Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 32 of 167
Found at i:9613090 original size:143 final size:143
Alignment explanation
Indices: 9612685--9613111 Score: 391
Period size: 143 Copynumber: 3.0 Consensus size: 143
9612675 TAGATTGAAG
* * * * * * * * * *
9612685 ATGGTGGATCTTATCTTCCTGAAGTTAC-GTGAAGTAGATTGAAGCCACCGGCCTTATCTCCTTG
1 ATGGCGGATCTTATCTTTCTAAAGTTGCAATGGAGGAGATTAAAGCCACCAGCCTTATCTCCCTG
* * * * * * * * **
9612749 AAGTTTCAACCGAACAAACTGAAGAAAGCGAATCTTATTTCCCT-GAAGTTGTAGTGGAACAGAT
66 AAGTTGCAGCGGAGCAGACTGAAGAAAGCCAATCTTATTACTCTAG-AGTTCCAGTGGAACAGAT
*
9612813 TAAAGCTACAAATA
130 TGAAGCTACAAATA
* * *
9612827 ATGGCGGATCTTATCTTTCTGAAGTTGCAGTGGAGTAGATTAAAGCCACCAGCCTTATCTCCCTG
1 ATGGCGGATCTTATCTTTCTAAAGTTGCAATGGAGGAGATTAAAGCCACCAGCCTTATCTCCCTG
* * *
9612892 AAGTTGCAGCGGAGCAGACTGAAGAAAGCGAATCTTATTTCTCTAGAGTTGCAGTGGAACAGATT
66 AAGTTGCAGCGGAGCAGACTGAAGAAAGCCAATCTTATTACTCTAGAGTTCCAGTGGAACAGATT
*
9612957 GAAGCTACAAATT
131 GAAGCTACAAATA
* * **
9612970 ATGGTGGATCTTATC-TTCTTAAAGTTGCAATGGAGGAGATTGAAGCTGCCAGCCTTATCTCCCT
1 ATGGCGGATCTTATCTTTC-TAAAGTTGCAATGGAGGAGATTAAAGCCACCAGCCTTATCTCCCT
* * ** * * *
9613034 GAAGTTGTAGTGGAGCAGGTTGAA-ATTA-CCAATTCTTATCTACTTTAG-GTTCCAGT-GAAGT
65 GAAGTTGCAGCGGAGCAGACTGAAGA-AAGCCAA-TCTTAT-TACTCTAGAGTTCCAGTGGAA-C
*
9613095 AGATCGAAGCTACAAAT
126 AGATTGAAGCTACAAAT
9613112 CTCTTGTAAG
Statistics
Matches: 244, Mismatches: 34, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
142 35 0.14
143 202 0.83
144 7 0.03
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (143 bp):
ATGGCGGATCTTATCTTTCTAAAGTTGCAATGGAGGAGATTAAAGCCACCAGCCTTATCTCCCTG
AAGTTGCAGCGGAGCAGACTGAAGAAAGCCAATCTTATTACTCTAGAGTTCCAGTGGAACAGATT
GAAGCTACAAATA
Found at i:9613308 original size:16 final size:16
Alignment explanation
Indices: 9613287--9613317 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
9613277 ACACGACCGT
9613287 GTGTCTCAACCGTGTC
1 GTGTCTCAACCGTGTC
9613303 GTGTCTCAACCGTGT
1 GTGTCTCAACCGTGT
9613318 GAGGGACACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.29, G:0.26, T:0.32
Consensus pattern (16 bp):
GTGTCTCAACCGTGTC
Found at i:9616073 original size:37 final size:37
Alignment explanation
Indices: 9616032--9616103 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 37
9616022 TAAAAAAATA
* *
9616032 ATTTTTAT-ATTTTTTATTAATTTTTAAATTTTAAACT
1 ATTTTTATAAATTTTT-TGAATTTTTAAATTTTAAACT
9616069 ATTTTTATAAATTTTTTGAATTTTTAAATTTTAAA
1 ATTTTTATAAATTTTTTGAATTTTTAAATTTTAAA
9616104 AAATTAATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 26 0.81
38 6 0.19
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (37 bp):
ATTTTTATAAATTTTTTGAATTTTTAAATTTTAAACT
Found at i:9620400 original size:28 final size:29
Alignment explanation
Indices: 9620342--9620398 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
9620332 TTTATTAATG
* *
9620342 TTAATTTTAAAAAAAATGCTTGAATGAAA
1 TTAATTTAAAAAAAAACGCTTGAATGAAA
9620371 TTAATTTAAAAAAAAACGCTTGAATGAA
1 TTAATTTAAAAAAAAACGCTTGAATGAA
9620399 TTGAAAGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.53, C:0.05, G:0.11, T:0.32
Consensus pattern (29 bp):
TTAATTTAAAAAAAAACGCTTGAATGAAA
Found at i:9621038 original size:3 final size:3
Alignment explanation
Indices: 9621025--9621063 Score: 60
Period size: 3 Copynumber: 12.7 Consensus size: 3
9621015 ATAAATACAC
*
9621025 AAT AGAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AA
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
9621064 CGGAATAGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:9621128 original size:59 final size:60
Alignment explanation
Indices: 9621064--9621179 Score: 207
Period size: 59 Copynumber: 1.9 Consensus size: 60
9621054 ATAACAATAA
*
9621064 CGGAATAGATAAATGGGTGCCAAATGAAAAAGAAAATAAAACC-AAAATAAAGAACAAAT
1 CGGAATAGATAAATAGGTGCCAAATGAAAAAGAAAATAAAACCAAAAATAAAGAACAAAT
*
9621123 CGGAATAGATAAATAGGTGCCAAATGAAAAATAAAATAAAACCAAAAATAAAGAACA
1 CGGAATAGATAAATAGGTGCCAAATGAAAAAGAAAATAAAACCAAAAATAAAGAACA
9621180 GATAAAAAGG
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
59 41 0.76
60 13 0.24
ACGTcount: A:0.60, C:0.10, G:0.16, T:0.14
Consensus pattern (60 bp):
CGGAATAGATAAATAGGTGCCAAATGAAAAAGAAAATAAAACCAAAAATAAAGAACAAAT
Found at i:9623164 original size:44 final size:44
Alignment explanation
Indices: 9623055--9623234 Score: 200
Period size: 44 Copynumber: 4.1 Consensus size: 44
9623045 GATTTATGAC
* * * * *
9623055 TTGTAGCTTTAATCTGTTCTACTGCAAGTTCAGGGA-AGTGAGAT
1 TTGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGA-TGAGAT
* * *
9623099 TCGCTATCTTCAATCTGCTCCACTGCAATTTCAAGGAGATGAGAT
1 TTG-TAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATGAGAT
* * * *
9623144 TTGTAACTTCAACCTGCTCCACTGTAATTTCAGGGAGATAAGGT
1 TTGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATGAGAT
** *
9623188 TTGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATGAGAT
1 TTGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATGAGAT
9623232 TTG
1 TTG
9623235 CCACGATGAC
Statistics
Matches: 113, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
44 77 0.68
45 35 0.31
46 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (44 bp):
TTGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATGAGAT
Found at i:9627585 original size:46 final size:48
Alignment explanation
Indices: 9627512--9627614 Score: 138
Period size: 46 Copynumber: 2.2 Consensus size: 48
9627502 GACATGACAG
* * * *
9627512 GACAGAAATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
* *
9627558 GATAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
9627606 GACAGGAAT
1 GACAGGAAT
9627615 AATTCATGTA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
46 26 0.54
47 1 0.02
48 21 0.44
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
Found at i:9635010 original size:48 final size:46
Alignment explanation
Indices: 9634910--9635012 Score: 143
Period size: 48 Copynumber: 2.2 Consensus size: 46
9634900 GACAGGACAG
* * *
9634910 GACAGAAATGAGCCATGTAAGTCCATATCAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAGATATATGGCATTGGA
* *
9634956 GACAGGAATGAGCCATGTAAGCCCATTATATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCA-TAT-CAGATATATGGCATTGGA
9635004 GACAGGAAT
1 GACAGGAAT
9635013 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 23 0.46
47 3 0.06
48 24 0.48
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (46 bp):
GACAGGAATGAGCCATGTAAGCCCATATCAGATATATGGCATTGGA
Found at i:9638715 original size:19 final size:20
Alignment explanation
Indices: 9638693--9638731 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
9638683 TTATGAAACT
*
9638693 TAATACATATG-ATGAAATG
1 TAATACAGATGAATGAAATG
*
9638712 TAATGCAGATGAATGAAATG
1 TAATACAGATGAATGAAATG
9638732 AATGCAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.46, C:0.05, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATACAGATGAATGAAATG
Found at i:9642470 original size:3 final size:3
Alignment explanation
Indices: 9642457--9642495 Score: 60
Period size: 3 Copynumber: 12.7 Consensus size: 3
9642447 ATAAATACAC
*
9642457 AAT AGAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AA
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
9642496 CGGAATAGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:9642587 original size:22 final size:23
Alignment explanation
Indices: 9642540--9642587 Score: 55
Period size: 22 Copynumber: 2.1 Consensus size: 23
9642530 AATAAAACCA
*
9642540 AAATAAAGAACAAATAAAAAGGT
1 AAATAAAGAACAAATAAAAAGAT
*
9642563 AAATAAAGTA-AAATAAATAA-AT
1 AAATAAAGAACAAATAAA-AAGAT
9642585 AAA
1 AAA
9642588 CAATAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.73, C:0.02, G:0.08, T:0.17
Consensus pattern (23 bp):
AAATAAAGAACAAATAAAAAGAT
Found at i:9644985 original size:40 final size:40
Alignment explanation
Indices: 9644941--9645030 Score: 117
Period size: 40 Copynumber: 2.2 Consensus size: 40
9644931 ATCAAAATGG
* * * *
9644941 ATAGGATTTGTTATTGATTCACTATGGTAATTTAAAGTGA
1 ATAGGATTTGTTACTGATTCACTACGGTAACTTAAAGCGA
* * *
9644981 ATAGGATTTATTCCTGATTCACTACGGTAACTTAAGGCGA
1 ATAGGATTTGTTACTGATTCACTACGGTAACTTAAAGCGA
9645021 ATAGGATTTG
1 ATAGGATTTG
9645031 ACCTAAAAAG
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (40 bp):
ATAGGATTTGTTACTGATTCACTACGGTAACTTAAAGCGA
Found at i:9648160 original size:34 final size:35
Alignment explanation
Indices: 9648115--9648201 Score: 97
Period size: 38 Copynumber: 2.4 Consensus size: 35
9648105 AAATTAACTA
* *
9648115 TTAATTTATTAAATT-A-AAGTTTAGGGTATTAGGG
1 TTAATTAATTAAATTGATAAATTTAGGGT-TTAGGG
9648149 TTAATTAATTAAATTAGGGATAAATTTAGGGTTTAGGG
1 TTAATTAATTAAATT---GATAAATTTAGGGTTTAGGG
*
9648187 TTAATTGATTAAATT
1 TTAATTAATTAAATT
9648202 TAGGGTTAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
34 14 0.31
38 21 0.47
39 10 0.22
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.44
Consensus pattern (35 bp):
TTAATTAATTAAATTGATAAATTTAGGGTTTAGGG
Found at i:9648166 original size:19 final size:19
Alignment explanation
Indices: 9648142--9648212 Score: 56
Period size: 19 Copynumber: 3.7 Consensus size: 19
9648132 AGTTTAGGGT
9648142 ATTAGGGTTAATTAATTAA
1 ATTAGGGTTAATTAATTAA
* * *
9648161 ATTAGGGATAA--ATTTAGGG
1 ATTAGGGTTAATTAATTA--A
* *
9648180 TTTAGGGTTAATTGATTAA
1 ATTAGGGTTAATTAATTAA
9648199 ATTTAGGGTTAATT
1 A-TTAGGGTTAATT
9648213 GATACATAAT
Statistics
Matches: 38, Mismatches: 9, Indels: 9
0.68 0.16 0.16
Matches are distributed among these distances:
17 4 0.11
19 19 0.50
20 12 0.32
21 3 0.08
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (19 bp):
ATTAGGGTTAATTAATTAA
Found at i:9648177 original size:39 final size:40
Alignment explanation
Indices: 9648129--9648206 Score: 124
Period size: 38 Copynumber: 2.0 Consensus size: 40
9648119 TTTATTAAAT
9648129 TAAAGTTTAGGGTATTAGGGTTAATTAATTAAA-TTAGGGA
1 TAAAGTTTAGGGT-TTAGGGTTAATTAATTAAATTTAGGGA
*
9648169 TAAA-TTTAGGGTTTAGGGTTAATTGATTAAATTTAGGG
1 TAAAGTTTAGGGTTTAGGGTTAATTAATTAAATTTAGGG
9648207 TTAATTGATA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
38 18 0.50
39 14 0.39
40 4 0.11
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.40
Consensus pattern (40 bp):
TAAAGTTTAGGGTTTAGGGTTAATTAATTAAATTTAGGGA
Found at i:9648603 original size:7 final size:7
Alignment explanation
Indices: 9648593--9648618 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
9648583 CTATTAATTT
9648593 TAAATAC
1 TAAATAC
9648600 TAAATAC
1 TAAATAC
9648607 TAAATAC
1 TAAATAC
9648614 TAAAT
1 TAAAT
9648619 TAGAGTTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.31
Consensus pattern (7 bp):
TAAATAC
Found at i:9648977 original size:126 final size:126
Alignment explanation
