Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 57 of 167
Found at i:17792842 original size:40 final size:40
Alignment explanation
Indices: 17792775--17792982 Score: 271
Period size: 40 Copynumber: 5.2 Consensus size: 40
17792765 CCTTATGGAT
* *
17792775 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCACACAAATGCCTTCGGGAC
*
17792814 TTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGAC
* * *
17792854 CTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGAC
1 TTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGAC
* *
17792894 TTAGCCCGGATATAGTAACTCGCAGAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGAC
* *
17792934 TTAGCCC-GAAATTAGTCACT-AGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCA-CACAAATGCCTTCGGGAC
17792974 TTAGCCCGG
1 TTAGCCCGG
17792983 TTATCATCCG
Statistics
Matches: 150, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 8 0.05
40 141 0.94
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGAC
Found at i:17797921 original size:27 final size:27
Alignment explanation
Indices: 17797891--17798006 Score: 153
Period size: 27 Copynumber: 4.3 Consensus size: 27
17797881 TTATTTACTT
*
17797891 GTAAAATGATCGAAATACCCCTAAAGG
1 GTAAAATGATCGAAATACCCCTATAGG
* *
17797918 GTAAAATGACCGAAATACCCCCATAGG
1 GTAAAATGATCGAAATACCCCTATAGG
17797945 GTAAAATGATCGAAATACCCCTATAGG
1 GTAAAATGATCGAAATACCCCTATAGG
* * * *
17797972 GTAAAATGA-CTGTAATACCCATGTAAG
1 GTAAAATGATC-GAAATACCCCTATAGG
17797999 GTAAAATG
1 GTAAAATG
17798007 TTGTTTTGCC
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 78 0.99
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.21
Consensus pattern (27 bp):
GTAAAATGATCGAAATACCCCTATAGG
Found at i:17798002 original size:54 final size:54
Alignment explanation
Indices: 17797891--17798006 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
17797881 TTATTTACTT
* *
17797891 GTAAAATGATCGAAATACCCCTAAAGGGTAAAATGACCGAAATACCCCCATAGG
1 GTAAAATGATCGAAATACCCCTAAAGGGTAAAATGACCGAAATACCCACATAAG
* * * **
17797945 GTAAAATGATCGAAATACCCCTATAGGGTAAAATGACTGTAATACCCATGTAAG
1 GTAAAATGATCGAAATACCCCTAAAGGGTAAAATGACCGAAATACCCACATAAG
17797999 GTAAAATG
1 GTAAAATG
17798007 TTGTTTTGCC
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.21
Consensus pattern (54 bp):
GTAAAATGATCGAAATACCCCTAAAGGGTAAAATGACCGAAATACCCACATAAG
Found at i:17798113 original size:27 final size:27
Alignment explanation
Indices: 17798010--17798124 Score: 126
Period size: 27 Copynumber: 4.3 Consensus size: 27
17798000 TAAAATGTTG
** **
17798010 TTTTG-CCTTATGTATTAAAATGACGG
1 TTTTGCCCTTATGTGGTAAAATGACTA
* *
17798036 TTTTTCCCTTATGTGGTAAAATGACAA
1 TTTTGCCCTTATGTGGTAAAATGACTA
17798063 TTTTGCCCTTAT-TAGGTAAAATGACTA
1 TTTTGCCCTTATGT-GGTAAAATGACTA
** *
17798090 TTTTGCCCTTATGTGGTAGGATGACTG
1 TTTTGCCCTTATGTGGTAAAATGACTA
17798117 TTTTGCCC
1 TTTTGCCC
17798125 CTATCTGATG
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
26 5 0.07
27 70 0.92
28 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (27 bp):
TTTTGCCCTTATGTGGTAAAATGACTA
Found at i:17798486 original size:18 final size:18
Alignment explanation
Indices: 17798459--17798508 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
17798449 TGCATACTGC
*
17798459 TTACTATTACTGCATTGA-
1 TTACTATTACTGCACT-AT
*
17798477 TTACTGTTACTGCACTAT
1 TTACTATTACTGCACTAT
17798495 TTACTATTACTGCA
1 TTACTATTACTGCA
17798509 ATGGGCCAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 1 0.04
18 27 0.96
ACGTcount: A:0.26, C:0.20, G:0.10, T:0.44
Consensus pattern (18 bp):
TTACTATTACTGCACTAT
Found at i:17802705 original size:17 final size:19
Alignment explanation
Indices: 17802671--17802710 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
17802661 TTGGGCCTTG
17802671 ATGGGCCGTGTGGACCCA-
1 ATGGGCCGTGTGGACCCAC
*
17802689 ATGGGCC-TGTGGGCCCAC
1 ATGGGCCGTGTGGACCCAC
17802707 ATGG
1 ATGG
17802711 ATAAAATCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.15, C:0.28, G:0.40, T:0.17
Consensus pattern (19 bp):
ATGGGCCGTGTGGACCCAC
Found at i:17802959 original size:27 final size:27
Alignment explanation
Indices: 17802911--17803025 Score: 101
Period size: 27 Copynumber: 4.3 Consensus size: 27
17802901 TTAGGTCGTT
* *
17802911 AATACCCTCGA-TTATAAAATTA-TAGA
1 AATACCCTCTATTTGTAAAATTACT-GA
*
17802937 AATGCCCT-TGATTTGTAAAATTACTGA
1 AATACCCTCT-ATTTGTAAAATTACTGA
**
17802964 AATACCCTCTATTTGTAAAATTACCAA
1 AATACCCTCTATTTGTAAAATTACTGA
* * * *
17802991 AATACCCCCGATTTGTAAAATGACTGT
1 AATACCCTCTATTTGTAAAATTACTGA
*
17803018 AATGCCCT
1 AATACCCT
17803026 TGTAGGGTAA
Statistics
Matches: 71, Mismatches: 14, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
26 8 0.11
27 61 0.86
28 2 0.03
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
AATACCCTCTATTTGTAAAATTACTGA
Found at i:17803035 original size:27 final size:27
Alignment explanation
Indices: 17803005--17803095 Score: 119
Period size: 27 Copynumber: 3.4 Consensus size: 27
17802995 CCCCCGATTT
*
17803005 GTAAAATGACTGTAATGCCCTTGTAGG
1 GTAAAATGACAGTAATGCCCTTGTAGG
* *
17803032 GTAAAATGACAGTAATGCCCCTGTAGA
1 GTAAAATGACAGTAATGCCCTTGTAGG
* * * *
17803059 GTAAAAAGACCGTAATACCCTTGTATG
1 GTAAAATGACAGTAATGCCCTTGTAGG
17803086 GTAAAATGAC
1 GTAAAATGAC
17803096 GACTATGCCC
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.25
Consensus pattern (27 bp):
GTAAAATGACAGTAATGCCCTTGTAGG
Found at i:17803106 original size:27 final size:26
Alignment explanation
Indices: 17803005--17803107 Score: 93
Period size: 27 Copynumber: 3.8 Consensus size: 26
17802995 CCCCCGATTT
**
17803005 GTAAAATGACTGTAATGCCCTTGTAGG
1 GTAAAATGACACTAATGCCCTTGTA-G
* *
17803032 GTAAAATGACAGTAATGCCCCTGTAG
1 GTAAAATGACACTAATGCCCTTGTAG
* *
17803058 AGTAAAAAGAC-CGTAATACCCTTGTATG
1 -GTAAAATGACAC-TAATGCCCTTGTA-G
17803086 GTAAAATGACGACT-ATGCCCTT
1 GTAAAATGAC-ACTAATGCCCTT
17803108 ATGTTCCGTA
Statistics
Matches: 63, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
26 1 0.02
27 59 0.94
28 2 0.03
29 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.26
Consensus pattern (26 bp):
GTAAAATGACACTAATGCCCTTGTAG
Found at i:17805162 original size:53 final size:54
Alignment explanation
Indices: 17805094--17805302 Score: 170
Period size: 53 Copynumber: 3.9 Consensus size: 54
17805084 TTTCCTTTTT
* * * * *
17805094 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTACTTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACTTTATA
* * * ** * *
17805147 GAACTCACCAATGCCATGCCTTGGCATAGTTTTACATGGGA-CTTTTGCTTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATC-CTTACTTTATA
* * * * * * * *
17805201 GTAACTCATCAATGCCATGTCTTGATAAGTTCTTACATGATTTCCTTTCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACTTTATA
* * * *
17805256 GAACTTATCAATGTCATGCCTTGGCATGGTCTTACATGATATCCTTA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTA
17805303 TGATATCCTT
Statistics
Matches: 119, Mismatches: 33, Indels: 7
0.75 0.21 0.04
Matches are distributed among these distances:
52 1 0.01
53 41 0.34
54 38 0.32
55 38 0.32
56 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACTTTATA
Found at i:17805216 original size:55 final size:54
Alignment explanation
Indices: 17805141--17805293 Score: 145
Period size: 55 Copynumber: 2.8 Consensus size: 54
17805131 GGTATCCTTA
*
17805141 CTTTAT-GAACTCACCAATGCCATGCCTTGGCATAGTTTTACATGGGACTT-TTG
1 CTTTATAGAACTCATCAATGCCATGCCTTGGCATAGTTTTACAT-GGACTTCTTG
* * *
17805194 CTTTATAGTAACTCATCAATGCCATGTCTT-G-ATAAGTTCTTACAT-GATTTCCTTT
1 CTTTATAG-AACTCATCAATGCCATGCCTTGGCAT-AGTT-TTACATGGACTT-CTTG
* * * * *
17805249 CCTTATAGAACTTATCAATGTCATGCCTTGGCATGGTCTTACATG
1 CTTTATAGAACTCATCAATGCCATGCCTTGGCATAGTTTTACATG
17805294 ATATCCTTAT
Statistics
Matches: 81, Mismatches: 10, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
53 12 0.15
54 30 0.37
55 37 0.46
56 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (54 bp):
CTTTATAGAACTCATCAATGCCATGCCTTGGCATAGTTTTACATGGACTTCTTG
Found at i:17805290 original size:54 final size:54
Alignment explanation
Indices: 17805084--17805301 Score: 170
Period size: 54 Copynumber: 4.0 Consensus size: 54
17805074 TCGGGAACCT
* * * * * * *
17805084 TTTCCTTTTTGAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCC
1 TTTCCTTATAGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC
* * * * * ** *
17805138 TTACTTTAT-GAACTCACCAATGCCATGCCTTGGCATAGTTTTACATGGGA-CT
1 TTTCCTTATAGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC
* * * * * * *
17805190 TTTGCTTTATAGTAACTCATCAATGCCATGTCTTGATAAGTTCTTACATGATTTCC
1 TTT-CCTTATAG-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC
* * * *
17805246 TTTCCTTATAGAACTTATCAATGTCATGCCTTGGCATGGTCTTACATGATATCC
1 TTTCCTTATAGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC
17805300 TT
1 TT
17805302 ATGATATCCT
Statistics
Matches: 126, Mismatches: 34, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
52 3 0.02
53 39 0.31
54 44 0.35
55 36 0.29
56 4 0.03
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.40
Consensus pattern (54 bp):
TTTCCTTATAGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC
Found at i:17805635 original size:15 final size:14
Alignment explanation
Indices: 17805615--17805662 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 14
