GTTTTTCATATGTTCTTAAATATCTAATGTTTTACTACTATTTTTAAGTGTAGTTTTGGTTATAT
1 GTTTTTCATATGTTCTTAAATATCTAAT-TTTTGCTACTGTTTTAAACTGTAGTTTTGGTTATAT
*
8034301 GTTGGTTTTCCATATGCCCTTACTTATATAATGATTTGCTACCATTTTAAATATGTTTTAAAGTG
65 GTTGGTTTGCCATATGCCCTTACTTATATAATGATTTGCTACCATTTTAAATATGTTTTAAAGTG
* *
8034366 TAACATATGCCAAAATTTTCACATGTTCTTAAATATCTAATATTTTGCTATTGTTTTTAAGTCTT
130 TAACATATGCCAAAATTTTCACATGTTCTCAAATATCTAATATTTTGCTACTGTTTTTAAGTCTT
*
8034431 GTTTTGGTTAAGTGTTA
195 GTTTTAGTTAAGTGTTA
* *
8034448 GTTTTTCATATGTTCTTAAATATCTACTTTTTGGCTACTGTTTGTAAACTGTTGTTTTGGTTA-A
1 GTTTTTCATATGTTCTTAAATATCTAATTTTT-GCTACTGTTT-TAAACTGTAGTTTTGGTTATA
* ** ** *
8034512 GTGTTGGTTTGCTATATGTTCTTACTTATATAATGATTTGCTACTGTTTTTAATATGTTTTAAAG
64 -TGTTGGTTTGCCATATGCCCTTACTTATATAATGATTTGCTACCATTTTAAATATGTTTTAAAG
* ** *
8034577 TGTAACATATGTCAAAATTTTCTTATGTTCTCAAATATCTAATGTTTTGCTACTGTTTTTAAGTC
128 TGTAACATATGCCAAAATTTTCACATGTTCTCAAATATCTAATATTTTGCTACTGTTTTTAAGTC
*
8034642 TTGTTTTAGTTAAGTGTTG
193 TTGTTTTAGTTAAGTGTTA
** *
8034661 GTTTGCCATATGTTCTTAAATATCTAAGATTTTGCTACTGTTTT
1 GTTTTTCATATGTTCTTAAATATCTAA-TTTTTGCTACTGTTTT
8034705 TAGGTGTAAC
Statistics
Matches: 228, Mismatches: 25, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
211 4 0.02
212 37 0.16
213 183 0.80
214 4 0.02
ACGTcount: A:0.25, C:0.11, G:0.14, T:0.51
Consensus pattern (211 bp):
GTTTTTCATATGTTCTTAAATATCTAATTTTTGCTACTGTTTTAAACTGTAGTTTTGGTTATATG
TTGGTTTGCCATATGCCCTTACTTATATAATGATTTGCTACCATTTTAAATATGTTTTAAAGTGT
AACATATGCCAAAATTTTCACATGTTCTCAAATATCTAATATTTTGCTACTGTTTTTAAGTCTTG
TTTTAGTTAAGTGTTA
Found at i:8038110 original size:3 final size:3
Alignment explanation
Indices: 8038102--8038131 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
8038092 TAATCCCCTT
8038102 TTC TTC TTC TTC TTC TTC TTC TTC ATTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC -TTC TT
8038132 TTTTTTCTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:8040358 original size:279 final size:279
Alignment explanation
Indices: 8039858--8040416 Score: 1118
Period size: 279 Copynumber: 2.0 Consensus size: 279
8039848 CAAGTTTCAT
8039858 TCTTTAAAAGATTTGAATCTTCACTAAAATATTATGCATATTTATTGAAAAAAACTATAAAATCA
1 TCTTTAAAAGATTTGAATCTTCACTAAAATATTATGCATATTTATTGAAAAAAACTATAAAATCA
8039923 ATTTGACATGTTATTTAAATTTTAAATACTAAATATAATTAATTTGTTTGAAAAATATAAATTTT
66 ATTTGACATGTTATTTAAATTTTAAATACTAAATATAATTAATTTGTTTGAAAAATATAAATTTT
8039988 AAATTATAAAAATTTATATTTTATATTTCTCATTTTCAAAGTTTCAAATATGTTTGGATATAAAT
131 AAATTATAAAAATTTATATTTTATATTTCTCATTTTCAAAGTTTCAAATATGTTTGGATATAAAT
8040053 TTGCTTTTGAATAATCATTGAGTACTGTCTAATGTCTAATTGTGTTCACCATATGTGTGCAATGT
196 TTGCTTTTGAATAATCATTGAGTACTGTCTAATGTCTAATTGTGTTCACCATATGTGTGCAATGT
8040118 CAAAATTTGTGTGATGAGA
261 CAAAATTTGTGTGATGAGA
8040137 TCTTTAAAAGATTTGAATCTTCACTAAAATATTATGCATATTTATTGAAAAAAACTATAAAATCA
1 TCTTTAAAAGATTTGAATCTTCACTAAAATATTATGCATATTTATTGAAAAAAACTATAAAATCA
8040202 ATTTGACATGTTATTTAAATTTTAAATACTAAATATAATTAATTTGTTTGAAAAATATAAATTTT
66 ATTTGACATGTTATTTAAATTTTAAATACTAAATATAATTAATTTGTTTGAAAAATATAAATTTT
8040267 AAATTATAAAAATTTATATTTTATATTTCTCATTTTCAAAGTTTCAAATATGTTTGGATATAAAT
131 AAATTATAAAAATTTATATTTTATATTTCTCATTTTCAAAGTTTCAAATATGTTTGGATATAAAT
8040332 TTGCTTTTGAATAATCATTGAGTACTGTCTAATGTCTAATTGTGTTCACCATATGTGTGCAATGT
196 TTGCTTTTGAATAATCATTGAGTACTGTCTAATGTCTAATTGTGTTCACCATATGTGTGCAATGT
8040397 CAAAATTTGTGTGATGAGA
261 CAAAATTTGTGTGATGAGA
8040416 T
1 T
8040417 TTAAGATAAA
Statistics
Matches: 280, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
279 280 1.00
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.43
Consensus pattern (279 bp):
TCTTTAAAAGATTTGAATCTTCACTAAAATATTATGCATATTTATTGAAAAAAACTATAAAATCA
ATTTGACATGTTATTTAAATTTTAAATACTAAATATAATTAATTTGTTTGAAAAATATAAATTTT
AAATTATAAAAATTTATATTTTATATTTCTCATTTTCAAAGTTTCAAATATGTTTGGATATAAAT
TTGCTTTTGAATAATCATTGAGTACTGTCTAATGTCTAATTGTGTTCACCATATGTGTGCAATGT
CAAAATTTGTGTGATGAGA
Found at i:8045213 original size:28 final size:27
Alignment explanation
Indices: 8045152--8045213 Score: 65
Period size: 28 Copynumber: 2.3 Consensus size: 27
8045142 AGAAAAACGA
*
8045152 TTAAT-TTTAGTTTTGATATTTTTATT
1 TTAATATTTAGTTTTGATATTTTAATT
*
8045178 ATAGATATTTAAGTTTT-ATATTTTAATTT
1 TTA-ATATTT-AGTTTTGATATTTTAA-TT
8045207 TTAATAT
1 TTAATAT
8045214 AATTTTATCT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
26 2 0.07
27 2 0.07
28 15 0.52
29 10 0.34
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (27 bp):
TTAATATTTAGTTTTGATATTTTAATT
Found at i:8047450 original size:8 final size:8
Alignment explanation
Indices: 8047434--8047500 Score: 50
Period size: 8 Copynumber: 8.5 Consensus size: 8
8047424 ATGTGGGTAG
*
8047434 AATACTAA
1 AATAATAA
8047442 AATAAT-A
1 AATAATAA
8047449 AATAAT-A
1 AATAATAA
*
8047456 AATAA-AGG
1 AATAATA-A
*
8047464 AATAATAT
1 AATAATAA
8047472 AATAATAA
1 AATAATAA
*
8047480 AATTATAA
1 AATAATAA
*
8047488 TAATAGTAA
1 -AATAATAA
8047497 AATA
1 AATA
