Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 30 of 167
Found at i:8855677 original size:26 final size:26
Alignment explanation
Indices: 8855638--8855745 Score: 182
Period size: 26 Copynumber: 4.2 Consensus size: 26
8855628 TGGTACAAAT
*
8855638 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
8855664 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
8855690 TGATAATAGG-TTAGGTAAATGTTCCA
1 TGATAAT-GGATTAGGTAAATGTTCCA
8855716 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
8855742 TGAT
1 TGAT
8855746 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
25 2 0.03
26 73 0.95
27 2 0.03
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.35
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:8857399 original size:27 final size:26
Alignment explanation
Indices: 8857359--8857499 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 26
8857349 AGGAAGCGTC
*
8857359 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
8857386 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
8857413 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
8857440 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
8857467 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
8857494 CTGGTG
1 CTGGTG
8857500 ACTTCGTCAC
Statistics
Matches: 100, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
26 10 0.10
27 88 0.88
28 2 0.02
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:8857441 original size:54 final size:53
Alignment explanation
Indices: 8857359--8857499 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 53
8857349 AGGAAGCGTC
*
8857359 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
8857413 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
* *
8857467 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
8857500 ACTTCGTCAC
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 7 0.09
54 75 0.91
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
Found at i:8857510 original size:27 final size:26
Alignment explanation
Indices: 8857359--8857516 Score: 147
Period size: 27 Copynumber: 5.9 Consensus size: 26
8857349 AGGAAGCGTC
* * *
8857359 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
*
8857386 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
* * * *
8857413 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGACTCTGCCAC-AATATCTGTT
* *
8857440 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
*
8857467 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGT-T
*
8857494 CTGGTGACT-TCGTCACAATATCT
1 CTGGTGACTCT-GCCACAATATCT
8857517 AGCAGCCTCG
Statistics
Matches: 114, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
26 10 0.09
27 102 0.89
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGTT
Found at i:8862699 original size:26 final size:26
Alignment explanation
Indices: 8862660--8862767 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
8862650 TGGTACAAAT
*
8862660 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
8862686 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
8862712 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* * *
8862738 TAATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
8862764 TGAT
1 TGAT
8862768 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:8864706 original size:27 final size:27
Alignment explanation
Indices: 8864666--8864806 Score: 171
Period size: 27 Copynumber: 5.2 Consensus size: 27
8864656 AGGAAGCGTC
8864666 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* *
8864693 CTGGTGGCTTTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
*
8864720 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* *
8864747 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
* *
8864774 ATGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-AT
8864801 CTGGTG
1 CTGGTG
8864807 ACTTCGTCAC
Statistics
Matches: 100, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
26 10 0.10
27 87 0.87
28 3 0.03
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:8864748 original size:54 final size:53
Alignment explanation
Indices: 8864666--8864824 Score: 221
Period size: 54 Copynumber: 3.0 Consensus size: 53
8864656 AGGAAGCGTC
8864666 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
*
8864720 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
* * * * * *
8864774 ATGGTGGCTCTGCCACAATATCTGTATCTGGTGACTTCGTCACA-ATATCTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTGGCTTTGCCACATATATCTG
8864825 GCAGCCTCGC
Statistics
Matches: 95, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 14 0.15
54 81 0.85
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
Found at i:8864817 original size:27 final size:27
Alignment explanation
Indices: 8864666--8864824 Score: 145
Period size: 27 Copynumber: 5.9 Consensus size: 27
8864656 AGGAAGCGTC
8864666 CTGGTGGCTAT-GCCACAATTATCTG-AT
1 CTGGTGGCT-TCGCCACAA-TATCTGTAT
*
8864693 CTGGTGGCTTTGCCACATATATCTGT-T
1 CTGGTGGCTTCGCCACA-ATATCTGTAT
*
8864720 CTGGTGGCTAT-GCCACGATTATCTG-AT
1 CTGGTGGCT-TCGCCAC-AATATCTGTAT
8864747 CTGGTGGC-TCTGCCACATATATCTGT-T
1 CTGGTGGCTTC-GCCACA-ATATCTGTAT
*
8864774 ATGGTGGC-TCTGCCACAATATCTGTAT
1 CTGGTGGCTTC-GCCACAATATCTGTAT
* *
8864801 CTGGTGACTTCGTCACAATATCTG
1 CTGGTGGCTTCGCCACAATATCTG
8864825 GCAGCCTCGC
Statistics
Matches: 114, Mismatches: 6, Indels: 24
0.79 0.04 0.17
Matches are distributed among these distances:
25 1 0.01
26 10 0.09
27 98 0.86
28 5 0.04
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTTCGCCACAATATCTGTAT
Found at i:8866813 original size:15 final size:15
Alignment explanation
Indices: 8866793--8866823 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8866783 AAATATGAAA
8866793 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
8866808 GATATGTTTTGTATT
1 GATATGTTTTGGATT
8866823 G
1 G
8866824 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:8872664 original size:37 final size:37
Alignment explanation
Indices: 8872607--8872711 Score: 169
Period size: 37 Copynumber: 2.9 Consensus size: 37
8872597 TGTGATCACT
*
8872607 TATCAC-TTGTC-CCTGATCAGATAAGTGTAGCCACC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
* *
8872642 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACT
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
8872679 TATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGC
8872712 TAAAGCTATC
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
35 6 0.09
36 4 0.06
37 54 0.84
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (37 bp):
TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
Found at i:8872754 original size:52 final size:52
Alignment explanation
Indices: 8872675--8872891 Score: 284
Period size: 52 Copynumber: 4.2 Consensus size: 52
8872665 TAAGTGTAGC
* * *
8872675 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
*
8872728 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * *
8872780 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * *
8872826 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
8872878 CACTTTGTCACTTG
1 CACTTT-TCACTTG
8872892 ATCAGAAGTA
Statistics
Matches: 144, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
46 43 0.30
49 1 0.01
52 85 0.59
53 15 0.10
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
Found at i:8872797 original size:46 final size:46
Alignment explanation
Indices: 8872725--8872897 Score: 231
Period size: 46 Copynumber: 3.7 Consensus size: 46
8872715 AGCTATCACT
*
8872725 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGC
1 TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
*
8872770 TATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGC
1 TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
* **
8872816 TATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGC
1 TATCACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGC
*
8872868 TACCACTTATCACTTTGTCACTTGATCAGA
1 TATCACTTATCACTTTGTCACTTGATCAGA
8872898 AGTACTCAAA
Statistics
Matches: 113, Mismatches: 8, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
45 12 0.11
46 59 0.52
48 1 0.01
50 1 0.01
52 40 0.35
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (46 bp):
TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
Found at i:8872841 original size:98 final size:98
Alignment explanation
Indices: 8872674--8872897 Score: 367
Period size: 98 Copynumber: 2.3 Consensus size: 98
8872664 ATAAGTGTAG
* * * *
8872674 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACT
*
8872739 TGTCACTTGATCAGATAAGTGTAGCCGAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
* * *
8872772 TCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACT
*
8872837 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
8872870 CCACTTATCACTTTGTCACTTGATCAGA
1 CCACTTATCACTTTGTCACTTGATCAGA
8872898 AGTACTCAAA
Statistics
Matches: 116, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 116 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (98 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACT
TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
Found at i:8877560 original size:49 final size:50
Alignment explanation
Indices: 8877505--8877708 Score: 241
Period size: 49 Copynumber: 4.0 Consensus size: 50
8877495 TTCGTTTTCT
*
8877505 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACA-AATCACATAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* * *
8877554 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACA-TATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* *
8877603 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACACATATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACAC-G--T---A-ATCACACA-ATCACATAC
* * *
8877661 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACAT
8877709 GTTCACATGT
Statistics
Matches: 136, Mismatches: 10, Indels: 17
0.83 0.06 0.10
Matches are distributed among these distances:
49 74 0.54
50 7 0.05
51 7 0.05
52 1 0.01
55 1 0.01
56 6 0.04
57 1 0.01
58 39 0.29
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (50 bp):
CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
Found at i:8877675 original size:58 final size:59
Alignment explanation
Indices: 8877589--8877707 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
8877579 TACACGAAAT
8877589 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT-ATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
8877647 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