17805605 TCACATAACT
17805615 TAATAATAACAATGC
1 TAATAATAA-AATGC
*
17805630 TAATAACAATAATTGC
1 TAATAATAA-AA-TGC
17805646 ATAATAATAAAATGC
1 -TAATAATAAAATGC
17805661 TA
1 TA
17805663 CTCAACTTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 2 0.07
15 13 0.46
16 5 0.18
17 8 0.29
ACGTcount: A:0.54, C:0.10, G:0.06, T:0.29
Consensus pattern (14 bp):
TAATAATAAAATGC
Found at i:17808848 original size:15 final size:16
Alignment explanation
Indices: 17808828--17808860 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
17808818 ATTTATATAT
17808828 ATATATCTGAAAG-AA
1 ATATATCTGAAAGTAA
17808843 ATATATCTGAAAGTAA
1 ATATATCTGAAAGTAA
17808859 AT
1 AT
17808861 GTACACATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.30
Consensus pattern (16 bp):
ATATATCTGAAAGTAA
Found at i:17811473 original size:53 final size:53
Alignment explanation
Indices: 17811399--17811604 Score: 180
Period size: 53 Copynumber: 3.8 Consensus size: 53
17811389 GAACCTTTTC
* * * * *
17811399 CTTTTTGAACTTACCATTGCCATGTCTTGACATGGTCTTACTTGGCATCCTTG
1 CTTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGCATCCTTG
* *
17811452 CTTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTG
1 CTTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGCATCC-TTG
* * * * * * *** *
17811505 CCTTAAAGTAACTCATCAATGCTATGTCTTGAAATGGTCTTACATGATTTCCTTA
1 -CTTTATG-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGCATCCTTG
* * * *
17811560 CCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATG
1 CTTTAT-GAACTCACCAATGCCATGCCTTGACATGGTCTTACATG
17811605 ATATCCTTAT
Statistics
Matches: 122, Mismatches: 26, Indels: 9
0.78 0.17 0.06
Matches are distributed among these distances:
52 2 0.02
53 43 0.35
54 40 0.33
55 35 0.29
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTTATGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGCATCCTTG
Found at i:17811542 original size:55 final size:53
Alignment explanation
Indices: 17811405--17811604 Score: 177
Period size: 55 Copynumber: 3.7 Consensus size: 53
17811395 TTTCCTTTTT
* * * * *
17811405 GAACTTACCATTGCCATGTCTTGACATGGTCTTACTTGGCATCCTTGCTTTAT
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGCATCCTTGCTTAAA
* * *
17811458 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTAAA
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGCATCC-TTG-CTTAAA
* * * *** * *
17811512 GTAACTCATCAATGCTATGTCTTGAAATGGTCTTACATGATTTCCTTACCTTATA
1 G-AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGCATCCTT-GCTTAAA
* * * *
17811567 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATG
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATG
17811605 ATATCCTTAT
Statistics
Matches: 119, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
52 2 0.02
53 38 0.32
54 37 0.31
55 40 0.34
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (53 bp):
GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGCATCCTTGCTTAAA
Found at i:17811601 original size:54 final size:54
Alignment explanation
Indices: 17811405--17811618 Score: 198
Period size: 54 Copynumber: 4.0 Consensus size: 54
17811395 TTTCCTTTTT
* * * * ** * *
17811405 GAACTTACCATTGCCATGTCTTGACATGGTCTTACTTGGCATCCTTGCTTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATA
* ** * *
17811458 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTAAA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTACCTTATA
* * * * *
17811512 GTAACTCATCAATGCTATGTCTTGAAATGGTCTTACATGATTTCCTTACCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATA
* * * *
17811567 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTA
17811619 CCAAATGTCA
Statistics
Matches: 132, Mismatches: 25, Indels: 7
0.80 0.15 0.04
Matches are distributed among these distances:
52 2 0.02
53 42 0.32
54 45 0.34
55 41 0.31
56 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATA
Found at i:17811649 original size:47 final size:47
Alignment explanation
Indices: 17811591--17811712 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
17811581 CATGCCTTGG
* * *
17811591 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
* *
17811638 CATGCTCTTACATGGTATCCTTGTCTTACCAAATGCCATTTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
17811685 TATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
17811713 GTGCCAATGC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.39
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:17815853 original size:16 final size:16
Alignment explanation
Indices: 17815832--17815874 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
17815822 GTAGATCGGT
17815832 AAAAGCTGAAATGCCA
1 AAAAGCTGAAATGCCA
**
17815848 AAAAGCT-ATAATGCTG
1 AAAAGCTGA-AATGCCA
17815864 AAAAGCTGAAA
1 AAAAGCTGAAA
17815875 GTTCGGCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 1 0.04
16 21 0.91
17 1 0.04
ACGTcount: A:0.51, C:0.14, G:0.19, T:0.16
Consensus pattern (16 bp):
AAAAGCTGAAATGCCA
Found at i:17816164 original size:28 final size:29
Alignment explanation
Indices: 17816082--17816171 Score: 114
Period size: 29 Copynumber: 3.1 Consensus size: 29
17816072 TAACAGGTCG
*
17816082 TATGAA-AGTGATTTGGGCCAAATGGGCCA
1 TATGAATA-TGATTTGGGCCTAATGGGCCA
*
17816111 TACGAATATGATTTGGGCCTAATGGGCCA
1 TATGAATATGATTTGGGCCTAATGGGCCA
*
17816140 TATGAATGA-GA-TTGGGCCTAGTGGGCCA
1 TATGAAT-ATGATTTGGGCCTAATGGGCCA
17816168 TATG
1 TATG
17816172 CATGTATGTC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
28 20 0.36
29 33 0.60
30 2 0.04
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
TATGAATATGATTTGGGCCTAATGGGCCA
Found at i:17816209 original size:24 final size:24
Alignment explanation
Indices: 17816182--17816228 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
17816172 CATGTATGTC
17816182 GACTTGTTTGGGCTCTGTAAGGGA
1 GACTTGTTTGGGCTCTGTAAGGGA
17816206 GACTTGTTTGGGCTCTGTAAGGG
1 GACTTGTTTGGGCTCTGTAAGGG
17816229 GTTTTGGGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.15, C:0.13, G:0.38, T:0.34
Consensus pattern (24 bp):
GACTTGTTTGGGCTCTGTAAGGGA
Found at i:17820132 original size:29 final size:29
Alignment explanation
Indices: 17820098--17820222 Score: 135
Period size: 29 Copynumber: 4.3 Consensus size: 29
17820088 GGAAGCTCGT
17820098 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * * *
17820127 GTATGAAAGTGATTTGGGACTAATGGACC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* ** *
17820156 AGACAAATATGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
17820185 ATAGGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
17820213 ATATGCATGT
1 ATATGAATGT
17820223 ATGTAGACTT
Statistics
Matches: 75, Mismatches: 21, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
28 22 0.29
29 53 0.71
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:17826811 original size:29 final size:30
Alignment explanation
Indices: 17826751--17826825 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
17826741 AGCCAGAGCT
*
17826751 ATCCTTTTTCATAATTCAAAGGTCGTTACC
1 ATCCTTTTTCATAATTCAAAGGTCGTCACC
** * *
17826781 ATCCTTTTTCATTGTT-AATGGTTGTCACC
1 ATCCTTTTTCATAATTCAAAGGTCGTCACC
17826810 ATCCCTTTTT-ATAATT
1 AT-CCTTTTTCATAATT
17826826 TGATAGCCAA
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
29 16 0.43
30 21 0.57
ACGTcount: A:0.23, C:0.21, G:0.09, T:0.47
Consensus pattern (30 bp):
ATCCTTTTTCATAATTCAAAGGTCGTCACC
Found at i:17826833 original size:89 final size:89
Alignment explanation
Indices: 17826708--17827044 Score: 358
Period size: 89 Copynumber: 3.8 Consensus size: 89
17826698 GTAAAGTCAC
* * * * *
17826708 GATGGTTGTCACCATCCCTTTTCATAGTTCGATAGCCAG-AGCTATCCTTTTTCATAATTCAAAG
1 GATGGTCGTCACCATCCCTTTTCATAATTCGATAG-CAGAAGCTATCCCTTTTCATAATTCGATG
*
17826772 GTCGTTACCATCCTTTTTCATTGTT
65 GTCGTCACCATCCTTTTTCATTGTT
* * * * * * * *
17826797 AATGGTTGTCACCATCCCTTTTTATAATTTGATAGCCA-AGGTTATCCTTTTTTGA-AATTCGAT
1 GATGGTCGTCACCATCCCTTTTCATAATTCGATAG-CAGAAGCTATCC-CTTTTCATAATTCGAT
17826860 GGTCGTCACCATCCCTTTTT-ATTGTT
64 GGTCGTCACCAT-CCTTTTTCATTGTT
* * * * * * *
17826886 GATGGTCATCACCATCCCTTTTCAGAATTTGATAGCAGAAGTTATCCCTTTTCACATTTTGATGG
1 GATGGTCGTCACCATCCCTTTTCATAATTCGATAGCAGAAGCTATCCCTTTTCATAATTCGATGG
*
17826951 TCGTCACCATCCCTTTTCATTGTT
66 TCGTCACCATCCTTTTTCATTGTT
* * * * * *
17826975 GATGGTCGTCACCATCCTTTTTCATTATTCGATAGCTGAAGCTATCCCTTTTCATTAGTCGATGA
1 GATGGTCGTCACCATCCCTTTTCATAATTCGATAGCAGAAGCTATCCCTTTTCATAATTCGATGG
17827040 TCGTC
66 TCGTC
17827045 GATACACCGT
Statistics
Matches: 208, Mismatches: 34, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
88 13 0.06
89 182 0.88
90 13 0.06
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (89 bp):
GATGGTCGTCACCATCCCTTTTCATAATTCGATAGCAGAAGCTATCCCTTTTCATAATTCGATGG
TCGTCACCATCCTTTTTCATTGTT
Found at i:17826889 original size:29 final size:28
Alignment explanation
Indices: 17826857--17827000 Score: 130
Period size: 29 Copynumber: 4.9 Consensus size: 28
17826847 TTTGAAATTC
*
17826857 GATGGTCGTCACCATCCCTTTTTATTGTT
1 GATGGTCGTCACCATCCCTTTTCATT-TT
* *
17826886 GATGGTCATCACCATCCCTTTTCAGAATTT
1 GATGGTCGTCACCATCCCTTTTC--ATTTT
* * **
17826916 GATAG-CAG-AAGTTATCCCTTTTCACATTTT
1 GATGGTC-GTCA-CCATCCCTTTT--CATTTT
17826946 GATGGTCGTCACCATCCCTTTTCATTGTT