Indices: 9648750--9649259 Score: 655
Period size: 126 Copynumber: 4.0 Consensus size: 126
9648740 TTTCTGCAAG
* * * * *
9648750 AATAATTATGAGTAGACGTTTCTAAACAAATAGTGTCGAAAAATGCTTCAAGTAGGATGCACTGT
1 AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGTC-AAAAACGCTTCAAGCAGGATGCACTGT
* * * *
9648815 CAGCAAAATTTTTGGAAAAAGCTCCCACATGAACGCTTTTTTGCTACAGTAGTTCGTAGAAA
65 CAGCAAAATTTCTAGAAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* * * * *
9648877 AATAATTCTGAA-TAGACGTTTCTGAACATATAATGTCAAAAACGTTTCAAGCATGATGCACTAT
1 AATAATTCT-AAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGT
* * * *
9648941 CAGTAAAATTTCTAGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAATAGTTTGTAGAAA
65 CAGCAAAATTTCTAGAAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* *
9649003 AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGTCAAAAATGCTTCAAGCATGATGCACTGTC
1 AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTC
** * * * * *
9649068 AATAAAATTTC-AGAAAAAAGCTCCCATGTGGATGCTCTTTTGCTATAGTAGTTCATAGAAA
66 AGCAAAATTTCTAG-AAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* * * *
9649129 AATAACTCTAAGTAGACGTTTCTGAACAAATAGTGTCGAAAACACTTCAAGTAGGATGCACTGTC
1 AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTC
* * *
9649194 AGCAAAATTTCAAAAAAAAAAGCTCCCACGTGAATGCTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGCAAAATTTC--TAGAAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGTTCGTAGAAA
9649257 AAT
1 AAT
9649260 GAGGCTATAA
Statistics
Matches: 334, Mismatches: 43, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
125 4 0.01
126 252 0.75
127 30 0.09
128 47 0.14
129 1 0.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (126 bp):
AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTC
AGCAAAATTTCTAGAAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGTTCGTAGAAA
Found at i:9652461 original size:29 final size:29
Alignment explanation
Indices: 9652429--9652519 Score: 130
Period size: 29 Copynumber: 3.2 Consensus size: 29
9652419 GGGCCTACCT
9652429 GGCCATATAAATGTGATTTGGGCCTAATG
1 GGCCATATAAATGTGATTTGGGCCTAATG
* *
9652458 GGCCATATACAGGTGATTTGGGCCTAATG
1 GGCCATATAAATGTGATTTGGGCCTAATG
* * *
9652487 GGCCATATGAATATGA-TTGGGCTTAATG
1 GGCCATATAAATGTGATTTGGGCCTAATG
9652515 GGCCA
1 GGCCA
9652520 GATACAGGTA
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 16 0.29
29 39 0.71
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (29 bp):
GGCCATATAAATGTGATTTGGGCCTAATG
Found at i:9657018 original size:48 final size:47
Alignment explanation
Indices: 9656950--9657084 Score: 173
Period size: 48 Copynumber: 2.8 Consensus size: 47
9656940 ATGCAAACAT
*
9656950 CATAAATGAAAAAAAAATCAAACAGTATTGAAATTGTAATTATAA-TTG
1 CATAAATGAAAAAAATATCAAACAGTATTGAAATT-TAATTA-AATTTG
* *
9656998 CATAAATGAATAAAATATCAAACAATATTGCAAATTTAATTAAATTTG
1 CATAAATGAAAAAAATATCAAACAGTATTG-AAATTTAATTAAATTTG
* * *
9657046 CATAAATTAAAAAAATATCGAATAGTATTGAAAATTTAA
1 CATAAATGAAAAAAATATCAAACAGTATTG-AAATTTAA
9657085 AACTATCACT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
47 2 0.03
48 69 0.91
49 5 0.07
ACGTcount: A:0.54, C:0.07, G:0.08, T:0.31
Consensus pattern (47 bp):
CATAAATGAAAAAAATATCAAACAGTATTGAAATTTAATTAAATTTG
Found at i:9657266 original size:22 final size:22
Alignment explanation
Indices: 9657222--9657267 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
9657212 AACAAACAAA
* *
9657222 TTTGATAGAATTTTGATAGAAT
1 TTTGATAGAATTTTGAAAAAAT
9657244 TTTGATAGAATTTTGAAAAAAT
1 TTTGATAGAATTTTGAAAAAAT
9657266 TT
1 TT
9657268 CAATGAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.46
Consensus pattern (22 bp):
TTTGATAGAATTTTGAAAAAAT
Found at i:9657267 original size:11 final size:11
Alignment explanation
Indices: 9657222--9657259 Score: 76
Period size: 11 Copynumber: 3.5 Consensus size: 11
9657212 AACAAACAAA
9657222 TTTGATAGAAT
1 TTTGATAGAAT
9657233 TTTGATAGAAT
1 TTTGATAGAAT
9657244 TTTGATAGAAT
1 TTTGATAGAAT
9657255 TTTGA
1 TTTGA
9657260 AAAAATTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.18, T:0.47
Consensus pattern (11 bp):
TTTGATAGAAT
Found at i:9661211 original size:29 final size:30
Alignment explanation
Indices: 9661179--9661236 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
9661169 ATTATGAAAA
9661179 ATATATTTTTATAAAAA-TATAAAAATATT
1 ATATATTTTTATAAAAATTATAAAAATATT
* *
9661208 ATATATTTTTTTAAAAATTATATAAATAT
1 ATATATTTTTATAAAAATTATAAAAATAT
9661237 ATTTAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (30 bp):
ATATATTTTTATAAAAATTATAAAAATATT
Found at i:9661218 original size:30 final size:29
Alignment explanation
Indices: 9661179--9661236 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
9661169 ATTATGAAAA
9661179 ATATATTTTTATAAAAA-TATAAAAATATT
1 ATATATTTTT-TAAAAATTATAAAAATATT
*
9661208 ATATATTTTTTTAAAAATTATATAAATAT
1 ATATA-TTTTTTAAAAATTATAAAAATAT
9661237 ATTTAAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 11 0.42
30 15 0.58
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
ATATATTTTTTAAAAATTATAAAAATATT
Found at i:9661222 original size:21 final size:22
Alignment explanation
Indices: 9661198--9661249 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 22
9661188 TATAAAAATA
* * *
9661198 TAAAAATAT-TATATATTTTTT
1 TAAAAATATATATAAATATATT
9661219 TAAAAAT-TATATAAATATATT
1 TAAAAATATATATAAATATATT
9661240 TAAAAATATA
1 TAAAAATATA
9661250 AAATGTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 1 0.04
21 23 0.88
22 2 0.08
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
TAAAAATATATATAAATATATT
Found at i:9661250 original size:18 final size:18
Alignment explanation
Indices: 9661217--9661264 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 18
9661207 TATATATTTT
*
9661217 TTTAAAAATTATATAAATATA
1 TTTAAAAA-TATA-AAAT-GA
*
9661238 TTTAAAAATATAAAATGT
1 TTTAAAAATATAAAATGA
9661256 TTTAAAAAT
1 TTTAAAAAT
9661265 TTGAACAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 9 0.36
19 4 0.16
20 4 0.16
21 8 0.32
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (18 bp):
TTTAAAAATATAAAATGA
Found at i:9662331 original size:21 final size:20
Alignment explanation
Indices: 9662284--9662327 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
9662274 AAAATCCACG
9662284 AGTTAACCAAAAACTAATTA
1 AGTTAACCAAAAACTAATTA
*
9662304 AGTTAACCAAAAACTGATTA
1 AGTTAACCAAAAACTAATTA
9662324 AGTT
1 AGTT
9662328 TAACATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.50, C:0.14, G:0.09, T:0.27
Consensus pattern (20 bp):
AGTTAACCAAAAACTAATTA
Found at i:9663098 original size:87 final size:87
Alignment explanation
Indices: 9662960--9663147 Score: 232
Period size: 87 Copynumber: 2.2 Consensus size: 87
9662950 GTAGATTAAG
* * * * * *
9662960 CACCAGTATTTGCAGATGAACTGCCAGTAGATTGTGGATGCACAACATATTTGCAAATAAAAGCT
1 CACCAGTGTTTGCAAATAAACTGCCAGTAGATTATGAATACACAACATATTTGCAAATAAAAGCT
* *
9663025 GCCAATAAGTTTGTGGATAAAC
66 GCCAATAAATTCGTGGATAAAC
* * * * * *
9663047 CATCAGTGTTTGCAAATAAACTGCTAGTAGGTTATGAATACACAACGTATTTGTAGATAAAAGCT
1 CACCAGTGTTTGCAAATAAACTGCCAGTAGATTATGAATACACAACATATTTGCAAATAAAAGCT
* *
9663112 GCTAGTAAATTCGTGGATAAAC
66 GCCAATAAATTCGTGGATAAAC
9663134 CACCAGTGTTTGCA
1 CACCAGTGTTTGCA
9663148 GATCAACACT
Statistics
Matches: 84, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
87 84 1.00
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.28
Consensus pattern (87 bp):
CACCAGTGTTTGCAAATAAACTGCCAGTAGATTATGAATACACAACATATTTGCAAATAAAAGCT
GCCAATAAATTCGTGGATAAAC
Found at i:9666441 original size:53 final size:53
Alignment explanation
Indices: 9666368--9666515 Score: 188
Period size: 53 Copynumber: 2.8 Consensus size: 53
9666358 TTTGAAGAAT
* * *
9666368 CATATTGTGTAAGACCGTAATTGGTGGGTTATGACATCATATAAAAAGAAGAC
1 CATATCGTGTAAGACAGTAATTGGTGGGTTATGACATCATATAAAAAGAAAAC
* * * * *
9666421 CATATCGTGTAAAACAGTAATTGGTGGGTTATGGCATCAAATAGAAAGAAAAT
1 CATATCGTGTAAGACAGTAATTGGTGGGTTATGACATCATATAAAAAGAAAAC
* ** *
9666474 CATATCATGTAAGATTGTAACTGGTGGGTTATGACATCATAT
1 CATATCGTGTAAGACAGTAATTGGTGGGTTATGACATCATAT
9666516 GAGAAAAATT
Statistics
Matches: 80, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
53 80 1.00
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (53 bp):
CATATCGTGTAAGACAGTAATTGGTGGGTTATGACATCATATAAAAAGAAAAC
Found at i:9666730 original size:61 final size:61
Alignment explanation
Indices: 9666635--9666800 Score: 242
Period size: 61 Copynumber: 2.7 Consensus size: 61
9666625 ACCAGGAAAT
* *
9666635 GAAAGCCTTTGTGGCGAATATTGAATGTAAAGGAACGCCTTTGTAACAAAACTCTGGACAA
1 GAAAGCCTTTGTGGCGAGTATTGAATGTAAAGGAATGCCTTTGTAACAAAACTCTGGACAA
* * * * *
9666696 GAAAGCCTTTGTAGAGAGTATTAAATGTAAAGGAATGCCTTTGTAGCAAAACTCTGGACAT
1 GAAAGCCTTTGTGGCGAGTATTGAATGTAAAGGAATGCCTTTGTAACAAAACTCTGGACAA
* * *
9666757 GAAAGCTTTTGTGGCGAGTACTGAATGTAAATGAATGCCTTTGT
1 GAAAGCCTTTGTGGCGAGTATTGAATGTAAAGGAATGCCTTTGT
9666801 GGCGCAATTT
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
61 92 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (61 bp):
GAAAGCCTTTGTGGCGAGTATTGAATGTAAAGGAATGCCTTTGTAACAAAACTCTGGACAA
Found at i:9675587 original size:17 final size:17
Alignment explanation
Indices: 9675557--9675617 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
9675547 AAATCTCTCT
9675557 ATAATAATAATAAAATTA
1 ATAATAA-AATAAAATTA
9675575 ATAATAAAATAAAA-TA
1 ATAATAAAATAAAATTA
* * *
9675591 GTGAAAAAAATAAAATAA
1 AT-AATAAAATAAAATTA
*
9675609 AAAATAAAA
1 ATAATAAAA
9675618 AAACAACATT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
16 3 0.09
17 24 0.69
18 8 0.23
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (17 bp):
ATAATAAAATAAAATTA
Found at i:9675619 original size:22 final size:22
Alignment explanation
Indices: 9675557--9675620 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 22
9675547 AAATCTCTCT
9675557 ATAATAATAATAAAATTAATAATAAA
1 ATAA-AATAATAAAA--AA-AATAAA
* *
9675583 ATAAAATAGTGAAAAAAATAAA
1 ATAAAATAATAAAAAAAATAAA
9675605 ATAAAA-AATAAAAAAA
1 ATAAAATAATAAAAAAA
9675621 CAACATTTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
21 8 0.24
22 12 0.35
23 2 0.06
25 8 0.24
26 4 0.12
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (22 bp):
ATAAAATAATAAAAAAAATAAA
Found at i:9676440 original size:13 final size:13
Alignment explanation
Indices: 9676422--9676448 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
9676412 CCAGATTGAC
9676422 CGGCCGGCAGTTT
1 CGGCCGGCAGTTT
9676435 CGGCCGGCAGTTT
1 CGGCCGGCAGTTT
9676448 C
1 C
9676449 AGGGGCGGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.33, G:0.37, T:0.22
Consensus pattern (13 bp):
CGGCCGGCAGTTT
Found at i:9681285 original size:45 final size:45
Alignment explanation