8877706 CA
1 CA
8877708 TGTTCACATG
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 54 0.90
59 6 0.10
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (59 bp):
CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
Found at i:8877688 original size:28 final size:28
Alignment explanation
Indices: 8877598--8877688 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
8877588 TCACATATCA
8877598 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
* * **
8877626 CTTACACGGAAT-CACATATCACA-CATAT-CA
1 CTTAC-C-G-ATGC-CATAGCCCAGC-TATGGT
8877656 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
8877684 CTTAC
1 CTTAC
8877689 ACGGAATCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 12 0.26
28 13 0.28
29 2 0.04
30 8 0.17
31 12 0.26
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.25
Consensus pattern (28 bp):
CTTACCGATGCCATAGCCCAGCTATGGT
Found at i:8879021 original size:37 final size:37
Alignment explanation
Indices: 8878964--8879068 Score: 169
Period size: 37 Copynumber: 2.9 Consensus size: 37
8878954 TATGATCACT
*
8878964 TATCAC-TTGTC-CCTGATCAGATAAGTGTAGCCACC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
* *
8878999 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACT
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
8879036 TATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGC
8879069 TAAAGCTATC
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
35 6 0.09
36 4 0.06
37 54 0.84
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (37 bp):
TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
Found at i:8879111 original size:52 final size:52
Alignment explanation
Indices: 8879032--8879248 Score: 284
Period size: 52 Copynumber: 4.2 Consensus size: 52
8879022 TAAGTGTAGC
* * *
8879032 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
*
8879085 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * *
8879137 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * *
8879183 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
8879235 CACTTTGTCACTTG
1 CACTTT-TCACTTG
8879249 ATCAGAAGTA
Statistics
Matches: 144, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
46 43 0.30
49 1 0.01
52 85 0.59
53 15 0.10
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
Found at i:8879154 original size:46 final size:46
Alignment explanation
Indices: 8879082--8879254 Score: 231
Period size: 46 Copynumber: 3.7 Consensus size: 46
8879072 AGCTATCACT
*
8879082 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGC
1 TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
*
8879127 TATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGC
1 TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
* **
8879173 TATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGC
1 TATCACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGC
*
8879225 TACCACTTATCACTTTGTCACTTGATCAGA
1 TATCACTTATCACTTTGTCACTTGATCAGA
8879255 AGTACTCAAA
Statistics
Matches: 113, Mismatches: 8, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
45 12 0.11
46 59 0.52
48 1 0.01
50 1 0.01
52 40 0.35
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (46 bp):
TATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGC
Found at i:8879198 original size:98 final size:98
Alignment explanation
Indices: 8879031--8879254 Score: 367
Period size: 98 Copynumber: 2.3 Consensus size: 98
8879021 ATAAGTGTAG
* * * *
8879031 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACT
*
8879096 TGTCACTTGATCAGATAAGTGTAGCCGAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
* * *
8879129 TCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACT
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACT
*
8879194 TGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
66 TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
8879227 CCACTTATCACTTTGTCACTTGATCAGA
1 CCACTTATCACTTTGTCACTTGATCAGA
8879255 AGTACTCAAA
Statistics
Matches: 116, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 116 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (98 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACT
TGTCACTTGATCAGATAAGTGTAGCCAAAGCTA
Found at i:8888595 original size:5 final size:5
Alignment explanation
Indices: 8888585--8888668 Score: 60
Period size: 5 Copynumber: 15.4 Consensus size: 5
8888575 GAGTTAGCAA
* * *
8888585 TTTAT TTTAT TTTAT TTTAT TTTATT TTTCT TTTAT TTAATT GCTTTAC
1 TTTAT TTTAT TTTAT TTTAT TTTA-T TTTAT TTTAT TTTA-T --TTTAT
* *
8888634 TTTAGT TTTGT CTTTAT TTTAT TTTGT TTTCAT TT
1 TTTA-T TTTAT -TTTAT TTTAT TTTAT TTT-AT TT
8888669 CTACCTTTAT
Statistics
Matches: 62, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
5 44 0.71
6 15 0.24
8 3 0.05
ACGTcount: A:0.15, C:0.06, G:0.05, T:0.74
Consensus pattern (5 bp):
TTTAT
Found at i:8888811 original size:27 final size:27
Alignment explanation
Indices: 8888780--8888833 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
8888770 TACACTCCAA
*
8888780 TCCAAGCTAGGGAAGTT-TTCTTTCCCT
1 TCCAAGCCAGGGAAGTTGTT-TTTCCCT
8888807 TCCAAGCCAGGGAAGTTGTTTTTCCCT
1 TCCAAGCCAGGGAAGTTGTTTTTCCCT
8888834 ACCTCATGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 23 0.92
28 2 0.08
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.35
Consensus pattern (27 bp):
TCCAAGCCAGGGAAGTTGTTTTTCCCT
Found at i:8897276 original size:20 final size:20
Alignment explanation
Indices: 8897253--8897300 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
8897243 TACTTGTCCA
* *
8897253 CAATACTGCCAGTTTGTCTG
1 CAATACTGCCACTTTATCTG
*
8897273 CAATACTGTCACTTTATCTG
1 CAATACTGCCACTTTATCTG
*
8897293 CATTACTG
1 CAATACTG
8897301 GTGGCTTGTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.38
Consensus pattern (20 bp):
CAATACTGCCACTTTATCTG
Found at i:8897330 original size:60 final size:60
Alignment explanation
Indices: 8897216--8897339 Score: 142
Period size: 60 Copynumber: 2.1 Consensus size: 60
8897206 AACGAGGAAG
* * * * *
8897216 TACTGACAGTTTATCTGCATTTCTGGTTACTTGTCCACAATACTGCCAGTTTGTCTGCAA
1 TACTGACACTTTATCTGCATTACTGGTGACTTGTCCACAATACTGCCAGCTTGTCTACAA
* * * * *
8897276 TACTGTCACTTTATCTGCATTACTGGTGGCTTGTCCA-TATAATTGGCAGCTTGTCTACAA
1 TACTGACACTTTATCTGCATTACTGGTGACTTGTCCACAAT-ACTGCCAGCTTGTCTACAA
8897336 TACT
1 TACT
8897340 CGTAACTTGA
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
59 2 0.04
60 51 0.96
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.39
Consensus pattern (60 bp):
TACTGACACTTTATCTGCATTACTGGTGACTTGTCCACAATACTGCCAGCTTGTCTACAA
Found at i:8903410 original size:44 final size:45
Alignment explanation
Indices: 8903355--8903457 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 45
8903345 TATCTTTGAC
* * * *
8903355 ATGGACTTACATGAATTATTCTTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
** *
8903399 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATA-TTATAAT
8903445 ATGGACTTACATG
1 ATGGACTTACATG
8903458 GCTCATTTCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 32 0.64
46 18 0.36
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (45 bp):
ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
Found at i:8903456 original size:46 final size:44
Alignment explanation
Indices: 8903377--8903462 Score: 136
Period size: 46 Copynumber: 1.9 Consensus size: 44
8903367 GAATTATTCT
*
8903377 TGTCTCCAATGCCATATATAATATGGACTTACATGGCTCAATCC
1 TGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATCC
*
8903421 TGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGCTCA
1 TGTCTCCAAAGCCATA--TATAATATGGACTTACATGGCTCA
8903463 TTTCTGTTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 15 0.39
46 23 0.61
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (44 bp):
TGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATCC
Found at i:8910801 original size:44 final size:45
Alignment explanation
Indices: 8910753--8910841 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 45
8910743 CATGAATTAT
*
8910753 TCCTGTCTCCAATGCCATA-TATAATATGGACTTACATGGCTCAA
1 TCCTGTCTCCAAAGCCATATTATAATATGGACTTACATGGCTCAA
*
8910797 TCCTGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGCTCA
1 TCCTGTCTCCAAAGCCATA-TTATAATATGGACTTACATGGCTCA
8910842 TTTCTGTTCT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 18 0.44
46 23 0.56
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (45 bp):
TCCTGTCTCCAAAGCCATATTATAATATGGACTTACATGGCTCAA
Found at i:8919000 original size:25 final size:25
Alignment explanation
Indices: 8918971--8919023 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
8918961 TCTAAGTACT
8918971 AAATTGCAAAGAGTACAAAACTAAG
1 AAATTGCAAAGAGTACAAAACTAAG
*
8918996 AAATTGCAAATAGTACAAAACTAAG
1 AAATTGCAAAGAGTACAAAACTAAG
8919021 AAA
1 AAA
8919024 ATAACCAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.17
Consensus pattern (25 bp):
AAATTGCAAAGAGTACAAAACTAAG
Found at i:8923895 original size:52 final size:51
Alignment explanation
Indices: 8923833--8924017 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 51
8923823 TGCCAAATAA
* *
8923833 ATAGTCGAAGCTATTTCGATCTCGTACACTAAGTGCCAATATATATATATAT
1 ATAGCCGAAGCTATTTCGATCTCGCACACTAAGTGCCAAT-TATATATATAT
* * * *
8923885 ATAGCCGAAGCTATCTC-ATTTATGCACACTAAGTGCC----A-ACATATAT
1 ATAGCCGAAGCTATTTCGATCT-CGCACACTAAGTGCCAATTATATATATAT
*
8923931 ATAGCCGAAGCTATTTCGGTCTCGCACACTAAGTGCCAATGTATATA-A-AT
1 ATAGCCGAAGCTATTTCGATCTCGCACACTAAGTGCCAAT-TATATATATAT
* * * * *
8923981 ATAGTCGAAACTATTTTCAATCTCACACACAAAGTGC
1 ATAGCCGAAGCTA-TTTCGATCTCGCACACTAAGTGC
8924018 ACATATTTAA
Statistics
Matches: 107, Mismatches: 17, Indels: 19
0.75 0.12 0.13
Matches are distributed among these distances:
46 37 0.35
47 3 0.03
50 13 0.12
51 24 0.22
52 30 0.28
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.30
Consensus pattern (51 bp):
ATAGCCGAAGCTATTTCGATCTCGCACACTAAGTGCCAATTATATATATAT
Found at i:8924541 original size:21 final size:20
Alignment explanation
Indices: 8924517--8924555 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
8924507 AAACTTGTAT
8924517 ATCTATCAACAAACATTCATA
1 ATCTATCAACAAAC-TTCATA
*
8924538 ATCTATCAAGAAACTTCA
1 ATCTATCAACAAACTTCA
8924556 AAACTCATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.23, G:0.03, T:0.28
Consensus pattern (20 bp):
ATCTATCAACAAACTTCATA
Found at i:8925557 original size:46 final size:46
Alignment explanation
Indices: 8925502--8925592 Score: 164
Period size: 46 Copynumber: 2.0 Consensus size: 46
8925492 GTCTATTCTT
*