8047501 CCAAATAATA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
7 13 0.27
8 28 0.58
9 7 0.15
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.28
Consensus pattern (8 bp):
AATAATAA
Found at i:8047639 original size:13 final size:13
Alignment explanation
Indices: 8047621--8047654 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
8047611 AATAAATGAC
8047621 AATACAAATTTTA
1 AATACAAATTTTA
8047634 AATACAAATTTTA
1 AATACAAATTTTA
8047647 AATACAAA
1 AATACAAA
8047655 AAAAAGTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (13 bp):
AATACAAATTTTA
Found at i:8047673 original size:4 final size:4
Alignment explanation
Indices: 8047661--8047704 Score: 61
Period size: 4 Copynumber: 11.0 Consensus size: 4
8047651 CAAAAAAAAG
* * *
8047661 TAAA GAAA TAAA TAAA TGAA TAAA TATA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
8047705 ACAATACATA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:8052135 original size:96 final size:96
Alignment explanation
Indices: 8051971--8052152 Score: 303
Period size: 96 Copynumber: 1.9 Consensus size: 96
8051961 GAAGTCTGTT
* * *
8051971 ATCGATGGAAACGATGGAGCAGACACGGAGCCCAAGAAGCTTGGTTAGAGCAAGGGAAAAGCCGA
1 ATCGAAGGAAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTAGAGCAAGAGAAAAGCCGA
8052036 AGCCAAGAGGG-TAAAGAGGAGAAAGTTTATC
66 AGCCAAGAGGGCT-AAGAGGAGAAAGTTTATC
* *
8052067 ATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGAGAAAAGCCGA
1 ATCGAAGGAAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTAGAGCAAGAGAAAAGCCGA
8052132 AGCCAAGAGGGCTAAGAGGAG
66 AGCCAAGAGGGCTAAGAGGAG
8052153 CAAAAAGAAG
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
96 79 0.99
97 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.35, T:0.10
Consensus pattern (96 bp):
ATCGAAGGAAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTAGAGCAAGAGAAAAGCCGA
AGCCAAGAGGGCTAAGAGGAGAAAGTTTATC
Found at i:8063424 original size:29 final size:27
Alignment explanation
Indices: 8063381--8063446 Score: 69
Period size: 29 Copynumber: 2.4 Consensus size: 27
8063371 TTTAAAACTC
* * *
8063381 AAATTTCAAACTTAATTATAATTTTACA
1 AAATTTTAAACTTAAATATAATTCTA-A
* *
8063409 AATATTTTAAATTTAAATCTAATTCTAA
1 AA-ATTTTAAACTTAAATATAATTCTAA
8063437 AAATTTTAAA
1 AAATTTTAAA
8063447 GAAATACATC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
27 8 0.25
28 5 0.16
29 19 0.59
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (27 bp):
AAATTTTAAACTTAAATATAATTCTAA
Found at i:8063609 original size:16 final size:17
Alignment explanation
Indices: 8063577--8063619 Score: 54
Period size: 15 Copynumber: 2.6 Consensus size: 17
8063567 ATAAGGTTAA
8063577 AATAATTTTATTATTTT
1 AATAATTTTATTATTTT
8063594 AATAA-TTTA-TATTTT
1 AATAATTTTATTATTTT
*
8063609 TATAACTTTTA
1 AATAA-TTTTA
8063620 AAAAATTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 10 0.43
16 4 0.17
17 9 0.39
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (17 bp):
AATAATTTTATTATTTT
Found at i:8064754 original size:31 final size:31
Alignment explanation
Indices: 8064716--8064780 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
8064706 TGCCTACTAA
* *
8064716 TCCCTAACGGTATAAGATATTTTCAATTTAG
1 TCCCTAACAGTATAAGACATTTTCAATTTAG
* *
8064747 TCCCTAACATTATCAGACATTTTCAATTTAG
1 TCCCTAACAGTATAAGACATTTTCAATTTAG
8064778 TCC
1 TCC
8064781 TTTGGACGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (31 bp):
TCCCTAACAGTATAAGACATTTTCAATTTAG
Found at i:8065157 original size:20 final size:20
Alignment explanation
Indices: 8065135--8065178 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
8065125 TAAATTTTAG
8065135 TTTTTTATATTTTTAAAATGT
1 TTTTTTA-ATTTTTAAAATGT
*
8065156 TTTTTTAATTTTTATAAT-T
1 TTTTTTAATTTTTAAAATGT
8065175 TTTT
1 TTTT
8065179 AAATAATTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.23
20 10 0.45
21 7 0.32
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (20 bp):
TTTTTTAATTTTTAAAATGT
Found at i:8065167 original size:8 final size:8
Alignment explanation
Indices: 8065156--8065212 Score: 51
Period size: 9 Copynumber: 6.6 Consensus size: 8
8065146 TTTAAAATGT
8065156 TTTTTTAA
1 TTTTTTAA
8065164 TTTTTATAA
1 TTTTT-TAA
8065173 TTTTTTAAA
1 TTTTTT-AA
* *
8065182 TAATTTCAA
1 T-TTTTTAA
8065191 TATTTTTAA
1 T-TTTTTAA
*
8065200 TTTTTAAA
1 TTTTTTAA
8065208 TTTTT
1 TTTTT
8065213 ATATAATTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
8 17 0.41
9 21 0.51
10 3 0.07
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (8 bp):
TTTTTTAA
Found at i:8067482 original size:14 final size:14
Alignment explanation
Indices: 8067463--8067493 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
8067453 CTATAATGAA
8067463 CATCCACTTAATAG
1 CATCCACTTAATAG
8067477 CATCCACTTAATAG
1 CATCCACTTAATAG
8067491 CAT
1 CAT
8067494 TCATAACACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.29, G:0.06, T:0.29
Consensus pattern (14 bp):
CATCCACTTAATAG
Found at i:8069818 original size:41 final size:41
