Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 34 of 167
Found at i:10269296 original size:132 final size:132
Alignment explanation
Indices: 10269148--10269389 Score: 360
Period size: 132 Copynumber: 1.8 Consensus size: 132
10269138 ATGGAATCTC
* * *
10269148 GAAGGGATATTTGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
1 GAAGGAATATTCGATTATTTCGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
* * *
10269213 GCGAATTGCCAAATATCAAA-CTTTACCTTCGTTTTAAAGAATTTTTAAAAGGCATGAGTGAAAG
66 GCGAATTACCAAATATCAAATC-TCACCTTCATTTTAAAGAATTTTTAAAAGGCATGAGTGAAAG
10269277 TTT
130 TTT
* *
10269280 GAAGGAATATTCGATTATTTCGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACTATTCC
1 GAAGGAATATTCGATTATTTCGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
* * * *
10269345 GTGAGTTACCAAATATCGAATCTCATCTTCATTTTAAAGAATTTT
66 GCGAATTACCAAATATCAAATCTCACCTTCATTTTAAAGAATTTT
10269390 AAATAATTGT
Statistics
Matches: 97, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
132 96 0.99
133 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (132 bp):
GAAGGAATATTCGATTATTTCGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCC
GCGAATTACCAAATATCAAATCTCACCTTCATTTTAAAGAATTTTTAAAAGGCATGAGTGAAAGT
TT
Found at i:10272802 original size:36 final size:36
Alignment explanation
Indices: 10272762--10272830 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
10272752 GAAAGAAAAA
10272762 TTAGAGAAAATAAATAAATAGGAAACAACAACAAAG
1 TTAGAGAAAATAAATAAATAGGAAACAACAACAAAG
10272798 TTAGAGAAAATAAATAAATAGGAAACAACAACA
1 TTAGAGAAAATAAATAAATAGGAAACAACAACA
10272831 TTTCATTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.64, C:0.09, G:0.13, T:0.14
Consensus pattern (36 bp):
TTAGAGAAAATAAATAAATAGGAAACAACAACAAAG
Found at i:10276751 original size:16 final size:17
Alignment explanation
Indices: 10276720--10276753 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
10276710 GATAAAAAAT
*
10276720 GAATACTACGATATAAA
1 GAATAATACGATATAAA
10276737 GAATAATAC-ATATAAA
1 GAATAATACGATATAAA
10276753 G
1 G
10276754 CAAAAAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.56, C:0.09, G:0.12, T:0.24
Consensus pattern (17 bp):
GAATAATACGATATAAA
Found at i:10277227 original size:16 final size:16
Alignment explanation
Indices: 10277206--10277244 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
10277196 GATAAGTAGT
10277206 AATAATA-TATAATTAA
1 AATAATACTATAA-TAA
10277222 AATAATACTTATAATAA
1 AATAATAC-TATAATAA
10277239 AATAAT
1 AATAAT
10277245 TTTATAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.33
17 9 0.43
18 5 0.24
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (16 bp):
AATAATACTATAATAA
Found at i:10277251 original size:16 final size:17
Alignment explanation
Indices: 10277167--10277253 Score: 58
Period size: 16 Copynumber: 5.1 Consensus size: 17
10277157 AAAAGAGATG
10277167 TAAAATAATA-TT-TAA
1 TAAAATAATACTTATAA
* *
10277182 GAAAAATAATACATGATAA
1 -TAAAATAATAC-TTATAA
*
10277201 GTAGTAATAATA--TATAA
1 -TA-AAATAATACTTATAA
10277218 TTAAAATAATACTTATAA
1 -TAAAATAATACTTATAA
*
10277236 TAAAATAAT-TTTATAA
1 TAAAATAATACTTATAA
10277252 TA
1 TA
10277254 TATTATATAA
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
16 24 0.42
17 15 0.26
18 6 0.11
19 5 0.09
20 7 0.12
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (17 bp):
TAAAATAATACTTATAA
Found at i:10278870 original size:81 final size:82
Alignment explanation
Indices: 10278773--10278953 Score: 231
Period size: 83 Copynumber: 2.2 Consensus size: 82
10278763 GAGTTGTAGA
* * * *
10278773 GATGCCAAATCATCTTGA-TTATTTGAGAACTTTTGAGAACCATATCTGCTATGTCCTCG-TTTT
1 GATGCCAAATCATCTTGAGTTATTTAAGAACATTTGAGAACCATATCTGCAATGTCCTCGATTTA
*
10278836 TTCCTTTGTAAGCACAAG
66 TTCC-TTGTAAACACAAG
* * **
10278854 GATGCCAAACCATCTTGAGTTTGTTTAAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTT
1 GATGCCAAATCATCTTGAG-TTATTTAAGAACATTTGAGAACCATATCTGCAATGTCCTCGATTT
10278919 ATTCCTTGTAAACACAAG
65 ATTCCTTGTAAACACAAG
* *
10278937 AATACCAAATCATCTTG
1 GATGCCAAATCATCTTG
10278954 GATCTGCTTC
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
81 17 0.20
83 61 0.72
84 7 0.08
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.35
Consensus pattern (82 bp):
GATGCCAAATCATCTTGAGTTATTTAAGAACATTTGAGAACCATATCTGCAATGTCCTCGATTTA
TTCCTTGTAAACACAAG
Found at i:10279092 original size:119 final size:119
Alignment explanation
Indices: 10278881--10279191 Score: 460
Period size: 119 Copynumber: 2.6 Consensus size: 119
10278871 AGTTTGTTTA
* * * * * * *
10278881 AGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTATTCCTTGTAAACACAAGAATACCAAA
1 AGAACATTTGAGAGTCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAA
* * *
10278946 TCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTACATTTG
66 CCATCTTGGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTACATCTG
* *
10279000 AGAACTTTTGAGAGTCAAATCTGCTATGTCTTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAA
1 AGAACATTTGAGAGTCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAA
*
10279065 CCATCTTGGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTATATCTG
66 CCATCTTGGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTACATCTG
* * * *
10279119 AGAACGTCTGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCTAAA
1 AGAACATTTGAGAGTCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAA
*
10279184 CCCTCTTG
66 CCATCTTG
10279192 AGTTTGTTTA
Statistics
Matches: 173, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
119 173 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (119 bp):
AGAACATTTGAGAGTCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAA
CCATCTTGGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTACATCTG
Found at i:10279217 original size:202 final size:202
Alignment explanation
Indices: 10279007--10279376 Score: 578
Period size: 202 Copynumber: 1.8 Consensus size: 202
10278997 TTGAGAACTT
* * * * *
10279007 TTGAGAGTCAAATCTGCTATGTCTTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTT
1 TTGAGAGTCAAATCTGCAATGTCCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACCATCTT
*
10279072 GGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTATATCTGAGAACGTCTGAGAATCAA
66 GGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGAATCAA
*
10279137 ATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCTAAACCCTCTTGAGTTTGTTTA
131 ATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAGGATGCTAAACCCTCTTGAGTTTGTTTA
10279202 AGAACAA
196 AGAACAA
* * *
10279209 TTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
1 TTGAGAGTCAAATCTGCAATGTCCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACCATCTT
* * * * * * *
10279274 GGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTACATTTGAGAACTTTTGAGAGTCAT
66 GGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGAATCAA
*
10279339 ATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAG
131 ATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAG
10279377 AATACCAAGT
Statistics
Matches: 150, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
202 150 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (202 bp):
TTGAGAGTCAAATCTGCAATGTCCTCGATTTGTCCCTTGTAAACACAAGAATACCAAACCATCTT
GGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTACATCTGAGAACGTCTGAGAATCAA
ATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAGGATGCTAAACCCTCTTGAGTTTGTTTA
AGAACAA
Found at i:10279393 original size:321 final size:321
Alignment explanation
Indices: 10278796--10279495 Score: 1166
Period size: 321 Copynumber: 2.2 Consensus size: 321
10278786 CTTGATTATT
* * * * * * *
10278796 TGAGAACTTTTGAGAACCATATCTGCTATGTCCTCGTTTTTTCCTTTGTAAGCACAAGGATGCCA
1 TGAGAACGTCTGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCA
*
10278861 AACCATCTTGAGTTTGTTTAAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTATTCCTT
66 AACCATCTTGAGTTTGTTTAAGAACAATTGAGAGTCATATCTGCAATGTCCTCGATTTATTCCTT
10278926 GTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTG
131 GTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTG
* *
10278991 CTACATTTGAGAACTTTTGAGAGTCAAATCTGCTATGTCTTCGATTTGTCCCTTGTAAGCACAAG
196 CTACATTTGAGAACTTTTGAGAGTCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAG
* *
10279056 GATGCCAAACCATCTTGGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTATATC
261 AATACCAAACCATCTTGGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTATATC
*
10279117 TGAGAACGTCTGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCTA
1 TGAGAACGTCTGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCA
* *
10279182 AACCCTCTTGAGTTTGTTTAAGAACAATTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTT
66 AACCATCTTGAGTTTGTTTAAGAACAATTGAGAGTCATATCTGCAATGTCCTCGATTTATTCCTT
*
10279247 GTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTG
131 GTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTG
* *
10279312 CTACATTTGAGAACTTTTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAG
196 CTACATTTGAGAACTTTTGAGAGTCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAG
** * *
10279377 AATACCAAGTCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATT
261 AATACCAAACCATCTTGGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTATATC
* * * *
10279438 TGAGAATGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAG
1 TGAGAACGTCTGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAG
10279496 AAAACCAAAT
Statistics
Matches: 353, Mismatches: 26, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
321 353 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.34
Consensus pattern (321 bp):
TGAGAACGTCTGAGAATCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCA
AACCATCTTGAGTTTGTTTAAGAACAATTGAGAGTCATATCTGCAATGTCCTCGATTTATTCCTT
GTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTG
CTACATTTGAGAACTTTTGAGAGTCAAATCTGCTATGTCCTCGATTTGTCCCTTGTAAACACAAG
AATACCAAACCATCTTGGATCTGCTTCAGTATAAACAACTGAAGGTTAGATCTGCTATATC
Found at i:10279417 original size:119 final size:119
Alignment explanation
Indices: 10279209--10279551 Score: 573
Period size: 119 Copynumber: 2.9 Consensus size: 119
10279199 TTAAGAACAA
*
10279209 TTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
1 TTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
10279274 GGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTACATTTGAGAACT-T
66 GGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTACATTTGAGAA-TGT
*
10279328 TTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAGTCATCTT
1 TTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
* *
10279393 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAATGT
66 GGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTACATTTGAGAATGT
* * *
10279447 CTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAAAACCAAATCATCTT
1 TTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
* *
10279512 GGATCTGCTTCAGCATAAATGTCTGAA-GTCTAGATCTGCT
66 GGATCTGCTTCAGTATAAATATCTGAAGGT-TAGATCTGCT
10279552 GTCTTCAATT
Statistics
Matches: 211, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
118 3 0.01
119 208 0.99
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (119 bp):
TTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
GGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTACATTTGAGAATGT
Found at i:10291794 original size:35 final size:36
Alignment explanation
Indices: 10291755--10291822 Score: 95
Period size: 35 Copynumber: 1.9 Consensus size: 36
10291745 ATGTAATATA
*
10291755 AACATATAAGAAAAATA-ATAGATATA-ATATAAAGT
1 AACATATAA-AAAAATATATACATATATATATAAAGT
*
10291790 AACATATAAAACAATATATACATATATATATAA
1 AACATATAAAAAAATATATACATATATATATAA
10291823 TTAATAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 6 0.21
35 17 0.59
36 6 0.21
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.28
Consensus pattern (36 bp):
AACATATAAAAAAATATATACATATATATATAAAGT
Found at i:10291931 original size:16 final size:16
Alignment explanation
Indices: 10291910--10291948 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
10291900 GATAAGTAGT
10291910 AATAATA-TATAATTAA
1 AATAATACTATAA-TAA
10291926 AATAATACTTATAATAA
1 AATAATAC-TATAATAA
10291943 AATAAT
1 AATAAT
10291949 TTTATAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.33
17 9 0.43
18 5 0.24
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (16 bp):
AATAATACTATAATAA
Found at i:10291955 original size:16 final size:17
Alignment explanation
Indices: 10291871--10291957 Score: 58
Period size: 16 Copynumber: 5.1 Consensus size: 17
10291861 AAAAGAGATG
10291871 TAAAATAATA-TT-TAA
1 TAAAATAATACTTATAA
* *
10291886 GAAAAATAATACATGATAA
1 -TAAAATAATAC-TTATAA
*
10291905 GTAGTAATAATA--TATAA
1 -TA-AAATAATACTTATAA
10291922 TTAAAATAATACTTATAA
1 -TAAAATAATACTTATAA
*
10291940 TAAAATAAT-TTTATAA
1 TAAAATAATACTTATAA
10291956 TA
1 TA
10291958 TATTATATAA
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
16 24 0.42
17 15 0.26
18 6 0.11
19 5 0.09
20 7 0.12
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (17 bp):
TAAAATAATACTTATAA
Found at i:10291983 original size:26 final size:27
Alignment explanation
Indices: 10291909--10291983 Score: 73
Period size: 28 Copynumber: 2.8 Consensus size: 27
10291899 TGATAAGTAG
* *
10291909 TAATAATATATAATTAAAATAATACTTA
1 TAATAAAATAAAATTAAAAT-ATACTTA
** *
10291937 TAATAAAATAATTTTATAATATA-TTA
1 TAATAAAATAAAATTAAAATATACTTA
10291963 T-ATAAAAGTAAAATTAAAATA
1 TAATAAAA-TAAAATTAAAATA
10291984 AAACAAATAA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
25 6 0.16
26 14 0.37
27 3 0.08
28 15 0.39
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (27 bp):
TAATAAAATAAAATTAAAATATACTTA
Found at i:10291997 original size:41 final size:42
Alignment explanation
Indices: 10291909--10292015 Score: 114
Period size: 41 Copynumber: 2.6 Consensus size: 42
10291899 TGATAAGTAG
* * * * *
10291909 TAATAATATATAAT-TAAAATAATACTTATAATAAAATAATT
1 TAATAATATATTATATAAAATAATAATTAAAATAAAACAATA
*
10291950 TTATAATATATTATATAAAAGTAA-AATTAAAATAAAACAA-A
1 TAATAATATATTATATAAAA-TAATAATTAAAATAAAACAATA
*
10291991 TAATAATATA-TATATAGAATAATAA
1 TAATAATATATTATATAAAATAATAA
10292016 ATATAGGACT
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
39 3 0.05
40 10 0.18
41 21 0.38
42 18 0.33
43 3 0.05
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (42 bp):
TAATAATATATTATATAAAATAATAATTAAAATAAAACAATA
Found at i:10294002 original size:817 final size:814
Alignment explanation
Indices: 10292432--10294062 Score: 3068
Period size: 817 Copynumber: 2.0 Consensus size: 814
10292422 TAAAAAAAAA
10292432 CAAAGAAAAATCCTCTGAAGAGGATCCCTGGTCCTCTGAGCTCCGGCGTTTAGCCGATCAGCTCT
1 CAAAGAAAAATCCTCTGAAGAGGATCCCTGGTCCTCTGAGCTCCGGCGTTTAGCCGATCAGCTCT
10292497 GGTCATCGGACCTCCGCGCTGAGATCCACGCGCCGCCACCGACTCCGCCACACACGACGGTCGGA
66 GGTCATCGGACCTCCGCGCTGAGATCCACGCGCCGCCACCGACTCCGCCACACACGACGGTCGGA
* * *
10292562 ACTTGAAAAGTTTCGCTTTTCAAGGTGATTCTCCAGGTATACTCTCTCTATCTATTTAATATATT
131 ACCTGAAAAGCTTCGCTTTTCAAGGTGATTCTCCAGATATACTCTCTCTATCTATTTAATATATT
* *
10292627 ATATGCATAAACTCATGATCAAGAGAATTAAACGCAAATAAAAATATGTCACCTTTGTCTTCTGT
196 ATATGCATAAACTCATGATCAAGAGAATGAAACGAAAATAAAAATATGTCACCTTTGTCTTCTGT
10292692 AAAAGATCACTGGTATATTATTGCAAAAAAACTCTGTGTACAATATTTTTGGTCTCTACCTCGTG
261 AAAAGATCACTGGTATATTATTGCAAAAAAACTCTGTGTACAATATTTTTGGTCTCTACCTCGTG
10292757 TCCATTTTTACAGATTAAAAAGAAGGCTTTATAGCCTCTACTACTACAAGTTTTGGAAAGAAATC
326 TCCATTTTTACAGATTAAAAAGAAGGCTTTATAGCCTCTACTACTACAAGTTTTGGAAAGAAATC
10292822 ATCGATTTCTTTCCGTATTTGCTTCGCATGTTTGCTGTGATTTTCTTTCCTTTTCTTGCAGGTAC
391 ATCGATTTCTTTCCGTATTTGCTTCGCATGTTTGCTGTGATTTTCTTTCCTTTTCTTGCAGGTAC
10292887 TTGCGAAAAATCCGGCAATGACAAAGGCCTGACGATGGTCCACTGGTGGCATTGATCTCGGCGTG
456 TTGCGAAAAATCCGGCAATGACAAAGGCCTGACGATGGTCCACTGGTGGCATTGATCTCGGCGTG
10292952 ACTTGGGGCATGGAATCATGGCCTTGACGGGGTAGCTGGAACAGCAGGAGCTGAAGAGTCATGAG
521 ACTTGGGGCATGGAATCATGGCCTTGACGGGGTAGCTGGAACAGCAGGAGCTGAAGAGTCATGAG
10293017 GCTTGGCTTCTGGATCCTTCTGTTTGCGGCGCAAGGAGAAAGGCAGAAACCCTAGGGTTTCATGC
586 GCTTGGCTTCTGGATCCTTCTGTTTGCGGCGCAAGGAGAAAGGCAGAAACCCTAGGGTTTCATGC
10293082 CTTGGTGTAACAAGCTGGGCCACTTGGGTCCGTTTTGTCCTGGGTCCACTTGGGTCTGTTGAAAT
651 CTTGGTGTAACAAGCTGGGCCACTTGGGTCCGTTTTGTCCTGGGTCCACTTGGGTCTGTTGAAAT
10293147 GGGTCTTAGTTTTAGTGTATCTGGGTAGGATGTAATAGTGGGCCTGCTGGTTATTGTAACTGGGT
716 GGGTCTTAGTTTTAGTGTATCTGGGTAGGATGTAATAGTGGGCCTGCTGGTTATTGTAACTGGGT
10293212 AAGGTCTCTTGTATTTGGGCCTGCCGTTTAGGCT
781 AAGGTCTCTTGTATTTGGGCCTGCCGTTTAGGCT
* *
10293246 CAAAGAAAAATCCTCTGAAGAGGATCCTTGGTCCTCTGAGCTCCGGCGTTTAGCCGATCAGTTCT
1 CAAAGAAAAATCCTCTGAAGAGGATCCCTGGTCCTCTGAGCTCCGGCGTTTAGCCGATCAGCTCT
**
10293311 GGTCATCGGACCTCCGCGCTGAGATCCACGCGCCGCCACCGACTCCGCCACACACGATTGTCGGA
66 GGTCATCGGACCTCCGCGCTGAGATCCACGCGCCGCCACCGACTCCGCCACACACGACGGTCGGA
* *
10293376 TCCTGAAAAGCTTCGTTTTTCAAGGTGATTCTCCAGATATACTCTCTCTATCTATTTAATATATT
131 ACCTGAAAAGCTTCGCTTTTCAAGGTGATTCTCCAGATATACTCTCTCTATCTATTTAATATATT
*
10293441 ATATGCATAAGCTCATGATCAAGAGAATGAAACGAAAATAAAAATATGTCACCTTTGTCTTCTGT
196 ATATGCATAAACTCATGATCAAGAGAATGAAACGAAAATAAAAATATGTCACCTTTGTCTTCTGT
* *
10293506 AAAAGATCTCTGGTATATTATTGCAAAAAAAAAACTCTGTGTACAATATTTTTTGGTCTCTGCCT
261 AAAAGATCACTGGTATATTATTGC---AAAAAAACTCTGTGTACAATA-TTTTTGGTCTCTACCT
10293571 CCGTGT-C-TTTTTACAGATTAAAAAGAAGGCTTTATAGCCTCTACTACTACAAGTTTTGGAAAG
322 -CGTGTCCATTTTTACAGATTAAAAAGAAGGCTTTATAGCCTCTACTACTACAAGTTTTGGAAAG
10293634 AAATCATCGATTTCTTTCCGTATTTGCTTCGCATGTTTGCTGTGATTTTCTTTCCTTTTCTTGCA
386 AAATCATCGATTTCTTTCCGTATTTGCTTCGCATGTTTGCTGTGATTTTCTTTCCTTTTCTTGCA
10293699 GGTACTTGCGAAAAATCCGGCAATGACAAAGGCCTGACGATGGTCCACTGGTGGCATTGATCTCG
451 GGTACTTGCGAAAAATCCGGCAATGACAAAGGCCTGACGATGGTCCACTGGTGGCATTGATCTCG
10293764 GCGTGACTTGGGGCATGGAATCATGGCCTTGACGGGGTAGCTGGAACAGCAGGAGCTGAAGAGTC
516 GCGTGACTTGGGGCATGGAATCATGGCCTTGACGGGGTAGCTGGAACAGCAGGAGCTGAAGAGTC
*
10293829 ATGAGGCTTGGCTTCTGGATCCTTCTGTTTGCGGCGCAAGGAGAGAGGCAGAAACCCTAGGGTTT
581 ATGAGGCTTGGCTTCTGGATCCTTCTGTTTGCGGCGCAAGGAGAAAGGCAGAAACCCTAGGGTTT
10293894 CATGCCTTGGTGTAACAAGCTGGGCCACTTGGGTCCGTTTTGTCCTGGGTCCACTTGGGTCTGTT
646 CATGCCTTGGTGTAACAAGCTGGGCCACTTGGGTCCGTTTTGTCCTGGGTCCACTTGGGTCTGTT
10293959 GAAATGGGTCTTAGTTTTAGTGTATCTGGGTAGGATGTAATAGTGGGCCTGCTGGTTATTGTAAC
711 GAAATGGGTCTTAGTTTTAGTGTATCTGGGTAGGATGTAATAGTGGGCCTGCTGGTTATTGTAAC
10294024 TGGGTAAGGTCTCTTGTATTTGGGCCTGCCGTTTAGGCT
776 TGGGTAAGGTCTCTTGTATTTGGGCCTGCCGTTTAGGCT
10294063 TTTGTATTTG
Statistics
Matches: 797, Mismatches: 15, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
814 271 0.34
817 505 0.63
818 16 0.02
819 5 0.01
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (814 bp):
CAAAGAAAAATCCTCTGAAGAGGATCCCTGGTCCTCTGAGCTCCGGCGTTTAGCCGATCAGCTCT
GGTCATCGGACCTCCGCGCTGAGATCCACGCGCCGCCACCGACTCCGCCACACACGACGGTCGGA
ACCTGAAAAGCTTCGCTTTTCAAGGTGATTCTCCAGATATACTCTCTCTATCTATTTAATATATT
ATATGCATAAACTCATGATCAAGAGAATGAAACGAAAATAAAAATATGTCACCTTTGTCTTCTGT
AAAAGATCACTGGTATATTATTGCAAAAAAACTCTGTGTACAATATTTTTGGTCTCTACCTCGTG
TCCATTTTTACAGATTAAAAAGAAGGCTTTATAGCCTCTACTACTACAAGTTTTGGAAAGAAATC
ATCGATTTCTTTCCGTATTTGCTTCGCATGTTTGCTGTGATTTTCTTTCCTTTTCTTGCAGGTAC
TTGCGAAAAATCCGGCAATGACAAAGGCCTGACGATGGTCCACTGGTGGCATTGATCTCGGCGTG
ACTTGGGGCATGGAATCATGGCCTTGACGGGGTAGCTGGAACAGCAGGAGCTGAAGAGTCATGAG
GCTTGGCTTCTGGATCCTTCTGTTTGCGGCGCAAGGAGAAAGGCAGAAACCCTAGGGTTTCATGC
CTTGGTGTAACAAGCTGGGCCACTTGGGTCCGTTTTGTCCTGGGTCCACTTGGGTCTGTTGAAAT
GGGTCTTAGTTTTAGTGTATCTGGGTAGGATGTAATAGTGGGCCTGCTGGTTATTGTAACTGGGT
AAGGTCTCTTGTATTTGGGCCTGCCGTTTAGGCT
Found at i:10296359 original size:18 final size:19
Alignment explanation
Indices: 10296309--10296360 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
10296299 AATAAAAGAG
*
10296309 TTATTAATTAAAAAGATGAA
1 TTATTAATTAAAAAAAT-AA
** *
10296329 TTAAAAATAAAAAAAAT-A
1 TTATTAATTAAAAAAATAA
10296347 TTATTAATTAAAAA
1 TTATTAATTAAAAA
10296361 TAAAAAAATC
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
18 12 0.48
20 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (19 bp):
TTATTAATTAAAAAAATAA
Found at i:10301506 original size:27 final size:26
Alignment explanation
Indices: 10301468--10301533 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
10301458 TGTAACCTTA
*
10301468 TGTTTAATGTCCTGACAAACTACCCCG
1 TGTTTACTGTCCTGA-AAACTACCCCG
* * *
10301495 TGTTTACTGTCCCAGAAGACTACCTCG
1 TGTTTACTGT-CCTGAAAACTACCCCG
10301522 T-TTTACTGTCCT
1 TGTTTACTGTCCT
10301534 AGTAAACTCC
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
25 2 0.06
26 8 0.24
27 19 0.58
28 4 0.12
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.35
Consensus pattern (26 bp):
TGTTTACTGTCCTGAAAACTACCCCG
Found at i:10301928 original size:35 final size:35
Alignment explanation
Indices: 10301877--10301947 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
10301867 GGTTGTCATA
*
10301877 GTCGTGCTATAGTTTTACACTTTTAAACCTCTTTT
1 GTCGAGCTATAGTTTTACACTTTTAAACCTCTTTT
10301912 GTCGAGCTATAGTTTTACACTTTTAAACCTCTTTT
1 GTCGAGCTATAGTTTTACACTTTTAAACCTCTTTT
10301947 G
1 G
10301948 AAGTGTCTCC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.21, C:0.20, G:0.13, T:0.46
Consensus pattern (35 bp):
GTCGAGCTATAGTTTTACACTTTTAAACCTCTTTT
Found at i:10304296 original size:14 final size:14
Alignment explanation
Indices: 10304277--10304306 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
10304267 AGAAACTTAT
10304277 TTAATTAAAAATAA
1 TTAATTAAAAATAA
*
10304291 TTAATTAAAATTAA
1 TTAATTAAAAATAA
10304305 TT
1 TT
10304307 TGATAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
TTAATTAAAAATAA
Found at i:10306211 original size:19 final size:19
Alignment explanation
Indices: 10306187--10306226 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
10306177 CTAAAAAGCG
10306187 AAAAGCAACAAGCAAA-CAA
1 AAAAGCAACAAG-AAAGCAA
*
10306206 AAAAGCCACAAGAAAGCAA
1 AAAAGCAACAAGAAAGCAA
10306225 AA
1 AA
10306227 TGCACACCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 3 0.16
19 16 0.84
ACGTcount: A:0.68, C:0.20, G:0.12, T:0.00
Consensus pattern (19 bp):
AAAAGCAACAAGAAAGCAA
Found at i:10309354 original size:21 final size:19
Alignment explanation
Indices: 10309330--10309410 Score: 83
Period size: 21 Copynumber: 3.9 Consensus size: 19
10309320 AGGTCCCCAC
10309330 AAATATTATTCTAATTTTTTT
1 AAATATT-TT-TAATTTTTTT
*
10309351 AAAT-TTTTAAATTTTCTTT
1 AAATATTTTTAATTTT-TTT