8925502 CCTCTTTTTCATGTATTCGCTCTCATTTGTCATGTTGGTCCTATTA
1 CCTCTTTTTCATGTATTCGCTCTCATTTGTCATGTTGCTCCTATTA
*
8925548 CCTCTTTTTCATGTATTCGCTCTCATTTTTCATGTTGCTCCTATT
1 CCTCTTTTTCATGTATTCGCTCTCATTTGTCATGTTGCTCCTATT
8925593 GGAGTGCCTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.12, C:0.25, G:0.11, T:0.52
Consensus pattern (46 bp):
CCTCTTTTTCATGTATTCGCTCTCATTTGTCATGTTGCTCCTATTA
Found at i:8926617 original size:565 final size:565
Alignment explanation
Indices: 8925548--8927315 Score: 3313
Period size: 565 Copynumber: 3.1 Consensus size: 565
8925538 GGTCCTATTA
8925548 CCTCTTTTTCATGTATTCGCTCTCATTTTTCATGTTGCTCCTATTGGAGTGCCTTGAATTTCTTA
1 CCTCTTTTTCATGTATTCGCTCTCATTTTTCATGTTGCTCCTATTGGAGTGCCTTGAATTTCTTA
8925613 TAGATTGAACGAAACTTTCACATAGTCATTTTATCATGCTAAAAATATTAAAATAATAATAAAAT
66 TAGATTGAACGAAACTTTCACATAGTCATTTTATCATGCTAAAAATATTAAAATAATAATAAAAT
*
8925678 AATTATTTCGACTTCGGATTTGTGGTTCCAAAACCACT-GTTCTGGTTTGACTAAAAACGGGCTG
131 AATTATTTCGACTTCGGATTTGTGGTTCCAAAACCACTATTTC-GGTTTGACTAAAAACGGGCTG
* * *
8925742 TTACAATCTTTCTTCAGATTCTTCTAAAATGATACCTCCTCTAATCGGTTGCACAAATACAAACA
195 TTACAATCTTTCTTCAGATCCTTCTAAAACGATCCCTCCTCTAATCGGTTGCACAAATACAAACA
8925807 TTGTGCTTGTTGTGTTCTAACCTCTACTGGATTTGTCGTTCCTCATTTTTTCGTTCCTTTCCTTT
260 TTGTGCTTGTTGTGTTCTAACCTCTACTGGATTTGTCGTTCCTCATTTTTTCGTTCCTTTCCTTT
8925872 TTTCTATCCTCATGGTTTTCCATTCCACACTTTTCTTGAACTTAGGATCTTTTTTGTTTCATTGG
325 TTTCTATCCTCATGGTTTTCCATTCCACACTTTTCTTGAACTTAGGATCTTTTTTGTTTCATTGG
8925937 CCAAGCTAGTTTTTCTCCCTCATGGTTGCACGCACATCTTTCCACATAAAAATTCATAACTTCGA
390 CCAAGCTAGTTTTTCTCCCTCATGGTTGCACGCACATCTTTCCACATAAAAATTCATAACTTCGA
*
8926002 TTATTTAGGAGTCGTAACATTTTGGCTCCATTAGCTCGTCAAGTCGTTTTTGAATGCTTTTCAAC
455 TTATTTAAGAGTCGTAACATTTTGGCTCCATTAGCTCGTCAAGTCGTTTTTGAATGCTTTTCAAC
8926067 ATGTTTTCTATTTTTGATTTTGTTAGGTATGATTGCGTCTACTCTT
520 ATGTTTTCTATTTTTGATTTTGTTAGGTATGATTGCGTCTACTCTT
8926113 CCTCTTTTTCATGTATTCGCTCTCATTTTTCATGTTGCTCCTATTGGAGTGCCTTGAATTTCTTA
1 CCTCTTTTTCATGTATTCGCTCTCATTTTTCATGTTGCTCCTATTGGAGTGCCTTGAATTTCTTA
8926178 TAGATTGAACGAAACTTTCACATAGTCATTTTATCATGCTAAAAATATTAAAATAATAATAAAAT
66 TAGATTGAACGAAACTTTCACATAGTCATTTTATCATGCTAAAAATATTAAAATAATAATAAAAT
*
8926243 AATTATTTCGACTTCGGATTTGTGGTTCCAAAACCACTATTTCGGTTTGACTAAAAACGGGCTCT
131 AATTATTTCGACTTCGGATTTGTGGTTCCAAAACCACTATTTCGGTTTGACTAAAAACGGGCTGT
8926308 TACAATCTTTCTTCAGATCCTTCTAAAACGATCCCTCCTCTAATCGGTTGCACAAATACAAACAT
196 TACAATCTTTCTTCAGATCCTTCTAAAACGATCCCTCCTCTAATCGGTTGCACAAATACAAACAT
8926373 TGTGCTTGTTGTGTTCTAACCTCTACTGGATTTGTCGTTCCTCATTTTTTCGTTCCTTTCCTTTT
261 TGTGCTTGTTGTGTTCTAACCTCTACTGGATTTGTCGTTCCTCATTTTTTCGTTCCTTTCCTTTT
8926438 TTCTATCCTCATGGTTTTCCATTCCACACTTTTCTTGAACTTAGGATCTTTTTTGTTTCATTGGC
326 TTCTATCCTCATGGTTTTCCATTCCACACTTTTCTTGAACTTAGGATCTTTTTTGTTTCATTGGC
8926503 CAAGCTAGTTTTTCTCCCTCATGGTTGCACGCACATCTTTCCACATAAAAATTCATAACTTCGAT
391 CAAGCTAGTTTTTCTCCCTCATGGTTGCACGCACATCTTTCCACATAAAAATTCATAACTTCGAT
8926568 TATTTAAGAGTCGTAACATTTTGGCTCCATTAGCTCGTCAAGTCGTTTTTGAATGCTTTTCAACA
456 TATTTAAGAGTCGTAACATTTTGGCTCCATTAGCTCGTCAAGTCGTTTTTGAATGCTTTTCAACA
*
8926633 TGTTTTCTATTTTTGATTTTGTTAGGTATGATTGCGTCTATTCTT
521 TGTTTTCTATTTTTGATTTTGTTAGGTATGATTGCGTCTACTCTT
* * *
8926678 CCTCTTTTTCATGTATTCGCTCTCATTTGTCATGTTGGTCCTATTAGAGTGCCTTGAATTTCTTA
1 CCTCTTTTTCATGTATTCGCTCTCATTTTTCATGTTGCTCCTATTGGAGTGCCTTGAATTTCTTA
8926743 TAGATTGAACGAAACTTTCACATAGTCATTTTATCATGCTAAAAATATTAAAATAATAATAAAAT
66 TAGATTGAACGAAACTTTCACATAGTCATTTTATCATGCTAAAAATATTAAAATAATAATAAAAT
* * *
8926808 AATTATTTCAACTTCGGATTTGTGGTTCCAAAACCACTATTCCGGTTTGACTAAAAACAGGCTGT
131 AATTATTTCGACTTCGGATTTGTGGTTCCAAAACCACTATTTCGGTTTGACTAAAAACGGGCTGT
*
8926873 TACAATCTTTCTTCAGATCCTTCTAAAACGATCCGTCCTCTAATCGGTTGCACAAATACAAACAT
196 TACAATCTTTCTTCAGATCCTTCTAAAACGATCCCTCCTCTAATCGGTTGCACAAATACAAACAT
* * * * *
8926938 TATGCTTGTTGTGTTCTGACCTCTACTGGATTTTTCGTTCCTCATTTTTTCATTCCTTTCCTTTC
261 TGTGCTTGTTGTGTTCTAACCTCTACTGGATTTGTCGTTCCTCATTTTTTCGTTCCTTTCCTTTT
* *
8927003 TCCAATCCTCATGGTTTTCCATTCCACACTTTTCTTGAACTTAGGATCTTTTTTGTTTCATTGGC
326 TTCTATCCTCATGGTTTTCCATTCCACACTTTTCTTGAACTTAGGATCTTTTTTGTTTCATTGGC
8927068 CAAGCTAGTTTTTCTCCCTCATGGTTGCACGCACATCTTTCCACATAAAAATTCATAACTTCGAT
391 CAAGCTAGTTTTTCTCCCTCATGGTTGCACGCACATCTTTCCACATAAAAATTCATAACTTCGAT
8927133 TATTTAAGAGTCGTAACATTTTGGCTCCATTAGCTCGTCAAGTCGTTTTTGAATGCTTTTCAACA
456 TATTTAAGAGTCGTAACATTTTGGCTCCATTAGCTCGTCAAGTCGTTTTTGAATGCTTTTCAACA
8927198 TGTTTTCTATTTTTGATTTTGTTAGGTATGATTGCGTCTACTCTT
521 TGTTTTCTATTTTTGATTTTGTTAGGTATGATTGCGTCTACTCTT
* *
8927243 CCTCTTTTTCATGTATTCGCTTTCATTTTTCATGTTGCTCCTATTGGAGTGCATTGAATTTCTTA
1 CCTCTTTTTCATGTATTCGCTCTCATTTTTCATGTTGCTCCTATTGGAGTGCCTTGAATTTCTTA
8927308 TAGATTGA
66 TAGATTGA
8927316 GTCACCTATC
Statistics
Matches: 1174, Mismatches: 28, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
565 1171 1.00
566 3 0.00
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.42
Consensus pattern (565 bp):
CCTCTTTTTCATGTATTCGCTCTCATTTTTCATGTTGCTCCTATTGGAGTGCCTTGAATTTCTTA
TAGATTGAACGAAACTTTCACATAGTCATTTTATCATGCTAAAAATATTAAAATAATAATAAAAT
AATTATTTCGACTTCGGATTTGTGGTTCCAAAACCACTATTTCGGTTTGACTAAAAACGGGCTGT
TACAATCTTTCTTCAGATCCTTCTAAAACGATCCCTCCTCTAATCGGTTGCACAAATACAAACAT
TGTGCTTGTTGTGTTCTAACCTCTACTGGATTTGTCGTTCCTCATTTTTTCGTTCCTTTCCTTTT
TTCTATCCTCATGGTTTTCCATTCCACACTTTTCTTGAACTTAGGATCTTTTTTGTTTCATTGGC
CAAGCTAGTTTTTCTCCCTCATGGTTGCACGCACATCTTTCCACATAAAAATTCATAACTTCGAT
TATTTAAGAGTCGTAACATTTTGGCTCCATTAGCTCGTCAAGTCGTTTTTGAATGCTTTTCAACA
TGTTTTCTATTTTTGATTTTGTTAGGTATGATTGCGTCTACTCTT
Found at i:8928382 original size:17 final size:18
Alignment explanation
Indices: 8928349--8928382 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8928339 CATGTGGACT
8928349 ACCCGTGTGGACCCACAC
1 ACCCGTGTGGACCCACAC
8928367 ACCCGTGTGG-CCCACA
1 ACCCGTGTGGACCCACA
8928383 TGGCCCAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.21, C:0.44, G:0.24, T:0.12
Consensus pattern (18 bp):
ACCCGTGTGGACCCACAC
Found at i:8936857 original size:8 final size:9
Alignment explanation
Indices: 8936841--8936883 Score: 63
Period size: 8 Copynumber: 5.0 Consensus size: 9
8936831 TCAAATTATA
8936841 TTAATTCAT
1 TTAATTCAT
8936850 TT-ATTCAT
1 TTAATTCAT
8936858 TTAATTCAT
1 TTAATTCAT
*
8936867 TT-ATTAAT
1 TTAATTCAT
8936875 TTAATTCAT
1 TTAATTCAT
8936884 GTGAAAACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 15 0.50
9 15 0.50
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (9 bp):
TTAATTCAT
Found at i:8936861 original size:17 final size:16
Alignment explanation
Indices: 8936806--8936883 Score: 88
Period size: 17 Copynumber: 4.7 Consensus size: 16
8936796 AAGCTTGTAC
8936806 ATTTAATTCATTTATT
1 ATTTAATTCATTTATT
*
8936822 ATTTAACTGTCA--AATT
1 ATTTAA-T-TCATTTATT
8936838 ATATTAATTCATTTATT
1 AT-TTAATTCATTTATT
8936855 CATTTAATTCATTTATT
1 -ATTTAATTCATTTATT
8936872 AATTTAATTCAT
1 -ATTTAATTCAT
8936884 GTGAAAACTA
Statistics
Matches: 53, Mismatches: 3, Indels: 11
0.79 0.04 0.16
Matches are distributed among these distances:
15 3 0.06
16 12 0.23
17 33 0.62
18 5 0.09
ACGTcount: A:0.35, C:0.09, G:0.01, T:0.55
Consensus pattern (16 bp):
ATTTAATTCATTTATT
Found at i:8941296 original size:17 final size:17
Alignment explanation
Indices: 8941259--8941296 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
8941249 ACATAATATT
8941259 TTTTTATTTTTTTCGTA
1 TTTTTATTTTTTTCGTA
8941276 -TTTTATTTTTTT-GTA
1 TTTTTATTTTTTTCGTA
8941291 CTTTTT
1 -TTTTT
8941297 TCGATCACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 3 0.16
16 12 0.63
17 4 0.21
ACGTcount: A:0.11, C:0.05, G:0.05, T:0.79
Consensus pattern (17 bp):
TTTTTATTTTTTTCGTA
Found at i:8944635 original size:48 final size:47
Alignment explanation
Indices: 8944581--8944726 Score: 220
Period size: 48 Copynumber: 3.0 Consensus size: 47
8944571 TTACACGATG
* * *
8944581 TCTCATATCGACGCCAATGTCATATCCCAAATATGGTCTTACATGGGA
1 TCTCATATCGATGCCAATG-CATGTCCCAAACATGGTCTTACATGGGA
*
8944629 TCTCATATCGATGCCAATGCTATGTCCCAAACATGGTCTTTCATGGGA
1 TCTCATATCGATGCCAATGC-ATGTCCCAAACATGGTCTTACATGGGA
*
8944677 TCTCATATCGATGCCAATGACATGTCCCAGACATGGTCTTACATGGGA
1 TCTCATATCGATGCCAATG-CATGTCCCAAACATGGTCTTACATGGGA
8944725 TC
1 TC
8944727 ATATAACCCT
Statistics
Matches: 90, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
47 1 0.01
48 88 0.98
49 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (47 bp):
TCTCATATCGATGCCAATGCATGTCCCAAACATGGTCTTACATGGGA
Found at i:8960318 original size:12 final size:12
Alignment explanation
Indices: 8960301--8960337 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
8960291 AAACCTAGAG
8960301 AAAACTAAGGCT
1 AAAACTAAGGCT
8960313 AAAACTAAGGCT
1 AAAACTAAGGCT
8960325 AAAACTAA-GCT
1 AAAACTAAGGCT
8960336 AA
1 AA
8960338 TGTGTGTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 5 0.20
12 20 0.80
ACGTcount: A:0.54, C:0.16, G:0.14, T:0.16
Consensus pattern (12 bp):
AAAACTAAGGCT
Found at i:8963846 original size:160 final size:160
Alignment explanation
Indices: 8963582--8963902 Score: 633
Period size: 160 Copynumber: 2.0 Consensus size: 160
8963572 GAGGCCCCGG
8963582 GATAGATGAGAGGGATAAGGGAATGTCGAGTTAGGCTCCATTCATTGGGACATGTTAGTGTGTTG
1 GATAGATGAGAGGGATAAGGGAATGTCGAGTTAGGCTCCATTCATTGGGACATGTTAGTGTGTTG
8963647 GAGAGTGTTAGTTTTATGCTATGCTTATGGGATATGTTAGACTCTTTGAGTCATTAATGTGATGG
66 GAGAGTGTTAGTTTTATGCTATGCTTATGGGATATGTTAGACTCTTTGAGTCATTAATGTGATGG
8963712 AGATCTGTGTACCCAATGTGTGGTGATAGA
131 AGATCTGTGTACCCAATGTGTGGTGATAGA
8963742 GATAGATGAGAGGGATAAGGGAATGTCGAGTTAGGCTCCATTCATTGGGACATGTTAGTGTGTTG
1 GATAGATGAGAGGGATAAGGGAATGTCGAGTTAGGCTCCATTCATTGGGACATGTTAGTGTGTTG
8963807 GAGAGTGTTAGTTTTATGCTATGCTTATGGGATATGTTAGACTCTTTGAGTCATTAATGTGATGG
66 GAGAGTGTTAGTTTTATGCTATGCTTATGGGATATGTTAGACTCTTTGAGTCATTAATGTGATGG
*
8963872 AGATCTGTGTATCCAATGTGTGGTGATAGA
131 AGATCTGTGTACCCAATGTGTGGTGATAGA
8963902 G
1 G
8963903 CCCACTTTTA
Statistics
Matches: 160, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
160 160 1.00
ACGTcount: A:0.25, C:0.09, G:0.31, T:0.35
Consensus pattern (160 bp):
GATAGATGAGAGGGATAAGGGAATGTCGAGTTAGGCTCCATTCATTGGGACATGTTAGTGTGTTG
GAGAGTGTTAGTTTTATGCTATGCTTATGGGATATGTTAGACTCTTTGAGTCATTAATGTGATGG
AGATCTGTGTACCCAATGTGTGGTGATAGA
Found at i:8965203 original size:64 final size:65
Alignment explanation
Indices: 8965114--8965244 Score: 219
Period size: 64 Copynumber: 2.0 Consensus size: 65
8965104 CAATTCAAAA
* *
8965114 TAGATTAGAATAAAATGTTGCTATAATCAAACATAGTCAAGTCAATATCCATTTCAAGGATATAT
1 TAGATCAGAATAAAATGTTGCTATAATCAAACATAATCAAGTCAATATCCATTTCAAGGATATAT
* *