1 GATGGTCGTCACCATCCCTTTTCATT-TT
*
17826975 GATGGTCGTCACCATCCTTTTTCATT
1 GATGGTCGTCACCATCCCTTTTCATT
17827001 ATTCGATAGC
Statistics
Matches: 92, Mismatches: 14, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
28 4 0.04
29 50 0.54
30 33 0.36
31 4 0.04
32 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.15, T:0.41
Consensus pattern (28 bp):
GATGGTCGTCACCATCCCTTTTCATTTT
Found at i:17832377 original size:138 final size:138
Alignment explanation
Indices: 17832127--17832686 Score: 743
Period size: 138 Copynumber: 4.1 Consensus size: 138
17832117 AAGAGCATAG
*
17832127 ATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATT
** * * * *
17832192 GAAATAAAGGTTTATAGTAATTGA-TTTCGATCAAAATGTAAAAGACATGAAAATTAATATTCTT
66 -AAATAAACATTTATATTAATTAATTTTAGATCAAAATATAAAAGACATGAAAATTAATATTCTT
17832256 TTGGAAAGA
130 TTGGAAAGA
* * * *
17832265 AGATAATTAATATATGAATTTGATTCATACAAAATATTAATAGCATGTATTTTACT-ACATTTAT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGA-ATTTAT
* * *
17832329 ATTAATAAACATTTATATTAATTAATTTTAG-TCAAAATATAAACGACATGAAAATTAATATCCT
65 -TAAATAAACATTTATATTAATTAATTTTAGATCAAAATATAAAAGACATGAAAATTAATATTCT
* *
17832393 TTTGGGAATA
129 TTTGGAAAGA
* *
17832403 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTCACTGAATTTATC
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATT
* * * * * * *
17832468 AATATAAACAGTTACATTAATTAATTTCAGTTC-AAGTATAATAGACATGGAAATTAATATTCTT
66 AA-ATAAACATTTATATTAATTAATTTTAGATCAAAATATAAAAGACATGAAAATTAATATTCTT
17832532 TTGGAAAGA
130 TTGGAAAGA
* * * *
17832541 ATATTATTAATATATGGATTTGATTCATACAAAATATCAATTGTATATATTTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATT
* * * *
17832606 AATATAAACATTTATATTAATTAA-TTTGGGTCAAAATATAAAAAACATGGAAATTAATATTCTT
66 AA-ATAAACATTTATATTAATTAATTTTAGATCAAAATATAAAAGACATGAAAATTAATATTCTT
17832670 TTGGAAAGA
130 TTGGAAAGA
17832679 ATATAATT
1 ATATAATT
17832687 CATTTTTCTA
Statistics
Matches: 367, Mismatches: 48, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
137 7 0.02
138 352 0.96
139 8 0.02
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (138 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATT
AAATAAACATTTATATTAATTAATTTTAGATCAAAATATAAAAGACATGAAAATTAATATTCTTT
TGGAAAGA
Found at i:17836770 original size:100 final size:100
Alignment explanation
Indices: 17836631--17837012 Score: 728
Period size: 100 Copynumber: 3.8 Consensus size: 100
17836621 GTTTTAGGTT
17836631 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCTCATGTGTGTATTAA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCTCATGTGTGTATTAA
17836696 CTGCAGGCTACTATGCATACCTGATAGCTTCGATC
66 CTGCAGGCTACTATGCATACCTGATAGCTTCGATC
17836731 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCTCATGTGTGTATTAA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCTCATGTGTGTATTAA
17836796 CTGCAGGCTACTATGCATACCTGATAGCTTCGATC
66 CTGCAGGCTACTATGCATACCTGATAGCTTCGATC
17836831 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCTCATGTGTGTATTAA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCTCATGTGTGTATTAA
17836896 CTGCAGGCTACTATGCATACCTGATAGCTTCGATC
66 CTGCAGGCTACTATGCATACCTGATAGCTTCGATC
* *
17836931 ACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCACATGTGTTGTATTA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCTCATGTG-TGTATTA
*
17836996 AGTGCAGGCTACTATGC
65 ACTGCAGGCTACTATGC
17837013 GTAAGAGAGC
Statistics
Matches: 278, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
100 255 0.92
101 23 0.08
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (100 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCTCATGTGTGTATTAA
CTGCAGGCTACTATGCATACCTGATAGCTTCGATC
Found at i:17840322 original size:27 final size:27
Alignment explanation
Indices: 17840283--17840428 Score: 170
Period size: 27 Copynumber: 5.4 Consensus size: 27
17840273 TGGATAAGTT
17840283 GTAGAATTACCGAAATAACCCTGTAGG
1 GTAGAATTACCGAAATAACCCTGTAGG
* *
17840310 GTAGAATTGCCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATAACCCTGTAGG
* *
17840337 ATAGAATTGCCGAAAT-ACCCTTGTAGG
1 GTAGAATTACCGAAATAACCC-TGTAGG
* *
17840364 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATAACCCTGTAGG
* * *
17840391 GTAGAATTATCGAGAT-ACCCTTGTGGG
1 GTAGAATTACCGAAATAACCC-TGTAGG
*
17840418 GTAAAATTACC
1 GTAGAATTACC
17840429 ATTTTGCCCT
Statistics
Matches: 101, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
26 6 0.06
27 92 0.91
28 3 0.03
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATAACCCTGTAGG
Found at i:17840362 original size:54 final size:54
Alignment explanation
Indices: 17840284--17840428 Score: 202
Period size: 54 Copynumber: 2.7 Consensus size: 54
17840274 GGATAAGTTG
*
17840284 TAGAATTACCGAAATAACCC-TGTAGGGTAGAATTGCCGAAATACCCCTGTAGGA
1 TAGAATTACCGAAAT-ACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGA
* * *
17840338 TAGAATTGCCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGA
* * * *
17840392 TAGAATTATCGAGATACCCTTGTGGGGTAAAATTACC
1 TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACC
17840429 ATTTTGCCCT
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 4 0.05
54 76 0.95
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (54 bp):
TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGA
Found at i:17847896 original size:27 final size:27
Alignment explanation
Indices: 17847854--17848000 Score: 195
Period size: 27 Copynumber: 5.4 Consensus size: 27
17847844 TGGATAAGTT
*
17847854 GTAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCAAAATACCCTTGTAGG
* *
17847881 GTAGAATTACCAAAATACCCCTATAGG
1 GTAGAATTACCAAAATACCCTTGTAGG
* *
17847908 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCAAAATACCCTTGTAGG
* *
17847935 GTAGAAATACCAAAATACCCCTGTAGG
1 GTAGAATTACCAAAATACCCTTGTAGG
* * *
17847962 GTAGAATTACCAAGATACCTTTGTGGG
1 GTAGAATTACCAAAATACCCTTGTAGG
*
17847989 GTAAAATTACCA
1 GTAGAATTACCA
17848001 TTTTGCCCCT
Statistics
Matches: 103, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCAAAATACCCTTGTAGG
Found at i:17847937 original size:54 final size:54
Alignment explanation
Indices: 17847855--17848000 Score: 222
Period size: 54 Copynumber: 2.7 Consensus size: 54
17847845 GGATAAGTTG
17847855 TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGA
1 TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGA
* * *
17847909 TAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGA
* * *
17847963 TAGAATTACC-AAGATACCTTTGTGGGGTAAAATTACCA
1 TAGAATTACCGAA-ATACCCTTGTAGGGTAGAATTACCA
17848001 TTTTGCCCCT
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 2 0.02
54 82 0.98
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (54 bp):
TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGA
Found at i:17853204 original size:60 final size:59
Alignment explanation
Indices: 17853111--17853223 Score: 217
Period size: 60 Copynumber: 1.9 Consensus size: 59
17853101 AACCGCTCCC
17853111 ATGCCTCATATAAAGATTCTTCATCAAGTTGTTGAAATGAAGTGATTTCATTTNGCTCTT
1 ATGCCTCATATAAAGATTCTTCATCAAGTTGTTGAAATGAAGTGATTTCATTT-GCTCTT
17853171 ATGCCTCATATAAAGATTCTTCATCAAGTTGTTGAAATGAAGTGATTTCATTT
1 ATGCCTCATATAAAGATTCTTCATCAAGTTGTTGAAATGAAGTGATTTCATTT
17853224 TAGATCTTGC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.40
Consensus pattern (59 bp):
ATGCCTCATATAAAGATTCTTCATCAAGTTGTTGAAATGAAGTGATTTCATTTGCTCTT
Found at i:17854415 original size:37 final size:36
Alignment explanation
Indices: 17854356--17854464 Score: 173
Period size: 37 Copynumber: 3.0 Consensus size: 36
17854346 AGCTCAGACA
* *
17854356 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGAC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
*
17854392 GAAATCTCCAGACGTAGTCATCGGGTCTTACCCGGAC
1 -AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
17854429 ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 A-AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
17854465 ATATATTTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
36 1 0.01
37 66 0.99
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (36 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
Found at i:17854730 original size:47 final size:47
Alignment explanation
Indices: 17854669--17854853 Score: 280
Period size: 47 Copynumber: 3.9 Consensus size: 47
17854659 TACATATATT
* * * *
17854669 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
17854716 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
17854763 TCACATTGGCAATTTGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
**
17854810 TCACATTGGCCATTCGGCCTTATCACATATATGCACATTCACAT
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACAT
17854854 CACAATTATC
Statistics
Matches: 124, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 124 1.00
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:17861588 original size:7 final size:7
Alignment explanation
Indices: 17861576--17861613 Score: 76
Period size: 7 Copynumber: 5.4 Consensus size: 7
17861566 TATTTCATTA
17861576 TATATTT
1 TATATTT
17861583 TATATTT
1 TATATTT
17861590 TATATTT
1 TATATTT
17861597 TATATTT
1 TATATTT
17861604 TATATTT
1 TATATTT
17861611 TAT
1 TAT
17861614 TACATATCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TATATTT