10309370 ATATATATTTTTAGATTTTTTT
1 A-A-ATATTTTTA-ATTTTTTT
10309392 GAAATATTTTTAATTTTTT
1 -AAATATTTTTAATTTTTT
10309411 AAAAAATATA
Statistics
Matches: 52, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
18 6 0.12
19 6 0.12
20 10 0.19
21 15 0.29
22 9 0.17
23 6 0.12
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (19 bp):
AAATATTTTTAATTTTTTT
Found at i:10309379 original size:23 final size:21
Alignment explanation
Indices: 10309342--10309410 Score: 67
Period size: 23 Copynumber: 3.4 Consensus size: 21
10309332 ATATTATTCT
10309342 AATTTTTTT--AA-ATTTTTA
1 AATTTTTTTGAAATATTTTTA
10309360 AATTTTCTTT-ATATATATTTTTA
1 AATTTT-TTTGA-A-ATATTTTTA
*
10309383 GATTTTTTTGAAATATTTTT-
1 AATTTTTTTGAAATATTTTTA
10309403 AATTTTTT
1 AATTTTTT
10309411 AAAAAATATA
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
18 6 0.14
19 3 0.07
20 7 0.16
21 9 0.21
22 5 0.12
23 13 0.30
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.67
Consensus pattern (21 bp):
AATTTTTTTGAAATATTTTTA
Found at i:10309419 original size:21 final size:21
Alignment explanation
Indices: 10309374--10309415 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
10309364 TTCTTTATAT
**
10309374 ATATTTTTAGATTTTTTTGAA
1 ATATTTTTAGATTTTTTAAAA
10309395 ATATTTTTA-ATTTTTTAAAA
1 ATATTTTTAGATTTTTTAAAA
10309415 A
1 A
10309416 ATATAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (21 bp):
ATATTTTTAGATTTTTTAAAA
Found at i:10309453 original size:19 final size:19
Alignment explanation
Indices: 10309429--10309472 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
10309419 TAAAAATTGA
* *
10309429 AATTTTTATACATATTTTG
1 AATTTTTAAAAATATTTTG
*
10309448 AATTTTAAAAAATATTTTG
1 AATTTTTAAAAATATTTTG
10309467 -ATTTTT
1 AATTTTT
10309473 TTTTAATTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (19 bp):
AATTTTTAAAAATATTTTG
Found at i:10312490 original size:28 final size:28
Alignment explanation
Indices: 10312459--10312514 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
10312449 TTTCTAATTA
* * *
10312459 AATTCAATTTTAATCCTTTTTATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
* *
10312487 AATTTACTTTAAATACTTTATATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
10312515 TTATAAATAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (28 bp):
AATTCAATTTAAATACTTTATATATTTT
Found at i:10312621 original size:12 final size:11
Alignment explanation
Indices: 10312605--10312634 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
10312595 GTATATTTTA
10312605 TTTTATATATT
1 TTTTATATATT
10312616 TCTTTATATATT
1 T-TTTATATATT
10312628 TTTTATA
1 TTTTATA
10312635 AAATTGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTATATATT
Found at i:10313004 original size:18 final size:18
Alignment explanation
Indices: 10312978--10313018 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
10312968 TACCATATTA
*
10312978 TATTTCATACTATATTTT
1 TATTACATACTATATTTT
10312996 TATTACATACTATATTTT
1 TATTACATACTATATTTT
10313014 TATTA
1 TATTA
10313019 TTCAATATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (18 bp):
TATTACATACTATATTTT
Found at i:10313073 original size:22 final size:23
Alignment explanation
Indices: 10313048--10313090 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
10313038 TCTATCTTTC
10313048 TTATATATTTT-TTTATTATATA
1 TTATATATTTTGTTTATTATATA
* *
10313070 TTATTTATTTTGTTTTTTATA
1 TTATATATTTTGTTTATTATA
10313091 CTAATCATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (23 bp):
TTATATATTTTGTTTATTATATA
Found at i:10313141 original size:11 final size:10
Alignment explanation
Indices: 10313126--10313184 Score: 57
Period size: 10 Copynumber: 5.7 Consensus size: 10
10313116 TGCAAAATAC
10313126 TTATTATATT
1 TTATTATATT
10313136 CTTATTAT-TT
1 -TTATTATATT
10313146 TATATTATATT
1 T-TATTATATT
**
10313157 TCCTTATATT
1 TTATTATATT
10313167 TTATTCATATT
1 TTATT-ATATT
*
10313178 ATATTAT
1 TTATTAT
10313185 TATATATAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
9 1 0.03
10 20 0.50
11 19 0.47
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (10 bp):
TTATTATATT
Found at i:10313923 original size:105 final size:103
Alignment explanation
Indices: 10313750--10313943 Score: 273
Period size: 105 Copynumber: 1.9 Consensus size: 103
10313740 GTCAAGCATC
* * *
10313750 CTTCTAAGTTTTTAAGGTTTTCAAAATATGAGCAACTTTCTTGGAACTTCAAAGCGTTGTGTCCT
1 CTTCTAAGTTTTTAAGGTTTTCAAAATATAAGCAACTGTCTTGAAACTTCAAAGCGTTGTGTCCT
10313815 AACTTACTGGATATGGCGTCTTGTCGCTGTTAAGCACT
66 AACTTACTGGATATGGCGTCTTGTCGCTGTTAAGCACT
* * * * *
10313853 CTTCTAAGTTTTTAAGGTTTTTTTAAAGTGTAAGCAACTGTCTCT-AAATTTCAAGGCGTTGTGT
1 CTTCTAAGTTTTTAAGG--TTTTCAAAATATAAGCAACTGTCT-TGAAACTTCAAAGCGTTGTGT
*
10313917 CCTAACTTACTGGATATGGCGTTTTGT
63 CCTAACTTACTGGATATGGCGTCTTGT
10313944 TGTTTCGAGA
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
103 17 0.22
105 61 0.77
106 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (103 bp):
CTTCTAAGTTTTTAAGGTTTTCAAAATATAAGCAACTGTCTTGAAACTTCAAAGCGTTGTGTCCT
AACTTACTGGATATGGCGTCTTGTCGCTGTTAAGCACT
Found at i:10325414 original size:53 final size:53
Alignment explanation
Indices: 10325334--10325434 Score: 202
Period size: 53 Copynumber: 1.9 Consensus size: 53
10325324 TACGATGAAG
10325334 CAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAGATGC
1 CAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAGATGC
10325387 CAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGA
1 CAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGA
10325435 AGTTTGGCGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (53 bp):
CAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAGATGC
Found at i:10325722 original size:186 final size:186
Alignment explanation
Indices: 10325395--10325754 Score: 526
Period size: 186 Copynumber: 1.9 Consensus size: 186
10325385 GCCAAATCTA
** *
10325395 AGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGGCGTCTCCATATTCGACGG
1 AGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCATCTCCATATTCGACGG
* ** * * **
10325460 AGAGTAGATACATAGCAGATCTGGCCTTCAGATGTTTATATTGAAGCAGATCCAAGATGATTTGG
66 AGAGTAGACACATAGCAGATCTAACCTTCAGATGATTAGACCGAAGCAGATCCAAGATGATTTGG
* * *
10325525 CATCTTTGTGTTTACAAGGAGCAAATCGAA-ATCATAGCTGATTTAGCTTTCATGTG
131 CATCCTTGTGTTTACAAGGAACAAATCGAAGA-CATAACTGATTTAGCTTTCATGTG
* *
10325581 AGATGATTTGGCATCTCTGTATTGTTAGAGAACAAATCAAAGTTTGGCATCTCCATATTTGACGG
1 AGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCATCTCCATATTCGACGG
* *
10325646 AGGGCT-GACACATAGCAGATCTAACCTTCAGATGATTAGACCGAAGCAGATCCAAGATGGTTTG
66 AGAG-TAGACACATAGCAGATCTAACCTTCAGATGATTAGACCGAAGCAGATCCAAGATGATTTG
*
10325710 GTATCCTTGTGTTTACAAGGAACAAATCGAAGACATAACTGATTT
130 GCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAACTGATTT
10325755 GGTTTTCGCG
Statistics
Matches: 154, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
186 152 0.99
187 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.31
Consensus pattern (186 bp):
AGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCATCTCCATATTCGACGG
AGAGTAGACACATAGCAGATCTAACCTTCAGATGATTAGACCGAAGCAGATCCAAGATGATTTGG
CATCCTTGTGTTTACAAGGAACAAATCGAAGACATAACTGATTTAGCTTTCATGTG
Found at i:10327481 original size:28 final size:28
Alignment explanation
Indices: 10327450--10327505 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
10327440 TTTCTAATTA
* * *
10327450 AATTCAATTTTAATCCTTTTTATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
* *
10327478 AATTTACTTTAAATACTTTATATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
10327506 TTNTACTAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (28 bp):
AATTCAATTTAAATACTTTATATATTTT
Found at i:10327561 original size:11 final size:10
Alignment explanation
Indices: 10327546--10327604 Score: 57
Period size: 10 Copynumber: 5.7 Consensus size: 10
10327536 TGCAAAATAC
10327546 TTATTATATT
1 TTATTATATT
10327556 CTTATTAT-TT
1 -TTATTATATT
10327566 TATATTATATT
1 T-TATTATATT
**
10327577 TCCTTATATT
1 TTATTATATT
10327587 TTATTCATATT
1 TTATT-ATATT
*
10327598 ATATTAT
1 TTATTAT
10327605 TATATATAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
9 1 0.03
10 20 0.50
11 19 0.47
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (10 bp):
TTATTATATT
Found at i:10330882 original size:20 final size:20
Alignment explanation
Indices: 10330845--10330885 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
10330835 AAATTTCTAA
*
10330845 TCAACAATTGAAAAAAAAAT
1 TCAACAATCGAAAAAAAAAT
10330865 TCAACAATCGCAATAAAAAAA
1 TCAACAATCG-AA-AAAAAAA
10330886 GAATTATCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 2 0.11
22 7 0.39
ACGTcount: A:0.63, C:0.15, G:0.05, T:0.17
Consensus pattern (20 bp):
TCAACAATCGAAAAAAAAAT
Found at i:10333477 original size:16 final size:16
Alignment explanation
Indices: 10333456--10333487 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
10333446 TAACCAAGAA
10333456 AAATTCCTTCATCACT
1 AAATTCCTTCATCACT
*
10333472 AAATTCTTTCATCACT
1 AAATTCCTTCATCACT
10333488 TTTTGATCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (16 bp):
AAATTCCTTCATCACT
Found at i:10333550 original size:32 final size:32
Alignment explanation
Indices: 10333509--10333572 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
10333499 TTTACTAAGG
10333509 TTGTCATTTCCATTATTTAAAAGAAAACATTT
1 TTGTCATTTCCATTATTTAAAAGAAAACATTT
10333541 TTGTCATTTCCATTATTTAAAAGAAAACATTT
1 TTGTCATTTCCATTATTTAAAAGAAAACATTT
10333573 GCACCCAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (32 bp):
TTGTCATTTCCATTATTTAAAAGAAAACATTT
Found at i:10340049 original size:48 final size:48
Alignment explanation
Indices: 10339946--10340165 Score: 213
Period size: 48 Copynumber: 4.6 Consensus size: 48
10339936 ATTTGTGTGC
* *
10339946 TAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCTACG---AGATGTGT
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGTATAGAGGTGT
*
10339990 TAGTGTAAGACCATGTCTGGGACATGGAATCGGCACGTATAGAGGTGT
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGAGGTGT
* * * * *
10340038 TAGTATAAGACCATGCCTGGGACATGGCA-CTGGCACGTATATGTGAGAGA
1 TAGTGTAAGACCATGTCTGGGACATGGCATC-GGCACGTATA-GAG-GTGT
* * * *
10340088 TAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTGATGGAGGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGT-ATAGAGGTGT
* *
10340135 CAGTGTAAGACCATGTCTGTGACATGGCATC
1 TAGTGTAAGACCATGTCTGGGACATGGCATC
10340166 AGCATTATAC
Statistics
Matches: 149, Mismatches: 17, Indels: 17
0.81 0.09 0.09
Matches are distributed among these distances:
44 10 0.07
45 17 0.11
46 6 0.04
47 33 0.22
48 48 0.32
49 5 0.03
50 29 0.19
51 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (48 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGAGGTGT
Found at i:10340152 original size:47 final size:47
Alignment explanation
Indices: 10339990--10340173 Score: 185
Period size: 47 Copynumber: 3.8 Consensus size: 47
10339980 CGAGATGTGT
* * * * *
10339990 TAGTGTAAGACCATGTCTGGGACATGGAATCGGCACGTATAGAGGTGT
1 TAGTGTAAGACCATGTCTGGGACATGGCATC-GCACTTATGGAGGAGA
* * *
10340038 TAGTATAAGACCATGCCTGGGACATGGCACTGGCACGTATATGTGA-GAGA