Indices: 9681144--9681293 Score: 137
Period size: 45 Copynumber: 3.4 Consensus size: 45
9681134 CCTTTGCACC
* * * *
9681144 ACGATGTGGATGAACCACTAAGCGTTGTAGATAAAA--TGCTAGT
1 ACGATGTGGATAAACCACTAATCGATGCAGATAAAAGTTGCTAGT
** * * *
9681187 ACGATGTAAATAAATCACTAATC-AGTGCATATAAAAGTGGCTAGT
1 ACGATGTGGATAAACCACTAATCGA-TGCAGATAAAAGTTGCTAGT
* * *
9681232 TC-AGTGTGGATAAACCACTATTCGATGCAGATAAAAGTTGCTAAT
1 ACGA-TGTGGATAAACCACTAATCGATGCAGATAAAAGTTGCTAGT
*
9681277 ACGATGTGGATTAACCA
1 ACGATGTGGATAAACCA
9681294 TTAAACGCTG
Statistics
Matches: 82, Mismatches: 19, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
43 27 0.33
44 1 0.01
45 52 0.63
46 2 0.02
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (45 bp):
ACGATGTGGATAAACCACTAATCGATGCAGATAAAAGTTGCTAGT
Found at i:9682925 original size:63 final size:63
Alignment explanation
Indices: 9682854--9683059 Score: 263
Period size: 63 Copynumber: 3.3 Consensus size: 63
9682844 ACAAACGGGT
*
9682854 ATGTGTCCAGGTCGTGTAACTCACTGACTTCAGATTTGAGTCACACGGGCAAGACACACGAGC
1 ATGTGTCCAGGCCGTGTAACTCACTGACTTCAGATTTGAGTCACACGGGCAAGACACACGAGC
* * * * * * * *
9682917 ATGTGTCCAGGCCGTGTAACTCTCTGACTTTAGATTGGAGTCATATGGGTAAGACACAAGGGC
1 ATGTGTCCAGGCCGTGTAACTCACTGACTTCAGATTTGAGTCACACGGGCAAGACACACGAGC
* * *
9682980 ATGTGTCCAGGCCGTGTAACTCATTGACTTCAGATTTGAGACACACGGGCAAGGCACAC-AGGC
1 ATGTGTCCAGGCCGTGTAACTCACTGACTTCAGATTTGAGTCACACGGGCAAGACACACGA-GC
* *
9683043 GTGTG-CCAGGCTGTGTA
1 ATGTGTCCAGGCCGTGTA
9683060 GAGCCACATA
Statistics
Matches: 120, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
62 11 0.09
63 109 0.91
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (63 bp):
ATGTGTCCAGGCCGTGTAACTCACTGACTTCAGATTTGAGTCACACGGGCAAGACACACGAGC
Found at i:9687958 original size:15 final size:15
Alignment explanation
Indices: 9687940--9687969 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
9687930 TTTATTCTTT
9687940 CTTTTATTATTATTA
1 CTTTTATTATTATTA
9687955 CTTTTATTATTATTA
1 CTTTTATTATTATTA
9687970 ATATTATAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
CTTTTATTATTATTA
Found at i:9687976 original size:15 final size:15
Alignment explanation
Indices: 9687943--9687976 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
9687933 ATTCTTTCTT
* *
9687943 TTATTATTATTACTT
1 TTATTATTATTAATA
9687958 TTATTATTATTAATA
1 TTATTATTATTAATA
9687973 TTAT
1 TTAT
9687977 AACATATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (15 bp):
TTATTATTATTAATA
Found at i:9688680 original size:50 final size:50
Alignment explanation
Indices: 9688600--9688704 Score: 142
Period size: 50 Copynumber: 2.1 Consensus size: 50
9688590 TCTAATTTGA
* * *
9688600 CATATCAAATTACGAAAGATCAATTAACCTGCAAATACT-GATGGTTCAAC
1 CATAACAAATTACGAAAGATCAATTAACCTGCAAACACTAG-TCGTTCAAC
*
9688650 CATAACAAATTAC-AACATATCAATTAACCTGCAAACACTAGTCGTTCAAC
1 CATAACAAATTACGAA-AGATCAATTAACCTGCAAACACTAGTCGTTCAAC
9688700 CATAA
1 CATAA
9688705 TTTTACTAGC
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
49 2 0.04
50 46 0.94
51 1 0.02
ACGTcount: A:0.44, C:0.23, G:0.09, T:0.25
Consensus pattern (50 bp):
CATAACAAATTACGAAAGATCAATTAACCTGCAAACACTAGTCGTTCAAC
Found at i:9691993 original size:10 final size:9
Alignment explanation
Indices: 9691975--9692012 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
9691965 ATCTTAATTA
9691975 TTTTTATAT
1 TTTTTATAT
9691984 TTTTTAATAT
1 TTTTT-ATAT
*
9691994 TTTTTATAA
1 TTTTTATAT
9692003 TTTTTA-AT
1 TTTTTATAT
9692011 TT
1 TT
9692013 ATTTGTCAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
8 3 0.12
9 14 0.54
10 9 0.35
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (9 bp):
TTTTTATAT
Found at i:9694848 original size:20 final size:21
Alignment explanation
Indices: 9694820--9694872 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
9694810 ATTACACAAT
*
9694820 AAATTAAAATAATTT-TCAAA
1 AAATTAAAATAATTTATAAAA
*
9694840 AATTTAAAAT-ATTTATAAAA
1 AAATTAAAATAATTTATAAAA
9694860 AAATTATAAATAA
1 AAATTA-AAATAA
9694873 AAAATTAGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 4 0.15
20 18 0.67
21 4 0.15
22 1 0.04
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
AAATTAAAATAATTTATAAAA
Found at i:9695784 original size:14 final size:16
Alignment explanation
Indices: 9695765--9695797 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
9695755 TCAGTTAATA
9695765 TTATATAA-GTTT-TT
1 TTATATAATGTTTCTT
9695779 TTATATAATGTTTCTT
1 TTATATAATGTTTCTT
9695795 TTA
1 TTA
9695798 GCTCTTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 4 0.24
16 5 0.29
ACGTcount: A:0.27, C:0.03, G:0.06, T:0.64
Consensus pattern (16 bp):
TTATATAATGTTTCTT
Found at i:9696942 original size:19 final size:20
Alignment explanation
Indices: 9696918--9696978 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 20
9696908 TCCTAAGTGA
9696918 AATTAAAATA-ATAAATTTT
1 AATTAAAATATATAAATTTT
* *
9696937 AATTAAAATATTATTAATTAT
1 AATTAAAATA-TATAAATTTT
*
9696958 ATTTAAAATATATAAATTTT
1 AATTAAAATATATAAATTTT
9696978 A
1 A
9696979 TATTTTATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
19 10 0.29
20 9 0.26
21 16 0.46
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AATTAAAATATATAAATTTT
Found at i:9698830 original size:31 final size:31
Alignment explanation
Indices: 9698768--9698835 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
9698758 GTTAAATACC
9698768 CAATAACTTAAATAAAAACTTTCTAACAGTT
1 CAATAACTTAAATAAAAACTTTCTAACAGTT
* * *
9698799 CAATGACTTAAATGAAAACTTTC-ATATAGTT
1 CAATAACTTAAATAAAAACTTTCTA-ACAGTT
9698830 CAATAA
1 CAATAA
9698836 TCACTTTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 1 0.03
31 31 0.97
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.32
Consensus pattern (31 bp):
CAATAACTTAAATAAAAACTTTCTAACAGTT
Found at i:9702145 original size:130 final size:130
Alignment explanation
Indices: 9701912--9702174 Score: 508
Period size: 130 Copynumber: 2.0 Consensus size: 130
9701902 TATATTTGAT
9701912 CAAATAACATCTAAGAAAAGATACCAATAAAAATTGGAGAGTGTTTGTGTTAATATGTTAGAATT
1 CAAATAACATCTAAGAAAAGATACCAATAAAAATTGGAGAGTGTTTGTGTTAATATGTTAGAATT
9701977 GTTTATAAAAAATGAGGTATTAAAGAAATTGTTTTTCAAAAAGGGTATATTGGATTTTATTCGAA
66 GTTTATAAAAAATGAGGTATTAAAGAAATTGTTTTTCAAAAAGGGTATATTGGATTTTATTCGAA
*
9702042 CAAATAACATCTAAGAAAAGATACCAATAAAAATTGGAGAGTGTTTGTGTTAGTATGTTAGAATT
1 CAAATAACATCTAAGAAAAGATACCAATAAAAATTGGAGAGTGTTTGTGTTAATATGTTAGAATT
*
9702107 GTTTATAAAAAATGGGGTATTAAAGAAATTGTTTTTCAAAAAGGGTATATTGGATTTTATTCGAA
66 GTTTATAAAAAATGAGGTATTAAAGAAATTGTTTTTCAAAAAGGGTATATTGGATTTTATTCGAA
9702172 CAA
1 CAA
9702175 CAATGGCACC
Statistics
Matches: 131, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
130 131 1.00
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.34
Consensus pattern (130 bp):
CAAATAACATCTAAGAAAAGATACCAATAAAAATTGGAGAGTGTTTGTGTTAATATGTTAGAATT
GTTTATAAAAAATGAGGTATTAAAGAAATTGTTTTTCAAAAAGGGTATATTGGATTTTATTCGAA
Found at i:9705293 original size:40 final size:40
Alignment explanation
Indices: 9705238--9705313 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
9705228 TGCAGTACCT
* ** *
9705238 TATGGTGTGTAGGGATGGATGGGTCGATTTTATCCCCATA
1 TATGGTGTGCAGGGATGGATAAGTCAATTTTATCCCCATA
*
9705278 TATGGTGTGCAGGGATGGGTAAGTCAATTTTATCCC
1 TATGGTGTGCAGGGATGGATAAGTCAATTTTATCCC
9705314 TACGTGGTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.32, T:0.34
Consensus pattern (40 bp):
TATGGTGTGCAGGGATGGATAAGTCAATTTTATCCCCATA
Found at i:9720305 original size:13 final size:13
Alignment explanation
Indices: 9720289--9720321 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
9720279 TTTAATTAAA
*
9720289 TTAGTTAATTAGT
1 TTAGATAATTAGT
9720302 TTAGATAATTAGT
1 TTAGATAATTAGT
9720315 TTA-ATAA
1 TTAGATAA
9720322 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:9723318 original size:30 final size:30
Alignment explanation
Indices: 9723282--9723341 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
9723272 TTCCCGAGCC
*
9723282 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
*
9723312 TAGGGGCAAAAATGTAATTTTGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
9723342 CGTATTAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:9730785 original size:263 final size:263
Alignment explanation
Indices: 9730318--9730845 Score: 1056
Period size: 263 Copynumber: 2.0 Consensus size: 263
9730308 CTCGTGTTTG
9730318 ACTCCGGCGACGGTCTCAGGTACAGGGCGTTACAGTGAGCACACAAATCGAGAACATGTGGTAAA
1 ACTCCGGCGACGGTCTCAGGTACAGGGCGTTACAGTGAGCACACAAATCGAGAACATGTGGTAAA
9730383 CCGAAACTAGGCCACAAAAAGCCTGATACCTCTCCTAATCAACTTCAGGTTGGCGATAAAGTCTT
66 CCGAAACTAGGCCACAAAAAGCCTGATACCTCTCCTAATCAACTTCAGGTTGGCGATAAAGTCTT
9730448 ACTGGATGCCGCAGATCCCCACATTGTCACTACTACACCATATGAGGAAATCCCTCTTACGGTAC
131 ACTGGATGCCGCAGATCCCCACATTGTCACTACTACACCATATGAGGAAATCCCTCTTACGGTAC
9730513 TCAGTATTTTCCCATTCGGTACGGTTGAGGTGAGTCATCCCAAGTTCGGCACTTTTAAGGTAAAC
196 TCAGTATTTTCCCATTCGGTACGGTTGAGGTGAGTCATCCCAAGTTCGGCACTTTTAAGGTAAAC
9730578 AAC
261 AAC
9730581 ACTCCGGCGACGGTCTCAGGTACAGGGCGTTACAGTGAGCACACAAATCGAGAACATGTGGTAAA
1 ACTCCGGCGACGGTCTCAGGTACAGGGCGTTACAGTGAGCACACAAATCGAGAACATGTGGTAAA
9730646 CCGAAACTAGGCCACAAAAAGCCTGATACCTCTCCTAATCAACTTCAGGTTGGCGATAAAGTCTT
66 CCGAAACTAGGCCACAAAAAGCCTGATACCTCTCCTAATCAACTTCAGGTTGGCGATAAAGTCTT
9730711 ACTGGATGCCGCAGATCCCCACATTGTCACTACTACACCATATGAGGAAATCCCTCTTACGGTAC
131 ACTGGATGCCGCAGATCCCCACATTGTCACTACTACACCATATGAGGAAATCCCTCTTACGGTAC
9730776 TCAGTATTTTCCCATTCGGTACGGTTGAGGTGAGTCATCCCAAGTTCGGCACTTTTAAGGTAAAC
196 TCAGTATTTTCCCATTCGGTACGGTTGAGGTGAGTCATCCCAAGTTCGGCACTTTTAAGGTAAAC
9730841 AAC
261 AAC
9730844 AC
1 AC
9730846 CCGATTAAAA
Statistics
Matches: 265, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
263 265 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.23
Consensus pattern (263 bp):
ACTCCGGCGACGGTCTCAGGTACAGGGCGTTACAGTGAGCACACAAATCGAGAACATGTGGTAAA
CCGAAACTAGGCCACAAAAAGCCTGATACCTCTCCTAATCAACTTCAGGTTGGCGATAAAGTCTT
ACTGGATGCCGCAGATCCCCACATTGTCACTACTACACCATATGAGGAAATCCCTCTTACGGTAC
TCAGTATTTTCCCATTCGGTACGGTTGAGGTGAGTCATCCCAAGTTCGGCACTTTTAAGGTAAAC
AAC
Found at i:9733281 original size:5 final size:5
Alignment explanation
Indices: 9733271--9733374 Score: 58
Period size: 5 Copynumber: 20.4 Consensus size: 5
9733261 TTGAATCCTC
*
9733271 TTATT TTA-T TTA-T TTA-G TTATT CTTATTT TTATT TTATT TTA-T TTATT
1 TTATT TTATT TTATT TTATT TTATT -TTA-TT TTATT TTATT TTATT TTATT
* * *
9733319 TTATTT TTATT CTTCTT TTGATTT TTCTT TTCATT TCAATT TTA-- TTATT
1 TTA-TT TTATT -TTATT TT-A-TT TTATT TT-ATT T-TATT TTATT TTATT
9733368 TTATT TT
1 TTATT TT
9733375 GAAAGACATA
Statistics
Matches: 79, Mismatches: 8, Indels: 24
0.71 0.07 0.22
Matches are distributed among these distances:
3 3 0.04
4 15 0.19
5 33 0.42
6 22 0.28
7 6 0.08
ACGTcount: A:0.18, C:0.06, G:0.02, T:0.74
Consensus pattern (5 bp):
TTATT
Found at i:9733285 original size:9 final size:9
Alignment explanation
Indices: 9733271--9733324 Score: 60
Period size: 9 Copynumber: 6.2 Consensus size: 9
9733261 TTGAATCCTC
9733271 TTATTTTAT
1 TTATTTTAT
*
9733280 TTA-TTTAG
1 TTATTTTAT
9733288 TTATTCTTAT
1 TTATT-TTAT
*
9733298 TT-TTAT-T
1 TTATTTTAT
9733305 TTATTTTAT
1 TTATTTTAT
9733314 TTATTTTAT
1 TTATTTTAT
9733323 TT
1 TT
9733325 TTATTCTTCT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
7 3 0.08
8 11 0.30
9 18 0.49
10 5 0.14
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (9 bp):
TTATTTTAT
Found at i:9733299 original size:14 final size:11
Alignment explanation
Indices: 9733274--9733374 Score: 57
Period size: 12 Copynumber: 8.8 Consensus size: 11
9733264 AATCCTCTTA
9733274 TTTTA-TTTAT
1 TTTTATTTTAT
9733284 TTAGTTATTCTTAT
1 TT--TTATT-TTAT
9733298 TTTTATTTTA-
1 TTTTATTTTAT
9733308 TTTTA-TTTA-
1 TTTTATTTTAT
9733317 TTTTATTTTTAT
1 TTTTA-TTTTAT
* *
9733329 TCTTCTTTTGAT
1 TTTTATTTT-AT
*
9733341 TTTTCTTTTCAT
1 TTTTATTTT-AT
**
9733353 TTCAATTTTATT
1 TTTTATTTTA-T
9733365 ATTTTATTTT
1 -TTTTATTTT
9733375 GAAAGACATA
Statistics
Matches: 72, Mismatches: 9, Indels: 17
0.73 0.09 0.17
Matches are distributed among these distances:
9 9 0.12
10 7 0.10
11 12 0.17
12 30 0.42
13 8 0.11
14 6 0.08
ACGTcount: A:0.18, C:0.06, G:0.02, T:0.74
Consensus pattern (11 bp):
TTTTATTTTAT
Found at i:9733322 original size:25 final size:25
Alignment explanation
Indices: 9733269--9733329 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 25
9733259 CATTGAATCC
9733269 TCTTA-TTTTA-TTTATTTAGTTAT
1 TCTTATTTTTATTTTATTTAGTTAT
*
9733292 TCTTATTTTTATTTTATTTTATTTAT
1 TCTTATTTTTATTTTA-TTTAGTTAT
9733318 T-TTATTTTTATT
1 TCTTATTTTTATT
9733330 CTTCTTTTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
23 5 0.15
24 5 0.15
25 15 0.44
26 9 0.26
ACGTcount: A:0.20, C:0.03, G:0.02, T:0.75
Consensus pattern (25 bp):
TCTTATTTTTATTTTATTTAGTTAT
Found at i:9735221 original size:21 final size:21
Alignment explanation
Indices: 9735197--9735236 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
9735187 AGAGCACCAA
* *
9735197 GAGCCAAAAGGAGCCAAAAAC
1 GAGCCAAAAAGAGACAAAAAC
*
9735218 GAGCTAAAAAGAGACAAAA
1 GAGCCAAAAAGAGACAAAA
9735237 TGGACCAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.57, C:0.17, G:0.23, T:0.03
Consensus pattern (21 bp):
GAGCCAAAAAGAGACAAAAAC
Found at i:9737230 original size:13 final size:13
Alignment explanation
Indices: 9737212--9737241 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
9737202 AGTTGGGAGA
*
9737212 AGTACTTGCCTTT
1 AGTACTTGCCTCT
9737225 AGTACTTGCCTCT
1 AGTACTTGCCTCT
9737238 AGTA
1 AGTA
9737242 TACAGATGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (13 bp):
AGTACTTGCCTCT
Found at i:9739156 original size:23 final size:23
Alignment explanation
Indices: 9739125--9739169 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
9739115 AATGTTATAC
*
9739125 CTAGAATGAATATCTGATCTGTT
1 CTAGAATGAATATATGATCTGTT
* *
9739148 CTAGTATGAATGTATGATCTGT
1 CTAGAATGAATATATGATCTGT
9739170 CTTTCTGCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (23 bp):
CTAGAATGAATATATGATCTGTT
Found at i:9739381 original size:40 final size:40
Alignment explanation
Indices: 9739316--9739393 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
9739306 TGCAGTACCT
* * * *
9739316 TATGGTGTGTAGGGATGGATGGGTCGATTTTCTCCCCATA
1 TATGATGTGCAGGGATGGATAGGTCGATTTTATCCCCATA
*
9739356 TATGATGTGCAGGGATGGGTAGGTCGATTTTATCCCCA
1 TATGATGTGCAGGGATGGATAGGTCGATTTTATCCCCA
9739394 CATGGTGTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.19, C:0.15, G:0.32, T:0.33
Consensus pattern (40 bp):
TATGATGTGCAGGGATGGATAGGTCGATTTTATCCCCATA
Found at i:9742036 original size:24 final size:24
Alignment explanation
Indices: 9742009--9742055 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
9741999 TTTAGAGAAT
9742009 TTTGTGTTTACA-TTTTGAGGGTTA
1 TTTGTGTTTA-AGTTTTGAGGGTTA
* *
9742033 TTTGTTTTTAAGTTTTTAGGGTT
1 TTTGTGTTTAAGTTTTGAGGGTT
9742056 TAGTTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.15, C:0.02, G:0.23, T:0.60
Consensus pattern (24 bp):
TTTGTGTTTAAGTTTTGAGGGTTA
Found at i:9753207 original size:16 final size:16
Alignment explanation
Indices: 9753186--9753217 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
9753176 TATGTATAGA
9753186 CATGTTCATGAAAAGT
1 CATGTTCATGAAAAGT
9753202 CATGTTCATGAAAAGT
1 CATGTTCATGAAAAGT
9753218 ATGAATGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (16 bp):
CATGTTCATGAAAAGT
Found at i:9757455 original size:13 final size:13
Alignment explanation
Indices: 9757437--9757461 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9757427 AGTAATCGTA
9757437 CACGGGCGTGTCT
1 CACGGGCGTGTCT
9757450 CACGGGCGTGTC
1 CACGGGCGTGTC
9757462 CCTGCCGAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.40, T:0.20
Consensus pattern (13 bp):
CACGGGCGTGTCT
Found at i:9767950 original size:34 final size:34
Alignment explanation
Indices: 9767907--9767972 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
9767897 TTGTTAGTAG
*
9767907 GTTTAACTTCATTTAAGTCATGCATATATATACC
1 GTTTAACTTCATATAAGTCATGCATATATATACC
9767941 GTTTAACTTCATATAAGTCATGCATATATATA
1 GTTTAACTTCATATAAGTCATGCATATATATA
9767973 TATTATAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (34 bp):
GTTTAACTTCATATAAGTCATGCATATATATACC
Found at i:9773078 original size:46 final size:45
Alignment explanation
Indices: 9773020--9773190 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 45
9773010 ACCTTTCGTA
* * *
9773020 GCCGATACATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCTCAAG
*
9773066 GCCGATGCATGTCCCAGACATGTCTTACACTAGCGCTT-GTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-G-GCTTCGTCTCAAG
** * *
9773112 GCTAATGCCATGTCCCAGACATGGTCTTACACTAGC-TC-TCATAATATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCGTC-TCA-A-G
9773160 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
9773191 AGCTCACAAT
Statistics
Matches: 106, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
45 3 0.03
46 54 0.51
47 30 0.28
48 19 0.18
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCTCAAG
Found at i:9773565 original size:30 final size:30
Alignment explanation
Indices: 9773531--9773588 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
9773521 AATTCACATA
* *
9773531 TTTGGTAAAATGACCATTTTGCCCCTAGAT
1 TTTGGCAAAATGACCATTTTACCCCTAGAT
9773561 TTTGGCAAAATGACCATTTTACCCCTAG
1 TTTGGCAAAATGACCATTTTACCCCTAG
9773589 GTTCGAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (30 bp):
TTTGGCAAAATGACCATTTTACCCCTAGAT
Found at i:9776029 original size:46 final size:45
Alignment explanation
Indices: 9775971--9776141 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 45
9775961 ACCTTTCGTA
* * *
9775971 GCCGATACATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCTCAAG
*
9776017 GCCGATGCATGTCCCAGACATGTCTTACACTAGCGCTT-GTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-G-GCTTCGTCTCAAG
** * *
9776063 GCTAATGCCATGTCCCAGACATGGTCTTACACTAGC-TC-TCATAATATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCGTC-TCA-A-G
9776111 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
9776142 AGCTCACAAT
Statistics
Matches: 106, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
45 3 0.03
46 54 0.51
47 30 0.28
48 19 0.18
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCTCAAG
Found at i:9776516 original size:30 final size:30
Alignment explanation
Indices: 9776482--9776539 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
9776472 AATTCACATA
* *
9776482 TTTGGTAAAATGACCATTTTGCCCCTAGAT
1 TTTGGCAAAATGACCATTTTACCCCTAGAT
9776512 TTTGGCAAAATGACCATTTTACCCCTAG
1 TTTGGCAAAATGACCATTTTACCCCTAG
9776540 GTTCGAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (30 bp):
TTTGGCAAAATGACCATTTTACCCCTAGAT
Found at i:9783760 original size:4 final size:4
Alignment explanation
Indices: 9783751--9783831 Score: 63
Period size: 4 Copynumber: 19.8 Consensus size: 4
9783741 CCCTTTTCTA
*** * * * **
9783751 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TCAAG TTTGC TCTC TGTA ACTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T-TTC TTT-C TTTC TTTC TTTC
*
9783801 TTTC TATC TTTC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
9783832 TTAACCTACT
Statistics
Matches: 59, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
4 56 0.95
5 3 0.05
ACGTcount: A:0.06, C:0.25, G:0.04, T:0.65
Consensus pattern (4 bp):
TTTC
Found at i:9789504 original size:18 final size:19
Alignment explanation
Indices: 9789460--9789505 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
9789450 ACTTTCTTGT
*
9789460 TAAC-ATAAAATTCTTAAA
1 TAACTATAAAATACTTAAA
9789478 TAACT-TAAAATACTT-AA
1 TAACTATAAAATACTTAAA
*
9789495 TAATTATAAAA
1 TAACTATAAAA
9789506 AATTCAGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 6 0.25
18 18 0.75
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.35
Consensus pattern (19 bp):
TAACTATAAAATACTTAAA
Found at i:9796551 original size:17 final size:17
Alignment explanation
Indices: 9796529--9796572 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
9796519 TGTAATTATC
*
9796529 ACAATTCTTATTAAAT-T
1 ACAATTATT-TTAAATAT
9796546 ACAATTATTTTAAATAT
1 ACAATTATTTTAAATAT
9796563 ACAATTATTT
1 ACAATTATTT
9796573 CAATTTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 6 0.24
17 19 0.76
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
ACAATTATTTTAAATAT
Found at i:9800960 original size:15 final size:17
Alignment explanation
Indices: 9800940--9800974 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
9800930 AAATCTCTAA
9800940 TTCTCC-TTCTTTTT-T
1 TTCTCCTTTCTTTTTCT
9800955 TTCTCCTTTCTTTTTCT
1 TTCTCCTTTCTTTTTCT
9800972 TTC
1 TTC
9800975 CTTTTCCTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.33
16 8 0.44
17 4 0.22
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (17 bp):
TTCTCCTTTCTTTTTCT
Found at i:9800980 original size:16 final size:16
Alignment explanation
Indices: 9800940--9800978 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
9800930 AAATCTCTAA
9800940 TTCTCC-TTCTTTTTT
1 TTCTCCTTTCTTTTTT
*
9800955 TTCTCCTTTCTTTTTC
1 TTCTCCTTTCTTTTTT
9800971 TT-TCCTTT
1 TTCTCCTTT
9800979 TCCTCTCCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (16 bp):
TTCTCCTTTCTTTTTT
Found at i:9801013 original size:15 final size:16
Alignment explanation
Indices: 9800987--9801016 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
9800977 TTTCCTCTCC
9800987 TATTCGTTTTCTATTA