Alignment explanation
Indices: 8069773--8070055 Score: 374
Period size: 41 Copynumber: 6.9 Consensus size: 41
8069763 CCAAAAGCGT
*
8069773 CGCTAATGCTCATATCTATAGCGGCGCTTATTT-AAAAACGC
1 CGCTAATGCTCAGATCTATAGCGGCGCTT-TTTGAAAAACGC
* *
8069814 CGCTAATGCTCAGATCTATAGCGGCACTTATTT-AAAAAAGC
1 CGCTAATGCTCAGATCTATAGCGGCGCTT-TTTGAAAAACGC
*
8069855 CGCTAATGCTCAGATCTATAGCGACGCTTTTTGAAAAACGC
1 CGCTAATGCTCAGATCTATAGCGGCGCTTTTTGAAAAACGC
* * *
8069896 CGCTAATGCTAAGATCTATAGCGGCGCTTTTTGAAAAAAGT
1 CGCTAATGCTCAGATCTATAGCGGCGCTTTTTGAAAAACGC
* *
8069937 CGCTAATGCTCAGATCTATAGCGGCGCTTTTTGGAAAACAC
1 CGCTAATGCTCAGATCTATAGCGGCGCTTTTTGAAAAACGC
* * * *
8069978 CGCCAATGCTCAGATCTATAACTGCGCTTTTTGAAAAATGC
1 CGCTAATGCTCAGATCTATAGCGGCGCTTTTTGAAAAACGC
* * * *
8070019 CGCTAATGCTC-GATTTATAGCGGTGTTTTTTCAAAAA
1 CGCTAATGCTCAGATCTATAGCGGCGCTTTTTGAAAAA
8070056 GCTCCATAAA
Statistics
Matches: 213, Mismatches: 28, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
40 23 0.11
41 190 0.89
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (41 bp):
CGCTAATGCTCAGATCTATAGCGGCGCTTTTTGAAAAACGC
Found at i:8070346 original size:7 final size:7
Alignment explanation
Indices: 8070334--8070527 Score: 75
Period size: 7 Copynumber: 26.6 Consensus size: 7
8070324 TATAGTTCAA
8070334 GGTTTAT
1 GGTTTAT
*
8070341 GGTTTAG
1 GGTTTAT
*
8070348 GGTATAT
1 GGTTTAT
* *
8070355 AGTTTAA
1 GGTTTAT
8070362 GGTTTAT
1 GGTTTAT
8070369 GGTTTATGAT
1 GG-TT-T-AT
*
8070379 GAGTTAAT
1 G-GTTTAT
** *
8070387 ATTTTAA
1 GGTTTAT
8070394 GGTTTAT
1 GGTTTAT
**
8070401 GAATTAT
1 GGTTTAT
*
8070408 GGGTTTAG
1 -GGTTTAT
*
8070416 GGTTTAG
1 GGTTTAT
*
8070423 GGTTTAA
1 GGTTTAT
*
8070430 GGTTTAGG
1 GGTTTA-T
8070438 GGTTTAT
1 GGTTTAT
8070445 GGTTTAT
1 GGTTTAT
*
8070452 GAGTTAAT
1 G-GTTTAT
* * *
8070460 -ATCTCAA
1 GGT-TTAT
8070467 GGTTTAT
1 GGTTTAT
8070474 GGTTTAT
1 GGTTTAT
*
8070481 GGATTAT
1 GGTTTAT
*
8070488 GGATTAT
1 GGTTTAT
*
8070495 GGATTAT
1 GGTTTAT
* *
8070502 GGACTTAG
1 GG-TTTAT
*
8070510 GGATTAT
1 GGTTTAT
*
8070517 GATTTAT
1 GGTTTAT
8070524 GGTT
1 GGTT
8070528 CAAGGGTTGA
Statistics
Matches: 138, Mismatches: 39, Indels: 20
0.70 0.20 0.10
Matches are distributed among these distances:
6 1 0.01
7 105 0.76
8 25 0.18
9 1 0.01
10 5 0.04
11 1 0.01
ACGTcount: A:0.24, C:0.02, G:0.28, T:0.46
Consensus pattern (7 bp):
GGTTTAT
Found at i:8070523 original size:22 final size:21
Alignment explanation
Indices: 8070470--8070525 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 21
8070460 ATCTCAAGGT
* *
8070470 TTATGGTTTATGGATTATGGA
1 TTATGATTTATGGATTAGGGA
8070491 TTATGGA-TTATGGACTTAGGGA
1 TTAT-GATTTATGGA-TTAGGGA
8070513 TTATGATTTATGG
1 TTATGATTTATGG
8070526 TTCAAGGGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
21 13 0.43
22 17 0.57
ACGTcount: A:0.25, C:0.02, G:0.29, T:0.45
Consensus pattern (21 bp):
TTATGATTTATGGATTAGGGA
Found at i:8070553 original size:43 final size:44
Alignment explanation
Indices: 8070506--8070589 Score: 118
Period size: 43 Copynumber: 1.9 Consensus size: 44
8070496 GATTATGGAC
* *
8070506 TTAGGGATTATGATTTA-TGGTTCAAGGGTTGA-GGTTTAGAGAT
1 TTAGGGATTATGATTTAGGGGTTAAAGGG-TGAGGGTTTAGAGAT
*
8070549 TTAGGGTTTATGATTTAGGGGTTAAAGGGTGAGGGTTTAGA
1 TTAGGGATTATGATTTAGGGGTTAAAGGGTGAGGGTTTAGA
8070590 AGTTAAGGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 19 0.53
44 17 0.47
ACGTcount: A:0.25, C:0.01, G:0.36, T:0.38
Consensus pattern (44 bp):
TTAGGGATTATGATTTAGGGGTTAAAGGGTGAGGGTTTAGAGAT
Found at i:8070565 original size:14 final size:14
Alignment explanation
Indices: 8070389--8070568 Score: 51
Period size: 14 Copynumber: 12.5 Consensus size: 14
8070379 GAGTTAATAT
*
8070389 TTTAAGGTTTATGA
1 TTTAGGGTTTATGA
* * *
8070403 ATTATGGGTTTAGGG
1 TTTA-GGGTTTATGA
* *
8070418 TTTAGGGTTTAAGG
1 TTTAGGGTTTATGA
*
8070432 TTTAGGGGTTTATGG
1 TTTA-GGGTTTATGA
* *
8070447 TTTATGAGTTAAT-A
1 TTTA-GGGTTTATGA
* * *
8070461 TCTCAAGGTTTATGG
1 T-TTAGGGTTTATGA
* *
8070476 TTTATGGATTATGGA
1 TTTAGGGTTTAT-GA
* *
8070491 -TTATGGATTATGGA
1 TTTAGGGTTTAT-GA
* *
8070505 CTTAGGGATTATGA
1 TTTAGGGTTTATGA
* * * *
8070519 TTTATGGTTCAAGG
1 TTTAGGGTTTATGA
* *
8070533 GTT-GAGGTTTAGAGA
1 TTTAG-GGTTTA-TGA
8070548 TTTAGGGTTTATGA
1 TTTAGGGTTTATGA
8070562 TTTAGGG
1 TTTAGGG
8070569 GTTAAAGGGT
Statistics
Matches: 124, Mismatches: 33, Indels: 18
0.71 0.19 0.10
Matches are distributed among these distances:
14 70 0.56
15 53 0.43
16 1 0.01
ACGTcount: A:0.24, C:0.02, G:0.31, T:0.43
Consensus pattern (14 bp):
TTTAGGGTTTATGA
Found at i:8070599 original size:44 final size:43
Alignment explanation
Indices: 8070508--8070604 Score: 108
Period size: 44 Copynumber: 2.2 Consensus size: 43
8070498 TTATGGACTT
* * * *
8070508 AGGGATTATGATTTATGGTTCAAGGGTTGAGGTTTAGAGATTT
1 AGGGTTTATGATTTAGGGTTAAAGGGTTGAGGTTTAGAGATTA
8070551 AGGGTTTATGATTTAGGGGTTAAAGGG-TGAGGGTTTAGA-AGTTA
1 AGGGTTTATGATTTA-GGGTTAAAGGGTTGA-GGTTTAGAGA-TTA
*
8070595 AGGGTCTATG
1 AGGGTTTATG