1 TAGTGTAAGACCATGTCTGGGACATGGCA-TCGCAC-T-TATG-GAGGAGA
*
10340088 TAGTGTAAGACCATGTCTGGGACATGGCATCG-ACTTGATGGAGGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGCACTT-ATGGAGGAGA
* *
10340135 CAGTGTAAGACCATGTCTGTGACATGGCATCAGCA-TTAT
1 TAGTGTAAGACCATGTCTGGGACATGGCATC-GCACTTAT
10340174 ACCCTACATT
Statistics
Matches: 114, Mismatches: 14, Indels: 17
0.79 0.10 0.12
Matches are distributed among these distances:
46 3 0.03
47 38 0.33
48 35 0.31
49 4 0.04
50 32 0.28
51 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.24
Consensus pattern (47 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGCACTTATGGAGGAGA
Found at i:10343516 original size:19 final size:19
Alignment explanation
Indices: 10343479--10343516 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
10343469 ACCTACCAGA
*
10343479 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
10343498 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
10343517 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:10350934 original size:136 final size:135
Alignment explanation
Indices: 10350675--10350935 Score: 317
Period size: 136 Copynumber: 1.9 Consensus size: 135
10350665 TGACACTACA
* * * * * *
10350675 TGGGCGTGTTGTCGCCCGTGTGGTAGGCCGTGTGCAAGAACATGGCCGTGTGGTCGACAAAGGCA
1 TGGGCGTGTGGTCACCCGTGTGGTAGGCCATGTGCAAGAACACGGCCATATGGTCGACAAAGGCA
* * * * **
10350740 TGGTCGTGCACAGCATACAGCTGTATGGTGGCTCGAGTGTGGCCTTGTGGGCTGCACGGGCAAGA
66 TGGCCGTCCACAGCATACACCTG-ATGGTGGCTCGAGTGTGGCCGTGTGGGCCACACGGGCAAGA
10350805 CCAATC
130 CCAATC
* ** * *
10350811 TGGGTGTGTGGTCACCCGTGTGGTAGGCCATGTGTGAGAACACGGTCATATGGTCGACGAAGGCA
1 TGGGCGTGTGGTCACCCGTGTGGTAGGCCATGTGCAAGAACACGGCCATATGGTCGACAAAGGCA
* *
10350876 TGGCCGTCCACGGCATATGACCATG-TGGTGGCTCGAGTGTGGCCGTGTGGGCCACACGGG
66 TGGCCGTCCACAGCATA-CACC-TGATGGTGGCTCGAGTGTGGCCGTGTGGGCCACACGGG
10350936 TGTGTGGGCC
Statistics
Matches: 104, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
136 100 0.96
137 2 0.02
138 2 0.02
ACGTcount: A:0.17, C:0.23, G:0.38, T:0.22
Consensus pattern (135 bp):
TGGGCGTGTGGTCACCCGTGTGGTAGGCCATGTGCAAGAACACGGCCATATGGTCGACAAAGGCA
TGGCCGTCCACAGCATACACCTGATGGTGGCTCGAGTGTGGCCGTGTGGGCCACACGGGCAAGAC
CAATC
Found at i:10375473 original size:46 final size:44
Alignment explanation
Indices: 10375388--10375510 Score: 158
Period size: 46 Copynumber: 2.7 Consensus size: 44
10375378 ATGTATCCGT
* * *
10375388 GCCGATGCCATGTCCCAAACATGGTCTTATACTGATACATCATGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGATACATCAAG-AG
*
10375434 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCAAGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACT-G-ATACATCAAGAG
10375480 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
10375511 AGCACACAAA
Statistics
Matches: 70, Mismatches: 4, Indels: 6
0.88 0.05 0.08
Matches are distributed among these distances:
44 9 0.13
45 15 0.21
46 46 0.66
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGATACATCAAGAG
Found at i:10379191 original size:22 final size:22
Alignment explanation
Indices: 10379163--10379225 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
10379153 TCGAATTGGT
10379163 CACACGGGGGTGTTGCCCCTAC
1 CACACGGGGGTGTTGCCCCTAC
* *
10379185 CACACGGGGGTGTTGCCACTTC
1 CACACGGGGGTGTTGCCCCTAC
* *
10379207 CACATGGGCGTG-TGCCCCT
1 CACACGGGGGTGTTGCCCCT
10379226 GTGTCTAGTG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
21 6 0.17
22 30 0.83
ACGTcount: A:0.13, C:0.35, G:0.32, T:0.21
Consensus pattern (22 bp):
CACACGGGGGTGTTGCCCCTAC
Found at i:10388104 original size:16 final size:16
Alignment explanation
Indices: 10388083--10388113 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
10388073 AGAAAAATTG
10388083 CTCCCCAAAATCCTCT
1 CTCCCCAAAATCCTCT
10388099 CTCCCCAAAATCCTC
1 CTCCCCAAAATCCTC
10388114 ATCCCATTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.52, G:0.00, T:0.23
Consensus pattern (16 bp):
CTCCCCAAAATCCTCT
Found at i:10391528 original size:143 final size:143
Alignment explanation
Indices: 10391269--10391556 Score: 443
Period size: 143 Copynumber: 2.0 Consensus size: 143
10391259 AGTGAGATCT
* * * *
10391269 TTACAATTTCTAGAGTAAAAAACATAAGAATGTAAAAAAGATGAAACAGAAAGTAAGCTAGAAAA
1 TTACAATTTCTAGAGTAAAAAACATAAAAAGGTAAAAAAGATGAAACAAAAAATAAGCTAGAAAA
* * * *
10391334 GAAGTGAATCGACTAGGGTAAAATGTAAGGGGAAATATAGCAGTGATGTGGGGGAGAAGATTAAC
66 GAAGTGAATCGACTAGGGTAAAATGTAAGAGAAAATATAACAGTGACGTGGGGGAGAAGATTAAC
10391399 CTGAAATTGTGCC
131 CTGAAATTGTGCC
* * *
10391412 TTACAATTTCT-GAAGTAAAAAACATAAAAAGGTGAAGAAGATGAAACAAAAAATAAGTTAGAAA
1 TTACAATTTCTAG-AGTAAAAAACATAAAAAGGTAAAAAAGATGAAACAAAAAATAAGCTAGAAA
* *
10391476 AGAAGTGAATCGACTAGGGTAAAATGTGAGAGAAAATATAACAGTGACGTGGGGGATAAGATTAA
65 AGAAGTGAATCGACTAGGGTAAAATGTAAGAGAAAATATAACAGTGACGTGGGGGAGAAGATTAA
10391541 CCTGAAATTGTGCC
130 CCTGAAATTGTGCC
10391555 TT
1 TT
10391557 GACACAGAAA
Statistics
Matches: 131, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
142 1 0.01
143 130 0.99
ACGTcount: A:0.46, C:0.08, G:0.24, T:0.22
Consensus pattern (143 bp):
TTACAATTTCTAGAGTAAAAAACATAAAAAGGTAAAAAAGATGAAACAAAAAATAAGCTAGAAAA
GAAGTGAATCGACTAGGGTAAAATGTAAGAGAAAATATAACAGTGACGTGGGGGAGAAGATTAAC
CTGAAATTGTGCC
Found at i:10393412 original size:16 final size:17
Alignment explanation
Indices: 10393388--10393427 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
10393378 ATATATAAAT
* *
10393388 AAAGTAAAAGAA-ATAA
1 AAAGAAAAAGAATAGAA
10393404 AAAGAAAAAGAATAGAA
1 AAAGAAAAAGAATAGAA
10393421 AAAGAAA
1 AAAGAAA
10393428 GAAAGGATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (17 bp):
AAAGAAAAAGAATAGAA
Found at i:10393422 original size:11 final size:10
Alignment explanation
Indices: 10393394--10393431 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
10393384 AAATAAAGTA
10393394 AAAGAAATAA-
1 AAAGAAA-AAG
10393404 AAAGAAAAAG
1 AAAGAAAAAG
10393414 AATAGAAAAAG
1 AA-AGAAAAAG
10393425 AAAGAAA
1 AAAGAAA
10393432 GGATGAAACG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 2 0.08
10 14 0.54
11 10 0.38
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (10 bp):
AAAGAAAAAG
Found at i:10394899 original size:32 final size:32
Alignment explanation
Indices: 10394857--10394918 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
10394847 CAATATGTAA
10394857 GAGAATAATATCTAGAAATAAGGATTAAATAT
1 GAGAATAATATCTAGAAATAAGGATTAAATAT
*
10394889 GAGACTAATATCTAGAAATAAGGATTAAAT
1 GAGAATAATATCTAGAAATAAGGATTAAAT
10394919 TGCAAGAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.52, C:0.05, G:0.16, T:0.27
Consensus pattern (32 bp):
GAGAATAATATCTAGAAATAAGGATTAAATAT
Found at i:10395712 original size:46 final size:46
Alignment explanation
Indices: 10395613--10395737 Score: 153
Period size: 46 Copynumber: 2.6 Consensus size: 46
10395603 GCTCTCTAAT
* * * *
10395613 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACATGAC
10395659 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACATGAC
*
10395705 A-GAAAATGAATGAGTAAGACCATAGTTGAAAGA
1 ATG-AAATG--T--GTAAGACCATGGTTGAAAGA
10395738 CACTATGGCA
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
45 1 0.01
46 48 0.70
48 1 0.01
50 19 0.28
ACGTcount: A:0.42, C:0.12, G:0.25, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACATGAC
Found at i:10407241 original size:41 final size:41
Alignment explanation
Indices: 10407184--10407266 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
10407174 CTGATCAGCA
10407184 GCCTTATCCACCTTTTTATCATGCTGCTAAGAAGAGTTTCG
1 GCCTTATCCACCTTTTTATCATGCTGCTAAGAAGAGTTTCG
10407225 GCCTTATCCACCTTTTTATCATGCTGCTAAGAAGAGTTTCG
1 GCCTTATCCACCTTTTTATCATGCTGCTAAGAAGAGTTTCG
10407266 G
1 G
10407267 TCCAACTCTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (41 bp):
GCCTTATCCACCTTTTTATCATGCTGCTAAGAAGAGTTTCG
Found at i:10408620 original size:18 final size:18
Alignment explanation
Indices: 10408596--10408638 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
10408586 TCAAGAGGGA
10408596 CGAGGAATCGACCTTGAC
1 CGAGGAATCGACCTTGAC
* **
10408614 TGAGGAATCGAGTTTGAC
1 CGAGGAATCGACCTTGAC
10408632 CGAGGAA
1 CGAGGAA
10408639 AAGGCAAGGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.30, C:0.19, G:0.33, T:0.19
Consensus pattern (18 bp):
CGAGGAATCGACCTTGAC
Found at i:10408963 original size:48 final size:48
Alignment explanation
Indices: 10408892--10409259 Score: 504
Period size: 48 Copynumber: 7.7 Consensus size: 48
10408882 ATGAGATCCC
* * *
10408892 GTGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTAAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGAGCCA
* *
10408940 GTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGTGAGACA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGAGCCA
* * * * * *
10408988 ATGTAAGACCATATCTGGGACATGGCATCAGCGTTGATATGTAAG-AA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGAGCCA
*
10409035 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGAGCCA
* * * *
10409083 GTGTAAGACCATGTTTAGGACATGGCATCGACATTTATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGAGCCA
* *
10409131 GTGTAAGACCATGTCTGGGATATGGCATCGGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGAGCCA
* * * * * * *
10409179 GAGTAAGACCATGTTTGGGACATTGCATTGGCGTTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGAGCCA
10409227 GTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCA
10409260 CTGACGTGAG
Statistics
Matches: 279, Mismatches: 40, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
47 42 0.15
48 237 0.85
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGAGCCA
Found at i:10409150 original size:143 final size:144
Alignment explanation
Indices: 10408892--10409256 Score: 552
Period size: 143 Copynumber: 2.5 Consensus size: 144
10408882 ATGAGATCCC
* *
10408892 GTGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTAAGCTAGTGTAAGACCATGTTTG
1 GTGTAAGACCATGTCTGGGACATGGCATTGGCGTTGATATGTGAGCTAGTGTAAGACCATGTTTG
*
10408957 GGACATGGCATCGGCATTGATATGTGAGACAATGTAAGACCATATCTGGGACATGGCATCAGCGT
66 GGACATGGCATCGACATTGATATGTGAGACAATGTAAGACCATATCTGGGACATGGCATCAGCGT
10409022 TGATATGTAAG-AA
131 TGATATGTAAGCAA
* * *
10409035 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAAGACCATGTTTA
1 GTGTAAGACCATGTCTGGGACATGGCATTGGCGTTGATATGTGAGCTAGTGTAAGACCATGTTTG
* * * * * *
10409100 GGACATGGCATCGACATTTATATGTGAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCGT
66 GGACATGGCATCGACATTGATATGTGAGACAATGTAAGACCATATCTGGGACATGGCATCAGCGT
* *
10409165 TGATATGTGAGCCA
131 TGATATGTAAGCAA
* * * * *
10409179 GAGTAAGACCATGTTTGGGACATTGCATTGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTGGGACATGGCATTGGCGTTGATATGTGAGCTAGTGTAAGACCATGTTTG
10409244 GGACATGGCATCG
66 GGACATGGCATCG
10409257 GCACTGACGT
Statistics
Matches: 199, Mismatches: 22, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
143 128 0.64
144 71 0.36
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (144 bp):
GTGTAAGACCATGTCTGGGACATGGCATTGGCGTTGATATGTGAGCTAGTGTAAGACCATGTTTG
GGACATGGCATCGACATTGATATGTGAGACAATGTAAGACCATATCTGGGACATGGCATCAGCGT
TGATATGTAAGCAA
Found at i:10416378 original size:57 final size:57
Alignment explanation
Indices: 10416288--10416402 Score: 221