8965179 TAGATCAGAAT-AGATGTTGCTATAATCAGACATAATCAAGTCAATATCCATTTCAAGGATATAT
1 TAGATCAGAATAAAATGTTGCTATAATCAAACATAATCAAGTCAATATCCATTTCAAGGATATAT
8965243 TA
1 TA
8965245 CTAATCATTT
Statistics
Matches: 62, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
64 52 0.84
65 10 0.16
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (65 bp):
TAGATCAGAATAAAATGTTGCTATAATCAAACATAATCAAGTCAATATCCATTTCAAGGATATAT
Found at i:8967337 original size:13 final size:13
Alignment explanation
Indices: 8967319--8967343 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8967309 TATATATATG
8967319 AAAATAAAATAAA
1 AAAATAAAATAAA
8967332 AAAATAAAATAA
1 AAAATAAAATAA
8967344 TAAAGAACAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAATAAAATAAA
Found at i:8967624 original size:16 final size:18
Alignment explanation
Indices: 8967603--8967640 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
8967593 TTCTATATGG
8967603 ATTTTACT-TT-TATTTT
1 ATTTTACTATTGTATTTT
8967619 ATTTTACTATTGTATTTT
1 ATTTTACTATTGTATTTT
8967637 ATTT
1 ATTT
8967641 AAATAAGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.71
Consensus pattern (18 bp):
ATTTTACTATTGTATTTT
Found at i:8971785 original size:5 final size:5
Alignment explanation
Indices: 8971775--8971801 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
8971765 CTAATTTGTG
8971775 AAAAT AAAAT AAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA
8971802 TAAAGAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:8978116 original size:42 final size:42
Alignment explanation
Indices: 8978057--8978137 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
8978047 CAATTTAAGA
8978057 TTTTAAAAATTTGTTTTAATGATTTATTTAATTTTTTATTTT
1 TTTTAAAAATTTGTTTTAATGATTTATTTAATTTTTTATTTT
* **
8978099 TTTTAAATATTAT-TTTTAATTCTTTATTTAATTTTTTAT
1 TTTTAAAAATT-TGTTTTAATGATTTATTTAATTTTTTAT
8978138 ATCTTTAGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
42 34 0.97
43 1 0.03
ACGTcount: A:0.28, C:0.01, G:0.02, T:0.68
Consensus pattern (42 bp):
TTTTAAAAATTTGTTTTAATGATTTATTTAATTTTTTATTTT
Found at i:8981055 original size:22 final size:23
Alignment explanation
Indices: 8981022--8981071 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
8981012 AATACTTACT
8981022 AATATCTGTAGGAATATTCTGTA
1 AATATCTGTAGGAATATTCTGTA
*
8981045 AATATCT-TAGGAATATTTTGTA
1 AATATCTGTAGGAATATTCTGTA
*
8981067 GATAT
1 AATAT
8981072 TTTTTTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 18 0.72
23 7 0.28
ACGTcount: A:0.36, C:0.06, G:0.16, T:0.42
Consensus pattern (23 bp):
AATATCTGTAGGAATATTCTGTA
Found at i:8985652 original size:22 final size:22
Alignment explanation
Indices: 8985624--8985668 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
8985614 AGGGGAAGTG
8985624 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
8985646 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
8985668 T
1 T
8985669 TTATTAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:8988344 original size:25 final size:25
Alignment explanation
Indices: 8988310--8988357 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
8988300 TTTTAATTCG
8988310 AAAACATGCTATTAGAAGCAGACTC
1 AAAACATGCTATTAGAAGCAGACTC
*
8988335 AAAACGTGCTATTAGAAGCAGAC
1 AAAACATGCTATTAGAAGCAGAC
8988358 AATATAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.19
Consensus pattern (25 bp):
AAAACATGCTATTAGAAGCAGACTC
Found at i:8991929 original size:30 final size:29
Alignment explanation
Indices: 8991879--8991943 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 29
8991869 CGTAAATTTG
*
8991879 AATTTAAATTTTTTACTTTTATATTTAAA
1 AATTTAAATTTTTTACTTTTAAATTTAAA
* *
8991908 AATTTAATTTTTTTATTTTTTAAATTTAAA
1 AATTTAAATTTTTTA-CTTTTAAATTTAAA
8991938 AATTTA
1 AATTTA
8991944 GGTTCAATGA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 14 0.44
30 18 0.56
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (29 bp):
AATTTAAATTTTTTACTTTTAAATTTAAA
Found at i:8992138 original size:30 final size:31
Alignment explanation
Indices: 8992102--8992160 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 31
8992092 ATAATTATAC
*
8992102 TTAAATTTT-AAAATTTAAAAA-ATAAAAAAA
1 TTAAATTTTCAAAA-ATAAAAATATAAAAAAA
8992132 TTAAATTTTCAAAAATAAAAATATAAAAA
1 TTAAATTTTCAAAAATAAAAATATAAAAA
8992161 TGAAATTCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 15 0.58
31 11 0.42
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (31 bp):
TTAAATTTTCAAAAATAAAAATATAAAAAAA
Found at i:8992158 original size:22 final size:23
Alignment explanation
Indices: 8992109--8992161 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
8992099 TACTTAAATT
8992109 TTAAAATTTAAAAAATAAAAAAA
1 TTAAAATTTAAAAAATAAAAAAA
* * *
8992132 TTAAATTTTCAAAAATAAAAATA
1 TTAAAATTTAAAAAATAAAAAAA
*
8992155 TAAAAAT
1 TTAAAAT
8992162 GAAATTCCAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (23 bp):
TTAAAATTTAAAAAATAAAAAAA
Found at i:8992889 original size:27 final size:29
Alignment explanation
Indices: 8992859--8992916 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
8992849 TATTCTTAAA
8992859 TTTTAATT-TTTT-TAAAAATTATGATTT
1 TTTTAATTCTTTTGTAAAAATTATGATTT
* * *
8992886 TTTTTATTCTTTTGTAAATATTTTGATTT
1 TTTTAATTCTTTTGTAAAAATTATGATTT
8992915 TT
1 TT
8992917 AAAAAATTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 7 0.27
28 4 0.15
29 15 0.58
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.67
Consensus pattern (29 bp):
TTTTAATTCTTTTGTAAAAATTATGATTT
Found at i:8998979 original size:22 final size:20
Alignment explanation
Indices: 8998950--8999002 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 20
8998940 TTTTATTTCA
8998950 ATTAATTTAGACATTTTTTTAT
1 ATTAATTTA-ACATTTTTTT-T
* *
8998972 TTTAATTTTAATATTTTTTTT
1 ATTAA-TTTAACATTTTTTTT
8998993 ATTAATTTAA
1 ATTAATTTAA
8999003 TTTTTACATT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 5 0.19
21 5 0.19
22 13 0.48
23 4 0.15
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (20 bp):
ATTAATTTAACATTTTTTTT
Found at i:8998990 original size:21 final size:19
Alignment explanation
Indices: 8998962--8999007 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 19
8998952 TAATTTAGAC
8998962 ATTTTTTTATT-TTAATTTTA
1 ATTTTTTT-TTATTAA-TTTA
8998982 ATATTTTTTTTATTAATTTA
1 AT-TTTTTTTTATTAATTTA
8999002 ATTTTT
1 ATTTTT
8999008 ACATTCTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 4 0.17
20 10 0.42
21 10 0.42
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (19 bp):
ATTTTTTTTTATTAATTTA
Found at i:9010665 original size:38 final size:36
Alignment explanation
Indices: 9010623--9010696 Score: 103
Period size: 38 Copynumber: 2.0 Consensus size: 36
9010613 AAATCATGCC
* * *
9010623 AAAAAAATTGTCAGCTTTGTATAAAGAAAACATCAAAT
1 AAAAAAAATATCAGCATTGTATAAA-AAAA-ATCAAAT
9010661 AAAAAAAATATCAGCATTGTATAAAAAAAATCAAAT
1 AAAAAAAATATCAGCATTGTATAAAAAAAATCAAAT
9010697 TACTAAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
36 7 0.21
37 4 0.12
38 22 0.67
ACGTcount: A:0.58, C:0.09, G:0.08, T:0.24
Consensus pattern (36 bp):
AAAAAAAATATCAGCATTGTATAAAAAAAATCAAAT
Found at i:9020489 original size:3 final size:3
Alignment explanation
Indices: 9020481--9020515 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
9020471 TGATAGTTTG
9020481 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
9020516 TTCTTTAACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:9024826 original size:17 final size:17
Alignment explanation
Indices: 9024793--9024826 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9024783 CCATGCTTCA
* *
9024793 AATTTGAAGCTTCTATT
1 AATTTGAACCTTATATT
9024810 AATTTGAACCTTATATT
1 AATTTGAACCTTATATT
9024827 CACGTTTTGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.12, G:0.09, T:0.47
Consensus pattern (17 bp):
AATTTGAACCTTATATT
Found at i:9025836 original size:13 final size:13
Alignment explanation
Indices: 9025820--9025844 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9025810 AAAAGACTTG
9025820 AAAAAACTAAAAA
1 AAAAAACTAAAAA
9025833 AAAAAACTAAAA
1 AAAAAACTAAAA
9025845 CCTACTAGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (13 bp):
AAAAAACTAAAAA
Found at i:9032118 original size:55 final size:55
Alignment explanation
Indices: 9032059--9032167 Score: 128
Period size: 55 Copynumber: 2.0 Consensus size: 55
9032049 CTAGCCTGCC
* **
9032059 AAAACAACACGAGCGTACAACACGCCCGTGTGGAGGAACCATGGTCGAACCTGTT
1 AAAACAACACGAGCGTACAACACGCCCGTGTCGAACAACCATGGTCGAACCTGTT
* * *** * *
9032114 AAAACAGCACGGGCGTGTGACACGCCCGTGTCGAACACCCGTGGTCGAACCTGT
1 AAAACAACACGAGCGTACAACACGCCCGTGTCGAACAACCATGGTCGAACCTGT
9032168 CAAACGTCTA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
55 44 1.00
ACGTcount: A:0.28, C:0.29, G:0.28, T:0.15
Consensus pattern (55 bp):
AAAACAACACGAGCGTACAACACGCCCGTGTCGAACAACCATGGTCGAACCTGTT
Found at i:9048475 original size:28 final size:27
Alignment explanation
Indices: 9048422--9048475 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
9048412 TCTTTTTTTA
* *
9048422 TTTTTTAAAATTAAAAAAGTCTAATTG
1 TTTTATAAAATTAAAAAAGTATAATTG
9048449 TTTTATAAAATTATAAAATA-TATAATT
1 TTTTATAAAATTA-AAAA-AGTATAATT
9048476 ATAAATTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 12 0.52
28 10 0.43
29 1 0.04
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (27 bp):
TTTTATAAAATTAAAAAAGTATAATTG
Found at i:9053487 original size:7 final size:7
Alignment explanation
Indices: 9053475--9053499 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
9053465 CTTTCATATT
9053475 TTCTTTA
1 TTCTTTA
9053482 TTCTTTA
1 TTCTTTA
9053489 TTCTTTA
1 TTCTTTA
9053496 TTCT
1 TTCT
9053500 ACTCATCTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.16, G:0.00, T:0.72
Consensus pattern (7 bp):
TTCTTTA
Found at i:9056761 original size:50 final size:48
Alignment explanation
Indices: 9056638--9056867 Score: 180
Period size: 50 Copynumber: 4.8 Consensus size: 48
9056628 GGTAGGAAGC
* *
9056638 CGATGTCATGTCCCAGATATGGTCTTACACTAGCTCACGTATCAAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACGTATCAAAGT
* * ** * *
9056686 CAATGCAATGTCCCAGACATGGTCTTACACTAGCTCTTGTATGTCGAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACGTA--TCAAAGT
* * * *** *
9056736 CGATGCCATGTCCCAAACATGGTCTTACACT-GAATCTCGTCCATCTGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCACGT--ATCAAAGT
* * * * *
9056786 CGATGTCATGTCCCAGACATGGTCTTACACT-GACACAC--CTCATAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCACGTATCAAAGT
* *