8070605 GGTTAAGGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
43 18 0.39
44 28 0.61
ACGTcount: A:0.26, C:0.02, G:0.36, T:0.36
Consensus pattern (43 bp):
AGGGTTTATGATTTAGGGTTAAAGGGTTGAGGTTTAGAGATTA
Found at i:8071986 original size:14 final size:14
Alignment explanation
Indices: 8071967--8071995 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
8071957 TGTGTTTATA
8071967 TAAATACATAATTC
1 TAAATACATAATTC
8071981 TAAATACATAATTC
1 TAAATACATAATTC
8071995 T
1 T
8071996 GAAGTTTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (14 bp):
TAAATACATAATTC
Found at i:8076346 original size:31 final size:31
Alignment explanation
Indices: 8076300--8076366 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
8076290 TGGTTGTATT
* *
8076300 TTTTATGCTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATGATAAATTTGCTGTATTTGGCTGCA
* * * *
8076331 TTTTATGATATATTTGTTGTATTTGGTTGGA
1 TTTTATGATAAATTTGCTGTATTTGGCTGCA
8076362 TTTTA
1 TTTTA
8076367 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.06, G:0.19, T:0.57
Consensus pattern (31 bp):
TTTTATGATAAATTTGCTGTATTTGGCTGCA
Found at i:8076503 original size:43 final size:43
Alignment explanation
Indices: 8076442--8076581 Score: 192
Period size: 43 Copynumber: 3.3 Consensus size: 43
8076432 TAGAAAAAGT
* *
8076442 GCCGCTAAAAGCCATGACTTTTAGTGGCACTTTACCCACAAAT
1 GCCGCTAAAAGCCATGACTTTCAGTGGCACTTTACCCACAAAC
* * * *
8076485 GCCGCTAAAAGTCGTGACTTTCAGCGGCGCTTTACCCACAAAC
1 GCCGCTAAAAGCCATGACTTTCAGTGGCACTTTACCCACAAAC
* *
8076528 GCCGCTTAAAGCCATGGCTTTCAGTGGCACTTTTA-CCACAAAC
1 GCCGCTAAAAGCCATGACTTTCAGTGGCAC-TTTACCCACAAAC
8076571 GCCGCTAAAAG
1 GCCGCTAAAAG
8076582 TTGTGGCTTT
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
43 79 0.95
44 4 0.05
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (43 bp):
GCCGCTAAAAGCCATGACTTTCAGTGGCACTTTACCCACAAAC
Found at i:8076567 original size:86 final size:86
Alignment explanation
Indices: 8076442--8076599 Score: 237
Period size: 86 Copynumber: 1.8 Consensus size: 86
8076432 TAGAAAAAGT
* *
8076442 GCCGCTAAAAGCCATGACTTTTAGTGGCACTTTACCCACAAATGCCGCTAAAAGTCGTGACTTTC
1 GCCGCTAAAAGCCATGACTTTCAGTGGCACTTTACCCACAAACGCCGCTAAAAGTCGTGACTTTC
8076507 AGCGGCGCTTTACCCACAAAC
66 AGCGGCGCTTTACCCACAAAC
* * * *
8076528 GCCGCTTAAAGCCATGGCTTTCAGTGGCACTTTTA-CCACAAACGCCGCTAAAAGTTGTGGCTTT
1 GCCGCTAAAAGCCATGACTTTCAGTGGCAC-TTTACCCACAAACGCCGCTAAAAGTCGTGACTTT
*
8076592 TAGCGGCG
65 CAGCGGCG
8076600 TTTTTTCCAA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
86 60 0.94
87 4 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (86 bp):
GCCGCTAAAAGCCATGACTTTCAGTGGCACTTTACCCACAAACGCCGCTAAAAGTCGTGACTTTC
AGCGGCGCTTTACCCACAAAC
Found at i:8103431 original size:29 final size:29
Alignment explanation
Indices: 8103374--8103433 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
8103364 GCTTTTATTT
** ***
8103374 AAAAATTATTTAAAAGTATTTATTGCAAA
1 AAAAATTATTTAAAAGTATAAAAAACAAA
8103403 AAAAATTATTTAAAAGTATAAAAAACAAA
1 AAAAATTATTTAAAAGTATAAAAAACAAA
8103432 AA
1 AA
8103434 TATAATAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (29 bp):
AAAAATTATTTAAAAGTATAAAAAACAAA
Found at i:8103443 original size:3 final size:3
Alignment explanation
Indices: 8103435--8103461 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8103425 AAACAAAAAT
8103435 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
8103462 GGGTCTATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8105834 original size:29 final size:29
Alignment explanation
Indices: 8105796--8105851 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
8105786 AGATTTAGAC
8105796 AAAAAAGATTAAGTATAAATGGAGATACA
1 AAAAAAGATTAAGTATAAATGGAGATACA
8105825 AAAAAAGATTAAGTATAAATGGAGATA
1 AAAAAAGATTAAGTATAAATGGAGATA
8105852 ATTGAGTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.59, C:0.02, G:0.18, T:0.21
Consensus pattern (29 bp):
AAAAAAGATTAAGTATAAATGGAGATACA
Found at i:8109105 original size:42 final size:43
Alignment explanation
Indices: 8109047--8109141 Score: 122
Period size: 42 Copynumber: 2.2 Consensus size: 43
8109037 TCCTAGATAT
* *
8109047 GGTCTTACACTTAATC-ATATATCGATGCCACTATCCCAAACAG
1 GGTCTTACACTGAATCAATATA-CGATGCCAATATCCCAAACAG
* * *
8109090 GGTCTTACAC-GAATCAATATACGATGCCAATGTCCCAGACAT
1 GGTCTTACACTGAATCAATATACGATGCCAATATCCCAAACAG
8109132 GGTCTTACAC
1 GGTCTTACAC
8109142 ACAATCACAA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 31 0.67
43 15 0.33
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (43 bp):
GGTCTTACACTGAATCAATATACGATGCCAATATCCCAAACAG
Found at i:8109162 original size:43 final size:41
Alignment explanation
Indices: 8109024--8109183 Score: 142
Period size: 43 Copynumber: 3.8 Consensus size: 41
8109014 ACATAAGTTC
* * * *
8109024 ATACAATGCC-ATATCCTAGATATGGTCTTACACTTAATCAT
1 ATACAATGCCAATATCCCAGACATGGTCTTACAC-CAATCAA
* * * * *
8109065 ATATCGATGCCACTATCCCAAACAGGGTCTTACACGAATCAA
1 ATA-CAATGCCAATATCCCAGACATGGTCTTACACCAATCAA
* *