Period size: 57 Copynumber: 2.0 Consensus size: 57
10416278 ACTTTTATTA
*
10416288 GGTGGTTTTTGGTGAAATTGATAAAAAGGACTTAATTGTAAAAGTTGTAAAAACTAT
1 GGTGGTTTTTGGTGAAATTGATAAAAAGAACTTAATTGTAAAAGTTGTAAAAACTAT
10416345 GGTGGTTTTTGGTGAAATTGATAAAAAGAACTTAATTGTAAAAGTTGTAAAAACTAT
1 GGTGGTTTTTGGTGAAATTGATAAAAAGAACTTAATTGTAAAAGTTGTAAAAACTAT
10416402 G
1 G
10416403 TGTAAATGTG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.39, C:0.03, G:0.23, T:0.35
Consensus pattern (57 bp):
GGTGGTTTTTGGTGAAATTGATAAAAAGAACTTAATTGTAAAAGTTGTAAAAACTAT
Found at i:10417001 original size:48 final size:48
Alignment explanation
Indices: 10416917--10417137 Score: 300
Period size: 48 Copynumber: 4.6 Consensus size: 48
10416907 TGAGATCCCG
* * *
10416917 TGTAAGACCATGTCTGGGACATGGAATCGGCATTGATACGTGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAA
* * *
10416965 TATAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAA
* * **
10417013 TGTAAGACCATGTCTGGGATATAGCATCGATGTTGATATGTGAGCCAGA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA-A
* ** *
10417062 -GTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGGTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAA
10417109 TGTAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
10417138 ACACTGACAT
Statistics
Matches: 150, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
48 150 1.00
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAA
Found at i:10417163 original size:48 final size:48
Alignment explanation
Indices: 10416919--10417172 Score: 133
Period size: 48 Copynumber: 5.3 Consensus size: 48
10416909 AGATCCCGTG
* * * * * *
10416919 TAAGACCATGTCTGGGACATGGAATCGGCATTGATACGTGAG-C-CAATA
1 TAAGACCATGTCTGGGACATGGCATCGACACTG--ACATGAGACGTAGTA
** * * * *
10416967 TAAGACCATGTCTGGGACATGGCATC-AGCGTTGATATGTGA-GCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGA-CACTGACATGAGACG-TAGTA
* * *** * * *
10417015 TAAGACCATGTCTGGGATATAGCATCGATGTTGATATGTGA-GCCAG-A
1 TAAGACCATGTCTGGGACATGGCATCGACACTGACATGAGACG-TAGTA
* ** * * ** *
10417062 GTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGGTAGTG
1 -TAAGACCATGTCTGGGACATGGCATCGACACTGACATGAGACGTAGTA
* *
10417111 TAAGACCATGTCTGGGACATGGCATCGACACTGACATGAGACTTCGTA
1 TAAGACCATGTCTGGGACATGGCATCGACACTGACATGAGACGTAGTA
*
10417159 TAAGACCATATCTG
1 TAAGACCATGTCTG
10417173 AGATATGACA
Statistics
Matches: 168, Mismatches: 30, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
46 4 0.02
48 162 0.96
49 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGACACTGACATGAGACGTAGTA
Found at i:10417163 original size:96 final size:95
Alignment explanation
Indices: 10416916--10417222 Score: 301
Period size: 96 Copynumber: 3.3 Consensus size: 95
10416906 ATGAGATCCC
* * * *
10416916 GTGTAAGACCATGTCTGGGACATGGAATCGGCATTGATACGTGAG-CCAATATAAGACCATGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGACATTG--ACATGAGACCAGTATAAGACCATGTCT
10416980 GGGACATGGCATCAGCGTTGATATGTGAGCCA
64 GGGACATGGCATCAGCGTTGATATGTGAGCCA
* * ** * *
10417012 GTGTAAGACCATGTCTGGGATATAGCATCGATGTTGATATGTGAGCCAG-AGTAAGACCATGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGACATGAGA-CCAGTA-TAAGACCATGTCT
* * **
10417076 GGGACATGGCATCGGCGTTGATATGTGTGGTA
64 GGGACATGGCATCAGCGTTGATATGTGAGCCA
* *
10417108 GTGTAAGACCATGTCTGGGACATGGCATCGACACTGACATGAGACTTC-GTATAAGACCATATCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGACATGAGAC--CAGTATAAGACCATGTCT
* * *
10417172 GAGATAT-G-A-CA---TTGATATGTGGATCCA
64 GGGACATGGCATCAGCGTTGATATGT-GAGCCA
*
10417199 -TGTAAGACAATGTCTGGGACATGG
1 GTGTAAGACCATGTCTGGGACATGG
10417223 ATTTGGCACA
Statistics
Matches: 174, Mismatches: 30, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
90 32 0.18
91 2 0.01
93 1 0.01
94 5 0.03
95 3 0.02
96 129 0.74
97 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (95 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACATTGACATGAGACCAGTATAAGACCATGTCTGG
GACATGGCATCAGCGTTGATATGTGAGCCA
Found at i:10417178 original size:144 final size:138
Alignment explanation
Indices: 10416918--10417223 Score: 332
Period size: 144 Copynumber: 2.2 Consensus size: 138
10416908 GAGATCCCGT
10416918 GTAAGACCATGTCTGGGACATGGAATCGGCATTGATACGTGAGCCAATATAAGACCATGTCTGGG
1 GTAAGACCATGTCTGGGACATGGAATCGGCATTGATACGTGAGCCAATATAAGACCATGTCTGGG
** * * * * *
10416983 ACATGGCATCAGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTGGGATATAGCATCGATGTTG
66 ACATGGCATCAGCACTGACATGAGAGCCAGTATAAGACCATATCTGAGATAT-G-A-C-A--TTG
10417048 ATATGT-GAGCCAGA
125 ATATGTGGAGCCA-A
* * * * ** * *
10417062 GTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGGTAGTGTAAGACCATGTCTGGG
1 GTAAGACCATGTCTGGGACATGGAATCGGCATTGATACGTGAGCCAATATAAGACCATGTCTGGG
10417127 ACATGGCATC-GACACTGACATGAGA-CTTC-GTATAAGACCATATCTGAGATATGACATTGATA
66 ACATGGCATCAG-CACTGACATGAGAGC--CAGTATAAGACCATATCTGAGATATGACATTGATA
* *
10417189 TGTGGATCCAT
128 TGTGGAGCCAA
*
10417200 GTAAGACAATGTCTGGGACATGGA
1 GTAAGACCATGTCTGGGACATGGA
10417224 TTTGGCACAC
Statistics
Matches: 139, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
138 31 0.22
139 5 0.04
140 1 0.01
141 1 0.01
142 1 0.01
143 3 0.02
144 96 0.69
145 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (138 bp):
GTAAGACCATGTCTGGGACATGGAATCGGCATTGATACGTGAGCCAATATAAGACCATGTCTGGG
ACATGGCATCAGCACTGACATGAGAGCCAGTATAAGACCATATCTGAGATATGACATTGATATGT
GGAGCCAA
Found at i:10427478 original size:15 final size:16
Alignment explanation
Indices: 10427458--10427487 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10427448 CATTGCCATG
10427458 TTATA-TTTTTATGTA
1 TTATATTTTTTATGTA
10427473 TTATATTTTTTATGT
1 TTATATTTTTTATGT
10427488 TATGTACATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (16 bp):
TTATATTTTTTATGTA
Found at i:10438809 original size:39 final size:39
Alignment explanation
Indices: 10438766--10438843 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 39
10438756 ATGCTTGAAG
*
10438766 AAAAAGAAA-ATCAAGATGAAAACCTAAAAAGGGCATCTT
1 AAAAA-AAAGATCAAGATGAAAACCCAAAAAGGGCATCTT
* * *
10438805 AAAAAAAAGATCAAGGTGAAAACCCGAAAAGGGCGTCTT
1 AAAAAAAAGATCAAGATGAAAACCCAAAAAGGGCATCTT
10438844 GATTAACACA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 3 0.09
39 31 0.91
ACGTcount: A:0.53, C:0.14, G:0.19, T:0.14
Consensus pattern (39 bp):
AAAAAAAAGATCAAGATGAAAACCCAAAAAGGGCATCTT
Found at i:10439833 original size:87 final size:88
Alignment explanation
Indices: 10439661--10439990 Score: 402
Period size: 89 Copynumber: 3.7 Consensus size: 88
10439651 TTTCAGAAAT
* * * * * *
10439661 CAACTCATATTGCAAGAGGTGAGTTGAACCT-TGGCTCGCATGCCGAGGTATTTTCAATTTCTGT
1 CAACTCATATTGCGAGAAGTGAGTTGAACCTCAGG---GCACGCCGAGGTATCTTCAAATTCTGT
* * * *
10439725 TTCTCAATTCTAT-TTT---CAAAAAT
63 TTTTTAATT-TATATTTAAAAAAAAAG
*
10439748 CAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGGCACGCTGAGGTATCTTCAAATTCTGTTTT
1 CAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGGCACGCCGAGGTATCTTCAAATTCTGTTTT
10439813 TTAATTTATATTTAAAAAAAAAAG
66 TTAATTTATATTT-AAAAAAAAAG
*
10439837 CAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGGCACGCTGAGGTATCTTCAAATTCTGTTTT
1 CAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGGCACGCCGAGGTATCTTCAAATTCTGTTTT
10439902 TTAATTTATATTTAAAAAAAAAAG
66 TTAATTTATATTT-AAAAAAAAAG
* * *
10439926 CAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGTCACATGCCGAGGTATTTTCAAATTCTGT
1 CAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGG-CAC--GCCGAGGTATCTTCAAATTCTGT
10439990 T
63 T
10439991 GTTCAAATTC
Statistics
Matches: 219, Mismatches: 15, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
84 3 0.01
85 33 0.15
87 29 0.13
88 5 0.02
89 127 0.58
91 22 0.10
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.33
Consensus pattern (88 bp):
CAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGGCACGCCGAGGTATCTTCAAATTCTGTTTT
TTAATTTATATTTAAAAAAAAAG
Found at i:10439856 original size:89 final size:89
Alignment explanation
Indices: 10439742--10439990 Score: 419
Period size: 89 Copynumber: 2.8 Consensus size: 89
10439732 TTCTATTTTC
*
10439742 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGGCACGCTGAGGTATCTTCAAATTC
1 AAAAAGCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGGCACGCTGAGGTATCTTCAAATTC
10439807 TGTTTTTTAATTTATATTTAAAAA
66 TGTTTTTTAATTTATATTTAAAAA
10439831 AAAAAGCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGGCACGCTGAGGTATCTTCAAATTC
1 AAAAAGCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGGCACGCTGAGGTATCTTCAAATTC
10439896 TGTTTTTTAATTTATATTTAAAAA
66 TGTTTTTTAATTTATATTTAAAAA
* * * *
10439920 AAAAAGCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGTCACATGCCGAGGTATTTTCAAA
1 AAAAAGCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGG-CAC--GCTGAGGTATCTTCAAA
10439984 TTCTGTT
63 TTCTGTT
10439991 GTTCAAATTC
Statistics
Matches: 152, Mismatches: 5, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
88 3 0.02
89 127 0.84
91 22 0.14
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.32
Consensus pattern (89 bp):
AAAAAGCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGGCACGCTGAGGTATCTTCAAATTC
TGTTTTTTAATTTATATTTAAAAA
Found at i:10440096 original size:14 final size:14
Alignment explanation
Indices: 10440077--10440110 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
10440067 ACTGAGATAA
*
10440077 TTTCAATTTCTATT
1 TTTCAATTTCTACT
10440091 TTTCAATTTCTACT
1 TTTCAATTTCTACT
10440105 TTTCAA
1 TTTCAA
10440111 AAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.24, C:0.18, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTCAATTTCTACT
Found at i:10440137 original size:87 final size:87
Alignment explanation
Indices: 10439992--10440183 Score: 307
Period size: 87 Copynumber: 2.2 Consensus size: 87
10439982 AATTCTGTTG
* *
10439992 TTCAAATTCTATTTTT-AATTCCTACTTTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTCAATTTCTATTTTTCAATTCCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
10440056 CCTCA-AGACACACTGAGATAAT
66 CCTCAGA-ACACACTGAGATAAT
*
10440078 TTCAATTTCTATTTTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTCAATTTCTATTTTTCAATTCCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* *
10440143 CCTCAGAACACGCTGAGGTAAT
66 CCTCAGAACACACTGAGATAAT
*
10440165 TTCAATTTCTATGTTTCAA
1 TTCAATTTCTATTTTTCAA
10440184 AAATCAACTC
Statistics
Matches: 98, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
86 15 0.15
87 82 0.84
88 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (87 bp):
TTCAATTTCTATTTTTCAATTCCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CCTCAGAACACACTGAGATAAT
Found at i:10440210 original size:73 final size:73
Alignment explanation
Indices: 10440091--10440360 Score: 443
Period size: 73 Copynumber: 3.7 Consensus size: 73
10440081 AATTTCTATT
10440091 TTTCAATTTCTACT-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACG
1 TTTCAATTTCTA-TGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACG
10440155 CTGAGGTAA
65 CTGAGGTAA
10440164 TTTCAATTTCTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGC
1 TTTCAATTTCTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGC
10440229 TGAGGTAA