1 TATTCGTTTTCTATTA
9801003 TATTC-TTTTCTATT
1 TATTCGTTTTCTATT
9801017 CCATTTTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.17, C:0.13, G:0.03, T:0.67
Consensus pattern (16 bp):
TATTCGTTTTCTATTA
Found at i:9804837 original size:37 final size:38
Alignment explanation
Indices: 9804790--9804867 Score: 140
Period size: 37 Copynumber: 2.1 Consensus size: 38
9804780 AATTGAGAAG
9804790 GAAGATAGCTTCATTCGACCATTGTTTTTCTTACCTTT
1 GAAGATAGCTTCATTCGACCATTGTTTTTCTTACCTTT
*
9804828 GAAG-TAGCTTCATTCGGCCATTGTTTTTCTTACCTTT
1 GAAGATAGCTTCATTCGACCATTGTTTTTCTTACCTTT
9804865 GAA
1 GAA
9804868 ACCCTAATTG
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
37 35 0.90
38 4 0.10
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.44
Consensus pattern (38 bp):
GAAGATAGCTTCATTCGACCATTGTTTTTCTTACCTTT
Found at i:9805698 original size:36 final size:36
Alignment explanation
Indices: 9805658--9805732 Score: 114
Period size: 36 Copynumber: 2.1 Consensus size: 36
9805648 CTAATGTAAT
* *
9805658 TGTTAATTTAATTGAACAAAAGTTTATGGATGTATA
1 TGTTAATTCAATTGAACAAAAGTTTATGGAAGTATA
* *
9805694 TGTTAATTCAATTGAATAGAAGTTTATGGAAGTATA
1 TGTTAATTCAATTGAACAAAAGTTTATGGAAGTATA
9805730 TGT
1 TGT
9805733 ATTTAGATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.37, C:0.03, G:0.19, T:0.41
Consensus pattern (36 bp):
TGTTAATTCAATTGAACAAAAGTTTATGGAAGTATA
Found at i:9805918 original size:71 final size:70
Alignment explanation
Indices: 9805790--9805968 Score: 216
Period size: 71 Copynumber: 2.5 Consensus size: 70
9805780 TCACGGATGA
* * * * * ** *
9805790 ACAACTATCGTTGGTCATCCGACTGGCGCTAGGG-GCAATAATTTTTCAACTTGTTTGACTAGTG
1 ACAACTATCATCGGTTATTCGACTAGCGCT-GGGCGCAATAATTTTTCAACTCATTTGACTAATG
9805854 CTAGGC
65 CTAGGC
* *
9805860 ACACACTATCATCGGTTATTCGACTAGCGCTGGGCGTAATAATTTTTCGACTCATTTGACTAATG
1 ACA-ACTATCATCGGTTATTCGACTAGCGCTGGGCGCAATAATTTTTCAACTCATTTGACTAATG
* *
9805925 TTGGGC
65 CTAGGC
*
9805931 ACAACTATCATCGGTTATTCGACTAGTGCTGGGCGCAA
1 ACAACTATCATCGGTTATTCGACTAGCGCTGGGCGCAA
9805969 AACCTTATTC
Statistics
Matches: 93, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
70 39 0.42
71 54 0.58
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (70 bp):
ACAACTATCATCGGTTATTCGACTAGCGCTGGGCGCAATAATTTTTCAACTCATTTGACTAATGC
TAGGC
Found at i:9810345 original size:35 final size:35
Alignment explanation
Indices: 9810301--9810668 Score: 434
Period size: 35 Copynumber: 10.5 Consensus size: 35
9810291 TCCTCATTGA
*
9810301 AATACCATACCTACATTTCACAACTCAGTATGGGA-
1 AATACCATACCTACATTTCACAACTCGGTAT-GGAT
* ** *
9810336 AATGCCATACCTACATTTCTTAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
*
9810371 AATACCATACCTACATTTCACGACTCGGTATGGAT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* * *
9810406 GATACCATACTTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* *
9810441 AATACCATACCTATATTTCTCAACTCGGTATGGAT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* *
9810476 GATACCATACCTACATTTCACAACTCGATATGGAT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* * * * *
9810511 GATACCATACCTACGTTTCACATCTTGGTATGGTT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* *
9810546 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* * * * * *
9810581 AATACCATACCTACGTATCATAGCTCAGTATGGAC
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
* ***
9810616 GACGTCATACCTACATTTCACAACTCGGTATGG-T
1 AATACCATACCTACATTTCACAACTCGGTATGGAT
*
9810650 TATACCATACCTACATTTC
1 AATACCATACCTACATTTC
9810669 GCACTTTGCC
Statistics
Matches: 283, Mismatches: 49, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
34 18 0.06
35 265 0.94
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCGGTATGGAT
Found at i:9815204 original size:35 final size:34
Alignment explanation
Indices: 9815158--9815520 Score: 351
Period size: 35 Copynumber: 10.6 Consensus size: 34
9815148 TTTCCTCATT
9815158 GAAATACCATACCTACATTTCACAACTCGGTATGG
1 GAAATACCATACCTACATTTCACAACTCGGTAT-G
* ** *
9815193 GAAATGCCATACCTACATTTCTTAACTCAGTATG
1 GAAATACCATACCTACATTTCACAACTCGGTATG
* * *
9815227 GATAATACCATACCTACATTTCACGACTCAGTGTG
1 GA-AATACCATACCTACATTTCACAACTCGGTATG
* * *
9815262 GATGATACCATACCTATATTTCACAACTCAGTATG
1 GA-AATACCATACCTACATTTCACAACTCGGTATG
* *
9815297 GATAATACCATACCTATATTTCTCAACTCGGTATG
1 GA-AATACCATACCTACATTTCACAACTCGGTATG
*
9815332 GATGATACCATACCTACATTTCACAACTC-GTATG
1 GA-AATACCATACCTACATTTCACAACTCGGTATG
* * * *
9815366 GATGATATCATACCTACGTTTCACATCTCGGTATG
1 GA-AATACCATACCTACATTTCACAACTCGGTATG
* *
9815401 GTTAATACCATACCTACGTTTCACAACTCGGTATG
1 G-AAATACCATACCTACATTTCACAACTCGGTATG
* * * **
9815436 G---TA--ATACCTACATATCATAGCTAAGTATG
1 GAAATACCATACCTACATTTCACAACTCGGTATG
* **
9815465 GACGACGCCATACCTACATTTCACAACTCGGTATG
1 GA-AATACCATACCTACATTTCACAACTCGGTATG
**
9815500 GTTATACCATACCTACATTTC
1 GAAATACCATACCTACATTTC
9815521 GCACTTTGCC
Statistics
Matches: 276, Mismatches: 43, Indels: 19
0.82 0.13 0.06
Matches are distributed among these distances:
29 21 0.08
31 2 0.01
34 50 0.18
35 203 0.74
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (34 bp):
GAAATACCATACCTACATTTCACAACTCGGTATG
Found at i:9815273 original size:70 final size:70
Alignment explanation
Indices: 9815160--9815520 Score: 398
Period size: 70 Copynumber: 5.3 Consensus size: 70
9815150 TCCTCATTGA
* * **
9815160 AATACCATACCTACATTTCACAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAACTCAGT
1 AATACCATACCTACATTTCACAACTCGGTAT-GGATGATACCATACCTACATTTCACAACTCAGT
9815224 ATGGAT
65 ATGGAT
* * * *
9815230 AATACCATACCTACATTTCACGACTCAGTGTGGATGATACCATACCTATATTTCACAACTCAGTA
1 AATACCATACCTACATTTCACAACTCGGTATGGATGATACCATACCTACATTTCACAACTCAGTA
9815295 TGGAT
66 TGGAT
* *
9815300 AATACCATACCTATATTTCTCAACTCGGTATGGATGATACCATACCTACATTTCACAACTC-GTA
1 AATACCATACCTACATTTCACAACTCGGTATGGATGATACCATACCTACATTTCACAACTCAGTA
9815364 TGGAT
66 TGGAT
* * * * * * * *
9815369 GATATCATACCTACGTTTCACATCTCGGTATGGTTAATACCATACCTACGTTTCACAACTCGGTA
1 AATACCATACCTACATTTCACAACTCGGTATGGATGATACCATACCTACATTTCACAACTCAGTA
9815434 TGG--
66 TGGAT
* * * ** * ** *
9815437 --TA--ATACCTACATATCATAGCTAAGTATGGACGACGCCATACCTACATTTCACAACTCGGTA
1 AATACCATACCTACATTTCACAACTCGGTATGGATGATACCATACCTACATTTCACAACTCAGTA
9815498 TGG-T
66 TGGAT
*
9815502 TATACCATACCTACATTTC
1 AATACCATACCTACATTTC
9815521 GCACTTTGCC
Statistics
Matches: 248, Mismatches: 36, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
64 50 0.20
66 2 0.01
67 2 0.01
69 75 0.30
70 119 0.48
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (70 bp):
AATACCATACCTACATTTCACAACTCGGTATGGATGATACCATACCTACATTTCACAACTCAGTA
TGGAT
Found at i:9815343 original size:105 final size:105
Alignment explanation
Indices: 9815161--9815520 Score: 441
Period size: 105 Copynumber: 3.5 Consensus size: 105
9815151 CCTCATTGAA
* * *
9815161 ATACCATACCTACATTTCACAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAACTCAGTA
1 ATACCATACCTACATTTCACAACTCGGTAT-GGATAATACCATACCTACATTTCTCAACTCGGTA
* * *
9815225 TGGATAATACCATACCTACATTTCACGACTCAGTGTGGATG
65 TGGATGATACCATACCTACATTTCACAACTCAGTATGGATG
* * *
9815266 ATACCATACCTATATTTCACAACTCAGTATGGATAATACCATACCTATATTTCTCAACTCGGTAT
1 ATACCATACCTACATTTCACAACTCGGTATGGATAATACCATACCTACATTTCTCAACTCGGTAT
9815331 GGATGATACCATACCTACATTTCACAACTC-GTATGGATG
66 GGATGATACCATACCTACATTTCACAACTCAGTATGGATG
* * * * * *
9815370 ATATCATACCTACGTTTCACATCTCGGTATGGTTAATACCATACCTACGTTTCACAACTCGGTAT
1 ATACCATACCTACATTTCACAACTCGGTATGGATAATACCATACCTACATTTCTCAACTCGGTAT
* * * * *
9815435 -G--G-TA--ATACCTACATATCATAGCTAAGTATGGACG
66 GGATGATACCATACCTACATTTCACAACTCAGTATGGATG
** *
9815469 ACGCCATACCTACATTTCACAACTCGGTATGG-TTATACCATACCTACATTTC
1 ATACCATACCTACATTTCACAACTCGGTATGGATAATACCATACCTACATTTC
9815521 GCACTTTGCC
Statistics
Matches: 223, Mismatches: 30, Indels: 11
0.84 0.11 0.04
Matches are distributed among these distances:
98 34 0.15
99 35 0.16
100 2 0.01
101 1 0.00
103 1 0.00
104 67 0.30
105 83 0.37
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (105 bp):
ATACCATACCTACATTTCACAACTCGGTATGGATAATACCATACCTACATTTCTCAACTCGGTAT
GGATGATACCATACCTACATTTCACAACTCAGTATGGATG
Found at i:9817023 original size:372 final size:372
Alignment explanation
Indices: 9816338--9817081 Score: 1488
Period size: 372 Copynumber: 2.0 Consensus size: 372
9816328 AAATCATTCT
9816338 AACATTGTCTCACAAAATTTATCATGTCTCATTATTTACAATTTCATTGCTTACATAATTTCTTC
1 AACATTGTCTCACAAAATTTATCATGTCTCATTATTTACAATTTCATTGCTTACATAATTTCTTC
9816403 TATAAGAAACTAGACTCAATAATATTTAATTTCATATTTTATTCATCCTCTAATTCCATTTCTAA
66 TATAAGAAACTAGACTCAATAATATTTAATTTCATATTTTATTCATCCTCTAATTCCATTTCTAA
9816468 AATTTTTGGTGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAACAGTTTTAGTACTAAATGT
131 AATTTTTGGTGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAACAGTTTTAGTACTAAATGT
9816533 TGATTTCTATTTTGCCCCAAATTTCACAATTCATACAATTCAGTCTTTGCTCAATTAACCCCTCA
196 TGATTTCTATTTTGCCCCAAATTTCACAATTCATACAATTCAGTCTTTGCTCAATTAACCCCTCA
9816598 GTTAAGATAATTTTCTCAATTAATACTTTTCCTAAACATTATAAGTTATTTCATAGTTATTGAAA
261 GTTAAGATAATTTTCTCAATTAATACTTTTCCTAAACATTATAAGTTATTTCATAGTTATTGAAA
9816663 TTCAGAATTTCTACATAAAACTCTAACTTTAAACTCTTTTACAATTA
326 TTCAGAATTTCTACATAAAACTCTAACTTTAAACTCTTTTACAATTA
9816710 AACATTGTCTCACAAAATTTATCATGTCTCATTATTTACAATTTCATTGCTTACATAATTTCTTC
1 AACATTGTCTCACAAAATTTATCATGTCTCATTATTTACAATTTCATTGCTTACATAATTTCTTC
9816775 TATAAGAAACTAGACTCAATAATATTTAATTTCATATTTTATTCATCCTCTAATTCCATTTCTAA
66 TATAAGAAACTAGACTCAATAATATTTAATTTCATATTTTATTCATCCTCTAATTCCATTTCTAA
9816840 AATTTTTGGTGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAACAGTTTTAGTACTAAATGT
131 AATTTTTGGTGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAACAGTTTTAGTACTAAATGT
9816905 TGATTTCTATTTTGCCCCAAATTTCACAATTCATACAATTCAGTCTTTGCTCAATTAACCCCTCA
196 TGATTTCTATTTTGCCCCAAATTTCACAATTCATACAATTCAGTCTTTGCTCAATTAACCCCTCA
9816970 GTTAAGATAATTTTCTCAATTAATACTTTTCCTAAACATTATAAGTTATTTCATAGTTATTGAAA
261 GTTAAGATAATTTTCTCAATTAATACTTTTCCTAAACATTATAAGTTATTTCATAGTTATTGAAA
9817035 TTCAGAATTTCTACATAAAACTCTAACTTTAAACTCTTTTACAATTA
326 TTCAGAATTTCTACATAAAACTCTAACTTTAAACTCTTTTACAATTA
9817082 GGTGCCAAAC
Statistics
Matches: 372, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
372 372 1.00
ACGTcount: A:0.33, C:0.18, G:0.07, T:0.42
Consensus pattern (372 bp):
AACATTGTCTCACAAAATTTATCATGTCTCATTATTTACAATTTCATTGCTTACATAATTTCTTC
TATAAGAAACTAGACTCAATAATATTTAATTTCATATTTTATTCATCCTCTAATTCCATTTCTAA
AATTTTTGGTGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAACAGTTTTAGTACTAAATGT
TGATTTCTATTTTGCCCCAAATTTCACAATTCATACAATTCAGTCTTTGCTCAATTAACCCCTCA
GTTAAGATAATTTTCTCAATTAATACTTTTCCTAAACATTATAAGTTATTTCATAGTTATTGAAA
TTCAGAATTTCTACATAAAACTCTAACTTTAAACTCTTTTACAATTA