8109107 TATACGATGCCAATGTCCCAGACATGGTCTTACACACAATCACA
1 -ATACAATGCCAATATCCCAGACATGGTCTTACAC-CAATCA-A
** *
8109151 ATACAATGCCAACGTCCTAGACATGGTCTTACA
1 ATACAATGCCAATATCCCAGACATGGTCTTACA
8109184 AGTAATCACA
Statistics
Matches: 98, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
41 3 0.03
42 38 0.39
43 56 0.57
44 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.26
Consensus pattern (41 bp):
ATACAATGCCAATATCCCAGACATGGTCTTACACCAATCAA
Found at i:8111488 original size:22 final size:24
Alignment explanation
Indices: 8111458--8111501 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
8111448 CTATCTAGAT
8111458 ATCAAATC-TCT-AAGATTACAAA
1 ATCAAATCTTCTAAAGATTACAAA
*
8111480 ATCATATCTTCTAAAGATTACA
1 ATCAAATCTTCTAAAGATTACA
8111502 TTTAATGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 3 0.16
24 9 0.47
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (24 bp):
ATCAAATCTTCTAAAGATTACAAA
Found at i:8114555 original size:390 final size:390
Alignment explanation
Indices: 8114043--8114823 Score: 1472
Period size: 390 Copynumber: 2.0 Consensus size: 390
8114033 CAACTTGATC
** *
8114043 AAAAAATTCACAATAAGAGGAATAGAGTACCTGTTCTTCACAACGATCTTGTTTAGGGCCTGATA
1 AAAAAATTCACAATAAGAGGAATAGAGTACCTGTTCTTCACAACGATCTTGTTTAGAACCCGATA
*
8114108 ATCGATCCACATTCTCAACAACCCATCATGTTTTTCTGAAACAACACTGGCGCACCATATGGAAA
66 ATCGATCCACATTCTCAACAACCCATCATGTGTTTCTGAAACAACACTGGCGCACCATATGGAAA
*
8114173 TTTAGATGGCCTAATGAATCCCACATCTAAAAACTCCTCCAATTGTTTCCGCAACTCTTCTAACT
131 TTTAGATGGCCTAATAAATCCCACATCTAAAAACTCCTCCAATTGTTTCCGCAACTCTTCTAACT
8114238 TTGGCGGAGACTTACAATATGGGGCCCTTGCTGGCGGCACCATATTGGACACTAACTCGATCTTA
196 TTGGCGGAGACTTACAATATGGGGCCCTTGCTGGCGGCACCATATTGGACACTAACTCGATCTTA
8114303 TGGTCCACCTCCCTCTTCGGTGGCAAAATTTTGGGCAACAAGGCAGGTATCACATCCCGAAAAGG
261 TGGTCCACCTCCCTCTTCGGTGGCAAAATTTTGGGCAACAAGGCAGGTATCACATCCCGAAAAGG
8114368 CTGCAACAATTGGCACACTTCTTTCGGGATCTCACCAACGGACTTAACGATTTCCTCAATCTTCA
326 CTGCAACAATTGGCACACTTCTTTCGGGATCTCACCAACGGACTTAACGATTTCCTCAATCTTCA
8114433 AAAAAATTCACAATAAGAGGAATAGAGTACCTGTTCTTCACAACGATCTTGTTTAGAACCCGATA
1 AAAAAATTCACAATAAGAGGAATAGAGTACCTGTTCTTCACAACGATCTTGTTTAGAACCCGATA
8114498 ATCGATCCACATTCTCAACAACCCATCATGTGTTTCTGAAACAACACTGGCGCACCATATGGAAA
66 ATCGATCCACATTCTCAACAACCCATCATGTGTTTCTGAAACAACACTGGCGCACCATATGGAAA
* *
8114563 TTTAGATGGCCTAATAAATCCCACATCTAAAAACTCCTCCAATTGTTTCCGTAACTCTTCTAATT
131 TTTAGATGGCCTAATAAATCCCACATCTAAAAACTCCTCCAATTGTTTCCGCAACTCTTCTAACT
8114628 TTGGCGGAGACTTACAATATGGGGCCCTTGCTGGCGGCACCATATTGGACACTAACTCGATCTTA
196 TTGGCGGAGACTTACAATATGGGGCCCTTGCTGGCGGCACCATATTGGACACTAACTCGATCTTA
8114693 TGGTCCACCTCCCTCTTCGGTGGCAAAATTTTGGGCAACAAGGCAGGTATCACATCCCGAAAAGG
261 TGGTCCACCTCCCTCTTCGGTGGCAAAATTTTGGGCAACAAGGCAGGTATCACATCCCGAAAAGG
* * *
8114758 CTGCAACAATTGGTACACTTCTTTTGGGATCTCACCAACGGACTTAATGATTTCCTCAATCTTCA
326 CTGCAACAATTGGCACACTTCTTTCGGGATCTCACCAACGGACTTAACGATTTCCTCAATCTTCA
8114823 A
1 A
8114824 GGTGGCTAAA
Statistics
Matches: 381, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
390 381 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (390 bp):
AAAAAATTCACAATAAGAGGAATAGAGTACCTGTTCTTCACAACGATCTTGTTTAGAACCCGATA
ATCGATCCACATTCTCAACAACCCATCATGTGTTTCTGAAACAACACTGGCGCACCATATGGAAA
TTTAGATGGCCTAATAAATCCCACATCTAAAAACTCCTCCAATTGTTTCCGCAACTCTTCTAACT
TTGGCGGAGACTTACAATATGGGGCCCTTGCTGGCGGCACCATATTGGACACTAACTCGATCTTA
TGGTCCACCTCCCTCTTCGGTGGCAAAATTTTGGGCAACAAGGCAGGTATCACATCCCGAAAAGG
CTGCAACAATTGGCACACTTCTTTCGGGATCTCACCAACGGACTTAACGATTTCCTCAATCTTCA
Found at i:8117475 original size:23 final size:23
Alignment explanation
Indices: 8117445--8117490 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
8117435 CTATAATTTT
8117445 CATGTTTCTGCGAGATTAAGTTA
1 CATGTTTCTGCGAGATTAAGTTA
*
8117468 CATGTTTCTGTGAGATTAAGTTA
1 CATGTTTCTGCGAGATTAAGTTA
8117491 AATATTCTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.26, C:0.11, G:0.22, T:0.41
Consensus pattern (23 bp):
CATGTTTCTGCGAGATTAAGTTA
Found at i:8121340 original size:51 final size:53
Alignment explanation
Indices: 8121275--8121383 Score: 141
Period size: 51 Copynumber: 2.1 Consensus size: 53
8121265 AGTCATTGGG
*
8121275 ATGTTAATGCTGATTTTACCGAAGATCTTAAT-AAAGAAGA-TCTCACAAGTT
1 ATGTTAATGCTGATTTTACCGAAGACCTTAATAAAAGAAGACTCTCACAAGTT
* ** * *
8121326 ATGTTAATGTTGATTTTGTCGGAGACCTTAATAAAATAAGATCTCTCACAAGTT
1 ATGTTAATGCTGATTTTACCGAAGACCTTAATAAAAGAAGA-CTCTCACAAGTT
8121380 ATGT
1 ATGT
8121384 CTTTATATTT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
51 27 0.55
52 7 0.14
54 15 0.31
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.36
Consensus pattern (53 bp):
ATGTTAATGCTGATTTTACCGAAGACCTTAATAAAAGAAGACTCTCACAAGTT
Found at i:8130042 original size:308 final size:308
Alignment explanation
Indices: 8129484--8130670 Score: 2302
Period size: 308 Copynumber: 3.9 Consensus size: 308
8129474 TAAGGACTAA
8129484 ACCCATATTGTAATTTTTAGTATTGCTCAAGATTTTATATGTTGACATTATTGAATAGTTTAAGT