Found at i:17861988 original size:23 final size:22
Alignment explanation
Indices: 17861962--17862037 Score: 80
Period size: 23 Copynumber: 3.3 Consensus size: 22
17861952 AAAAAATTTG
17861962 TATTTATTTTCTTATCTTTTTTT
1 TATTTATTTTCTTAT-TTTTTTT
* *
17861985 TATTTATATGTTCTTAATTTTGTT
1 TATTTAT-T-TTCTTATTTTTTTT
* *
17862009 TATTTATTTTTTGTATTTTTTTG
1 TATTTATTTTCT-TATTTTTTTT
17862032 TATTTA
1 TATTTA
17862038 CTTAATATTG
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
22 3 0.07
23 21 0.48
24 14 0.32
25 6 0.14
ACGTcount: A:0.17, C:0.04, G:0.05, T:0.74
Consensus pattern (22 bp):
TATTTATTTTCTTATTTTTTTT
Found at i:17873836 original size:44 final size:44
Alignment explanation
Indices: 17873787--17874655 Score: 1120
Period size: 44 Copynumber: 19.8 Consensus size: 44
17873777 CGGTGACATC
* * * * *
17873787 TGGCATCTCTATATTGACGGAGAGCAGATCAAAGATAGCAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * * *
17873831 TGGCATCTCTATATTGACAGAGAACAGATCGAAGAT-GACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG-CAGATT
* * *
17873875 TGGCGTCTTTGTATTGTCAGAGAGCAAATCAAAGATAGCAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * *
17873919 TGGCATCTCTGTATTGACAGAGAGTAGATCGAAGAT-GACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG-CAGATT
* ** * * *
17873963 TGGCATCTCTCCATTATCAGAGAGCAGAGCGAAGATAACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* *
17874007 TGGCGTCTCTGTATTGTCAGAGAACAGGTCGAAGATAGCAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * *
17874051 TGGAC-TCTCTGTATTGCCAGAGAGCTGATCAAAGATAGCAGATT
1 TGG-CGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * * *
17874095 TAGCGTCTTTGTATTGTCAGAGAGCAGATCGAAGATAACAGGTT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* *
17874139 TGGCGTCTCTGTATTGTTAGAGAGTAGATCGAAGAT-GACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG-CAGATT
* *
17874183 TGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * *
17874227 TGGTGTCTCTGTATTGTCACAGAGCAGGTCGAAGATAGCAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* *
17874271 TGGCGTCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCAAATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
*
17874315 TAGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGAT-GACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG-CAGATT
* * *
17874359 TGGCATCTCTCTATTGTCAGAGAGCAGATCGAAGATAACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * * *
17874403 TGGCGTCTCTGTATTGTCAAAAAGAAGGTCGAAGATAGCAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * *
17874447 TGGCGTCTCTATATTG-CTAGAGAGCAGGTCGAAGTTAGCAGATT
1 TGGCGTCTCTGTATTGTC-AGAGAGCAGATCGAAGATAGCAGATT
* * *
17874491 TAGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* *
17874535 TGGCGTCTCTGTATTGTCAGAGAGCAGGTCAAAGATAGCAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* *
17874579 TGGCGTCTCTGTATTGCCAGAGAGCAGATCGAAGATAGTAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
*
17874623 TGGCGTCTCTATATTGTCAGAGAGCAGATCGAA
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
17874656 CATTTCGGCT
Statistics
Matches: 716, Mismatches: 97, Indels: 24
0.86 0.12 0.03
Matches are distributed among these distances:
43 5 0.01
44 708 0.99
45 3 0.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (44 bp):
TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
Found at i:17876247 original size:7 final size:7
Alignment explanation
Indices: 17876235--17876265 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
17876225 TATTTCATTA
17876235 TATATTT
1 TATATTT
17876242 TATATTT
1 TATATTT
17876249 TATATTT
1 TATATTT
17876256 TATATTT
1 TATATTT
17876263 TAT
1 TAT
17876266 TACATATCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TATATTT
Found at i:17876637 original size:23 final size:22
Alignment explanation
Indices: 17876611--17876686 Score: 71
Period size: 23 Copynumber: 3.3 Consensus size: 22
17876601 AAAAAATTTG
17876611 TATTTATTTTCTTATCTTTTTTT
1 TATTTATTTTCTTAT-TTTTTTT
* * *
17876634 TATTTACATGTTCTTAATTTTGTT
1 TATTT--ATTTTCTTATTTTTTTT
* *
17876658 TATTTATTTTTTGTATTTTTTTG
1 TATTTATTTTCT-TATTTTTTTT
17876681 TATTTA
1 TATTTA
17876687 CTTAATATTG
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 5 0.12
23 18 0.43
24 11 0.26
25 8 0.19
ACGTcount: A:0.17, C:0.05, G:0.05, T:0.72
Consensus pattern (22 bp):
TATTTATTTTCTTATTTTTTTT
Found at i:17887111 original size:44 final size:44
Alignment explanation
Indices: 17887052--17888357 Score: 1806
Period size: 44 Copynumber: 29.7 Consensus size: 44
17887042 CGGTGACATC
* * * * * *
17887052 TGGCATCTCTGTATTGACGGAGAGCAGATCAAATATAGCAAATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * * *
17887096 TGGAGTCTCTATATTGACAGAGAGTAGATCGAAGAT-GACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG-CAGATT
* * *
17887140 TGGCGTCTCTGTATTGTCAGAGAGCAAAACAAAGATAGCAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * * * * *
17887184 TTGCATCTCTGTATTGACAGAGAGTAGATCGAAAAT-GATAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG-CAGATT
* * * *
17887228 TGGCGTCTCTGTATTATTAGAGAGGAGGTCGAAGATAGCAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* *
17887272 TGGCGTCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCAAATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
** * *
17887316 TAACGTCTTTGTATTGTCAGAGAGCAGATCGAAGATAACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* *
17887360 TGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* *
17887404 TGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* *
17887448 TGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* *
17887492 TGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * *
17887536 TGGCGTCTCTGTATTATCAGAGAGCAGGTCAAAGATAGCAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * * *
17887580 TGGTGCCTCTGTATTGCCAGAGAGCAGATCGAAGATAGTAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
*
17887624 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * *
17887668 TGGCGTCTCTGTATTATCAGAGAGCAGGTCAAAGATAGCAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * * *
17887712 TGGTGCCTCTGTATTGCCAGAGAGCAGATCGAAGATAGTAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
*
17887756 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * *
17887800 TGGCGTCTCTGTATTATCAGAGAGCAGGTCAAAGATAGCAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * * *
17887844 TGGTGCCTCTGTATTGCCAGAGAGCAGATCGAAGATAGTAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
*
17887888 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * *
17887932 TGGCGTCTCTGTATTATCAGAGAGCAGGTCAAAGATAGCAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * * *
17887976 TGGTGCCTCTGTATTGCCAGAGAGCAGATCGAAGATAGTAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
*
17888020 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* *
17888064 TGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * *
17888108 TGGCGTCTCTGTATTGTCAGAAAACAGGTCGAAGATAGCAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* *
17888152 TGGCGTCTCTGTATTGCCAGAGAGCAGGTCGAAGATAGCAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * *
17888196 TGGCGTCTTTGTATTGTCAGAGAGCAAATCGAAGATAACAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * *
17888240 TGGCGTCTCTGTATTATCAGAGAGCAGGTCAAAGATAGCAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
* * * *
17888284 TGGTGCCTCTGTATTGCCAGAGAGCAGATCGAAGATAGTAGATT
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
17888328 TGGCGTCTCTGTATTGTCAGAGAGCAGATC
1 TGGCGTCTCTGTATTGTCAGAGAGCAGATC
17888358 AAACATTTCG
Statistics
Matches: 1114, Mismatches: 144, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
43 2 0.00
44 1110 1.00
45 2 0.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (44 bp):
TGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATT
Found at i:17889758 original size:12 final size:12
Alignment explanation
Indices: 17889704--17889782 Score: 52
Period size: 12 Copynumber: 6.4 Consensus size: 12
17889694 TAATTATAGG
*
17889704 TTATTTTATCATA
1 TTATTTTAT-ATT
17889717 TTA-TTTATATT
1 TTATTTTATATT
* *
17889728 TCATTATATATTT
1 TTATTTTATA-TT
17889741 TATATTTTATATT
1 T-TATTTTATATT
** *
17889754 TTATTACATATC
1 TTATTTTATATT
*
17889766 CTATTTTATATT
1 TTATTTTATATT
*
17889778 ATATT
1 TTATT
17889783 ATTCCCTATA
Statistics
Matches: 50, Mismatches: 13, Indels: 7
0.71 0.19 0.10
Matches are distributed among these distances:
11 4 0.08
12 30 0.60
13 9 0.18
14 7 0.14
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.63
Consensus pattern (12 bp):
TTATTTTATATT
Found at i:17900597 original size:60 final size:60
Alignment explanation
Indices: 17900496--17900608 Score: 192
Period size: 60 Copynumber: 1.9 Consensus size: 60
17900486 CGTTGGTAAT
* *
17900496 ATACCAGCTTAGGGGTGAATGGGAGACAAGAGACCCTAAATTGATTAATTATCGAATGGA
1 ATACCAGCTTAGGGGTGAATGGAAGACAAGAGACCCCAAATTGATTAATTATCGAATGGA
17900556 ATACCAGCTTAGGGGTGAATGGAAGACAAG-GAACCCCAAATTGATTAATTATC
1 ATACCAGCTTAGGGGTGAATGGAAGACAAGAG-ACCCCAAATTGATTAATTATC
17900609 AAAAGGTAGT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
59 1 0.02
60 49 0.98
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (60 bp):