Found at i:9821539 original size:36 final size:36
Alignment explanation
Indices: 9821499--9821577 Score: 117
Period size: 36 Copynumber: 2.2 Consensus size: 36
9821489 CTAATGTAAT
*
9821499 TGTTAATTT-AATTGAATGAAAGTTTATGGATGTATA
1 TGTT-ATTTCAATTGAATGAAAGTTTATGGAAGTATA
*
9821535 TGTTATTTCAATTGAATGGAAGTTTATGGAAGTATA
1 TGTTATTTCAATTGAATGAAAGTTTATGGAAGTATA
9821571 TG-TATTT
1 TGTTATTT
9821578 AGATAAAAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
35 9 0.22
36 31 0.77
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (36 bp):
TGTTATTTCAATTGAATGAAAGTTTATGGAAGTATA
Found at i:9821745 original size:70 final size:70
Alignment explanation
Indices: 9821631--9821844 Score: 245
Period size: 70 Copynumber: 3.1 Consensus size: 70
9821621 TCGCGGATGA
* * * *
9821631 ACAACTATCATCGGCTAT-CTGACTAGTG-TTGGACACAATAATTTGTTGACTCATTCGACTAGT
1 ACAACTATCATCGGTTATCCT-ACTAGCGCTAGG-CGCAATAATTTGTTGACTCATTCGACTAGT
9821694 TCTGGGC
64 TCTGGGC
* * * *
9821701 CCAACTATCATCGGTTATCCTACTAGCGCTAGGCGCAATAATTTGTTGACCCGTTCGACTAATGT
1 ACAACTATCATCGGTTATCCTACTAGCGCTAGGCGCAATAATTTGTTGACTCATTCGACTAGT-T
9821766 -TGGGC
65 CTGGGC
* * * * * *
9821771 ACAACTATAATCGGTTATCCGACTAACGCTGGGCGCAATAACTTGTTGACTCATTCGACTAGTGC
1 ACAACTATCATCGGTTATCCTACTAGCGCTAGGCGCAATAATTTGTTGACTCATTCGACTAGTTC
*
9821836 TGGGT
66 TGGGC
9821841 ACAA
1 ACAA
9821845 AAATGATCTT
Statistics
Matches: 121, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
70 115 0.95
71 6 0.05
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (70 bp):
ACAACTATCATCGGTTATCCTACTAGCGCTAGGCGCAATAATTTGTTGACTCATTCGACTAGTTC
TGGGC
Found at i:9824471 original size:44 final size:43
Alignment explanation
Indices: 9824419--9824521 Score: 129
Period size: 44 Copynumber: 2.3 Consensus size: 43
9824409 CTATAAGAAC
9824419 TCGCACACTTAGTGCAT-A-AATAATTAGCCGAAGCTATAACGATA
1 TCGCACACTTAGTGCATCACAATAA--A-CCGAAGCTATAACGATA
* **
9824463 TCGCACACTTAGTGCCATCACATTAAACCGAAGCTATCTCGATA
1 TCGCACACTTAGTG-CATCACAATAAACCGAAGCTATAACGATA
9824507 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
9824522 CACATAAAGC
Statistics
Matches: 53, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
43 1 0.02
44 43 0.81
45 4 0.08
46 1 0.02
47 4 0.08
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (43 bp):
TCGCACACTTAGTGCATCACAATAAACCGAAGCTATAACGATA
Found at i:9832310 original size:20 final size:20
Alignment explanation
Indices: 9832274--9832311 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9832264 TAACAATTCA
9832274 ACTCATTTAATCACATAATT
1 ACTCATTTAATCACATAATT
*
9832294 ACTCAGTTTCATC-CATAA
1 ACTCA-TTTAATCACATAA
9832312 ACATATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.37, C:0.24, G:0.03, T:0.37
Consensus pattern (20 bp):
ACTCATTTAATCACATAATT
Found at i:9848157 original size:25 final size:25
Alignment explanation
Indices: 9848127--9848174 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
9848117 ACTTATACCC
*
9848127 TTTTACACCAGCTTTATAACCAAAT
1 TTTTACACCAACTTTATAACCAAAT
*
9848152 TTTTACACCAATTTTATAACCAA
1 TTTTACACCAACTTTATAACCAA
9848175 GAAAAACACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.38, C:0.23, G:0.02, T:0.38
Consensus pattern (25 bp):
TTTTACACCAACTTTATAACCAAAT
Found at i:9848858 original size:31 final size:31
Alignment explanation
Indices: 9848820--9848883 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
9848810 AAAAAACAAT
9848820 GCTCACAGAAATTTAGTTTGCAAATTCCTTG
1 GCTCACAGAAATTTAGTTTGCAAATTCCTTG
9848851 GCTCACAGAAATTTAGTTTGCAAATTCCTTG
1 GCTCACAGAAATTTAGTTTGCAAATTCCTTG
9848882 GC
1 GC
9848884 CATCAAGAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.34
Consensus pattern (31 bp):
GCTCACAGAAATTTAGTTTGCAAATTCCTTG
Found at i:9849867 original size:193 final size:194
Alignment explanation
Indices: 9849536--9849923 Score: 706
Period size: 193 Copynumber: 2.0 Consensus size: 194
9849526 GCCCTTTCTT
9849536 TTTACAGAAGTTACAAGTTTTACCTCAGTTTGAAGACTTTGATCTACCTTTAGATTTACCGTGAG
1 TTTACAGAAGTTACAAGTTTTACCTCAGTTTGAAGACTTTGATCTACCTTTAGATTTACCG-GAG
*
9849601 GATTCCGTTCCCGTGTCCTTCCACGATCATCATCAGCATTCCAATCTTGTCTCCCAAGAACAATG
65 GATTCCGTTCCCGTGTCCTACCACGATCATCATCAGCATTCCAATCTTGTCTCCCAAGAACAATG
9849666 AGACCCTCTCCCTGAGAGTCGGGTTTAACCACAATATGCTTCATCTTATCATACAAGGTCAAAGA
130 AGACCCTCTCCCTGAGAGTCGGGTTTAACCACAATATGCTTCATCTTATCATACAAGGTCAAAGA
*
9849731 TTTACAGAAGTTACAAGTTTTACCTCAGTTTGAAGACTTTGATCTACCTTTAGATTTATC-GAGG
1 TTTACAGAAGTTACAAGTTTTACCTCAGTTTGAAGACTTTGATCTACCTTTAGATTTACCGGAGG
* * * *
9849795 ATTCCGTTCCTGTGTCCTACCACGATCATTATCAGCATTCCGATCTTGTCTCCCACGAACAATGA
66 ATTCCGTTCCCGTGTCCTACCACGATCATCATCAGCATTCCAATCTTGTCTCCCAAGAACAATGA
9849860 GACCCTCTCCCTGAGAGTCGGGTTTAACCACAATATGCTTCATCTTATCATACAAGGTCAAAGA
131 GACCCTCTCCCTGAGAGTCGGGTTTAACCACAATATGCTTCATCTTATCATACAAGGTCAAAGA
9849924 ATCATAAACC
Statistics
Matches: 187, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
193 128 0.68
195 59 0.32
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (194 bp):
TTTACAGAAGTTACAAGTTTTACCTCAGTTTGAAGACTTTGATCTACCTTTAGATTTACCGGAGG
ATTCCGTTCCCGTGTCCTACCACGATCATCATCAGCATTCCAATCTTGTCTCCCAAGAACAATGA
GACCCTCTCCCTGAGAGTCGGGTTTAACCACAATATGCTTCATCTTATCATACAAGGTCAAAGA
Found at i:9850431 original size:190 final size:190
Alignment explanation
Indices: 9850108--9850487 Score: 760
Period size: 190 Copynumber: 2.0 Consensus size: 190
9850098 GTGTACAGAC
9850108 GTACCTTCCTCCAAACAATGAGCATAAAGACGATGTTTCATATGCAACTTGCTTGTTAAAGTTTT
1 GTACCTTCCTCCAAACAATGAGCATAAAGACGATGTTTCATATGCAACTTGCTTGTTAAAGTTTT
9850173 CGACATACATATTTGTTCTAGCCTCTTCTATAATGCAACAACAGTCTTCTCTTTCATCACATCCT
66 CGACATACATATTTGTTCTAGCCTCTTCTATAATGCAACAACAGTCTTCTCTTTCATCACATCCT
9850238 GCAAAATTTCGTTGGACAAATGCAGATGTAATTGTGTTACGCATTTTGATCCTTACGCTT
131 GCAAAATTTCGTTGGACAAATGCAGATGTAATTGTGTTACGCATTTTGATCCTTACGCTT
9850298 GTACCTTCCTCCAAACAATGAGCATAAAGACGATGTTTCATATGCAACTTGCTTGTTAAAGTTTT
1 GTACCTTCCTCCAAACAATGAGCATAAAGACGATGTTTCATATGCAACTTGCTTGTTAAAGTTTT
9850363 CGACATACATATTTGTTCTAGCCTCTTCTATAATGCAACAACAGTCTTCTCTTTCATCACATCCT
66 CGACATACATATTTGTTCTAGCCTCTTCTATAATGCAACAACAGTCTTCTCTTTCATCACATCCT
9850428 GCAAAATTTCGTTGGACAAATGCAGATGTAATTGTGTTACGCATTTTGATCCTTACGCTT
131 GCAAAATTTCGTTGGACAAATGCAGATGTAATTGTGTTACGCATTTTGATCCTTACGCTT
9850488 CTTCTCTTCA
Statistics
Matches: 190, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
190 190 1.00
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (190 bp):
GTACCTTCCTCCAAACAATGAGCATAAAGACGATGTTTCATATGCAACTTGCTTGTTAAAGTTTT
CGACATACATATTTGTTCTAGCCTCTTCTATAATGCAACAACAGTCTTCTCTTTCATCACATCCT
GCAAAATTTCGTTGGACAAATGCAGATGTAATTGTGTTACGCATTTTGATCCTTACGCTT
Found at i:9854296 original size:16 final size:16
Alignment explanation
Indices: 9854272--9854302 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9854262 TTAACAGATG
9854272 ACTACCAGACTAACCA
1 ACTACCAGACTAACCA
*
9854288 ACTATCAGACTAACC
1 ACTACCAGACTAACC
9854303 GATACTTAGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.35, G:0.06, T:0.16
Consensus pattern (16 bp):
ACTACCAGACTAACCA
Found at i:9856893 original size:30 final size:30
Alignment explanation
Indices: 9856857--9856954 Score: 160
Period size: 30 Copynumber: 3.3 Consensus size: 30
9856847 AGGTACAAGT
*
9856857 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
9856887 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
* * *
9856917 GGTAGTGGAGCAAGTGTGGTTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
9856947 GGTGGTGG
1 GGTGGTGG
9856955 CAAAGGCTAG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.19, C:0.05, G:0.50, T:0.26
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:9857504 original size:21 final size:21
Alignment explanation
Indices: 9857474--9857518 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
9857464 TCTGATATCA
9857474 TCAATCAGCTCCACTGCAACT
1 TCAATCAGCTCCACTGCAACT
* * *
9857495 TCAATTAGCTTCACTGTAACT
1 TCAATCAGCTCCACTGCAACT
9857516 TCA
1 TCA
9857519 GGGATATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (21 bp):
TCAATCAGCTCCACTGCAACT
Found at i:9857739 original size:87 final size:87
Alignment explanation
Indices: 9857588--9857793 Score: 236
Period size: 87 Copynumber: 2.4 Consensus size: 87
9857578 TCCTGAGCTT
* * * *
9857588 AACTCATTTCTCGCAATATGAATTGACTCTTTAAAACTAGACATTAAAAACAGAAATTGAAAATA
1 AACTCACTTCTCGCAATATGAGTTGA-TTTTTAAAACTAGAAATTAAAAACAGAAATTGAAAATA
* *
9857653 GCTCAGCACGTGAGCCAAGGCTC
65 CCTCAGCACGTGACCCAAGGCTC
* **
9857676 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAAC-A-AAATTTGTAAAACAGATTTTGAAAAT
1 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACTAGAAA-TT-AAAAACAGAAATTGAAAAT
* * * *
9857739 ACCTCGGTATGTGACCCGAGGCTC
64 ACCTCAGCACGTGACCCAAGGCTC
* *
9857763 AACTCACCTCTCGTAATATGAGTTGATTTTT
1 AACTCACTTCTCGCAATATGAGTTGATTTTT
9857794 GCAAAGCATA
Statistics
Matches: 101, Mismatches: 15, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
85 2 0.02
86 3 0.03
87 72 0.71
88 24 0.24
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.30
Consensus pattern (87 bp):
AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACTAGAAATTAAAAACAGAAATTGAAAATAC
CTCAGCACGTGACCCAAGGCTC
Found at i:9857918 original size:103 final size:97
Alignment explanation
Indices: 9857731--9858202 Score: 404
Period size: 103 Copynumber: 4.9 Consensus size: 97
9857721 AAAACAGATT
** *
9857731 TTGAAAATACCTCGGTATGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGA--TTTTT
1 TTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
9857794 G-CAAAGCATAAATTGAAAAAAAAATAAAAATAAAAATCAA
66 GACAAA-CATAAATTG----AAAAA-AAAAA-AAAAA--AA
* *
9857834 TTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 TTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
*
9857899 GACAAACATAAATTG---AAAAAAAAAAGAAA
66 GACAAACATAAATTGAAAAAAAAAAAAAAAAA
* * * *
9857928 TTGAAAATATCTCAGCGTGT--CCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 TTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* * * *
9857991 GAAAAACA-AAATTTG------AAAAACAGAAT
66 GACAAACATAAA-TTGAAAAAAAAAAAAAAAAA
* ** * * *
9858017 TTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTT
1 TTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
*
9858082 GA-AACACATAAATTAAAAAAAAAGAAATTAAAAACAGAA
66 GACAA-ACATAAATT--GAAAAAA-AAA--AAAAA-A-AA
** * * *
9858121 TTTGAAAGGACCTCGACGTGTGGCCCGAGACTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
1 -TTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
9858184 TGACAAACAAAAATTGAAA
65 TGACAAACATAAATTGAAA
9858203 TTACCTCAGC
Statistics
Matches: 308, Mismatches: 38, Indels: 48
0.78 0.10 0.12
Matches are distributed among these distances:
89 28 0.09
90 2 0.01
91 46 0.15