66 TGAGGTAA
* * **
10440237 TTTCAATTTCTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCGGGGCACGC
1 TTTCAATTTCTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGC
*
10440302 TGAGGTAT
66 TGAGGTAA
* * * *
10440310 TTTCAAATTCTATTTTTCAAAAATCAATTCATATTGTGAGAGGTGAGTTGA
1 TTTCAATTTCTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
10440361 ACCTTGGTTC
Statistics
Matches: 186, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
72 1 0.01
73 185 0.99
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.33
Consensus pattern (73 bp):
TTTCAATTTCTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGC
TGAGGTAA
Found at i:10440355 original size:146 final size:149
Alignment explanation
Indices: 10440090--10440529 Score: 546
Period size: 146 Copynumber: 2.9 Consensus size: 149
10440080 CAATTTCTAT
* **
10440090 TTTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACG
1 TTTTCAATTTCTA-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
* * * *
10440155 CTGAGGTAATTTCAATTTCTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
65 CTGAGGTATTTTCAAATTCTATTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC
10440220 AGAACACG-CTGAGG-T-AA
130 AGAACACGACTGAGGTTCAA
*
10440237 -TTTCAATTTCTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCGGGGCACG
1 TTTTCAATTTCTAT-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
* * *
10440301 CTGAGGTATTTTCAAATTCTATTTTTCAAAAATCAATTCATATTGTGAGAGGTGAGTTGAACCTT
65 CTGAGGTATTTTCAAATTCTATTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC
* **
10440366 GGTTCACGTACTGAGGTATTTTCAA
130 AGAACACG-ACTGAGG----TTCAA
* * *
10440391 TTTCTGTTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGATGTGAGTTGAACCTC
1 --------TTTTCAATTTCTA-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
10440456 GGGGCACGCTGAGGTATTTTCAAATTCTATTTTTCAAAAAATCAACTCATATTGTGAGAGGTGAG
57 GGGGCACGCTGAGGTATTTTCAAATTCTATTTTTC-AAAAATCAACTCATATTGTGAGAGGTGAG
10440521 TTGAGCCTC
121 TTGAGCCTC
10440530 GGGTTACATG
Statistics
Matches: 252, Mismatches: 21, Indels: 23
0.85 0.07 0.08
Matches are distributed among these distances:
145 1 0.00
146 121 0.48
148 6 0.02
153 1 0.00
154 2 0.01
163 85 0.34
164 36 0.14
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.35
Consensus pattern (149 bp):
TTTTCAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
TGAGGTATTTTCAAATTCTATTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCA
GAACACGACTGAGGTTCAA
Found at i:10440675 original size:19 final size:19
Alignment explanation
Indices: 10440651--10440689 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
10440641 TATTTTCAAA
10440651 AGTCAACTCATATTGCGAG
1 AGTCAACTCATATTGCGAG
*
10440670 AGTCAATTCATATTGCGAG
1 AGTCAACTCATATTGCGAG
10440689 A
1 A
10440690 AATGAGTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (19 bp):
AGTCAACTCATATTGCGAG
Found at i:10443041 original size:106 final size:106
Alignment explanation
Indices: 10442924--10443138 Score: 412
Period size: 106 Copynumber: 2.0 Consensus size: 106
10442914 ATTTATATTA
* *
10442924 ATAGTTGTTTTTTTCTTAACATTATTATTTCTAATAGGTGTATACTATGTAAGTATTTTAGCACG
1 ATAGTTGTTTTTTTCTTAACATTATTATTTCTAAGAGGCGTATACTATGTAAGTATTTTAGCACG
10442989 ATAATATATACCCATGTTTTTATAATATATGTATAAATCAT
66 ATAATATATACCCATGTTTTTATAATATATGTATAAATCAT
10443030 ATAGTTGTTTTTTTCTTAACATTATTATTTCTAAGAGGCGTATACTATGTAAGTATTTTAGCACG
1 ATAGTTGTTTTTTTCTTAACATTATTATTTCTAAGAGGCGTATACTATGTAAGTATTTTAGCACG
10443095 ATAATATATACCCATGTTTTTATAATATATGTATAAATCAT
66 ATAATATATACCCATGTTTTTATAATATATGTATAAATCAT
10443136 ATA
1 ATA
10443139 TATGTATCTT
Statistics
Matches: 107, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
106 107 1.00
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.46
Consensus pattern (106 bp):
ATAGTTGTTTTTTTCTTAACATTATTATTTCTAAGAGGCGTATACTATGTAAGTATTTTAGCACG
ATAATATATACCCATGTTTTTATAATATATGTATAAATCAT
Found at i:10443506 original size:15 final size:16
Alignment explanation
Indices: 10443486--10443515 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10443476 CATTGCCATG
10443486 TTATA-TTTTTATGTA
1 TTATATTTTTTATGTA
10443501 TTATATTTTTTATGT
1 TTATATTTTTTATGT
10443516 TATGTACATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (16 bp):
TTATATTTTTTATGTA
Found at i:10443723 original size:42 final size:43
Alignment explanation
Indices: 10443659--10443756 Score: 162
Period size: 42 Copynumber: 2.3 Consensus size: 43
10443649 TACTATTTAC
* *
10443659 ATATATATATTTTGGCGTACATATTCTTAATATTATTATTATT
1 ATATATATATATTGGCGTACATATTCTTAATATCATTATTATT
10443702 ATATATA-ATATTGGCGTACATATTCTTAATATCATTATTATT
1 ATATATATATATTGGCGTACATATTCTTAATATCATTATTATT
*
10443744 ATATATATTTATT
1 ATATATATATATT
10443757 CATTGTTTCC
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
42 40 0.78
43 11 0.22
ACGTcount: A:0.35, C:0.07, G:0.06, T:0.52
Consensus pattern (43 bp):
ATATATATATATTGGCGTACATATTCTTAATATCATTATTATT
Found at i:10454881 original size:39 final size:39
Alignment explanation
Indices: 10454838--10454915 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 39
10454828 ATGCTTGAAG
*
10454838 AAAAAGAAA-ATCAAGATGAAAACCTAAAAAGGGCATCTT
1 AAAAA-AAAGATCAAGATGAAAACCCAAAAAGGGCATCTT
* * *
10454877 AAAAAAAAGATCAAGGTGAAAACCCGAAAAGGGCGTCTT
1 AAAAAAAAGATCAAGATGAAAACCCAAAAAGGGCATCTT
10454916 GATTAACACA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 3 0.09
39 31 0.91
ACGTcount: A:0.53, C:0.14, G:0.19, T:0.14
Consensus pattern (39 bp):
AAAAAAAAGATCAAGATGAAAACCCAAAAAGGGCATCTT
Found at i:10455905 original size:87 final size:85
Alignment explanation
Indices: 10455729--10455989 Score: 276
Period size: 89 Copynumber: 3.0 Consensus size: 85
10455719 TTTCTTTCAG
* * * *
10455729 AAATCAACTCATATTGCAAGAGGTGAGTTGAACCTTGGCTCGCATGCCGAGGTATTTTCAATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGG---GCACGCCGAGGTATTTTCAAATTC
*
10455794 TGTTTCTCAATTCTATTTT-CAA
63 TGTTTCTCAATTCTATTTTAAAA
* * *
10455816 AAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGGCACGCTGAGGTATCTTCAAATTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAACCTC-GGGCACGCCGAGGTATTTTCAAATTCTG
* *
10455881 TTTTTTAATT-TATATTTAAAAAAA
65 TTTCTCAATTCTAT-TTT---AAAA
* *
10455905 AAAGCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAATTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGGG-CAC--GCCGAGGTATTTTCAAATTC
10455970 TGTTGT-TCAAATTCTATTTT
63 TGTT-TCTC-AATTCTATTTT
10455990 TAATTCCTAC
Statistics
Matches: 146, Mismatches: 16, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
84 3 0.02
85 33 0.23
87 33 0.23
88 5 0.03
89 38 0.26
91 23 0.16
92 8 0.05
93 3 0.02
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (85 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGGGCACGCCGAGGTATTTTCAAATTCTGT
TTCTCAATTCTATTTTAAAA
Found at i:10456079 original size:14 final size:14
Alignment explanation
Indices: 10456060--10456093 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
10456050 ACTGAGATAA
*
10456060 TTTCAATTTCTATT
1 TTTCAATTTCTACT
10456074 TTTCAATTTCTACT
1 TTTCAATTTCTACT
10456088 TTTCAA
1 TTTCAA
10456094 AAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.24, C:0.18, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTCAATTTCTACT
Found at i:10456120 original size:87 final size:87
Alignment explanation
Indices: 10455975--10456253 Score: 463
Period size: 87 Copynumber: 3.2 Consensus size: 87
10455965 AATTCTGTTG
* * * * *
10455975 TTCAAATTCTATTTTT-AATTCCTACTTTTCCAAAATCAACTCTTATAGCGAGAGGTGAGTTGAG
1 TTCAATTTCTATTTTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
10456039 CCTCAAGACACACTGAGATAAT
66 CCTCAAGACACACTGAGATAAT
10456061 TTCAATTTCTATTTTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTCAATTTCTATTTTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
10456126 CCTCAAGACACACTGAGATAAT
66 CCTCAAGACACACTGAGATAAT
10456148 TTCAATTTCTATTTTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTCAATTTCTATTTTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* *
10456213 CCTC-AGAACACGCTGAGGTAAT
66 CCTCAAG-ACACACTGAGATAAT
*
10456235 TTCAATTTCTATGTTTCAA
1 TTCAATTTCTATTTTTCAA
10456254 AAATCAACTC
Statistics
Matches: 183, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
86 17 0.09
87 166 0.91
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (87 bp):
TTCAATTTCTATTTTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CCTCAAGACACACTGAGATAAT
Found at i:10456166 original size:14 final size:14
Alignment explanation
Indices: 10456147--10456180 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
10456137 ACTGAGATAA
*
10456147 TTTCAATTTCTATT
1 TTTCAATTTCTACT
10456161 TTTCAATTTCTACT
1 TTTCAATTTCTACT
10456175 TTTCAA
1 TTTCAA
10456181 AAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.24, C:0.18, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTCAATTTCTACT
Found at i:10456280 original size:73 final size:72
Alignment explanation
Indices: 10456161--10456357 Score: 295
Period size: 73 Copynumber: 2.7 Consensus size: 72
10456151 AATTTCTATT
10456161 TTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGC
1 TTTCAATTTCTA-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGC
10456226 TGAGGTAA
65 TGAGGTAA
* * **
10456234 TTTCAATTTCTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCGGGGCACGC
1 TTTCAATTTCTAT-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGC
*
10456299 TGAGGTAT
65 TGAGGTAA
* * *
10456307 TTTCAAATTCTATTTTTCAAAAATCAATTCATATTGTGAGAGGTGAGTTGA
1 TTTCAATTTCTA-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
10456358 ACCTTGGTTC
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
72 1 0.01
73 111 0.98
74 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (72 bp):
TTTCAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCT
GAGGTAA
Found at i:10456672 original size:19 final size:19
Alignment explanation
Indices: 10456648--10456686 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
10456638 TATTTTCAAA
10456648 AGTCAACTCATATTGCGAG
1 AGTCAACTCATATTGCGAG
*
10456667 AGTCAATTCATATTGCGAG
1 AGTCAACTCATATTGCGAG
10456686 A
1 A
10456687 AATGAGTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (19 bp):
AGTCAACTCATATTGCGAG
Found at i:10458912 original size:53 final size:52
Alignment explanation
Indices: 10458834--10458970 Score: 211
Period size: 53 Copynumber: 2.6 Consensus size: 52
10458824 TCTTAATAAC
* * *
10458834 TATATATGTATAGTATGTACGTATTTTATTATTATTACATAATTTTTTAAATA
1 TATATATGTATA-TGTGTGCATATTTTATTATTATTACATAATTTTTTAAATA
*
10458887 TATATATGTATATGTGTGCAATATTTTATTATTATTACGTAATTTTTTAAATA
1 TATATATGTATATGTGTGC-ATATTTTATTATTATTACATAATTTTTTAAATA
10458940 TATATATGTATATGTGTGCATATTTATATTA
1 TATATATGTATATGTGTGCATATTT-TATTA
10458971 ATAGTTGTTT
Statistics
Matches: 78, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
52 11 0.14
53 67 0.86
ACGTcount: A:0.34, C:0.04, G:0.09, T:0.53
Consensus pattern (52 bp):
TATATATGTATATGTGTGCATATTTTATTATTATTACATAATTTTTTAAATA
Found at i:10459445 original size:15 final size:16
Alignment explanation
Indices: 10459425--10459454 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10459415 CATTGCCATG