ATACCAGCTTAGGGGTGAATGGAAGACAAGAGACCCCAAATTGATTAATTATCGAATGGA
Found at i:17903034 original size:44 final size:44
Alignment explanation
Indices: 17902978--17903841 Score: 1113
Period size: 44 Copynumber: 19.6 Consensus size: 44
17902968 ACATCTGGAA
* * * *
17902978 TCTCTGTATTGACGGAGAGCAGATCAAAGATAGCAGATTTGGTG
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCG
* * * * *
17903022 TCTCTATTTTGACAGAGAGTAGATCGAAGAT-GACAGATTTGGAG
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAG-CAGATTTGGCG
* * * * *
17903066 TCTCTGTTTTGTCAGAGAGCAAATCAAATATAGCAGATTTGGCA
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCG
* * * *
17903110 TCTCTGTATTGACAGAGAGTAGATCGAAGATGGCAGATTTGGCA
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCG
* * *
17903154 ACTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATTTGACG
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCG
** *
17903198 TCTCTGTATTGTTTGAGAGCAGGTCGAAGATAGCAGATTTGGCG
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCG
* *
17903242 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATTTGACG
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCG
** *
17903286 TCTCTGTATTGTTTGAGAGCAGGTCGAAGATAGCAGATTTGGCG
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCG
* *
17903330 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATTTGACG
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCG
** *
17903374 TCTCTGTATTGTTTGAGAGCAGGTCGAAGATAGCAGATTTGGCG
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCG
* *
17903418 TCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCAGATTTAGCG
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCG
* * *
17903462 TCTTTGTATTGTCAGAGAGCAGATCGAAGATAACAGATTTGGCA
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCG
* * *
17903506 TCTCTGTATTTTCAGAGAGCAGATCGAAGAT-GATAGATTTGGCA
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAG-CAGATTTGGCG
* *
17903550 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATTTGGCA
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCG
* * *
17903594 TCTCTGTATTGCCAGAAAGCAGGTCGAAGATAGCAGATTTGGCG
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCG
* *
17903638 TCTCTGTATTGCCAGAGAGCAGATCGAAGATAGCAGATTTAGCG
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCG
* * *
17903682 TCTTTGTATTGTCAGAGAGCAGATCGAAGATAACAGATTTGGCA
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCG
* * * * *
17903726 TCTCTGTATTGTCAGAGTGTAGGTC-AAGGATAGCAAATTTGGTG
1 TCTCTGTATTGTCAGAGAGCAGATCGAA-GATAGCAGATTTGGCG
* * * * *
17903770 TCTCAGTATTGCCAGAAAGTAGATCGAAGATAGTAGATTTGGCG
1 TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCG
*
17903814 TCACTGTATTGTCAGAGAGCAGATCGAA
1 TCTCTGTATTGTCAGAGAGCAGATCGAA
17903842 CATTTCGGCT
Statistics
Matches: 709, Mismatches: 105, Indels: 12
0.86 0.13 0.01
Matches are distributed among these distances:
43 3 0.00
44 703 0.99
45 3 0.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (44 bp):
TCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCG
Found at i:17905459 original size:17 final size:19
Alignment explanation
Indices: 17905440--17905482 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
17905430 AATTATAGGT
*
17905440 TATTTTATCATATTATTTA
1 TATTTCATCATATTATTTA
* *
17905459 TATTTCATTATATTTTTTA
1 TATTTCATCATATTATTTA
17905478 TATTT
1 TATTT
17905483 TATATTTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (19 bp):
TATTTCATCATATTATTTA
Found at i:17905506 original size:17 final size:17
Alignment explanation
Indices: 17905484--17905516 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
17905474 TTTATATTTT
17905484 ATATTTTATTACATATC
1 ATATTTTATTACATATC
*
17905501 ATATTTTATTATATAT
1 ATATTTTATTACATAT
17905517 TATTTCCTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (17 bp):
ATATTTTATTACATATC
Found at i:17908918 original size:38 final size:38
Alignment explanation
Indices: 17908862--17908940 Score: 131
Period size: 38 Copynumber: 2.1 Consensus size: 38
17908852 AAAGTAAGGA
*
17908862 AAGAAAAGAGGAAGATTGAGGACGACCGAGATGACTTG
1 AAGAAAAGAGGAAAATTGAGGACGACCGAGATGACTTG
* *
17908900 AAGAAAAGAGGAAAATTGAGGACGACTGTGATGACTTG
1 AAGAAAAGAGGAAAATTGAGGACGACCGAGATGACTTG
17908938 AAG
1 AAG
17908941 TCCCAGTACA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.43, C:0.09, G:0.33, T:0.15
Consensus pattern (38 bp):
AAGAAAAGAGGAAAATTGAGGACGACCGAGATGACTTG
Found at i:17917563 original size:44 final size:44
Alignment explanation
Indices: 17917514--17918729 Score: 1290
Period size: 44 Copynumber: 27.6 Consensus size: 44
17917504 ACATCTGGCA
* * * *
17917514 TCTCTGTATTGATGGAGAGCAGATCAAAGATAGCAGATTTGGAG
1 TCTCTGTATTGCTAGAGAGCAGATCGAAGATAGCAGATTTGGTG
*
17917558 TCTCTGTATTGAC-AGAGAGCAGATCGAAGAT-GACAGATTTGGCG
1 TCTCTGTATTG-CTAGAGAGCAGATCGAAGATAG-CAGATTTGGTG
* * * **
17917602 TCTCTGTATT-TTCAGAGAGCAAATCAAAGATAGCAGATTTGGCA
1 TCTCTGTATTGCT-AGAGAGCAGATCGAAGATAGCAGATTTGGTG
* ** * * **
17917646 TCTCTGTATTGAC-AGAGGGTTGATCGAAAAT-GATAGATTTGGCA
1 TCTCTGTATTG-CTAGAGAGCAGATCGAAGATAG-CAGATTTGGTG
* * * * *
17917690 TCTCTGTATTG-TCAAAGAGTAGATCGAAGATAACAAATTTGACT-
1 TCTCTGTATTGCT-AGAGAGCAGATCGAAGATAGCAGATTTG-GTG
* * * **
17917734 TCCCTGTATT-ATCAGAGAGCAGGTCGAAGATAGCAGATTTGGCA
1 TCTCTGTATTGCT-AGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * * **
17917778 TCTTTGTATTGCCAGAGAGCAGATCGAAGATAGCAGATTTAGCA
1 TCTCTGTATTGCTAGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * * **
17917822 TCTTTGTATTG-TCAGAGAGCAGATCGAAGATAACAGACTTGGCA
1 TCTCTGTATTGCT-AGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * **
17917866 TCTCTGTATTG-TCAGAGAGCAGAACGAAGAT-GACAGATTTAGCA
1 TCTCTGTATTGCT-AGAGAGCAGATCGAAGATAG-CAGATTTGGTG
* * *
17917910 TCTCTGTATTG-TCAGAGAGCAGATCAAAGATAACAGATTTGGCG
1 TCTCTGTATTGCT-AGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * * * * *
17917954 TCTCAGTATTG-TCAGAAAGCAGGTCAAAAATAGCAGATTTGGCG
1 TCTCTGTATTGCT-AGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * *
17917998 TCTCTGTATTGCCAGAGAGCAAATCGAAGATAGCAGATTTAGTG
1 TCTCTGTATTGCTAGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * *
17918042 TCTTTGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTG
1 TCTCTGTATTGCTAGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * *
17918086 TCTCTGTATTGCCAGAGAGCAAATCGAAGATAGCAGATTTAGTG
1 TCTCTGTATTGCTAGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * *
17918130 TCTTTGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTG
1 TCTCTGTATTGCTAGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * *
17918174 TCTCTGTATTGCCAGAGAGCAAATCGAAGATAGCAGATTTAGTG
1 TCTCTGTATTGCTAGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * *
17918218 TCTTTGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTG
1 TCTCTGTATTGCTAGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * *
17918262 TCTCTGTATTGCCAGAGAGCAAATCGAAGATAGCAGATTTAGTG
1 TCTCTGTATTGCTAGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * *
17918306 TCTTTGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTG
1 TCTCTGTATTGCTAGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * *
17918350 TCTCTGTATTGCCAGAGAGCAAATCGAAGATAGCAGATTTAGTG
1 TCTCTGTATTGCTAGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * *
17918394 TCTTTGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTG
1 TCTCTGTATTGCTAGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * *
17918438 TCTCTGTATTGCCAGAGAGCAAATCGAAGATAGCAGATTTAGTG
1 TCTCTGTATTGCTAGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * *
17918482 TCTTTGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTG
1 TCTCTGTATTGCTAGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * *
17918526 TCTCTGTATTGCCAGAGAGCAAATCGAAGATAGCAGATTTAGTG
1 TCTCTGTATTGCTAGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * *
17918570 TCTTTGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTG
1 TCTCTGTATTGCTAGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * *
17918614 TCTCTGTATTGCCAGAGAGCAAATCGAAGATAGCAGATTTGGCG
1 TCTCTGTATTGCTAGAGAGCAGATCGAAGATAGCAGATTTGGTG
* * ** *
17918658 TCTCTATATTGCTAGAGAGCAAATCGAAGATAGTTGATTTGGCG
1 TCTCTGTATTGCTAGAGAGCAGATCGAAGATAGCAGATTTGGTG
* *
17918702 TCTTTGTATT-TTCAGAGAGCAGATCGAA
1 TCTCTGTATTGCT-AGAGAGCAGATCGAA
17918730 CATTTCGTCT
Statistics
Matches: 993, Mismatches: 159, Indels: 40
0.83 0.13 0.03
Matches are distributed among these distances:
43 3 0.00
44 989 1.00
45 1 0.00
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (44 bp):
TCTCTGTATTGCTAGAGAGCAGATCGAAGATAGCAGATTTGGTG
Found at i:17917671 original size:88 final size:88
Alignment explanation
Indices: 17917518--17918729 Score: 1559
Period size: 88 Copynumber: 13.8 Consensus size: 88
17917508 CTGGCATCTC
* * * * * * *
17917518 TGTATTGATGGAGAGCAGATCAAAGATAGCAGATTTGGAGTCTCTGTATTGACAGAGAGCAGATC
1 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
* * *
17917583 GAAGAT-GACAGATTTGGCGTCTC
66 GAAGATAG-CAGATTTAGTGTCTT
* * * ** * * ***
17917606 TGTATT-TTCAGAGAGCAAATCAAAGATAGCAGATTTGGCATCTCTGTATTGACAGAGGGTTGAT
1 TGTATTGTT-AGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAAT
* * * ** *
17917670 CGAAAAT-GATAGATTTGGCATCTC
65 CGAAGATAG-CAGATTTAGTGTCTT
* * * * * * ** **