92 54 0.18
94 20 0.06
96 4 0.01
97 5 0.02
98 2 0.01
100 3 0.01
101 3 0.01
102 3 0.01
103 69 0.22
104 3 0.01
105 62 0.20
106 4 0.01
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (97 bp):
TTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
GACAAACATAAATTGAAAAAAAAAAAAAAAAA
Found at i:9858007 original size:14 final size:14
Alignment explanation
Indices: 9857988--9858023 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
9857978 AGTTGATTTT
9857988 TTTGAAAAACAAAA
1 TTTGAAAAACAAAA
*
9858002 TTTGAAAAACAGAA
1 TTTGAAAAACAAAA
9858016 TTTGAAAA
1 TTTGAAAA
9858024 TACCTCAGCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.58, C:0.06, G:0.11, T:0.25
Consensus pattern (14 bp):
TTTGAAAAACAAAA
Found at i:9858062 original size:91 final size:92
Alignment explanation
Indices: 9857832--9858115 Score: 371
Period size: 92 Copynumber: 3.1 Consensus size: 92
9857822 AATAAAAATC
*
9857832 AATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGTGATC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
9857897 TTGACAAACATAAA-TTGAAAAAAAAAAGA
65 TTGAAAAACATAAATTTG--AAAAAAAAGA
* ** *
9857926 AATTGAAAATATCTCAGCGTGTCCT-GAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AATTGAAAATACCTCAGCGTGTGATCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
9857990 TGAAAAACA-AAATTTG-AAAAACAGA
66 TGAAAAACATAAATTTGAAAAAAAAGA
* * * *
9858015 ATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTT
1 AATTGAAAATACCTCAGCGTGTGA-TCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* *
9858080 TTGAAACACATAAA-TTAAAAAAAAAGA
65 TTGAAAAACATAAATTTGAAAAAAAAGA
*
9858107 AATTAAAAA
1 AATTGAAAA
9858116 CAGAATTTGA
Statistics
Matches: 165, Mismatches: 20, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
89 28 0.17
90 1 0.01
91 48 0.29
92 67 0.41
94 21 0.13
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (92 bp):
AATTGAAAATACCTCAGCGTGTGATCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TGAAAAACATAAATTTGAAAAAAAAGA
Found at i:9858186 original size:286 final size:282
Alignment explanation
Indices: 9857633--9858202 Score: 722
Period size: 286 Copynumber: 2.0 Consensus size: 282
9857623 ACTAGACATT
* *
9857633 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAAAAGAAATTGAAAATAGCTCAG-ACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* * * * *
9857698 TTGATTTTTAAAACAAAATTTGTAAAACAGATTTTGAAAATACCTCGGTATGTGACCCGAGGCTC
65 TTGATTTTTAAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCAGCATGTGACCCAAGGCTC
* * * *
9857763 AACTCACCTCTCGTAATATGAGTTGATTTTTGCAAAGCATAAATTGAAAAAAAAATAAAAATAAA
130 AACTCACCACTCGCAATATGAGCTGATTTTTGCAAAACATAAATTGAAAAAAAAATAAAAATAAA
* * * * *
9857828 AATCAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
195 AATCAATTGAAAAGACCTCGACGTGTGACCCGAGACTCAACTCACCTCTCGCAATATGAGTTGA-
*
9857893 TTTTTTGACAAACATAAATTGAAA
259 TTTTTTGACAAACAAAAATTGAAA
* * * *
9857917 AAAAAAAGAAATTGAAAATATCTCAG-CGTG-TCCTGAGGCTGAACTCACCTCTCGCAATATGAG
1 AAAAAAAGAAATTGAAAATAGCTCAGACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAG
* **
9857980 TTGATTTTTTTGAAAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAG
65 TTGA--TTTTT--AAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCAGCATGTGACCCAAG
*
9858045 GCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTG-AAACACATAAATT-AAAAAAAAA-GA
126 GCTCAACTCACCACTCGCAATATGAGCTGA--TTTTTGCAAA-ACATAAATTGAAAAAAAAATAA
* * *
9858107 AATTAAAAA-CAGAATTTGAAAGGACCTCGACGTGTGGCCCGAGACTCAACTCACCTCTCGCAAT
188 AAATAAAAATC--AA-TTGAAAAGACCTCGACGTGTGACCCGAGACTCAACTCACCTCTCGCAAT
9858171 ATGAGTTGA-TTTTTGACAAACAAAAATTGAAA
250 ATGAGTTGATTTTTTGACAAACAAAAATTGAAA
9858203 TTACCTCAGC
Statistics
Matches: 247, Mismatches: 28, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
281 2 0.01
282 34 0.14
284 29 0.12
285 1 0.00
286 102 0.41
287 14 0.06
288 65 0.26
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (282 bp):
AAAAAAAGAAATTGAAAATAGCTCAGACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTAAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCAGCATGTGACCCAAGGCTCA
ACTCACCACTCGCAATATGAGCTGATTTTTGCAAAACATAAATTGAAAAAAAAATAAAAATAAAA
ATCAATTGAAAAGACCTCGACGTGTGACCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATT
TTTTGACAAACAAAAATTGAAA
Found at i:9858259 original size:75 final size:75
Alignment explanation
Indices: 9858151--9858500 Score: 471
Period size: 75 Copynumber: 4.7 Consensus size: 75
9858141 TGGCCCGAGA
* *
9858151 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATTACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAAAAATTGAAAATACCTCAACG
9858214 TGTCCTGAGG
66 TGTCCTGAGG
* * * *
9858224 CTCAACTCACCTATCGCAATATGAGCTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAAAAATTGAAAATACCTCAACG
*
9858289 TGTCTTGAGG
66 TGTCCTGAGG
* * * *
9858299 TTCAACTCACCTCTCGCAATATGAGCTGATTTTTCTT-A-AAGACAGATATTGAAAATACCTCAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTT-TTGACAA-ACAAAAATTGAAAATACCTCAA
*
9858362 CGTGTCTTGAGG
64 CGTGTCCTGAGG
* *
9858374 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATTACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAAAAATTGAAAATACCTCAACG
9858437 TGTCCTGAGG
66 TGTCCTGAGG
* * * *
9858447 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTTT-AGAAACATAAATTAAAAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAAAAATTGAAAA
9858501 AACGAAAATT
Statistics
Matches: 247, Mismatches: 22, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
72 2 0.01
73 88 0.36
74 18 0.07
75 137 0.55
76 2 0.01
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (75 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAAAAATTGAAAATACCTCAACG
TGTCCTGAGG
Found at i:9858439 original size:148 final size:147
Alignment explanation
Indices: 9858151--9858567 Score: 496
Period size: 148 Copynumber: 2.7 Consensus size: 147
9858141 TGGCCCGAGA
* * *
9858151 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTT-TGACAAACAAAAATTGAAATTACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTCTTA-AAACAGAAATTGAAAATACCTCAGCG
* * *
9858214 TGTCCTGAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTTTGAAAAACAGAAATTGAAAA
65 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAAAAATTGAAAA
*
9858279 TACCTCAACGTGTCTTGAGG
128 TACCTCAACGTGTCCTGAGG
* * * *
9858299 TTCAACTCACCTCTCGCAATATGAGCTGATTTTTCTTAAAGACAGATATTGAAAATACCTCAACG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTCTTAAA-ACAGAAATTGAAAATACCTCAGCG
* * *
9858364 TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTA
65 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTGAAAATA
*
9858429 CCTCAGCGTGTCCTGAGG
130 CCTCAACGTGTCCTGAGG
* *
9858447 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAGAAACATAAATTAAAAAAACGAAAATTG
1 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT-----C-----TT-AAAACA-G-AAATTG
9858512 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
51 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
9858568 GAAAAGCAGA
Statistics
Matches: 229, Mismatches: 22, Indels: 22
0.84 0.08 0.08
Matches are distributed among these distances:
148 92 0.40
149 6 0.03
150 63 0.28
155 1 0.00
160 4 0.02
161 4 0.02
162 59 0.26
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.30
Consensus pattern (147 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTCTTAAAACAGAAATTGAAAATACCTCAGCGT
GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTGAAAATAC
CTCAACGTGTCCTGAGG
Found at i:9858705 original size:14 final size:13
Alignment explanation
Indices: 9858670--9858714 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
9858660 TTGATTTTTG
9858670 AAAAACAGAAATT
1 AAAAACAGAAATT
*
9858683 AAAAGCAGAAATT
1 AAAAACAGAAATT
9858696 GAAAAACAGAAATT
1 -AAAAACAGAAATT
9858710 AAAAA
1 AAAAA
9858715 TACCTCGGCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.69, C:0.07, G:0.11, T:0.13
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:9858735 original size:100 final size:101
Alignment explanation
Indices: 9858498--9858858 Score: 450
Period size: 100 Copynumber: 3.7 Consensus size: 101
9858488 CATAAATTAA
*
9858498 AAAAAC-GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAG-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
9858562 TGA--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
65 TGATTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTG
9858597 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
9858662 GATTTTTGAAAAACAGAAATT-AAAAGCAGAAATTG
66 GATTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTG
* * * *
9858697 AAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
9858762 GATTTTTGAAAAGCATAAATT--------G--A---
66 GATTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTG
* * *
9858785 AAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
9858850 TTGATTTTT
64 TTGATTTTT
9858859 TTGAAAGATA
Statistics
Matches: 238, Mismatches: 19, Indels: 19
0.86 0.07 0.07
Matches are distributed among these distances:
88 24 0.10
90 41 0.17
91 1 0.00
93 1 0.00
99 64 0.27
100 92 0.39
101 15 0.06
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.24
Consensus pattern (101 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTG
Found at i:9858851 original size:90 final size:87
Alignment explanation
Indices: 9858683--9858858 Score: 253
Period size: 90 Copynumber: 2.0 Consensus size: 87
9858673 AACAGAAATT
* * *
9858683 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTC
1 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGACCCGAGGCCCAACTCACCTC
9858748 TCGCAATATGAGTTGATTTTTG
66 TCGCAATATGAGTTGATTTTTG
* * * * *
9858770 AAAAGCATAAATTGAAAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCAC
1 AAAAGCAGAAATTG-AAAAACAGAAATTAAAAATACCTC-G-GCGTGACCCGAGGCCCAACTCAC
9858835 CTCTCGCAATATGAGTTGATTTTT
63 CTCTCGCAATATGAGTTGATTTTT
9858859 TTGAAAGATA
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
87 13 0.17
88 22 0.28
89 1 0.01
90 42 0.54
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (87 bp):
AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGACCCGAGGCCCAACTCACCTC
TCGCAATATGAGTTGATTTTTG
Found at i:9869328 original size:58 final size:58
Alignment explanation
Indices: 9869258--9869375 Score: 227
Period size: 58 Copynumber: 2.0 Consensus size: 58
9869248 TAACCGAACG
*
9869258 TAAATCAACACCCTTTTATGATAAAATGTCATGCGAAAATGATCAAAATACAACAAGT
1 TAAATCAACACCCTTTTATGATAAAATGTCATGAGAAAATGATCAAAATACAACAAGT
9869316 TAAATCAACACCCTTTTATGATAAAATGTCATGAGAAAATGATCAAAATACAACAAGT
1 TAAATCAACACCCTTTTATGATAAAATGTCATGAGAAAATGATCAAAATACAACAAGT
9869374 TA
1 TA
9869376 GTATTATATA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.47, C:0.16, G:0.10, T:0.26