1 ACCCATATTGTAATTTTTAGTATTGCTCAAGATTTTATATGTTGACATTATTGAATAGTTTAAGT
*
8129549 ATTAGGGATTAAATAGATAGATTTTTAAGTTAGAAATGGAAAATGACTAAATTGTGGAATTATTT
66 ATTAGGGATTAAATAGATAGATTTTTAAGTTAGAAATGGAAAATGACTAAATTGTGGAATTAATT
*
8129614 ATTTATTTTGAATAATAGGGACTAAATTGTGAAAAAATTTAAAAGTTTGGGGTTGAATTGGAAAA
131 ATTTATTTTGAACAATAGGGACTAAATTGTGAAAAAATTTAAAAGTTTGGGGTTGAATTGGAAAA
*
8129679 GAGGAAGCTAAATGTGGTCTAGAGTGAAATTAGCACAAAAATATGAAGTTAAACGTGATGATTAA
196 GAGGAAGCTAAATGTGGTCAAGAGTGAAATTAGCACAAAAATATGAAGTTAAACGTGATGATTAA
8129744 AATATGTAATTTTTATATCTTAGGAATCTCGGTACCTAGGGCTACCCG
261 AATATGTAATTTTTATATCTTAGGAATCTCGGTACCTAGGGCTACCCG
8129792 ACCCATATTGTAATTTTTAGTATTGCTCAAGATTTTATATGTTGACATTATTGAATAGTTTAAGT
1 ACCCATATTGTAATTTTTAGTATTGCTCAAGATTTTATATGTTGACATTATTGAATAGTTTAAGT
8129857 ATTAGGGATTAAATAGATAGATTTTTAAGTTAGAAATGGAAAATGACTAAATTGTGGAATTAATT
66 ATTAGGGATTAAATAGATAGATTTTTAAGTTAGAAATGGAAAATGACTAAATTGTGGAATTAATT
*
8129922 ATTTATTTTGAACAATAGGGACTAAATTGTGAAAAAATTTAAAAGTTTGGGGTTGAATTGGAAAG
131 ATTTATTTTGAACAATAGGGACTAAATTGTGAAAAAATTTAAAAGTTTGGGGTTGAATTGGAAAA
8129987 GAGGAAGCTAAATGTGGTCAAGAGTGAAATTAGCACAAAAATATGAAGTTAAACGTGATGATTAA
196 GAGGAAGCTAAATGTGGTCAAGAGTGAAATTAGCACAAAAATATGAAGTTAAACGTGATGATTAA
8130052 AATATGTAATTTTTATATCTTAGGAATCTCGGTACCTAGGGCTACCCG
261 AATATGTAATTTTTATATCTTAGGAATCTCGGTACCTAGGGCTACCCG
8130100 ACCCATATTGTAATTTTTAGTATTGCTCAAGATTTTATATGTTGACATTATTGAATAGTTTAAGT
1 ACCCATATTGTAATTTTTAGTATTGCTCAAGATTTTATATGTTGACATTATTGAATAGTTTAAGT
*
8130165 ATTAGGGATTAAATAGATAGATTTTTAAGTTAGAAATGGAAAATGACTAAATTGTGGAATTATTT
66 ATTAGGGATTAAATAGATAGATTTTTAAGTTAGAAATGGAAAATGACTAAATTGTGGAATTAATT
*
8130230 ATTTATTTTGAATAATAGGGACTAAATTGTGAAAAAATTTAAAAGTTTGGGGTTGAATTGGAAAA
131 ATTTATTTTGAACAATAGGGACTAAATTGTGAAAAAATTTAAAAGTTTGGGGTTGAATTGGAAAA
*
8130295 GAGGAAGCTAAATGTGGTCTAGAGTGAAATTAGCACAAAAATATGAAGTTAAACGTGATGATTAA
196 GAGGAAGCTAAATGTGGTCAAGAGTGAAATTAGCACAAAAATATGAAGTTAAACGTGATGATTAA
8130360 AATATGTAATTTTTATATCTTAGGAATCTCGGTACCTAGGGCTACCCG
261 AATATGTAATTTTTATATCTTAGGAATCTCGGTACCTAGGGCTACCCG
8130408 ACCCATATTGTAATTTTTAGTATTGCTCAAGATTTTATATGTTGACATTATTGAATAGTTTAAGT
1 ACCCATATTGTAATTTTTAGTATTGCTCAAGATTTTATATGTTGACATTATTGAATAGTTTAAGT
8130473 ATTAGGGATTAAATAGATAGATTTTTAAGTTAGAAATGGAAAATGACTAAATTGTGGAATTAATT
66 ATTAGGGATTAAATAGATAGATTTTTAAGTTAGAAATGGAAAATGACTAAATTGTGGAATTAATT
*
8130538 ATTTATTTTGAACAATAGGGACTAAATTGTGAAAAAATTTAAAAGTTTGGGGTTGAATTGGAAAG
131 ATTTATTTTGAACAATAGGGACTAAATTGTGAAAAAATTTAAAAGTTTGGGGTTGAATTGGAAAA
8130603 GAGGAAGCTAAATGTGGTCAAGAGTGAAATTAGCACAAAAATATGAAGTTAAACGTGATGATTAA
196 GAGGAAGCTAAATGTGGTCAAGAGTGAAATTAGCACAAAAATATGAAGTTAAACGTGATGATTAA
8130668 AAT
261 AAT
8130671 TAGTCTAGGT
Statistics
Matches: 867, Mismatches: 12, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
308 867 1.00
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.35
Consensus pattern (308 bp):
ACCCATATTGTAATTTTTAGTATTGCTCAAGATTTTATATGTTGACATTATTGAATAGTTTAAGT
ATTAGGGATTAAATAGATAGATTTTTAAGTTAGAAATGGAAAATGACTAAATTGTGGAATTAATT
ATTTATTTTGAACAATAGGGACTAAATTGTGAAAAAATTTAAAAGTTTGGGGTTGAATTGGAAAA
GAGGAAGCTAAATGTGGTCAAGAGTGAAATTAGCACAAAAATATGAAGTTAAACGTGATGATTAA
AATATGTAATTTTTATATCTTAGGAATCTCGGTACCTAGGGCTACCCG
Found at i:8130743 original size:19 final size:18
Alignment explanation
Indices: 8130721--8130756 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8130711 CAAAATATAG
8130721 TGTGAAATTTGAAATGTAA
1 TGTGAAA-TTGAAATGTAA
*
8130740 TGTGGAATTGAAATGTA
1 TGTGAAATTGAAATGTA
8130757 TAATATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.39, C:0.00, G:0.25, T:0.36
Consensus pattern (18 bp):
TGTGAAATTGAAATGTAA
Found at i:8149721 original size:7 final size:7
Alignment explanation
Indices: 8149709--8149738 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
8149699 AAAATGCATG
8149709 TATATAT
1 TATATAT
8149716 TATATAT
1 TATATAT
8149723 TATATAT
1 TATATAT
8149730 TATATAT
1 TATATAT
8149737 TA
1 TA
8149739 ACATTAATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TATATAT
Found at i:8149775 original size:36 final size:39
Alignment explanation
Indices: 8149706--8149781 Score: 104
Period size: 36 Copynumber: 2.0 Consensus size: 39
8149696 GTAAAAATGC
* *
8149706 ATGTATATATTATATATTATATATTATATATTAACATTA
1 ATGTATATATTATATATTATATATAATATATTAAAATTA
*
8149745 ATGTATATA-TATTTATTATA-ATAATA-ATTAAAATTA
1 ATGTATATATTATATATTATATATAATATATTAAAATTA
8149781 A
1 A
8149782 AGTTATAAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 10 0.29
37 5 0.15
38 10 0.29
39 9 0.26
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (39 bp):
ATGTATATATTATATATTATATATAATATATTAAAATTA
Found at i:8149843 original size:9 final size:9
Alignment explanation
Indices: 8149829--8149860 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
8149819 ATGCAAAATT
8149829 AAGAAAGAA
1 AAGAAAGAA
8149838 AAGAAAGAA
1 AAGAAAGAA
8149847 AA-AAAGAA
1 AAGAAAGAA
8149855 AAGAAA
1 AAGAAA