17917694 TGTATTGTCAAAGAGTAGATCGAAGATAACAAATTTGACT-TCCCTGTATTATCAGAGAGCAGGT
1 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTG-GTGTCTCTGTATTGCCAGAGAGCAAAT
* **
17917758 CGAAGATAGCAGATTTGGCATCTT
65 CGAAGATAGCAGATTTAGTGTCTT
** * * ** * * *
17917782 TGTATTGCCAGAGAGCAGATCGAAGATAGCAGATTTAGCATCTTTGTATTGTCAGAGAGCAGATC
1 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
* * * ** *
17917847 GAAGATAACAGACTTGGCATCTC
66 GAAGATAGCAGATTTAGTGTCTT
* * * * ** * *
17917870 TGTATTGTCAGAGAGCAGAACGAAGATGACAGATTTAGCATCTCTGTATTGTCAGAGAGCAGATC
1 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
* * * * *
17917935 AAAGATAACAGATTTGGCGTCTC
66 GAAGATAGCAGATTTAGTGTCTT
* * * * * * * *
17917958 AGTATTGTCAGAAAGCAGGTCAAAAATAGCAGATTTGGCGTCTCTGTATTGCCAGAGAGCAAATC
1 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
17918023 GAAGATAGCAGATTTAGTGTCTT
66 GAAGATAGCAGATTTAGTGTCTT
17918046 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
1 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
17918111 GAAGATAGCAGATTTAGTGTCTT
66 GAAGATAGCAGATTTAGTGTCTT
17918134 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
1 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
17918199 GAAGATAGCAGATTTAGTGTCTT
66 GAAGATAGCAGATTTAGTGTCTT
17918222 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
1 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
17918287 GAAGATAGCAGATTTAGTGTCTT
66 GAAGATAGCAGATTTAGTGTCTT
17918310 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
1 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
17918375 GAAGATAGCAGATTTAGTGTCTT
66 GAAGATAGCAGATTTAGTGTCTT
17918398 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
1 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
17918463 GAAGATAGCAGATTTAGTGTCTT
66 GAAGATAGCAGATTTAGTGTCTT
17918486 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
1 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
17918551 GAAGATAGCAGATTTAGTGTCTT
66 GAAGATAGCAGATTTAGTGTCTT
17918574 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
1 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
* * *
17918639 GAAGATAGCAGATTTGGCGTCTC
66 GAAGATAGCAGATTTAGTGTCTT
* * * *** * * ** *
17918662 TATATTGCTAGAGAGCAAATCGAAGATAGTTGATTTGGCGTCTTTGTATTTTCAGAGAGCAGATC
1 TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
17918727 GAA
66 GAA
17918730 CATTTCGTCT
Statistics
Matches: 1027, Mismatches: 92, Indels: 10
0.91 0.08 0.01
Matches are distributed among these distances:
87 1 0.00
88 1024 1.00
89 2 0.00
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (88 bp):
TGTATTGTTAGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTATTGCCAGAGAGCAAATC
GAAGATAGCAGATTTAGTGTCTT
Found at i:17919637 original size:87 final size:87
Alignment explanation
Indices: 17919541--17920206 Score: 1332
Period size: 87 Copynumber: 7.7 Consensus size: 87
17919531 TAGTTCTTTA
17919541 CCTTTTCTTCTTGTTGCAAACATATACAAATGTCATTAAAATAAAAGGAAAGGGAGTTTACTGTT
1 CCTTTTCTTCTTGTTGCAAACATATACAAATGTCATTAAAATAAAAGGAAAGGGAGTTTACTGTT
17919606 GGATTTACGCAAAAAATGGAAG
66 GGATTTACGCAAAAAATGGAAG
17919628 CCTTTTCTTCTTGTTGCAAACATATACAAATGTCATTAAAATAAAAGGAAAGGGAGTTTACTGTT
1 CCTTTTCTTCTTGTTGCAAACATATACAAATGTCATTAAAATAAAAGGAAAGGGAGTTTACTGTT
17919693 GGATTTACGCAAAAAATGGAAG
66 GGATTTACGCAAAAAATGGAAG
17919715 CCTTTTCTTCTTGTTGCAAACATATACAAATGTCATTAAAATAAAAGGAAAGGGAGTTTACTGTT
1 CCTTTTCTTCTTGTTGCAAACATATACAAATGTCATTAAAATAAAAGGAAAGGGAGTTTACTGTT
17919780 GGATTTACGCAAAAAATGGAAG
66 GGATTTACGCAAAAAATGGAAG
17919802 CCTTTTCTTCTTGTTGCAAACATATACAAATGTCATTAAAATAAAAGGAAAGGGAGTTTACTGTT
1 CCTTTTCTTCTTGTTGCAAACATATACAAATGTCATTAAAATAAAAGGAAAGGGAGTTTACTGTT
17919867 GGATTTACGCAAAAAATGGAAG
66 GGATTTACGCAAAAAATGGAAG
17919889 CCTTTTCTTCTTGTTGCAAACATATACAAATGTCATTAAAATAAAAGGAAAGGGAGTTTACTGTT
1 CCTTTTCTTCTTGTTGCAAACATATACAAATGTCATTAAAATAAAAGGAAAGGGAGTTTACTGTT
17919954 GGATTTACGCAAAAAATGGAAG
66 GGATTTACGCAAAAAATGGAAG
17919976 CCTTTTCTTCTTGTTGCAAACATATACAAATGTCATTAAAATAAAAGGAAAGGGAGTTTACTGTT
1 CCTTTTCTTCTTGTTGCAAACATATACAAATGTCATTAAAATAAAAGGAAAGGGAGTTTACTGTT
17920041 GGATTTACGCAAAAAATGGAAG
66 GGATTTACGCAAAAAATGGAAG
17920063 CCTTTTCTTCTTGTTGCAAACATATACAAATGTCATTAAAATAAAAGGAAAGGGAGTTTACTGTT
1 CCTTTTCTTCTTGTTGCAAACATATACAAATGTCATTAAAATAAAAGGAAAGGGAGTTTACTGTT
17920128 GGATTTACGCAAAAAATGGAAG
66 GGATTTACGCAAAAAATGGAAG
17920150 CCTTTTCTTCTTGTTGCAAACATATACAAATGTCATTAAAATAAAAGGAAAGGGAGT
1 CCTTTTCTTCTTGTTGCAAACATATACAAATGTCATTAAAATAAAAGGAAAGGGAGT
17920207 ATTTATATTT
Statistics
Matches: 579, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 579 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (87 bp):
CCTTTTCTTCTTGTTGCAAACATATACAAATGTCATTAAAATAAAAGGAAAGGGAGTTTACTGTT
GGATTTACGCAAAAAATGGAAG
Found at i:17924370 original size:3 final size:3
Alignment explanation
Indices: 17924362--17924449 Score: 62
Period size: 3 Copynumber: 29.3 Consensus size: 3
17924352 AAAATTGTAC
*
17924362 ATA ATA ATAA ATT ATAA ATA ATAA ATA ATA AT- ATA AT- ATA ATA TATA
1 ATA ATA AT-A ATA AT-A ATA AT-A ATA ATA ATA ATA ATA ATA ATA -ATA
*
17924409 ATA A-A A-A ATA AAA ATA AT- ATA ATGA ATA AT- ATA TATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA ATA A
17924450 AATGATATAA
Statistics
Matches: 70, Mismatches: 4, Indels: 22
0.73 0.04 0.23
Matches are distributed among these distances:
2 12 0.17
3 41 0.59
4 17 0.24
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:17924380 original size:7 final size:7
Alignment explanation
Indices: 17924364--17924450 Score: 81
Period size: 7 Copynumber: 12.3 Consensus size: 7
17924354 AATTGTACAT
17924364 AATAATA
1 AATAATA
*
17924371 AATTATA
1 AATAATA
17924378 AATAATA
1 AATAATA
17924385 AATAAT-
1 AATAATA
17924391 AAT-ATA
1 AATAATA
17924397 ATATAATA
1 A-ATAATA
*
17924405 TATAATA
1 AATAATA
*
17924412 AAAAATA
1 AATAATA
17924419 AA-AATA
1 AATAATA
*
17924425 ATATAATG
1 A-ATAATA
17924433 AATAATA
1 AATAATA
17924440 TATATAATA
1 -A-ATAATA
17924449 AA
1 AA
17924451 ATGATATAAC
Statistics
Matches: 66, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
5 2 0.03
6 9 0.14
7 40 0.61
8 9 0.14
9 6 0.09
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (7 bp):
AATAATA
Found at i:17924494 original size:57 final size:55
Alignment explanation
Indices: 17924377--17924523 Score: 135
Period size: 57 Copynumber: 2.7 Consensus size: 55
17924367 AATAAATTAT
* *
17924377 AAATAATA-A-ATAATAATATAATATAATATATAATAAAAAATAAAAATAATATA
1 AAATAATATATATAATAAAATAATATAACATATAATAAAAAATAAAAATAATATA
* * ** *
17924430 ATGAATAATATATATAATAAAATGATATAACATATTATAAAGCATATAAATAATATGTA
1 A--AATAATATATATAATAAAATAATATAACATATAATAAAAAATAAAAATAATA--TA
*
17924489 AAATAA-A-ATATGAA-AAAATAATAT-ATATATAATAA
1 AAATAATATATAT-AATAAAATAATATAACATATAATAA
17924524 TTTTTTATAT
Statistics
Matches: 77, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
53 1 0.01
54 9 0.12
55 20 0.26
56 4 0.05
57 40 0.52
59 3 0.04
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.31
Consensus pattern (55 bp):
AAATAATATATATAATAAAATAATATAACATATAATAAAAAATAAAAATAATATA
Found at i:17926116 original size:44 final size:44
Alignment explanation
Indices: 17926068--17927522 Score: 1979
Period size: 44 Copynumber: 33.4 Consensus size: 44
17926058 CCCATGAAGC
* * * *
17926068 ACAGAGATGCTAAATCTGCTATCTTTGATCTG-TCCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCT-CTCTGTCAAT
** * *
17926112 ACAGAGAAACCAAATCTGCTATCTTCGATATGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
* * * * * *
17926156 ACATAGACGCCAAATCTGCTATATTCGGTCTGCT-TCGGT--AC
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
* * * * * * * ** *
17926197 A-AGA-ATGTCAGATCTACTATCTTCGATTTGTTCCCCATCCAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
* *
17926239 ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
* * * * * *
17926283 ACAGAGACACCAAATCTACAATCTTTGATCTACTCCCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
*
17926327 ACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
* * * * * *
17926371 ACAGAGACACCAAATCTACTATCTTTGATCTGCTCCCCGTCGAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
*
17926415 ACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
*
17926459 ACAAAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
* * * * *
17926503 ACAGAGACACCAAATCTACTATCTTTGATCTGCT-TCCCGTCGAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCT-CTGTCAAT
* * *
17926547 ACAGAGACGCCGAATCTGCTATCTTCGATCTGCTTTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
*
17926591 ACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
* * *
17926635 ACAAAGACG----A----CTATCTTTGATCTGCCCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
* * *
17926671 ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTTTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
*
17926715 ACAAAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
*
17926759 ACAAAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
*
17926803 ACAAAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
*
17926847 ACAAAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
*
17926891 ACAAAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
*