Consensus pattern (58 bp):
TAAATCAACACCCTTTTATGATAAAATGTCATGAGAAAATGATCAAAATACAACAAGT
Found at i:9870732 original size:25 final size:26
Alignment explanation
Indices: 9870674--9870733 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 26
9870664 GTAGAAAAAA
*
9870674 AATATATATATAAATAATATAGTATT
1 AATATATATATAAATAAAATAGTATT
* *
9870700 AA-AGATATATACATAAAATAGTA-T
1 AATATATATATAAATAAAATAGTATT
9870724 AATATATATA
1 AATATATATA
9870734 CGTAATATAG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 3 0.10
25 24 0.83
26 2 0.07
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.37
Consensus pattern (26 bp):
AATATATATATAAATAAAATAGTATT
Found at i:9870795 original size:25 final size:23
Alignment explanation
Indices: 9870763--9870808 Score: 74
Period size: 25 Copynumber: 1.9 Consensus size: 23
9870753 TATACCTAAC
9870763 ATATTAAAAGAATATATATAATATA
1 ATATTAAAA-AATATA-ATAATATA
9870788 ATATTAAAAAATATAATAATA
1 ATATTAAAAAATATAATAATA
9870809 AAAAAAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 6 0.29
24 6 0.29
25 9 0.43
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (23 bp):
ATATTAAAAAATATAATAATATA
Found at i:9870800 original size:15 final size:15
Alignment explanation
Indices: 9870782--9870813 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
9870772 GAATATATAT
*
9870782 AATATAATATTAAAA
1 AATATAATAATAAAA
9870797 AATATAATAATAAAA
1 AATATAATAATAAAA
9870812 AA
1 AA
9870814 AAAGAGAGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AATATAATAATAAAA
Found at i:9871324 original size:30 final size:30
Alignment explanation
Indices: 9871283--9871381 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
9871273 TAGGTACAAA
9871283 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* * * *
9871313 AGGTAGTGGAGCAAGTATGGCTAATGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
9871343 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
9871373 TGGTGGTGG
1 TGGTGGTGG
9871382 CAAAGGCTAG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.19, C:0.06, G:0.48, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:9874815 original size:16 final size:16
Alignment explanation
Indices: 9874791--9874821 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9874781 TTAACAGATG
9874791 ACTACCAGACTAACCA
1 ACTACCAGACTAACCA
*
9874807 ACTATCAGACTAACC
1 ACTACCAGACTAACC
9874822 GATACTTAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.35, G:0.06, T:0.16
Consensus pattern (16 bp):
ACTACCAGACTAACCA
Found at i:9876812 original size:21 final size:20
Alignment explanation
Indices: 9876788--9876852 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 20
9876778 AGGAAAAAAA
9876788 AGACTAGATGGATATAAAAGT
1 AGACTAGATGGA-ATAAAAGT
*
9876809 AGACT-GAAAGGAA-AGAAA--
1 AGACTAG-ATGGAATA-AAAGT
9876827 AGACTAGATGGCAATAAAAGT
1 AGACTAGATGG-AATAAAAGT
9876848 AGACT
1 AGACT
9876853 GGAAAAGGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
18 8 0.23
19 7 0.20
20 6 0.17
21 14 0.40
ACGTcount: A:0.51, C:0.08, G:0.25, T:0.17
Consensus pattern (20 bp):
AGACTAGATGGAATAAAAGT
Found at i:9876829 original size:39 final size:39
Alignment explanation
Indices: 9876775--9876853 Score: 133
Period size: 39 Copynumber: 2.0 Consensus size: 39
9876765 TGTGCATCAA
9876775 GAAAGGAAAAAAAAGACTAGATGG-ATATAAAAGTAGACT
1 GAAAGGAAAAAAAAGACTAGATGGCA-ATAAAAGTAGACT
*
9876814 GAAAGGAAAGAAAAGACTAGATGGCAATAAAAGTAGACT
1 GAAAGGAAAAAAAAGACTAGATGGCAATAAAAGTAGACT
9876853 G
1 G
9876854 GAAAAGGCAT
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
39 37 0.97
40 1 0.03
ACGTcount: A:0.54, C:0.06, G:0.25, T:0.14
Consensus pattern (39 bp):
GAAAGGAAAAAAAAGACTAGATGGCAATAAAAGTAGACT
Found at i:9885514 original size:46 final size:46
Alignment explanation
Indices: 9885389--9885608 Score: 187
Period size: 46 Copynumber: 4.7 Consensus size: 46
9885379 TGGGTTAAGC
* * *
9885389 GCCGATGCAATGTCCCAGACATGGTCTTACATTGGCTCAT-AGCTCAA
1 GCCGATGC-ATGTCCCAGACATGGTCTTACACTAGCT-ATCATCTCAA
* * * *
9885436 GTCGATGCCATGTCCCAGCCATGGTCTTACACTAACTATCATCTCTTA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTATCATCTC-AA
* *
9885484 GCCGATGCATGTCCCAGACAT-GTCTTACACTAGCT-TACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTAT-CATCTC-AA
** * *
9885530 GCCGATGCATGTCCCAGACAT-GTCTTACACTAGCCCTCGTATCAA
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTATCATCTCAA
* * **
9885575 TCCCAATGCCATGTCCTGGACATGGTCTTACACT
1 -GCCGATG-CATGTCCCAGACATGGTCTTACACT
9885609 GGCTTACACG
Statistics
Matches: 144, Mismatches: 21, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
45 2 0.01
46 64 0.44
47 60 0.42
48 18 0.12
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTATCATCTCAA
Found at i:9891164 original size:19 final size:19
Alignment explanation
Indices: 9891140--9891176 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
9891130 GTGGGTGATA
9891140 GAACTCTCGTTAAATTCTG
1 GAACTCTCGTTAAATTCTG
9891159 GAACTCTCGTTAAATTCT
1 GAACTCTCGTTAAATTCT
9891177 AGAAAGATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.38
Consensus pattern (19 bp):
GAACTCTCGTTAAATTCTG
Found at i:9895792 original size:23 final size:22
Alignment explanation
Indices: 9895759--9895813 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 22
9895749 ATAAAAAACA
*
9895759 TTTATTATATTTATTTTTAGTATT
1 TTTA-TATATTTATATTT-GTATT
*
9895783 TTTATATATTTATATTTGTGTT
1 TTTATATATTTATATTTGTATT
9895805 TTTAATATA
1 TTT-ATATA
9895814 AATATCTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 7 0.25
23 17 0.61
24 4 0.14
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.67
Consensus pattern (22 bp):
TTTATATATTTATATTTGTATT
Found at i:9896845 original size:13 final size:13
Alignment explanation
Indices: 9896827--9896853 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
9896817 TCAATGTGAC
9896827 ATCATTTATTCGT
1 ATCATTTATTCGT
9896840 ATCATTTATTCGT
1 ATCATTTATTCGT
9896853 A
1 A
9896854 CTAATCATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.15, G:0.07, T:0.52
Consensus pattern (13 bp):
ATCATTTATTCGT
Found at i:9897133 original size:30 final size:31
Alignment explanation
Indices: 9897097--9897155 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
9897087 AACAACCCAA
9897097 TGGCTTAAA-AAAAACTTTCGAATAGTTCGT
1 TGGCTTAAATAAAAACTTTCGAATAGTTCGT
*
9897127 TGGCTTAAATGAAAACTTTCGAATAGTTC
1 TGGCTTAAATAAAAACTTTCGAATAGTTC
9897156 AATGGACCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 9 0.33
31 18 0.67
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.34
Consensus pattern (31 bp):
TGGCTTAAATAAAAACTTTCGAATAGTTCGT
Found at i:9903928 original size:17 final size:17
Alignment explanation
Indices: 9903855--9903928 Score: 55
Period size: 17 Copynumber: 4.2 Consensus size: 17
9903845 TTGCATTATA
*
9903855 TATATTATTTATTTTGT
1 TATATTATTTATTTTGC
*
9903872 TATATT-TGTATTTTTGC
1 TATATTATTTA-TTTTGC
9903889 TATATGTTATATGTATTTT--
1 TATA--TTAT-T-TATTTTGC
*
9903908 TATATTATTTATTTTAC
1 TATATTATTTATTTTGC
9903925 TATA
1 TATA
9903929 CATTTTTAGT
Statistics
Matches: 46, Mismatches: 3, Indels: 16
0.71 0.05 0.25
Matches are distributed among these distances:
15 6 0.13
16 4 0.09
17 23 0.50
19 6 0.13
20 1 0.02
21 4 0.09
22 2 0.04
ACGTcount: A:0.26, C:0.03, G:0.07, T:0.65
Consensus pattern (17 bp):
TATATTATTTATTTTGC
Found at i:9904033 original size:24 final size:24
Alignment explanation
Indices: 9904007--9904054 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
9903997 ATTTTTATTT
*
9904007 ATATCATTA-ATTATA-TTATAAA
1 ATATAATTATATTATATTTATAAA
*
9904029 ATATAATTATATTTTATTTATAAA
1 ATATAATTATATTATATTTATAAA
9904053 AT
1 AT
9904055 TAGTAAATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 8 0.36
23 5 0.23
24 9 0.41
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (24 bp):
ATATAATTATATTATATTTATAAA
Found at i:9907609 original size:18 final size:18
Alignment explanation
Indices: 9907567--9907610 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
9907557 AAAATAGATG
*
9907567 GGCAAAATTATAAATTTT
1 GGCAAAGTTATAAATTTT
*
9907585 GGCAAAGTTGTAAATTTT
1 GGCAAAGTTATAAATTTT
9907603 GGCAAAGT
1 GGCAAAGT
9907611 GTGTCAATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.34
Consensus pattern (18 bp):
GGCAAAGTTATAAATTTT
Found at i:9915195 original size:14 final size:15
Alignment explanation
Indices: 9915161--9915203 Score: 52
Period size: 14 Copynumber: 2.7 Consensus size: 15
9915151 TAAAATAAAA
9915161 ATTTTATATAGATATTTT
1 ATTTTATATA-A-A-TTT
9915179 ATTTTA-ATAAATTT
1 ATTTTATATAAATTT
9915193 ATTTTATATAA
1 ATTTTATATAA
9915204 CATATCTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 9 0.38
15 5 0.21
16 1 0.04
17 3 0.12
18 6 0.25
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (15 bp):
ATTTTATATAAATTT
Found at i:9923262 original size:18 final size:18
Alignment explanation
Indices: 9923252--9923307 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
9923242 CTCGTCGTCG
9923252 TCGTCGTCCTCATCATCA
1 TCGTCGTCCTCATCATCA
* *
9923270 TCGTCGTCTTGATCATCA
1 TCGTCGTCCTCATCATCA
* *
9923288 TCAG-AGTCATCATCATCA
1 TC-GTCGTCCTCATCATCA
9923306 TC
1 TC
9923308 TTTACCCTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
18 31 0.97
19 1 0.03
ACGTcount: A:0.21, C:0.32, G:0.12, T:0.34
Consensus pattern (18 bp):
TCGTCGTCCTCATCATCA
Found at i:9938468 original size:22 final size:22
Alignment explanation
Indices: 9938442--9938488 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
9938432 TTTAGGTAAG
*
9938442 AAAA-TAGGTGTTTTAAAGGGTT
1 AAAATTAGGTGTATT-AAGGGTT
*
9938464 AAAATTGGGTGTATTAAGGGTT
1 AAAATTAGGTGTATTAAGGGTT
9938486 AAA
1 AAA
9938489 CCACCAGGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.38, C:0.00, G:0.28, T:0.34
Consensus pattern (22 bp):
AAAATTAGGTGTATTAAGGGTT
Found at i:9940619 original size:20 final size:20
Alignment explanation
Indices: 9940573--9940625 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
9940563 ATGTATTTAC
*
9940573 TTAATATTTAAGAAATAATAA
1 TTAATAATTAA-AAATAATAA
9940594 TT-ATAATTAAAAAT-ATAA
1 TTAATAATTAAAAATAATAA
9940612 TATAATAATATAAA
1 T-TAATAAT-TAAA
9940626 GTAAGGTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
18 5 0.18
19 5 0.18
20 12 0.43
21 6 0.21
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (20 bp):
TTAATAATTAAAAATAATAA
Found at i:9940623 original size:13 final size:13
Alignment explanation
Indices: 9940587--9940624 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
9940577 TATTTAAGAA
9940587 ATAATAATTATAAT
1 ATAATAA-TATAAT
*
9940601 -TAAAAATATAAT
1 ATAATAATATAAT
9940613 ATAATAATATAA
1 ATAATAATATAA
9940625 AGTAAGGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
ATAATAATATAAT
Done.