9056832 CGATGTCATGTCCCATACATGGTCTTACACTAGCTC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
9056868 TCGAATAACC
Statistics
Matches: 148, Mismatches: 28, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
46 36 0.24
47 1 0.01
48 35 0.24
49 1 0.01
50 74 0.50
52 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACGTATCAAAGT
Found at i:9059813 original size:35 final size:35
Alignment explanation
Indices: 9059745--9059855 Score: 96
Period size: 35 Copynumber: 3.1 Consensus size: 35
9059735 AAACCACCCA
* * * * *
9059745 AACACACCAGATACTTATAATAGCCAATTCAACCGT
1 AACACACCA-ATGCTCATAAGAGCTAATCCAACCGT
* ** * *
9059781 ATCATGCCAATGCTTATAAGAGTTAATCCAACCGT
1 AACACACCAATGCTCATAAGAGCTAATCCAACCGT
* * *
9059816 AACACATCAATGCTCATAAGAGCTAATCCAAACGA
1 AACACACCAATGCTCATAAGAGCTAATCCAACCGT
9059851 AACAC
1 AACAC
9059856 GTCAAATATA
Statistics
Matches: 59, Mismatches: 16, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
35 53 0.90
36 6 0.10
ACGTcount: A:0.41, C:0.26, G:0.11, T:0.22
Consensus pattern (35 bp):
AACACACCAATGCTCATAAGAGCTAATCCAACCGT
Found at i:9066224 original size:9 final size:9
Alignment explanation
Indices: 9066210--9066295 Score: 56
Period size: 9 Copynumber: 9.6 Consensus size: 9
9066200 CATGTGGTAA
9066210 AAAAATTAT
1 AAAAATTAT
9066219 -AAAA--AT
1 AAAAATTAT
*
9066225 AAAAATCAAT
1 AAAAAT-TAT
9066235 AAAAATTAT
1 AAAAATTAT
9066244 AAAAATTAT
1 AAAAATTAT
* * *
9066253 -TAAGTTTT
1 AAAAATTAT
9066261 AACAAA-TAT
1 AA-AAATTAT
9066270 AAAAAATTTATT
1 -AAAAA-TTA-T
9066282 AAAAATTAT
1 AAAAATTAT
9066291 AAAAA
1 AAAAA
9066296 AAAGCATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 20
0.69 0.08 0.23
Matches are distributed among these distances:
6 2 0.03
7 4 0.07
8 9 0.15
9 22 0.37
10 15 0.25
11 7 0.12
12 1 0.02
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:9066638 original size:19 final size:19
Alignment explanation
Indices: 9066616--9066662 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
9066606 TTTCTATATA
* *
9066616 TTTTATAATTTTTTACTAT
1 TTTTATAAATTTTTACGAT
9066635 TTTTATAAATTTTTACGAT
1 TTTTATAAATTTTTACGAT
*
9066654 TTTCATAAA
1 TTTTATAAA
9066663 AAAAATTTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (19 bp):
TTTTATAAATTTTTACGAT
Found at i:9066702 original size:19 final size:20
Alignment explanation
Indices: 9066678--9066731 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
9066668 TTTCTATTTT
9066678 TTTAAT-ATTTTTATTAAAA
1 TTTAATAATTTTTATTAAAA
*
9066697 TTTAATAATTTTTA-TAAAT
1 TTTAATAATTTTTATTAAAA
* *
9066716 TTTATTGATTTTTATT
1 TTTAATAATTTTTATT
9066732 TTTATCATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 22 0.73
20 8 0.27
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (20 bp):
TTTAATAATTTTTATTAAAA
Found at i:9070731 original size:21 final size:20
Alignment explanation
Indices: 9070690--9070731 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
9070680 TTAAAATAGG
*
9070690 ATAAAATAAATAATTAGTTA
1 ATAAAATAAATAATTAATTA
9070710 ATAATAAT-AATAATTTAATTA
1 ATAA-AATAAATAA-TTAATTA
9070731 A
1 A
9070732 ATAACTATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (20 bp):
ATAAAATAAATAATTAATTA
Found at i:9077000 original size:84 final size:84
Alignment explanation
Indices: 9076912--9077104 Score: 255
Period size: 84 Copynumber: 2.3 Consensus size: 84
9076902 TTAATAGCAT
* * * *
9076912 AAATGATGAAAACCAAAACAGTAGAGTCAAGGAGTTTACCCCGAA-GAGACT-CAAGTTCAGACG
1 AAATGGTGATAACCAAAACAGTAGAGTCAAGGAGTGTACCCC-AATGAGACTGAAAGTTC-GACG
9076975 AAGAGAAATTGTTGACAACCA
64 AAGAGAAATTGTTGACAACCA
* * * * *
9076996 AAATGGTGATAACCAAAACGGTAAAGTCAAGGAGTGTACTCCAATGAGACTGAAATTTCGGCGAA
1 AAATGGTGATAACCAAAACAGTAGAGTCAAGGAGTGTACCCCAATGAGACTGAAAGTTCGACGAA
*
9077061 GAGTAATTGTTGACAACCA
66 GAGAAATTGTTGACAACCA
*
9077080 AAATGGTGATAACAAAAACAGTAGA
1 AAATGGTGATAACCAAAACAGTAGA
9077105 ATTGAGGAAC
Statistics
Matches: 94, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
83 2 0.02
84 87 0.93
85 5 0.05
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.19
Consensus pattern (84 bp):
AAATGGTGATAACCAAAACAGTAGAGTCAAGGAGTGTACCCCAATGAGACTGAAAGTTCGACGAA
GAGAAATTGTTGACAACCA
Found at i:9077143 original size:84 final size:84
Alignment explanation
Indices: 9076861--9077161 Score: 222
Period size: 84 Copynumber: 3.6 Consensus size: 84
9076851 AAGTTGAGGC
** * * * * * *
9076861 CTGTACTCCAAGGAGACTCAAGTTCAAGCAAAGGGT-ATATGTT-A-ATAGCATAAATGATGAAA
1 CTGTACTCCAAGGAGACGAAAGTTCAGGCGAAGAGTAAT-TGTTGACA-ACCA-AAATGGTGATA
* *
9076923 ACCAAAACAGTAGAGTCAAGGA
63 ACAAAAACAGTAAAGTCAAGGA
* * * ** * *
9076945 GTTTACCCCGAA-GAGACTCAAGTTCAGACGAAGAGAAATTGTTGACAACCAAAATGGTGATAAC
1 CTGTACTCC-AAGGAGACGAAAGTTCAGGCGAAGAGTAATTGTTGACAACCAAAATGGTGATAAC
* *
9077009 CAAAACGGTAAAGTCAAGGA
65 AAAAACAGTAAAGTCAAGGA
* * *
9077029 GTGTACTCCAATGAGACTGAAATTTC-GGCGAAGAGTAATTGTTGACAACCAAAATGGTGATAAC
1 CTGTACTCCAAGGAGAC-GAAAGTTCAGGCGAAGAGTAATTGTTGACAACCAAAATGGTGATAAC
**
9077093 AAAAACAGTAGAA-TTGAGGAA
65 AAAAACAGTA-AAGTCAAGG-A
* * * *
9077114 CT-TACTCCAAGGATAC-ACGAGTTCAGGCGAAAATTAATTGTTGACAAC
1 CTGTACTCCAAGGAGACGA-AAGTTCAGGCGAAGAGTAATTGTTGACAAC
9077162 ATAGATGATC
Statistics
Matches: 176, Mismatches: 31, Indels: 20
0.78 0.14 0.09
Matches are distributed among these distances:
82 1 0.01
83 6 0.03
84 151 0.86
85 17 0.10
86 1 0.01
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.21
Consensus pattern (84 bp):
CTGTACTCCAAGGAGACGAAAGTTCAGGCGAAGAGTAATTGTTGACAACCAAAATGGTGATAACA
AAAACAGTAAAGTCAAGGA
Found at i:9077263 original size:81 final size:81
Alignment explanation
Indices: 9077203--9077568 Score: 651
Period size: 81 Copynumber: 4.5 Consensus size: 81
9077193 AGGAGTTTAG
* * * *
9077203 TCCAAGGAAACTTGAGTCCTGCCAAAGAAATCTCGACAACAGAAATTCTGATGATCAAAATAGTA
1 TCCAACGACACTTGAGTCCTGCCAAAGAACTCTTGACAACAGAAATTCTGATGATCAAAATAGTA
9077268 GAGGTGAGGACTCTGC
66 GAGGTGAGGACTCTGC
9077284 TCCAACGACACTTGAGTCCTGCCAAAGAACTCTTGACAACAGAAATTCTGATGATCAAAATAGTA
1 TCCAACGACACTTGAGTCCTGCCAAAGAACTCTTGACAACAGAAATTCTGATGATCAAAATAGTA
9077349 GAGGTGAGGACTCTGC
66 GAGGTGAGGACTCTGC
9077365 TCCAACGACACTTGAGTCCTGCCAAAGAACTCTTGACAACAGAAATTCTGATGATCAAAATAGTA
1 TCCAACGACACTTGAGTCCTGCCAAAGAACTCTTGACAACAGAAATTCTGATGATCAAAATAGTA
9077430 GAGGTGAGGACTCTGC
66 GAGGTGAGGACTCTGC
9077446 TCCAACGACACTTGAGTCCTGCCAAAGAACTCTTGACAACAGAAATTCTGATGATCAAAATAGTA
1 TCCAACGACACTTGAGTCCTGCCAAAGAACTCTTGACAACAGAAATTCTGATGATCAAAATAGTA
*
9077511 GAGGTGAGGACACTGC
66 GAGGTGAGGACTCTGC
* * * *
9077527 TCCAACAAAACTTGAGTCCTGCCGAAGAGCTCTTGACAACAG
1 TCCAACGACACTTGAGTCCTGCCAAAGAACTCTTGACAACAG
9077569 CCTCTTATCT
Statistics
Matches: 276, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
81 276 1.00
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.21
Consensus pattern (81 bp):
TCCAACGACACTTGAGTCCTGCCAAAGAACTCTTGACAACAGAAATTCTGATGATCAAAATAGTA
GAGGTGAGGACTCTGC
Found at i:9091389 original size:14 final size:15
Alignment explanation
Indices: 9091342--9091394 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 15
9091332 AATCCAAGTC
9091342 AGATAAA-AAATTTGA
1 AGATAAATAAA-TTGA
*
9091357 AGAAAAAT-AATTGA
1 AGATAAATAAATTGA
9091371 A-ATAAATAAATT-A
1 AGATAAATAAATTGA
*
9091384 AGATAAGTAAA
1 AGATAAATAAA
9091395 ATAGAATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
13 7 0.22
14 17 0.53
15 8 0.25
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.25
Consensus pattern (15 bp):
AGATAAATAAATTGA
Found at i:9091528 original size:28 final size:28
Alignment explanation
Indices: 9091496--9091554 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
9091486 ACAAGAAGAA
* **
9091496 TCCACGACCCCCTTAAGTGACTCTAATT
1 TCCACAACCCCCTTAAACGACTCTAATT
9091524 TCCACAACCCCCTTAAACGACTCTAATT
1 TCCACAACCCCCTTAAACGACTCTAATT
9091552 TCC
1 TCC
9091555 CCTCCAAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.27, C:0.39, G:0.07, T:0.27
Consensus pattern (28 bp):
TCCACAACCCCCTTAAACGACTCTAATT
Found at i:9091684 original size:27 final size:25
Alignment explanation
Indices: 9091632--9091684 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 25
9091622 AAACTCTTCT
*
9091632 AAAAGAAACTCAAGAGAAATTCTTG
1 AAAAGAAACTCAAGAGAAATTATTG
*
9091657 AAAAGAAAACTCAAAGAGAATTTATTG
1 AAAAG-AAACTC-AAGAGAAATTATTG
9091684 A
1 A
9091685 CTCAAAAGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 6 0.25
27 13 0.54
ACGTcount: A:0.55, C:0.09, G:0.15, T:0.21
Consensus pattern (25 bp):
AAAAGAAACTCAAGAGAAATTATTG
Found at i:9100055 original size:30 final size:30
Alignment explanation
Indices: 9100006--9100066 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
9099996 GAGTTTTCAG
* * **
9100006 GATCCACACGGGCATGCCACATGCCCATGT
1 GATCCACACGAGCAGGCCACACACCCATGT
*
9100036 GATCCACACGAGTAGGCCACACACCCATGT
1 GATCCACACGAGCAGGCCACACACCCATGT
9100066 G
1 G
9100067 CTAGCCCATG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.26, C:0.36, G:0.23, T:0.15
Consensus pattern (30 bp):
GATCCACACGAGCAGGCCACACACCCATGT
Found at i:9104397 original size:199 final size:199
Alignment explanation
Indices: 9104038--9104397 Score: 578
Period size: 199 Copynumber: 1.8 Consensus size: 199
9104028 TGACCCATAT
* * *
9104038 GGCCTGGCCACATGGGTGTGTGGAGCACACGGCCTGACCACACGGGCGTGTGGGATCTCACATGG
1 GGCCTGGCCACACGGGTGTGTGGAGCACACGGCCTGACCACACGGGCGTATGGAATCTCACATGG
*
9104103 GCATGGGAGAAGTGAAGGAAAACACACATGGCCTGGCGACATGGCCATGTGACCCACATAGCCTG
66 GCATGGGAGAAGTGAAGGAAAACACACATGGCCTGGCGACATGGCCATGTGACCCACACAGCCTG
* * *
9104168 GGCACACGGGCGTGTCCTAGGCCGTGTGAAACCCGGAGCTAATTTTTTTTCAAAGTTAGAGAGTT
131 GACACACGGGCATGTCCTAGGCCATGTGAAACCCGGAGCTAATTTTTTTTCAAAGTTAGAGAGTT
9104233 ACAC
196 ACAC
* * *
9104237 GGCCTGGCTACACGGGTGTGTGGAGCACACGGCCTGACCACATGGGCGTATGGAATTTCACATGG
1 GGCCTGGCCACACGGGTGTGTGGAGCACACGGCCTGACCACACGGGCGTATGGAATCTCACATGG
**
9104302 GTGTGGGAGAAGTGAAGGAAAACACACATGGCCTGGCGACATGGCCATGTGACCCACACAGCCTG
66 GCATGGGAGAAGTGAAGGAAAACACACATGGCCTGGCGACATGGCCATGTGACCCACACAGCCTG
* *
9104367 GACTCACGGGCATGTCC-ACGTCCATGTGAAA
131 GACACACGGGCATGTCCTA-GGCCATGTGAAA
9104398 ACTGGGTTAA
Statistics
Matches: 146, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
198 1 0.01
199 145 0.99
ACGTcount: A:0.24, C:0.25, G:0.32, T:0.18
Consensus pattern (199 bp):
GGCCTGGCCACACGGGTGTGTGGAGCACACGGCCTGACCACACGGGCGTATGGAATCTCACATGG
GCATGGGAGAAGTGAAGGAAAACACACATGGCCTGGCGACATGGCCATGTGACCCACACAGCCTG
GACACACGGGCATGTCCTAGGCCATGTGAAACCCGGAGCTAATTTTTTTTCAAAGTTAGAGAGTT
ACAC
Found at i:9104476 original size:22 final size:20
Alignment explanation
Indices: 9104418--9104469 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 20