17926935 ACAAAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
*
17926979 ACAAAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
*
17927023 ACAAAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
*
17927067 ACAAAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
*
17927111 ACAAAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
*
17927155 ACAAAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
*
17927199 ACAAAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
*
17927243 ACAAAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
* * * * *
17927287 ACAGAGACACCAAATCTACTATCTTTGATCTGCT-TCCCGTCGAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCT-CTGTCAAT
* * *
17927331 ACAGAGACGCCGAATCTGCTATCTTCGATCTGCTTTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
* * * *
17927375 ACAGAGACGCCAAATCTGCTATCTTCAATCTACCCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
* * * *
17927419 ACAGAGACGCCAAATGTGCTATCTTCGATCTACTCTCTGTTAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
* *
17927463 ACAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGTCAAT
1 ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
*
17927507 ACAGAGACGTCAAATC
1 ACAGAGACGCCAAATC
17927523 CAATATCGGT
Statistics
Matches: 1278, Mismatches: 115, Indels: 36
0.89 0.08 0.03
Matches are distributed among these distances:
36 31 0.02
39 20 0.02
40 6 0.00
41 2 0.00
42 2 0.00
43 9 0.01
44 1205 0.94
45 3 0.00
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (44 bp):
ACAGAGACGCCAAATCTTCTATCTTCGATCTGCTCTCTGTCAAT
Found at i:17939571 original size:3 final size:3
Alignment explanation
Indices: 17939563--17939650 Score: 62
Period size: 3 Copynumber: 29.3 Consensus size: 3
17939553 AAAATTGTAC
*
17939563 ATA ATA ATAA ATT ATAA ATA ATAA ATA ATA AT- ATA AT- ATA ATA TATA
1 ATA ATA AT-A ATA AT-A ATA AT-A ATA ATA ATA ATA ATA ATA ATA -ATA
*
17939610 ATA A-A A-A ATA AAA ATA AT- ATA ATGA ATA AT- ATA TATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA ATA A
17939651 AATGATATAA
Statistics
Matches: 70, Mismatches: 4, Indels: 22
0.73 0.04 0.23
Matches are distributed among these distances:
2 12 0.17
3 41 0.59
4 17 0.24
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:17939581 original size:7 final size:7
Alignment explanation
Indices: 17939565--17939651 Score: 81
Period size: 7 Copynumber: 12.3 Consensus size: 7
17939555 AATTGTACAT
17939565 AATAATA
1 AATAATA
*
17939572 AATTATA
1 AATAATA
17939579 AATAATA
1 AATAATA
17939586 AATAAT-
1 AATAATA
17939592 AAT-ATA
1 AATAATA
17939598 ATATAATA
1 A-ATAATA
*
17939606 TATAATA
1 AATAATA
*
17939613 AAAAATA
1 AATAATA
17939620 AA-AATA
1 AATAATA
*
17939626 ATATAATG
1 A-ATAATA
17939634 AATAATA
1 AATAATA
17939641 TATATAATA
1 -A-ATAATA
17939650 AA
1 AA
17939652 ATGATATAAC
Statistics
Matches: 66, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
5 2 0.03
6 9 0.14
7 40 0.61
8 9 0.14
9 6 0.09
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (7 bp):
AATAATA
Found at i:17939695 original size:57 final size:55
Alignment explanation
Indices: 17939578--17939724 Score: 135
Period size: 57 Copynumber: 2.7 Consensus size: 55
17939568 AATAAATTAT
* *
17939578 AAATAATA-A-ATAATAATATAATATAATATATAATAAAAAATAAAAATAATATA
1 AAATAATATATATAATAAAATAATATAACATATAATAAAAAATAAAAATAATATA
* * ** *
17939631 ATGAATAATATATATAATAAAATGATATAACATATTATAAAGCATATAAATAATATGTA
1 A--AATAATATATATAATAAAATAATATAACATATAATAAAAAATAAAAATAATA--TA
*
17939690 AAATAA-A-ATATGAA-AAAATAATAT-ATATATAATAA
1 AAATAATATATAT-AATAAAATAATATAACATATAATAA
17939725 TTTTTTATAT
Statistics
Matches: 77, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
53 1 0.01
54 9 0.12
55 20 0.26
56 4 0.05
57 40 0.52
59 3 0.04
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.31
Consensus pattern (55 bp):
AAATAATATATATAATAAAATAATATAACATATAATAAAAAATAAAAATAATATA
Found at i:17949829 original size:19 final size:19
Alignment explanation
Indices: 17949801--17949839 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
17949791 AGAGTGAAAG
17949801 AAACGAG-AAATAGGCCAA
1 AAACGAGAAAATAGGCCAA
*
17949819 AAACGGAGAAAATGGGCCAA
1 AAAC-GAGAAAATAGGCCAA
17949839 A
1 A
17949840 GTACGAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 3 0.17
20 11 0.61
ACGTcount: A:0.54, C:0.15, G:0.26, T:0.05
Consensus pattern (19 bp):
AAACGAGAAAATAGGCCAA
Found at i:17951640 original size:35 final size:35
Alignment explanation
Indices: 17951594--17951664 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
17951584 AATAATAACA
17951594 TGGCATGCAGTAAATAGTAACAGTCAAACATGCAT
1 TGGCATGCAGTAAATAGTAACAGTCAAACATGCAT
17951629 TGGCATGCAGTAAATAGTAACAGTCAAACATGCAT
1 TGGCATGCAGTAAATAGTAACAGTCAAACATGCAT
17951664 T
1 T
17951665 CAGGTCAACC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (35 bp):
TGGCATGCAGTAAATAGTAACAGTCAAACATGCAT
Found at i:17960072 original size:38 final size:38
Alignment explanation
Indices: 17960021--17960096 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
17960011 GAAATGGGTG
17960021 TACTTTTAGTTGTTATATGTGCTTAAGGTGATGAGATA
1 TACTTTTAGTTGTTATATGTGCTTAAGGTGATGAGATA
17960059 TACTTTTAGTTGTTATATGTGCTTAAGGTGATGAGATA
1 TACTTTTAGTTGTTATATGTGCTTAAGGTGATGAGATA
17960097 AAATAACTAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.26, C:0.05, G:0.24, T:0.45
Consensus pattern (38 bp):
TACTTTTAGTTGTTATATGTGCTTAAGGTGATGAGATA
Found at i:17967701 original size:24 final size:27
Alignment explanation
Indices: 17967651--17967701 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 27
17967641 AAGCTTGGTA
**
17967651 TTGATAATTCGGTTATGTTTATTGTGC
1 TTGATAATTCGGTTATGTTTAAAGTGC
17967678 TTGA-AATTC-GTTA-GTTTAAAGTGC
1 TTGATAATTCGGTTATGTTTAAAGTGC
17967702 CTAGTATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 9 0.41
25 4 0.18
26 5 0.23
27 4 0.18
ACGTcount: A:0.24, C:0.08, G:0.22, T:0.47
Consensus pattern (27 bp):
TTGATAATTCGGTTATGTTTAAAGTGC
Found at i:17978289 original size:45 final size:45
Alignment explanation
Indices: 17978120--17978293 Score: 161
Period size: 45 Copynumber: 3.9 Consensus size: 45
17978110 AACTATCAAA
* * * * * * *
17978120 TGATGCCATAACGTCTTTTAGCTATGGTCTTAGTCCTATTTA-CC
1 TGATGCCATAGCATCTTTCAACTATGGTCTTACTCATTTTTATCC
* * * * *** *
17978164 ATGATGCCATAGCATCTTTCAGCCATGGTCTTACTAACTTCCGTCA
1 -TGATGCCATAGCATCTTTCAACTATGGTCTTACTCATTTTTATCC
* * **
17978210 TGGTTCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTTATCC
1 TGATGCCATAGCATCTTTCAACTATGGTCTTACTCATTTTTATCC
17978255 TGATGCCATAGCATCTTTCAACTATGGTCTTACTCATTT
1 TGATGCCATAGCATCTTTCAACTATGGTCTTACTCATTT
17978294 GAATCAAATT
Statistics
Matches: 99, Mismatches: 29, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
45 98 0.99
46 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.40
Consensus pattern (45 bp):
TGATGCCATAGCATCTTTCAACTATGGTCTTACTCATTTTTATCC
Found at i:17983238 original size:68 final size:68
Alignment explanation
Indices: 17983154--17983289 Score: 272
Period size: 68 Copynumber: 2.0 Consensus size: 68
17983144 CATAATTATT
17983154 ATAAAACCATCCAAAATAAAATGTCCAATGTCCAATTGATAAACCATAAATTATACATATTTTTA
1 ATAAAACCATCCAAAATAAAATGTCCAATGTCCAATTGATAAACCATAAATTATACATATTTTTA
17983219 CCC
66 CCC
17983222 ATAAAACCATCCAAAATAAAATGTCCAATGTCCAATTGATAAACCATAAATTATACATATTTTTA
1 ATAAAACCATCCAAAATAAAATGTCCAATGTCCAATTGATAAACCATAAATTATACATATTTTTA
17983287 CCC
66 CCC
17983290 CATGTTTGAT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.46, C:0.21, G:0.04, T:0.29
Consensus pattern (68 bp):
ATAAAACCATCCAAAATAAAATGTCCAATGTCCAATTGATAAACCATAAATTATACATATTTTTA
CCC
Found at i:17987085 original size:11 final size:11
Alignment explanation
Indices: 17987069--17987094 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
17987059 TCATAGACCT
17987069 TAAAATAATCA
1 TAAAATAATCA
17987080 TAAAATAATCA
1 TAAAATAATCA
17987091 TAAA
1 TAAA
17987095 GTCTCAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (11 bp):
TAAAATAATCA
Found at i:17990523 original size:40 final size:40
Alignment explanation
Indices: 17990466--17990730 Score: 374
Period size: 40 Copynumber: 6.7 Consensus size: 40
17990456 CTAACGGGGT
* * * *
17990466 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
17990506 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
17990546 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
17990586 TAAGTCCTGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
17990626 TAAGCCCCAAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * * *
17990666 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* *
17990706 TAAGACCCGAAGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
17990731 GGTTATATCC
Statistics
Matches: 207, Mismatches: 16, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 11 0.05
40 196 0.95
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:17994875 original size:93 final size:93
Alignment explanation
Indices: 17994716--17994887 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
17994706 GCCCATAAGC
*
17994716 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
17994781 CGAGTTCGGATGCCTAGTTACATTTCAT
66 CGAGTTCGGATGCCTAGTTACATTTCAT
** *
17994809 GAACTCGGACTCAACTCAACGAG-TTTGGACTTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