10459425 TTATA-TTTTTATGTA
1 TTATATTTTTTATGTA
10459440 TTATATTTTTTATGT
1 TTATATTTTTTATGT
10459455 TATGTACATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (16 bp):
TTATATTTTTTATGTA
Found at i:10459570 original size:20 final size:22
Alignment explanation
Indices: 10459528--10459573 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
10459518 GTAGTATATA
* *
10459528 TATATATTTTGACTATTTCATG
1 TATATATTTTAAATATTTCATG
10459550 TATATATTTTAAATA-TT-ATG
1 TATATATTTTAAATATTTCATG
10459570 TATA
1 TATA
10459574 GTATATTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.32
21 2 0.09
22 13 0.59
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (22 bp):
TATATATTTTAAATATTTCATG
Found at i:10463976 original size:4 final size:4
Alignment explanation
Indices: 10463967--10463994 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
10463957 GTTGTTTAGA
10463967 ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC
10463995 GTGCATATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:10465314 original size:18 final size:18
Alignment explanation
Indices: 10465291--10465328 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
10465281 ATAAAGAAAA
10465291 GAAAAGAAATTTAAGAAC
1 GAAAAGAAATTTAAGAAC
10465309 GAAAAGAAATTTAAGAAC
1 GAAAAGAAATTTAAGAAC
10465327 GA
1 GA
10465329 CTAGGTCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.61, C:0.05, G:0.18, T:0.16
Consensus pattern (18 bp):
GAAAAGAAATTTAAGAAC
Found at i:10474312 original size:17 final size:17
Alignment explanation
Indices: 10474276--10474326 Score: 68
Period size: 17 Copynumber: 3.0 Consensus size: 17
10474266 GCTTTCAAGC
10474276 TTGGTGAGCTCGCA-TAT
1 TTGGTGAGCTCGCAGT-T
10474293 TTGGTGAGCTCGCAGTT
1 TTGGTGAGCTCGCAGTT
* *
10474310 TTGATGACCTCGCAGTT
1 TTGGTGAGCTCGCAGTT
10474327 CGCACTATTG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
17 30 0.97
18 1 0.03
ACGTcount: A:0.16, C:0.20, G:0.29, T:0.35
Consensus pattern (17 bp):
TTGGTGAGCTCGCAGTT
Found at i:10474793 original size:20 final size:20
Alignment explanation
Indices: 10474765--10474805 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
10474755 ATTTTGTTAA
10474765 CTAAACCATTTGAATTAAAT
1 CTAAACCATTTGAATTAAAT
* *
10474785 CTAAGCCATTTTAATTAAAT
1 CTAAACCATTTGAATTAAAT
10474805 C
1 C
10474806 AAGAACAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.37
Consensus pattern (20 bp):
CTAAACCATTTGAATTAAAT
Found at i:10480681 original size:18 final size:18
Alignment explanation
Indices: 10480616--10480730 Score: 88
Period size: 18 Copynumber: 6.3 Consensus size: 18
10480606 AGCAATTAAT
*
10480616 CAATCAGTAATATTCATTAA
1 CAATCAGT--TATTCAGTAA
* * *
10480636 CAATCAGTGAATCA-AAA
1 CAATCAGTTATTCAGTAA
* *
10480653 CAATTATTTATTCAGTAA
1 CAATCAGTTATTCAGTAA
* *
10480671 CAGTCAGTTATTCGGTAA
1 CAATCAGTTATTCAGTAA
* *
10480689 CAATCAATTATTCAATAA
1 CAATCAGTTATTCAGTAA
* * *
10480707 TAATCAGTTACTCAGTAT
1 CAATCAGTTATTCAGTAA
10480725 CAATCA
1 CAATCA
10480731 ATTGATCGTT
Statistics
Matches: 72, Mismatches: 22, Indels: 4
0.73 0.22 0.04
Matches are distributed among these distances:
17 12 0.17
18 52 0.72
20 8 0.11
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.33
Consensus pattern (18 bp):
CAATCAGTTATTCAGTAA
Found at i:10480700 original size:36 final size:36
Alignment explanation
Indices: 10480626--10480733 Score: 101
Period size: 36 Copynumber: 3.0 Consensus size: 36
10480616 CAATCAGTAA
* * * * * *
10480626 TATTCATTAACAATCAGTGAATCA-AAACAATTATT
1 TATTCAATAACAATCAGTTACTCAGTAACAATCAAT
* * * *
10480661 TATTCAGTAACAGTCAGTTATTCGGTAACAATCAAT
1 TATTCAATAACAATCAGTTACTCAGTAACAATCAAT
* *
10480697 TATTCAATAATAATCAGTTACTCAGTATCAATCAAT
1 TATTCAATAACAATCAGTTACTCAGTAACAATCAAT
10480733 T
1 T
10480734 GATCGTTTAT
Statistics
Matches: 58, Mismatches: 14, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
35 19 0.33
36 39 0.67
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (36 bp):
TATTCAATAACAATCAGTTACTCAGTAACAATCAAT
Found at i:10481048 original size:53 final size:53
Alignment explanation
Indices: 10480929--10481049 Score: 154
Period size: 53 Copynumber: 2.3 Consensus size: 53
10480919 CCGGAACAGT
* * **
10480929 AACAGTAATAGTAGCAGTACGGTACACAAAGTACCTCATCAGAACAAATTTAG
1 AACAGTAATAGTAACAGTACGGTACACAAAGTACCTCATCAAAACAAATCGAG
* * *
10480982 AACGGTAATAGTAACAGTACGGTACACAGATTACCTCATCAAAACAAATCCGA-
1 AACAGTAATAGTAACAGTACGGTACACAAAGTACCTCATCAAAACAAAT-CGAG
*
10481035 AACAGTAACAGTAAC
1 AACAGTAATAGTAAC
10481050 GGTAACAGTA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 57 0.98
54 1 0.02
ACGTcount: A:0.45, C:0.21, G:0.16, T:0.19
Consensus pattern (53 bp):
AACAGTAATAGTAACAGTACGGTACACAAAGTACCTCATCAAAACAAATCGAG
Found at i:10490615 original size:28 final size:28
Alignment explanation
Indices: 10490575--10490631 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
10490565 TTCAAAATCA
*
10490575 TGTAAATCAAATAATTCATTAATAGTGT
1 TGTAAATCAAATAATTCATTAACAGTGT
10490603 TGTAAATCAAATAATTCATTAACAGTGT
1 TGTAAATCAAATAATTCATTAACAGTGT
10490631 T
1 T
10490632 TGAACTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.39
Consensus pattern (28 bp):
TGTAAATCAAATAATTCATTAACAGTGT
Found at i:10495378 original size:26 final size:21
Alignment explanation
Indices: 10495329--10495370 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
10495319 CTTCATATTG
10495329 AATTTGATAAACTGGATGGGT
1 AATTTGATAAACTGGATGGGT
10495350 AATTTGATAAACTGGATGGGT
1 AATTTGATAAACTGGATGGGT
10495371 TATCTAATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (21 bp):
AATTTGATAAACTGGATGGGT
Found at i:10504442 original size:27 final size:27
Alignment explanation
Indices: 10504404--10504458 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
10504394 GTTACGGAAA
*
10504404 GTTAGTTTTCTCGGGCATATAGTATCT
1 GTTAGTTTTCTCCGGCATATAGTATCT
10504431 GTTAGTTTTCTCCGGCATATAGTATCT
1 GTTAGTTTTCTCCGGCATATAGTATCT
10504458 G
1 G
10504459 CTGAAGGTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.18, C:0.16, G:0.22, T:0.44
Consensus pattern (27 bp):
GTTAGTTTTCTCCGGCATATAGTATCT
Found at i:10512199 original size:17 final size:17
Alignment explanation
Indices: 10512179--10512211 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
10512169 CTGAACTTAA
10512179 AGATAATTTGAAAATTT
1 AGATAATTTGAAAATTT
10512196 AGATAATTTGAAAATT
1 AGATAATTTGAAAATT
10512212 GGGCTATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.39
Consensus pattern (17 bp):
AGATAATTTGAAAATTT
Found at i:10524165 original size:17 final size:17
Alignment explanation
Indices: 10524126--10524168 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
10524116 CTATGATTGT
**
10524126 ATTGA-ATTTGATGTTA
1 ATTGACATTTGATGGAA
*
10524142 ATGGACATTTGATGGAA
1 ATTGACATTTGATGGAA
10524159 ATTGACATTT
1 ATTGACATTT
10524169 TAAATGGAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.42
Consensus pattern (17 bp):
ATTGACATTTGATGGAA
Found at i:10530076 original size:19 final size:20
Alignment explanation
Indices: 10530039--10530076 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
10530029 AATGACAAGA
*
10530039 AAATGAGAAAACAAGAAAGT
1 AAATGAGAAAACAAAAAAGT
*
10530059 AAATG-GAAGACAAAAAAG
1 AAATGAGAAAACAAAAAAG
10530077 GTGAAGAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.66, C:0.05, G:0.21, T:0.08
Consensus pattern (20 bp):
AAATGAGAAAACAAAAAAGT
Found at i:10533797 original size:13 final size:14
Alignment explanation
Indices: 10533773--10533801 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
10533763 CGCTTGCAGT
10533773 GGCCGAAGGCCGGA
1 GGCCGAAGGCCGGA
10533787 GGCCG-AGGCCGGA
1 GGCCGAAGGCCGGA
10533800 GG
1 GG
10533802 GATCCCCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.17, C:0.28, G:0.55, T:0.00
Consensus pattern (14 bp):
GGCCGAAGGCCGGA
Found at i:10535430 original size:5 final size:5
Alignment explanation
Indices: 10535414--10535443 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
10535404 AAATATATAT
10535414 TTGTA TTTGTA TTGTA TTGTA TTGTA TTGT
1 TTGTA -TTGTA TTGTA TTGTA TTGTA TTGT
10535444 TTTTATACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.17, C:0.00, G:0.20, T:0.63
Consensus pattern (5 bp):
TTGTA
Found at i:10542250 original size:16 final size:17
Alignment explanation
Indices: 10542212--10542250 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
10542202 TTTTTATTAA
10542212 GTTTTTAAGATTCATTT
1 GTTTTTAAGATTCATTT
10542229 GTTTTTAAGATTCATTT
1 GTTTTTAAGATTCATTT
10542246 GTTTT
1 GTTTT
10542251 CCTTTTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.21, C:0.05, G:0.13, T:0.62
Consensus pattern (17 bp):
GTTTTTAAGATTCATTT
Found at i:10544059 original size:13 final size:13
Alignment explanation
Indices: 10544041--10544067 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
10544031 AAAGTAATCG
10544041 CACACGGGCGTGT
1 CACACGGGCGTGT
10544054 CACACGGGCGTGT
1 CACACGGGCGTGT
10544067 C
1 C
10544068 CCTGATTCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:10561495 original size:24 final size:24
Alignment explanation
Indices: 10561463--10561586 Score: 158
Period size: 24 Copynumber: 5.0 Consensus size: 24
10561453 GACATTGTGC
*
10561463 TAAGTGAAATAAGACCATGGCATT
1 TAAGTGAAATAAGTCCATGGCATT
*
10561487 TAAGTGAAATAAGACCATGGCATT
1 TAAGTGAAATAAGTCCATGGCATT
*
10561511 TAAGTAAAATAAGTCCATGGCAATGT
1 TAAGTGAAATAAGTCCATGGC-AT-T
* *
10561537 GCTAAGTGAAATAAGTCCATGTCATC
1 --TAAGTGAAATAAGTCCATGGCATT
*
10561563 TAAGTCAAATAAGTCCATGGCATT
1 TAAGTGAAATAAGTCCATGGCATT
10561587 GTGCTAAGTG
Statistics
Matches: 88, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
24 64 0.73
25 2 0.02
26 1 0.01
27 2 0.02
28 19 0.22
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.27
Consensus pattern (24 bp):
TAAGTGAAATAAGTCCATGGCATT
Found at i:10561567 original size:52 final size:52
Alignment explanation
Indices: 10561462--10561597 Score: 181
Period size: 52 Copynumber: 2.7 Consensus size: 52
10561452 TGACATTGTG
* *
10561462 CTAAGTGAAATAAGACCATGGC-AT-T--TAAGTGAAATAAGACCATGGCAT
1 CTAAGTAAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGACCATGGCAT
* * *
10561510 TTAAGTAAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGTCCATGTCAT
1 CTAAGTAAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGACCATGGCAT
* *
10561562 CTAAGTCAAATAAGTCCATGGCATTGTGCTAAGTGA
1 CTAAGTAAAATAAGTCCATGGCAATGTGCTAAGTGA
10561598 GAAATTTCCC
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
48 19 0.25
49 2 0.03
50 1 0.01
52 54 0.71
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (52 bp):
CTAAGTAAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGACCATGGCAT
Found at i:10561676 original size:51 final size:51
Alignment explanation
Indices: 10561621--10561819 Score: 310
Period size: 51 Copynumber: 3.9 Consensus size: 51
10561611 TGAACCATAG
*
10561621 GAATAAAATAGATTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
10561672 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCCCTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
10561723 GAATTAAATAGCTTCGGACACAAGTGTGGTACTAGGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