9104408 TCACCCCCAA
*
9104418 TTTTATTTTATTTTATTTAT
1 TTTTATTTTATATTATTTAT
*
9104438 TTTTAATTTTTGTATTATTTAT
1 TTTT-A-TTTTATATTATTTAT
9104460 TTTTATTTTA
1 TTTTATTTTA
9104470 CTAATTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 8 0.30
21 2 0.07
22 17 0.63
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTATTTTATATTATTTAT
Found at i:9104646 original size:3 final size:3
Alignment explanation
Indices: 9104640--9104669 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
9104630 ATTATTGGGT
9104640 TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
9104670 CTTTCTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:9108635 original size:12 final size:12
Alignment explanation
Indices: 9108618--9108642 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9108608 AGGCTGTTAT
9108618 ATGGCCTAGCAC
1 ATGGCCTAGCAC
9108630 ATGGCCTAGCAC
1 ATGGCCTAGCAC
9108642 A
1 A
9108643 CGGGCGTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.32, G:0.24, T:0.16
Consensus pattern (12 bp):
ATGGCCTAGCAC
Found at i:9116007 original size:22 final size:22
Alignment explanation
Indices: 9115982--9116025 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
9115972 ATCAGAACAG
*
9115982 GAGCCTGAGTTAGAACAGACTT
1 GAGCCTGAGTCAGAACAGACTT
*
9116004 GAGCCTGAGTCAGAATAGACTT
1 GAGCCTGAGTCAGAACAGACTT
9116026 AAGCTTCTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (22 bp):
GAGCCTGAGTCAGAACAGACTT
Found at i:9121129 original size:15 final size:15
Alignment explanation
Indices: 9121109--9121140 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
9121099 TGAAAAAAAG
*
9121109 AGGAAATGTTAGGTT
1 AGGAAATGATAGGTT
9121124 AGGAAATGATAGGTT
1 AGGAAATGATAGGTT
9121139 AG
1 AG
9121141 TGGATTTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.34, T:0.28
Consensus pattern (15 bp):
AGGAAATGATAGGTT
Found at i:9124732 original size:21 final size:22
Alignment explanation
Indices: 9124690--9124733 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
9124680 TTTAATAGCT
* **
9124690 CTCCAAATCCCTCTAATTACTC
1 CTCCAAATCCCTCAAAACACTC
9124712 CTCC-AATCCCTCAAAACACTC
1 CTCCAAATCCCTCAAAACACTC
9124733 C
1 C
9124734 CACTACCCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.30, C:0.45, G:0.00, T:0.25
Consensus pattern (22 bp):
CTCCAAATCCCTCAAAACACTC
Found at i:9129679 original size:42 final size:42
Alignment explanation
Indices: 9129632--9129716 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
9129622 CCACAACCTC
* *
9129632 TAGTACCCCGTCCATGAGTACCACTTGCACTCATCGTGGATT
1 TAGTACCCCGTCCATGAGCACCACTTGCACTCATCGTAGATT
*
9129674 TAGTACCCCGTCCATGAGCAGCACTTGCACTCATCGTAGATT
1 TAGTACCCCGTCCATGAGCACCACTTGCACTCATCGTAGATT
9129716 T
1 T
9129717 CAGAATTTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (42 bp):
TAGTACCCCGTCCATGAGCACCACTTGCACTCATCGTAGATT
Found at i:9137807 original size:20 final size:20
Alignment explanation
Indices: 9137784--9137852 Score: 50
Period size: 20 Copynumber: 3.1 Consensus size: 20
9137774 AGTTCCGAAC
9137784 TCGTTGAGTTGAGTCCGAGT
1 TCGTTGAGTTGAGTCCGAGT
*
9137804 TCG-TGAGATGTAAGTAGGCATCCGAGC
1 TCGTTGAG-T-T--G-A-G--TCCGAGT
9137831 TCGTTGAGTTGAGTCCGAGT
1 TCGTTGAGTTGAGTCCGAGT
9137851 TC
1 TC
9137853 ACTTATGGGC
Statistics
Matches: 38, Mismatches: 2, Indels: 18
0.66 0.03 0.31
Matches are distributed among these distances:
19 4 0.11
20 12 0.32
21 1 0.03
22 1 0.03
23 2 0.05
24 2 0.05
25 1 0.03
26 1 0.03
27 10 0.26
28 4 0.11
ACGTcount: A:0.19, C:0.17, G:0.33, T:0.30
Consensus pattern (20 bp):
TCGTTGAGTTGAGTCCGAGT
Found at i:9147562 original size:30 final size:29
Alignment explanation
Indices: 9147528--9147607 Score: 124
Period size: 30 Copynumber: 2.7 Consensus size: 29
9147518 CTTCACAAGC
*
9147528 CACTCAATGAAACCATCCTTACCTAAGCAA
1 CACTCAAT-AAACCATCCTCACCTAAGCAA
9147558 CACTCCAATAAACCATCCTCACCTAAGCAA
1 CACT-CAATAAACCATCCTCACCTAAGCAA
9147588 CACTCTAATAAACCATCCTC
1 CACTC-AATAAACCATCCTC
9147608 TTCACCGACT
Statistics
Matches: 47, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
29 1 0.02
30 42 0.89
31 4 0.09
ACGTcount: A:0.39, C:0.38, G:0.04, T:0.20
Consensus pattern (29 bp):
CACTCAATAAACCATCCTCACCTAAGCAA
Found at i:9148607 original size:21 final size:18
Alignment explanation
Indices: 9148567--9148602 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
9148557 CTTCCTACTT
9148567 GTTCATCATTACAAATAA
1 GTTCATCATTACAAATAA
9148585 GTTCATCATTACAAATAA
1 GTTCATCATTACAAATAA
9148603 TAAGTCAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.33
Consensus pattern (18 bp):
GTTCATCATTACAAATAA
Found at i:9150600 original size:69 final size:69
Alignment explanation
Indices: 9150489--9150626 Score: 240
Period size: 69 Copynumber: 2.0 Consensus size: 69
9150479 GCGTTTTTTA
** * *
9150489 AAAAAACGCCGCTAAAGACCATGACTTTTAGCGGTGTTTTTTTCTCAAACGTCGCCAAAAACCAC
1 AAAAAACGCCGCTAAAGACCATGACTTTTAGCGACGCTTTTTTCTCAAACGTCCCCAAAAACCAC
9150554 AACT
66 AACT
9150558 AAAAAACGCCGCTAAAGACCATGACTTTTAGCGACGCTTTTTTCTCAAACGTCCCCAAAAACCAC
1 AAAAAACGCCGCTAAAGACCATGACTTTTAGCGACGCTTTTTTCTCAAACGTCCCCAAAAACCAC
9150623 AACT
66 AACT
9150627 CTTAGCGGCA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.36, C:0.28, G:0.13, T:0.23
Consensus pattern (69 bp):
AAAAAACGCCGCTAAAGACCATGACTTTTAGCGACGCTTTTTTCTCAAACGTCCCCAAAAACCAC
AACT
Found at i:9150711 original size:41 final size:42
Alignment explanation
Indices: 9150561--9150705 Score: 116
Period size: 43 Copynumber: 3.4 Consensus size: 42
9150551 CACAACTAAA
* * * * *
9150561 AAACGCCGCTAAAGACCATGACTTTTAGCGACGCTTTTTTCTC
1 AAACGCCGCTAAAAACCACGAC-TCTAGCGACGCTTTTCTCAC
* * * * *
9150604 AAACGTCC-CCAAAAACCACAACTCTTAGCGGCAC-TTTCTTCGC
1 AAACG-CCGCTAAAAACCACGACTC-TAGCGACGCTTTTC-TCAC
* *
9150647 AAGCGCCGCTAAAGACCACGAC-CTAGCGACGCTTTTCTCAC
1 AAACGCCGCTAAAAACCACGACTCTAGCGACGCTTTTCTCAC
*
9150688 AAACGCCACTAAAAACCA
1 AAACGCCGCTAAAAACCA
9150706 TGACCTTTAA
Statistics
Matches: 78, Mismatches: 19, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
41 25 0.32
42 11 0.14
43 40 0.51
44 2 0.03
ACGTcount: A:0.31, C:0.34, G:0.14, T:0.21
Consensus pattern (42 bp):
AAACGCCGCTAAAAACCACGACTCTAGCGACGCTTTTCTCAC
Found at i:9155147 original size:21 final size:22
Alignment explanation
Indices: 9155118--9155181 Score: 64
Period size: 21 Copynumber: 3.0 Consensus size: 22
9155108 ATTTTAGTCC
* *
9155118 CTTCATCTTCACTC-TCTTTTT
1 CTTCCTCTTCACTCTTCTTCTT
*
9155139 CTTCCTCTTC-TTCTTCTTCTT
1 CTTCCTCTTCACTCTTCTTCTT
9155160 CTTCCTCGTTCAC-CTTC-TCTT
1 CTTCCTC-TTCACTCTTCTTCTT
9155181 C
1 C
9155182 AACATCTATT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
20 2 0.06
21 27 0.75
22 7 0.19
ACGTcount: A:0.05, C:0.39, G:0.02, T:0.55
Consensus pattern (22 bp):
CTTCCTCTTCACTCTTCTTCTT
Found at i:9155731 original size:14 final size:14
Alignment explanation
Indices: 9155693--9155738 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
9155683 CACTAAAAAC
9155693 TAAACCTTAAACCA
1 TAAACCTTAAACCA
**
9155707 TAAGTCTTAAACCA
1 TAAACCTTAAACCA
* *
9155721 TAAACCCTAAACTA
1 TAAACCTTAAACCA
9155735 TAAA
1 TAAA
9155739 TATAATTAAC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.50, C:0.24, G:0.02, T:0.24
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:9156563 original size:41 final size:41
Alignment explanation
Indices: 9156505--9156770 Score: 334
Period size: 41 Copynumber: 6.5 Consensus size: 41
9156495 GGTTATATGA
* * * * *
9156505 CTTTTAGTGGCGTTTTACCAAAAGTGCCGCTAATGATTTGG
1 CTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCTGG
* *
9156546 TTTTTAGTGGCGTTTTACAAAAAGCGCCGCTAATGCTCTGG
1 CTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCTGG
* *
9156587 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAGTGCTCTGG
1 CTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCTGG
* * *
9156628 CTTATAGCGGCGTTTTACAAAAAGCACTGCTAATGCTCTGG
1 CTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCTGG
* * *
9156669 CTTCTAGCGGCTTTTTACAAAAAGTGCCGCTAATGCTCTGG
1 CTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCTGG
* * * * **
9156710 CTTCTAGCGGCGTTTTACTAAAAGCGTCGCTAATGCTTTAA
1 CTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCTGG
*
9156751 TTTTTAGCGGCGTTTTACAA
1 CTTTTAGCGGCGTTTTACAA
9156771 TTTTTGCGGC
Statistics
Matches: 196, Mismatches: 29, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 196 1.00
ACGTcount: A:0.22, C:0.21, G:0.23, T:0.33
Consensus pattern (41 bp):
CTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCTGG
Found at i:9156779 original size:19 final size:20
Alignment explanation
Indices: 9156749--9156786 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
9156739 CTAATGCTTT
9156749 AATTTTTAGCGGCGTTTTAC
1 AATTTTTAGCGGCGTTTTAC
9156769 AATTTTT-GCGGCGTTTTA
1 AATTTTTAGCGGCGTTTTA
9156787 TGAAGCCCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.18, C:0.13, G:0.21, T:0.47
Consensus pattern (20 bp):
AATTTTTAGCGGCGTTTTAC
Found at i:9157100 original size:23 final size:25
Alignment explanation
Indices: 9157065--9157117 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
9157055 AATTATTAAC
9157065 ATAAAAAATATATATAAGTACAATA
1 ATAAAAAATATATATAAGTACAATA
9157090 ATAAAAAATATATATAAGTACAATA
1 ATAAAAAATATATATAAGTACAATA
9157115 ATA
1 ATA
9157118 TTTCTTCCAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (25 bp):
ATAAAAAATATATATAAGTACAATA
Found at i:9157118 original size:16 final size:15
Alignment explanation
Indices: 9157071--9157118 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 15
9157061 TAACATAAAA
9157071 AATATATATAAGTAC
1 AATATATATAAGTAC
9157086 AATA-ATA-AA--A-
1 AATATATATAAGTAC
9157096 AATATATATAAGTAC
1 AATATATATAAGTAC
9157111 AATA-ATAT
1 AATATATAT
9157119 TTCTTCCACA
Statistics
Matches: 28, Mismatches: 0, Indels: 11
0.72 0.00 0.28
Matches are distributed among these distances:
10 4 0.14
11 4 0.14
12 2 0.07
13 2 0.07
14 8 0.29
15 8 0.29
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.31
Consensus pattern (15 bp):
AATATATATAAGTAC
Found at i:9160983 original size:143 final size:143
Alignment explanation
Indices: 9160791--9161124 Score: 461
Period size: 143 Copynumber: 2.3 Consensus size: 143
9160781 GTTTGCAGCC
* * ** * * *** * *
9160791 TTCAATCTGCTTCACTGTAACTTCAAGAAGATAAGATTTGTCATAATTTGTAGCTTTAATCTGTC
1 TTCAATCTCCTCCACTGCGACTTCAGGGAGATAAGATTCACCATGATTTGTAACTTTAATCTGTC
* * * * *
9160856 CCACTATAACTTCAGGGGAATGAGATCCGTTATCTTTAGTCTGCTCCGCTGTAATTTTAGGGAGA
66 CCACTACAACTTCAAGGGAATGAGATCCGTTATCTTTAGTCTGCTCCGCTGCAACTTCAGGGAGA