8149861 AGAGAAAACC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (9 bp):
AAGAAAGAA
Found at i:8154285 original size:188 final size:191
Alignment explanation
Indices: 8153943--8154317 Score: 585
Period size: 188 Copynumber: 2.0 Consensus size: 191
8153933 CTGATAGTGC
* * * *
8153943 GTCCTACTTGGAGCGTTATCTCTCTACAAATTTCAACCCTCATTTGGGACAAAAAAACCATCGTA
1 GTCCTACTTAGAGCGTTATCTCTCTACAAATTTCAACACTCACTTGGGACAAAAAAACCATCGAA
*
8154008 TATATCCCGAGATATATTTTCAAAACTCATCTCGTCAATATTAATGCACTGTGATAAATAATTTA
66 TATATCCCGAGATATATTTTCAAAACTCATCTCATCAATATTAATGCACTGTGATAAATAATTTA
* * ** *
8154073 CTAAAATATCGAATCAATCTAGTATTAAAAATGTGCAAAATTTTAAAAACTACTATTGTGT
131 CTAAAATATCGAATCAAACTAGTATTAAAAATGTGAAAAAAATTAAAAACTAATATTGTGT
* *
8154134 GTCCTGCTTAGAGCGTTATCTCTCTACAAATTTCAACACTCACTTGGGACAAAAAACCCA-C-AA
1 GTCCTACTTAGAGCGTTATCTCTCTACAAATTTCAACACTCACTTGGGACAAAAAAACCATCGAA
* *
8154197 TATATCCCGAGATATA-TTTCAAAACTTATCTCATCAATATTAATGCATTGTGATAAATAATTTA
66 TATATCCCGAGATATATTTTCAAAACTCATCTCATCAATATTAATGCACTGTGATAAATAATTTA
* *
8154261 CTAAAATATTGGATCAAACTAGTATTAAAAATGTGAAAAAAATTAAAAACTAATATT
131 CTAAAATATCGAATCAAACTAGTATTAAAAATGTGAAAAAAATTAAAAACTAATATT
8154318 TCATCCCAAA
Statistics
Matches: 168, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
188 95 0.57
189 17 0.10
190 1 0.01
191 55 0.33
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (191 bp):
GTCCTACTTAGAGCGTTATCTCTCTACAAATTTCAACACTCACTTGGGACAAAAAAACCATCGAA
TATATCCCGAGATATATTTTCAAAACTCATCTCATCAATATTAATGCACTGTGATAAATAATTTA
CTAAAATATCGAATCAAACTAGTATTAAAAATGTGAAAAAAATTAAAAACTAATATTGTGT
Found at i:8154568 original size:17 final size:17
Alignment explanation
Indices: 8154546--8154580 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
8154536 GGTATAATGT
8154546 ACATAATTATAAAATAA
1 ACATAATTATAAAATAA
*
8154563 ACATAATTATAATATAA
1 ACATAATTATAAAATAA
8154580 A
1 A
8154581 TAATACATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
ACATAATTATAAAATAA
Found at i:8154740 original size:15 final size:15
Alignment explanation
Indices: 8154709--8154777 Score: 51
Period size: 13 Copynumber: 4.9 Consensus size: 15
8154699 TTTAAGAAAA
8154709 AATTATAATA-AACAT
1 AATTATAATATAA-AT
8154724 AATTATAATATAAAT
1 AATTATAATATAAAT
* *
8154739 AA-TA-CATCTAAAT
1 AATTATAATATAAAT
*
8154752 AATTA-AA-ATGAA-
1 AATTATAATATAAAT
*
8154764 AATTATAAAATAAA
1 AATTATAATATAAA
8154778 ATTAATGGTT
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
12 5 0.11
13 14 0.32
14 9 0.20
15 14 0.32
16 2 0.05
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.32
Consensus pattern (15 bp):
AATTATAATATAAAT
Found at i:8157446 original size:6 final size:6
Alignment explanation
Indices: 8157430--8157463 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
8157420 CAGATTGTTA
*
8157430 GTTTTT TTTTTT GTTTTT GTTTTT GTTTTT GTTT
1 GTTTTT GTTTTT GTTTTT GTTTTT GTTTTT GTTT
8157464 GCTGCTTATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (6 bp):
GTTTTT
Found at i:8164273 original size:17 final size:17
Alignment explanation
Indices: 8164251--8164283 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
8164241 AATAATTACT
8164251 ATATAGTACCTATATAC
1 ATATAGTACCTATATAC
8164268 ATATAGTACCTATATA
1 ATATAGTACCTATATA
8164284 TGGCTATCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.15, G:0.06, T:0.36
Consensus pattern (17 bp):
ATATAGTACCTATATAC
Found at i:8165148 original size:15 final size:15
Alignment explanation
Indices: 8165128--8165157 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8165118 GAAGTGTCCA
*
8165128 AAATATGTTTAATTT
1 AAATATATTTAATTT
8165143 AAATATATTTAATTT
1 AAATATATTTAATTT
8165158 GGGTTGGAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (15 bp):
AAATATATTTAATTT
Found at i:8166548 original size:15 final size:16
Alignment explanation
Indices: 8166525--8166571 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
8166515 TTATAAATTT
* *
8166525 ATATATAAAA-AAGTA
1 ATATTTAAAATAAATA
8166540 ATATTTAAAATAAATA
1 ATATTTAAAATAAATA
8166556 ATATTTTATAAATAAA
1 ATA-TTTA-AAATAAA
8166572 AAGGAGTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
15 9 0.33
16 7 0.26
17 4 0.15
18 7 0.26
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (16 bp):
ATATTTAAAATAAATA
Found at i:8166570 original size:18 final size:18
Alignment explanation
Indices: 8166528--8166571 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
8166518 TAAATTTATA
8166528 TATAAA-AAAGTAATATT
1 TATAAATAAAGTAATATT
8166545 TA-AAATAAA-TAATATTT
1 TATAAATAAAGTAATA-TT
8166562 TATAAATAAA
1 TATAAATAAA
8166572 AAGGAGTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 8 0.33
17 9 0.38
18 7 0.29
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (18 bp):
TATAAATAAAGTAATATT
Found at i:8169516 original size:21 final size:22
Alignment explanation
Indices: 8169477--8169523 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
8169467 TTAACTTTAA
8169477 AAAATTTGTAATGTATATTTTT
1 AAAATTTGTAATGTATATTTTT