10561774 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTCTGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
10561820 CGTGTATCTG
Statistics
Matches: 134, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
50 1 0.01
51 133 0.99
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:10562308 original size:17 final size:17
Alignment explanation
Indices: 10562286--10562319 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
10562276 ACAGAGTCAG
10562286 AATGATTTTGGAATCTT
1 AATGATTTTGGAATCTT
10562303 AATGATTTTGGAATCTT
1 AATGATTTTGGAATCTT
10562320 CTGTTCTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.18, T:0.47
Consensus pattern (17 bp):
AATGATTTTGGAATCTT
Found at i:10564372 original size:27 final size:27
Alignment explanation
Indices: 10564334--10564445 Score: 131
Period size: 27 Copynumber: 4.1 Consensus size: 27
10564324 AGCATGGCTG
* *
10564334 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
10564360 CCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
10564388 CCAGA-ACAGATATATGTGGTAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
10564415 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
10564442 CCAG
1 CCAG
10564446 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
26 6 0.08
27 51 0.69
28 17 0.23
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:10564426 original size:54 final size:54
Alignment explanation
Indices: 10564334--10564445 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
10564324 AGCATGGCTG
* *
10564334 CCAGAACAGATAATGTGACAGAGTCACCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
** * *
10564388 CCAGAACAGATATATGTGGTAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
10564442 CCAG
1 CCAG
10564446 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:10572306 original size:27 final size:26
Alignment explanation
Indices: 10572243--10572353 Score: 105
Period size: 27 Copynumber: 4.1 Consensus size: 26
10572233 AGCATGGCTG
* * **
10572243 CCAGAACAGATAATGTGACAGAGTAA
1 CCAGAGCAGATAATGTGGCAGAGCCA
* *
10572269 CCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGA-GCAGATAAT-GTGGCAGAGCCA
10572297 CCAGAGCAGATATATGTGGCAGAGCCA
1 CCAGAGCAGATA-ATGTGGCAGAGCCA
* * *
10572324 CTAGATCAGATAATTGTGGCATAGCCA
1 CCAGAGCAGATAA-TGTGGCAGAGCCA
10572351 CCA
1 CCA
10572354 AGACGCTTCC
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 6 0.08
27 50 0.70
28 15 0.21
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (26 bp):
CCAGAGCAGATAATGTGGCAGAGCCA
Found at i:10572334 original size:54 final size:54
Alignment explanation
Indices: 10572243--10572353 Score: 134
Period size: 54 Copynumber: 2.1 Consensus size: 54
10572233 AGCATGGCTG
* *
10572243 CCAGAACAGATAATGTGACAGAGTAACCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCAACCAGATACAGATAATCGTGGCAGAGCCA
* * * * * *
10572297 CCAGAGCAGATATATGTGGCAGAGCCACTAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCAACCAGATACAGATAATCGTGGCAGAGCCA
10572351 CCA
1 CCA
10572354 AGACGCTTCC
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 32 0.67
55 16 0.33
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCAACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:10574768 original size:27 final size:27
Alignment explanation
Indices: 10574738--10574915 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
10574728 ATATTGAGTC
* * * *
10574738 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
10574765 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
10574792 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
10574820 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
10574847 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
10574874 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
10574901 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
10574916 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:10574877 original size:82 final size:81
Alignment explanation
Indices: 10574759--10574914 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
10574749 TGCTATATAA
* *
10574759 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
10574824 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
10574841 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
10574905 CACTTAGTGC
65 CACTTAGTGC
10574915 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:10582831 original size:27 final size:27
Alignment explanation
Indices: 10582801--10582978 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
10582791 ATATTGAGTC
* * * *
10582801 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
10582828 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
10582855 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
10582883 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
10582910 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
10582937 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
10582964 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
10582979 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:10582940 original size:82 final size:81
Alignment explanation
Indices: 10582822--10582977 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
10582812 TGCTATATAA
* *
10582822 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
10582887 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
10582904 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
10582968 CACTTAGTGC
65 CACTTAGTGC
10582978 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:10587142 original size:52 final size:50
Alignment explanation
Indices: 10587070--10587171 Score: 177
Period size: 52 Copynumber: 2.0 Consensus size: 50
10587060 GATTTCATCC
10587070 CTAGGCTCGGAAAATGAAATTCATGAAATTTAACACTCTTTCCAAGCCTAG
1 CTAGGCTCGGAAAATGAAATTCATGAAATTTAACACTC-TTCCAAGCCTAG
*
10587121 NCTAGGCTCGGAAAATGAAATTCATGAAATTTAACCCTCTTCCAAGCCTAG
1 -CTAGGCTCGGAAAATGAAATTCATGAAATTTAACACTCTTCCAAGCCTAG
10587172 TCAAAATTTA
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 12 0.24
52 37 0.76
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.26
Consensus pattern (50 bp):
CTAGGCTCGGAAAATGAAATTCATGAAATTTAACACTCTTCCAAGCCTAG
Found at i:10591220 original size:75 final size:75
Alignment explanation
Indices: 10591097--10591247 Score: 194
Period size: 75 Copynumber: 2.0 Consensus size: 75
10591087 TGCATAGCCA
* * * *
10591097 TACCCTCATCGACCATACGGCCGTGTTTTCACACATGGCCTACCACACGCCCATGTGGCATTAAC
1 TACCCTCATCGACCATACGACCGTGTTTTCACACACGGCCTACAACACGCCCATGTGGCATCAAC
10591162 AGAACTATCT
66 AGAACTATCT
* *** * * * *
10591172 TACCCTCATCGACCATACGATCGTGTTTTTGTACACGGCCTACAACACGCTCGTGTGGCGTCAAT
1 TACCCTCATCGACCATACGACCGTGTTTTCACACACGGCCTACAACACGCCCATGTGGCATCAAC
10591237 AGAACTATCT
66 AGAACTATCT
10591247 T
1 T
10591248 TCAACTTTTG
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
75 64 1.00
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (75 bp):
TACCCTCATCGACCATACGACCGTGTTTTCACACACGGCCTACAACACGCCCATGTGGCATCAAC
AGAACTATCT
Found at i:10606032 original size:19 final size:19
Alignment explanation
Indices: 10605988--10606033 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
10605978 CCTTTTGATT
10605988 TTTTTTTTATTTCAATTGA
1 TTTTTTTTATTTCAATTGA
* * * *
10606007 GTATTTTTATTTCAGTTTA
1 TTTTTTTTATTTCAATTGA
10606026 TTTTTTTT
1 TTTTTTTT
10606034 TCTCTTGTAA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.17, C:0.04, G:0.07, T:0.72
Consensus pattern (19 bp):
TTTTTTTTATTTCAATTGA
Found at i:10606916 original size:29 final size:29
Alignment explanation
Indices: 10606860--10606917 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
10606850 TATTATTTAT
*
10606860 TTTAAAATCTTTTATATATAATTTATTTC
1 TTTAAAATCTTTTATATATAATTGATTTC
* * **
10606889 TTTAAATTGTTTTATATATTGTTGATTTC
1 TTTAAAATCTTTTATATATAATTGATTTC
10606918 AAATTTCTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.60
Consensus pattern (29 bp):
TTTAAAATCTTTTATATATAATTGATTTC
Found at i:10606993 original size:16 final size:17
Alignment explanation
Indices: 10606957--10606995 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
10606947 TAACATTGTT
*
10606957 TATTTTTTATATTTATTA
1 TATTTTTTAAATTTA-TA
10606975 TATTTTTTAAATTTA-A
1 TATTTTTTAAATTTATA
10606991 TATTT
1 TATTT
10606996 GTATTTGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 6 0.30
18 14 0.70
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TATTTTTTAAATTTATA
Found at i:10614656 original size:23 final size:21
Alignment explanation
Indices: 10614609--10614656 Score: 51
Period size: 23 Copynumber: 2.2 Consensus size: 21
10614599 TTACATAAGG
*
10614609 TTTAATTACCTATTAATACTT
1 TTTAATTACCTATTAATACTA
* *
10614630 TTTAATTTACTCTCTTATTACTA
1 TTTAA-TTAC-CTATTAATACTA
10614653 TTTA
1 TTTA
10614657 TAGCTTTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 5 0.23
22 4 0.18
23 13 0.59
ACGTcount: A:0.29, C:0.15, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTAATTACCTATTAATACTA
Found at i:10617167 original size:40 final size:40
Alignment explanation
Indices: 10617118--10617250 Score: 160
Period size: 40 Copynumber: 3.3 Consensus size: 40
10617108 TCAATCTCCC
10617118 ACACTAAGTGCCATATATAGCCGAAGCTATTCTGATTCGT
1 ACACTAAGTGCCATATATAGCCGAAGCTATTCTGATTCGT
** * * *
10617158 ACACTAAGTGCTTTATATAGCCGAAGCGATTCCGATTTGT
1 ACACTAAGTGCCATATATAGCCGAAGCTATTCTGATTCGT
** * * *
10617198 ACACTAAGTGCTTTATATAGTCGAAGCTA-TCTCGATACGC
1 ACACTAAGTGCCATATATAGCCGAAGCTATTCT-GATTCGT
10617238 ACACTAAGTGCCA
1 ACACTAAGTGCCA
10617251 AACATAATCG
Statistics
Matches: 79, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.03
40 77 0.97
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (40 bp):
ACACTAAGTGCCATATATAGCCGAAGCTATTCTGATTCGT
Found at i:10618194 original size:19 final size:19
Alignment explanation
Indices: 10618170--10618208 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
10618160 TATGCGAGGG
*
10618170 ATCAGATCTATATCGTCGA
1 ATCAGATCTATATCATCGA
*
10618189 ATCAGATCTGTATCATCGA
1 ATCAGATCTATATCATCGA
10618208 A
1 A
10618209 GCATCGATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (19 bp):
ATCAGATCTATATCATCGA
Found at i:10622666 original size:28 final size:27
Alignment explanation
Indices: 10622617--10622670 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
10622607 ATGCATTTCA
*
10622617 TTTATTTTTCATTTTAGTCCCTCAATTT
1 TTTATTTTTCAATTTAGTCCCT-AATTT
10622645 TTTATTTTTGCAATTTAG-CCCTAATT
1 TTTATTTTT-CAATTTAGTCCCTAATT
10622671 ACTCAAAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 4 0.17
28 13 0.54
29 7 0.29
ACGTcount: A:0.20, C:0.17, G:0.06, T:0.57
Consensus pattern (27 bp):
TTTATTTTTCAATTTAGTCCCTAATTT
Found at i:10628576 original size:21 final size:20
Alignment explanation
Indices: 10628552--10628590 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
10628542 GATGTCATTC
10628552 AAATATACACATTTTTACTCT
1 AAATATA-ACATTTTTACTCT
* *
10628573 AAATGTAACCTTTTTACT
1 AAATATAACATTTTTACT
10628591 TTGTAATTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.36, C:0.18, G:0.03, T:0.44
Consensus pattern (20 bp):
AAATATAACATTTTTACTCT
Done.