9160921 TAAGACTTGTGGA
131 TAAGACTTGTGGA
* * *
9160934 TTCAATCTGCTCCATTGCGGCTTCAGGGAGATAAGATTCACCATGATTTGTAACTTTAATCTGTC
1 TTCAATCTCCTCCACTGCGACTTCAGGGAGATAAGATTCACCATGATTTGTAACTTTAATCTGTC
*
9160999 CCACTACAACTTCAAGGGAATGAGATTCGTTATCTTTAGTCTGCTCCGCTGCAACTTCAGGGAGA
66 CCACTACAACTTCAAGGGAATGAGATCCGTTATCTTTAGTCTGCTCCGCTGCAACTTCAGGGAGA
*
9161064 TAAGACTTGTGGC
131 TAAGACTTGTGGA
* *
9161077 TTCAATCTCCTCCACTGTGACTTCTGGGAGATAAGATTCACCATGATT
1 TTCAATCTCCTCCACTGCGACTTCAGGGAGATAAGATTCACCATGATT
9161125 ACTCAATCTG
Statistics
Matches: 167, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
143 167 1.00
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.34
Consensus pattern (143 bp):
TTCAATCTCCTCCACTGCGACTTCAGGGAGATAAGATTCACCATGATTTGTAACTTTAATCTGTC
CCACTACAACTTCAAGGGAATGAGATCCGTTATCTTTAGTCTGCTCCGCTGCAACTTCAGGGAGA
TAAGACTTGTGGA
Found at i:9163991 original size:40 final size:41
Alignment explanation
Indices: 9163895--9163999 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 41
9163885 TGAATGATGT
*
9163895 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
* * * *
9163935 CCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTATAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACCATAA
*
9163975 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
9164000 AACGAGTAGC
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
39 1 0.02
40 46 0.84
41 8 0.15
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
Found at i:9173526 original size:104 final size:104
Alignment explanation
Indices: 9173346--9173770 Score: 663
Period size: 104 Copynumber: 4.1 Consensus size: 104
9173336 TGTTGTAAAT
* * *
9173346 TTAGAGGCTTCAAGATTTTCTTGTAAGTAATGAATCAAAGCTCTTACATTGTAGAATGAGTTTGA
1 TTAGAGGTTTCAAGATTTTCATGTAAATAATGAATCAAAGCTCTTACATTGTAGAATGAGTTTGA
*
9173411 TTTTGATTCATCATTTTCGCTTAAACTTGAGTATTAAAC
66 TTTTGATTCATCATTTTCGCTTAAACTTGAGTATTTAAC
* *
9173450 TTAGAGGTTTAAAAATTTTCATGTAAATAATGAATCAAAGCTCTTACATTGTAGAATGAGTTTGA
1 TTAGAGGTTTCAAGATTTTCATGTAAATAATGAATCAAAGCTCTTACATTGTAGAATGAGTTTGA
*
9173515 TTTTGATTCATCATTTTCGCTTAAACTTGAATATTTAAC
66 TTTTGATTCATCATTTTCGCTTAAACTTGAGTATTTAAC
* *
9173554 TTAGAGGTTTCAAGATTTTCATGTAAACAAGGAATCAAAGCTCTTACATTGTAGAATGAGTTTGA
1 TTAGAGGTTTCAAGATTTTCATGTAAATAATGAATCAAAGCTCTTACATTGTAGAATGAGTTTGA
9173619 TTTTGATTCATCATTTTCGCTTAAACTTGAGTATTTAAC
66 TTTTGATTCATCATTTTCGCTTAAACTTGAGTATTTAAC
* * * * *
9173658 TTAGAGGTTTCAAGATTTTTATGTAAATAATTAATCAAAGCTCTTACATTGTAGCAGGAGTTTGT
1 TTAGAGGTTTCAAGATTTTCATGTAAATAATGAATCAAAGCTCTTACATTGTAGAATGAGTTTGA
* * * *
9173723 TTTTGA-TCTGTAATTTTCGCATAAACTCGAGTATTTAAC
66 TTTTGATTC-ATCATTTTCGCTTAAACTTGAGTATTTAAC
*
9173762 TTAGTGGTT
1 TTAGAGGTT
9173771 GGTGCCTGAT
Statistics
Matches: 296, Mismatches: 24, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
103 2 0.01
104 294 0.99
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.41
Consensus pattern (104 bp):
TTAGAGGTTTCAAGATTTTCATGTAAATAATGAATCAAAGCTCTTACATTGTAGAATGAGTTTGA
TTTTGATTCATCATTTTCGCTTAAACTTGAGTATTTAAC
Found at i:9175816 original size:91 final size:91
Alignment explanation
Indices: 9175678--9175885 Score: 335
Period size: 91 Copynumber: 2.3 Consensus size: 91
9175668 TTGATTTTAG
* *
9175678 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
9175743 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
*
9175770 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
9175835 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
9175861 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
9175886 GTTATAATTA
Statistics
Matches: 108, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
91 92 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:9175854 original size:26 final size:28
Alignment explanation
Indices: 9175800--9175860 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
9175790 TATTATCAAG
* *
9175800 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
9175828 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
9175854 AATTATA
1 AATTATA
9175861 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:9175860 original size:44 final size:43
Alignment explanation
Indices: 9175718--9175860 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
9175708 GAATTTTATG
* *
9175718 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
9175762 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
9175809 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
9175853 AAATTATA
1 AAATTATA
9175861 CAAATTCATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 21 0.28
45 12 0.16
46 11 0.14
47 13 0.17
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Found at i:9176050 original size:18 final size:17
Alignment explanation
Indices: 9176022--9176056 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
9176012 ATTATTAAGA
*
9176022 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
9176039 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
9176057 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:9176283 original size:44 final size:45
Alignment explanation
Indices: 9176218--9176308 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
9176208 ACCTCTATTC
* * *
9176218 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
9176262 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
9176307 CA
1 CA
9176309 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:9176323 original size:17 final size:16
Alignment explanation
Indices: 9176289--9176341 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
9176279 GATTAGCTAT
9176289 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
9176305 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
9176322 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
9176338 TACA
1 TACA
9176342 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:9179109 original size:20 final size:21
Alignment explanation
Indices: 9179070--9179109 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
9179060 TTTCTTCCCT
*
9179070 CAAAAACACCACTTTCTCCTA
1 CAAAAACACCACTTTATCCTA
*
9179091 CAAAAACA-CATTTTATCCT
1 CAAAAACACCACTTTATCCT
9179110 GAAACTCTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.40, C:0.33, G:0.00, T:0.28
Consensus pattern (21 bp):
CAAAAACACCACTTTATCCTA
Found at i:9190771 original size:43 final size:42
Alignment explanation
Indices: 9190704--9190799 Score: 129
Period size: 43 Copynumber: 2.3 Consensus size: 42
9190694 AGACCAACAT
* * * *
9190704 TGGCATTGTATTTGATTTCGTGTAAGACCCTGTCTGGGACAG
1 TGGCATCGTATTTGATTACATGTAAGACCATGTCTGGGACAG
*
9190746 TGGCATCGATATTTGATTACATGTAAGACCATGTCTGGGACAT
1 TGGCATCG-TATTTGATTACATGTAAGACCATGTCTGGGACAG
*
9190789 TGGCATTGTAT
1 TGGCATCGTAT
9190800 GAGCTTTCCG
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 10 0.21
43 37 0.79
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (42 bp):
TGGCATCGTATTTGATTACATGTAAGACCATGTCTGGGACAG
Found at i:9194442 original size:27 final size:28
Alignment explanation
Indices: 9194412--9194465 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
9194402 TCTAAATTCT
*
9194412 TACTTTAATTA-TAAAATAATTAATTTG
1 TACTTGAATTATTAAAATAATTAATTTG
* *
9194439 TACTTGAATTATTAACATATTTAATTT
1 TACTTGAATTATTAAAATAATTAATTT
9194466 TAATTATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.41, C:0.06, G:0.04, T:0.50
Consensus pattern (28 bp):
TACTTGAATTATTAAAATAATTAATTTG
Found at i:9206524 original size:15 final size:15
Alignment explanation
Indices: 9206506--9206569 Score: 76
Period size: 15 Copynumber: 4.3 Consensus size: 15
9206496 GACAAGAAGA
*
9206506 CCAAAATAAAGAAAT
1 CCAAGATAAAGAAAT
*
9206521 CCAAGACAGAA-AAAT
1 CCAAGATA-AAGAAAT
*
9206536 CCAAGATGAAGAAAT
1 CCAAGATAAAGAAAT
*
9206551 CCAAGATATAGAAAT
1 CCAAGATAAAGAAAT
9206566 CCAA
1 CCAA
9206570 TATGTAATAC
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
14 2 0.05
15 37 0.90
16 2 0.05
ACGTcount: A:0.58, C:0.17, G:0.12, T:0.12
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:9210602 original size:45 final size:45
Alignment explanation
Indices: 9210530--9210618 Score: 124
Period size: 45 Copynumber: 2.0 Consensus size: 45
9210520 ACTCGATGCT
** * *
9210530 TCACATATATCACGAACTTGGATCAACTCAACAAGTTCGGATTTC
1 TCACATATATCACGAACTCAGACCAACTCAACAAGCTCGGATTTC
* *
9210575 TCACATATATCACGAACTCAGACCAACTCGACGAGCTCGGATTT
1 TCACATATATCACGAACTCAGACCAACTCAACAAGCTCGGATTT
9210619 TCTAAATTCC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.26
Consensus pattern (45 bp):
TCACATATATCACGAACTCAGACCAACTCAACAAGCTCGGATTTC
Found at i:9216047 original size:78 final size:78
Alignment explanation
Indices: 9215918--9216229 Score: 606
Period size: 78 Copynumber: 4.0 Consensus size: 78
9215908 ATTGTTCCCA
9215918 TGAGGATAGGATCAAGGCACAAAGTGGTCAAGTTATTATAATAAAATACGATTAATGCTATGCCA
1 TGAGGATAGGATCAAGGCACAAAGTGGTCAAGTTATTATAATAAAATACGATTAATGCTATGCCA
9215983 AAGTCAATGATAC
66 AAGTCAATGATAC
9215996 TGAGGATAGGATCAAGGCACAAAGTGGTCAAGTTATTATAATAAAATACGATTAATGCTATGCCA
1 TGAGGATAGGATCAAGGCACAAAGTGGTCAAGTTATTATAATAAAATACGATTAATGCTATGCCA
9216061 AAGTCAATGATAC
66 AAGTCAATGATAC
9216074 TGAGGATAGGATCAAGGCACAAAGTGGTCAAGTTATTATAATAAAATACGATTAATGCTATGCCA
1 TGAGGATAGGATCAAGGCACAAAGTGGTCAAGTTATTATAATAAAATACGATTAATGCTATGCCA
9216139 AAGTCAATGATAC
66 AAGTCAATGATAC
*
9216152 TGAGGATAGGATCAAGGCACAAAGTGGTCAAGTTATTATAATAAAATACGATTAATGCAATGCCA
1 TGAGGATAGGATCAAGGCACAAAGTGGTCAAGTTATTATAATAAAATACGATTAATGCTATGCCA
*
9216217 AAGTTAATGATAC
66 AAGTCAATGATAC
9216230 ATTTGTAGTG
Statistics
Matches: 232, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 232 1.00
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.26
Consensus pattern (78 bp):
TGAGGATAGGATCAAGGCACAAAGTGGTCAAGTTATTATAATAAAATACGATTAATGCTATGCCA
AAGTCAATGATAC
Found at i:9223128 original size:59 final size:59
Alignment explanation
Indices: 9223056--9223173 Score: 173
Period size: 59 Copynumber: 2.0 Consensus size: 59
9223046 GAATGTGTAG
* * *
9223056 ACTGTCCTTTTTTGTCCTCTCATCCCAACAAGAACCCTACGAGAAACTTTTAAGCCATT
1 ACTGCCCTTTTTTGTCCACTCATCACAACAAGAACCCTACGAGAAACTTTTAAGCCATT
* * * *
9223115 ACTGCCCTTTTTTGTCCACTCATTACAACAAGAACCTTATGATAAACTTTTAAGCCATT
1 ACTGCCCTTTTTTGTCCACTCATCACAACAAGAACCCTACGAGAAACTTTTAAGCCATT
9223174 TAACTCAATG
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (59 bp):
ACTGCCCTTTTTTGTCCACTCATCACAACAAGAACCCTACGAGAAACTTTTAAGCCATT
Found at i:9224326 original size:5 final size:5
Alignment explanation
Indices: 9224316--9224340 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