8169499 AAAATTT-TAAT-TATTATTTTT
1 AAAATTTGTAATGTA-TATTTTT
8169520 AAAA
1 AAAA
8169524 ATATTTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 2 0.08
21 15 0.62
22 7 0.29
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (22 bp):
AAAATTTGTAATGTATATTTTT
Found at i:8169594 original size:37 final size:37
Alignment explanation
Indices: 8169553--8169722 Score: 155
Period size: 37 Copynumber: 4.4 Consensus size: 37
8169543 TATATTTGTG
8169553 AAATTAATTTTTTATATATTTTAAAAATGTATTTTTC
1 AAATTAATTTTTTATATATTTTAAAAATGTATTTTTC
* * *
8169590 AAATTAATTTTTT-TAAAATTTTAAATAT-TAATTTTTA
1 AAATTAATTTTTTAT-ATATTTTAAAAATGT-ATTTTTC
* * * * *
8169627 AATATTAATTTTTAAAAATATTTTTTAATTTAGATATATATTTGTG
1 AA-ATTAATTTTT---TATATATTTTAA---A-A-ATGTATTTTTC
8169673 AAATTAATTTTTTATATATTTTAAAAATGTATTTTTC
1 AAATTAATTTTTTATATATTTTAAAAATGTATTTTTC
8169710 AAATTAATTTTTT
1 AAATTAATTTTTT
8169723 TAAAATTTTA
Statistics
Matches: 106, Mismatches: 14, Indels: 26
0.73 0.10 0.18
Matches are distributed among these distances:
36 2 0.02
37 53 0.50
38 11 0.10
39 1 0.01
41 7 0.07
42 11 0.10
44 1 0.01
45 10 0.09
46 9 0.08
47 1 0.01
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.56
Consensus pattern (37 bp):
AAATTAATTTTTTATATATTTTAAAAATGTATTTTTC
Found at i:8169648 original size:16 final size:14
Alignment explanation
Indices: 8169608--8169642 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
8169598 TTTTTTAAAA
8169608 TTTTAAATATTAAT
1 TTTTAAATATTAAT
8169622 TTTTAAATATTAAT
1 TTTTAAATATTAAT
8169636 TTTTAAA
1 TTTTAAA
8169643 AATATTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTTAAATATTAAT
Found at i:8169651 original size:13 final size:14
Alignment explanation
Indices: 8169608--8169654 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
8169598 TTTTTTAAAA
*
8169608 TTTTAAATATTAAT
1 TTTTAAATAATAAT
*
8169622 TTTTAAATATTAAT
1 TTTTAAATAATAAT
*
8169636 TTTTAAA-AATATT
1 TTTTAAATAATAAT
8169649 TTTTAA
1 TTTTAA
8169655 TTTAGATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
13 10 0.32
14 21 0.68
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTTAAATAATAAT
Found at i:8169663 original size:120 final size:120
Alignment explanation
Indices: 8169503--8169755 Score: 490
Period size: 120 Copynumber: 2.1 Consensus size: 120
8169493 ATTTTTAAAA
*
8169503 TTTTAATTATT-ATTTTTAAAAATATTTTTTAATTTAGATATATATTTGTGAAATTAATTTTTTA
1 TTTTAAATATTAATTTTTAAAAATATTTTTTAATTTAGATATATATTTGTGAAATTAATTTTTTA
8169567 TATATTTTAAAAATGTATTTTTCAAATTAATTTTTTTAAAATTTTAAATATTAAT
66 TATATTTTAAAAATGTATTTTTCAAATTAATTTTTTTAAAATTTTAAATATTAAT
8169622 TTTTAAATATTAATTTTTAAAAATATTTTTTAATTTAGATATATATTTGTGAAATTAATTTTTTA
1 TTTTAAATATTAATTTTTAAAAATATTTTTTAATTTAGATATATATTTGTGAAATTAATTTTTTA
8169687 TATATTTTAAAAATGTATTTTTCAAATTAATTTTTTTAAAATTTTAAATATTAAT
66 TATATTTTAAAAATGTATTTTTCAAATTAATTTTTTTAAAATTTTAAATATTAAT
8169742 TTTTAAATATTAAT
1 TTTTAAATATTAAT
8169756 CATATTTTTA
Statistics
Matches: 132, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
119 10 0.08
120 122 0.92
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.57
Consensus pattern (120 bp):
TTTTAAATATTAATTTTTAAAAATATTTTTTAATTTAGATATATATTTGTGAAATTAATTTTTTA
TATATTTTAAAAATGTATTTTTCAAATTAATTTTTTTAAAATTTTAAATATTAAT
Found at i:8169744 original size:37 final size:36
Alignment explanation
Indices: 8169622--8169749 Score: 110
Period size: 37 Copynumber: 3.6 Consensus size: 36
8169612 AAATATTAAT
8169622 TTTTAAATATTAATTTTTAAA--AATATTTTTT--AA
1 TTTTAAATATTAATTTTTAAATTAAT-TTTTTTAAAA
* * *
8169655 -TTTAGATA-TATATTTGTGAAATTAA-TTTTTTATATA
1 TTTTAAATATTA-ATTT-TTAAATTAATTTTTTTA-AAA
*
8169691 TTTTAAAAATGT-ATTTTTCAAATTAATTTTTTTAAAA
1 TTTTAAATAT-TAATTTTT-AAATTAATTTTTTTAAAA
8169728 TTTTAAATATTAATTTTTAAAT
1 TTTTAAATATTAATTTTTAAAT
8169750 ATTAATCATA
Statistics
Matches: 74, Mismatches: 8, Indels: 23
0.70 0.08 0.22
Matches are distributed among these distances:
31 2 0.03
32 11 0.15
33 10 0.14
35 2 0.03
36 7 0.09
37 34 0.46
38 7 0.09
39 1 0.01
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (36 bp):
TTTTAAATATTAATTTTTAAATTAATTTTTTTAAAA
Found at i:8169747 original size:14 final size:14
Alignment explanation
Indices: 8169728--8169755 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8169718 TTTTTTAAAA
8169728 TTTTAAATATTAAT
1 TTTTAAATATTAAT
8169742 TTTTAAATATTAAT
1 TTTTAAATATTAAT
8169756 CATATTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTTAAATATTAAT
Found at i:8169831 original size:10 final size:9
Alignment explanation
Indices: 8169806--8169849 Score: 54
Period size: 9 Copynumber: 4.8 Consensus size: 9
8169796 TTGTAAATAC
*
8169806 AATTTCTTT
1 AATTTTTTT
8169815 AATTTTTTT
1 AATTTTTTT
8169824 ACA-TTTTTT
1 A-ATTTTTTT
8169833 AACTTTTTTT
1 AA-TTTTTTT
8169843 AATTTTT
1 AATTTTT
8169850 AAAAAATATG
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
8 1 0.03
9 21 0.68
10 9 0.29
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (9 bp):
AATTTTTTT
Done.