9224306 TTTAACCAAG
9224316 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
9224341 ATTTCAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:9235084 original size:43 final size:43
Alignment explanation
Indices: 9234953--9235105 Score: 175
Period size: 43 Copynumber: 3.6 Consensus size: 43
9234943 CCATACCAAC
* * * *
9234953 GCCATATCCTAGATATGGTCTTACATGT-AATTTCGTATTGAT
1 GCCATATCCCAGATATGGTCTTACATGTAAATCTCATATCGAT
* * * * *
9234995 TCCAATAGCCCAGCTATGGTCTTACACG-AAATCACATATCGAT
1 GCC-ATATCCCAGATATGGTCTTACATGTAAATCTCATATCGAT
* *
9235038 GCCATATCCCAGATATGGGCTTACATGTAAATCTCACATCGAT
1 GCCATATCCCAGATATGGTCTTACATGTAAATCTCATATCGAT
*
9235081 GCCATATCCCAGATATAGTCTTACA
1 GCCATATCCCAGATATGGTCTTACA
9235106 CGTAGTCTTA
Statistics
Matches: 90, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
42 22 0.24
43 68 0.76
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (43 bp):
GCCATATCCCAGATATGGTCTTACATGTAAATCTCATATCGAT
Found at i:9255070 original size:40 final size:41
Alignment explanation
Indices: 9255011--9255402 Score: 415
Period size: 40 Copynumber: 9.8 Consensus size: 41
9255001 CATTTGAATG
* * *
9255011 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* *
9255051 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * * * *
9255091 ATACCCGGGTTAAGACCCGAAGGTAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* ** *
9255131 TTATATGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * * * *
9255171 ATACCCGGGTTAAGACCCGAAGGTAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* *
9255211 TTATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
9255251 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * * * *
9255291 ATACCCGGGTTAAGACCCGAAGGTAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* ** *
9255331 TTATATGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
9255371 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
9255403 TTGTGGTTAT
Statistics
Matches: 284, Mismatches: 60, Indels: 16
0.79 0.17 0.04
Matches are distributed among these distances:
39 6 0.02
40 269 0.95
41 9 0.03
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:9255230 original size:120 final size:120
Alignment explanation
Indices: 9255011--9255402 Score: 484
Period size: 120 Copynumber: 3.3 Consensus size: 120
9255001 CATTTGAATG
* * * * * * * * *
9255011 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTTATCCGGGCTAAGACCCGAAGGC
1 ATATACGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGT
* * * * * * * * * *
9255075 ATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGTAATTGTGCTAG-TGATT
65 AATTGTGCTAG-TGATTTTATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* *
9255131 TTATATGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGTA
1 ATATACGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGTA
9255196 ATTGTGCTAGTGATTTTATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
66 ATTGTGCTAGTGATTTTATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
9255251 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGTA
1 ATATACGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGTA
* *
9255316 ATTGTGCTAGTGATTTTATATGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
66 ATTGTGCTAGTGATTTTATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
** * *
9255371 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATACGGGCTAAGACCCGAAGGCATTTGTGC
9255403 TTGTGGTTAT
Statistics
Matches: 240, Mismatches: 29, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
119 2 0.01
120 233 0.97
121 5 0.02
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (120 bp):
ATATACGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGTA
ATTGTGCTAGTGATTTTATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:9256870 original size:48 final size:48
Alignment explanation
Indices: 9256810--9256914 Score: 138
Period size: 48 Copynumber: 2.2 Consensus size: 48
9256800 TACACGGGAC
* * * *
9256810 CTCATATTGATGCCAATGCCATATCCCAGATATGGTCTTACATAAGAT
1 CTCATACTGATGCCAATGCCATATCCCACATATGGCCTTACACAAGAT
* * *
9256858 CTCATACTGATGCCGATGTCATATCCCACATATGGCCTTACACGAGAT
1 CTCATACTGATGCCAATGCCATATCCCACATATGGCCTTACACAAGAT
9256906 CTCAATACT
1 CTC-ATACT
9256915 CACATGTCGT
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
48 44 0.90
49 5 0.10
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (48 bp):
CTCATACTGATGCCAATGCCATATCCCACATATGGCCTTACACAAGAT
Found at i:9257040 original size:6 final size:6
Alignment explanation
Indices: 9257029--9257820 Score: 1584
Period size: 6 Copynumber: 132.0 Consensus size: 6
9257019 AGAAAGTCAA
9257029 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9257077 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9257125 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9257173 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9257221 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9257269 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9257317 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9257365 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9257413 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9257461 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9257509 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9257557 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9257605 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9257653 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9257701 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9257749 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9257797 ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT
9257821 TTCATGCAAT
Statistics
Matches: 786, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 786 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
ATACAT
Found at i:9258808 original size:14 final size:13
Alignment explanation
Indices: 9258776--9258800 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9258766 CCAAACGTCC
9258776 AAATTTTCAAAAG
1 AAATTTTCAAAAG
9258789 AAATTTTCAAAA
1 AAATTTTCAAAA
9258801 AATCATTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCAAAAG
Found at i:9264052 original size:48 final size:49
Alignment explanation
Indices: 9263993--9264164 Score: 201
Period size: 48 Copynumber: 3.6 Consensus size: 49
9263983 ATGCCAAAAA
* * * * * *
9263993 CCCAGCTATGGTATTACACGAAG-TCTCATAATGGTGCCGATGCCATGT
1 CCCAGATATGGTCTTACACGAGGATCTCATAATGATGCCAATGCCATAT
* * *
9264041 CCCAGACATGGTCTTATACG-GGACCTCAT-ATCGATGCCAATGCCATAT
1 CCCAGATATGGTCTTACACGAGGATCTCATAAT-GATGCCAATGCCATAT
* *
9264089 CCCAGATATGGTCTTACA-TAGGATCTCATACTGATGCCAATGCCATAT
1 CCCAGATATGGTCTTACACGAGGATCTCATAATGATGCCAATGCCATAT
9264137 CCCAGATATGGTCTTACACG-GGATCTCA
1 CCCAGATATGGTCTTACACGAGGATCTCA
9264165 ATACTCACAT
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
47 3 0.03
48 100 0.96
49 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (49 bp):
CCCAGATATGGTCTTACACGAGGATCTCATAATGATGCCAATGCCATAT
Found at i:9264140 original size:96 final size:92
Alignment explanation
Indices: 9263934--9264164 Score: 261
Period size: 96 Copynumber: 2.5 Consensus size: 92
9263924 ACACATGAAA
* *
9263934 GATGCCAATGCCATGTCCCAGACGTGGTCTTACATGGGACCTC-TCATCGATGCCAAAAACCCAG
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGACCTCATCATCGATGCCAAAAACCCAG
* *
9263998 CTATGGTATTACACGAAGTCTCATAAT
66 ATATGGTATTACAAGAAGTCTCATAAT
* * * *
9264025 GGTGCCGATGCCATGTCCCAGACATGGTCTTATACGGGACCTCAT-ATCGATGCCAATGCCATAT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGACCTCATCATCGATGCCAA----A-AA
* * *
9264089 CCCAGATATGGTCTTACATAGGA-TCTCATACT
61 CCCAGATATGGTATTACA-AGAAGTCTCATAAT
* * *
9264121 GATGCCAATGCCATATCCCAGATATGGTCTTACACGGGATCTCA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGACCTCA
9264165 ATACTCACAT
Statistics
Matches: 116, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
91 49 0.42
92 1 0.01
95 1 0.01
96 63 0.54
97 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (92 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGACCTCATCATCGATGCCAAAAACCCAG
ATATGGTATTACAAGAAGTCTCATAAT
Found at i:9264296 original size:6 final size:6
Alignment explanation
Indices: 9264285--9265058 Score: 1548
Period size: 6 Copynumber: 129.0 Consensus size: 6
9264275 AGAAAGTCAA
9264285 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9264333 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9264381 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9264429 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9264477 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9264525 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9264573 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9264621 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9264669 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9264717 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9264765 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9264813 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9264861 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9264909 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9264957 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9265005 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
9265053 ATACAT
1 ATACAT
9265059 TTCATGCAAT
Statistics
Matches: 768, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 768 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
ATACAT
Found at i:9266821 original size:29 final size:29
Alignment explanation
Indices: 9266779--9266835 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
9266769 AAGACGGAAG
*
9266779 ACTAACTTGTTTCAGTGTTCATAATTAAT
1 ACTAACTTGCTTCAGTGTTCATAATTAAT
9266808 ACTAACTTGCTTCAGTGTTCATAATTAA
1 ACTAACTTGCTTCAGTGTTCATAATTAA
9266836 CTCCAATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.42
Consensus pattern (29 bp):
ACTAACTTGCTTCAGTGTTCATAATTAAT
Found at i:9267341 original size:23 final size:23
Alignment explanation
Indices: 9267322--9267370 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
9267312 ACTAAACTAT
9267322 AATTACAACTAAAAAGAAACCTA
1 AATTACAACTAAAAAGAAACCTA
* * * *
9267345 AATTTCAAGTAAAAATAAAACTA
1 AATTACAACTAAAAAGAAACCTA
9267368 AAT
1 AAT
9267371 AGGAAACATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.61, C:0.12, G:0.04, T:0.22
Consensus pattern (23 bp):
AATTACAACTAAAAAGAAACCTA
Done.