17994873 ACGAGTTCGGATGCC
65 ACGAGTTCGGATGCC
17994888 CAAATATCCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 3 0.04
93 71 0.96
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAT
Found at i:17994879 original size:46 final size:46
Alignment explanation
Indices: 17994708--17994879 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
17994698 TGTAACCTGC
* * *
17994708 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTAGGACTTTCGCAT
* * *
17994754 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTAGGA---CT--TTCGCAT
* * *
17994804 --TTCA-TGAACTCGGACTCAACTCAACGAGTTTGGACTTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTAGGACTTTCGCAT
17994847 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
17994880 CGGATGCCCA
Statistics
Matches: 103, Mismatches: 13, Indels: 20
0.76 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 5 0.05
46 55 0.53
47 29 0.28
48 1 0.01
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTAGGACTTTCGCAT
Found at i:18000368 original size:24 final size:24
Alignment explanation
Indices: 18000341--18000407 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 24
18000331 GAAATTTCCA
*
18000341 GGCACTATGTGTGCG-GTTTAGAAT
1 GGCACTATGTGTGCGAATTT-GAAT
* *
18000365 GGCACTAAGTGTGCGAATTTGATT
1 GGCACTATGTGTGCGAATTTGAAT
*
18000389 AGCACTATGTGTGCGAATT
1 GGCACTATGTGTGCGAATT
18000408 CGGTTGACAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 34 0.92
25 3 0.08
ACGTcount: A:0.24, C:0.13, G:0.30, T:0.33
Consensus pattern (24 bp):
GGCACTATGTGTGCGAATTTGAAT
Found at i:18015273 original size:13 final size:13
Alignment explanation
Indices: 18015255--18015282 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
18015245 TAGTTTCAAG
18015255 AACGATTAATTAT
1 AACGATTAATTAT
18015268 AACGATTAATTAT
1 AACGATTAATTAT
18015281 AA
1 AA
18015283 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (13 bp):
AACGATTAATTAT
Found at i:18023573 original size:20 final size:20
Alignment explanation
Indices: 18023548--18023598 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
18023538 ATTTTAAGAA
*
18023548 ACATGATATGTATGATCTGC
1 ACATGATATGTATGATATGC
18023568 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18023588 ACATGAGATGT
1 ACATGATATGT
18023599 TCATAAATGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:18023700 original size:24 final size:24
Alignment explanation
Indices: 18023643--18023748 Score: 160
Period size: 24 Copynumber: 4.4 Consensus size: 24
18023633 GGAGGAAGTG
18023643 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
18023667 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
18023690 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
18023714 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
18023738 TAAAAGAGGCT
1 CAAAAG-GGCT
18023749 AGGCCTCCAG
Statistics
Matches: 76, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
23 22 0.29
24 50 0.66
25 4 0.05
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:18023712 original size:47 final size:48
Alignment explanation
Indices: 18023643--18023748 Score: 178
Period size: 48 Copynumber: 2.2 Consensus size: 48
18023633 GGAGGAAGTG
18023643 CAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTAT
*
18023690 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTAT
*
18023738 TAAAAGAGGCT
1 CAAAAG-GGCT
18023749 AGGCCTCCAG
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
47 25 0.45
48 26 0.47
49 4 0.07
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (48 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTAT
Found at i:18023990 original size:31 final size:31
Alignment explanation
Indices: 18023955--18024018 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
18023945 CGTTTACAGT
*
18023955 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGACCAGTAATATGAAATATGA
** *
18023986 AAAGGCTTCGGACCAGTGTTATGAATTATGA
1 AAAGGCTTCGGACCAGTAATATGAAATATGA
18024017 AA
1 AA
18024019 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGACCAGTAATATGAAATATGA
Found at i:18026052 original size:47 final size:47
Alignment explanation
Indices: 18025974--18026993 Score: 1896
Period size: 47 Copynumber: 21.6 Consensus size: 47
18025964 CCCTTCGGGA
* * * * * *
18025974 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
18026021 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18026068 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18026115 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18026162 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18026209 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18026256 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18026303 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18026350 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18026397 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18026444 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18026491 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18026538 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18026585 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18026632 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18026679 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18026726 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18026773 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18026820 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18026867 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
18026916 CTTATCACATATATATACACTTTCACATTCATCACATCATCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18026965 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
18026994 TATTCAAATA
Statistics
Matches: 959, Mismatches: 12, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
47 844 0.88
49 115 0.12
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:18035685 original size:25 final size:24
Alignment explanation
Indices: 18035651--18035698 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
18035641 CTATAACATG
* *
18035651 AAAATGACCATTTTGCCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
18035675 AAAAGTGACCATTATACCCCTAGG
1 AAAA-TGACCATTATACCCCTAGG
18035699 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:18035760 original size:20 final size:20
Alignment explanation
Indices: 18035735--18036565 Score: 1473
Period size: 20 Copynumber: 41.5 Consensus size: 20
18035725 ATTTTGATAA
18035735 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18035755 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18035775 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18035795 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18035815 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18035835 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18035855 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18035875 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18035895 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18035915 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18035935 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18035955 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18035975 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18035995 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18036015 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18036035 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18036055 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18036075 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18036095 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18036115 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18036135 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18036155 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18036175 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18036195 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18036215 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18036235 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18036255 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18036275 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18036295 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18036315 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18036335 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18036355 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18036375 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18036395 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18036415 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18036435 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18036455 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18036475 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18036495 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18036515 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18036535 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18036555 ACATGAGATGT
1 ACATGATATGT
18036566 TCATAAATGC
Statistics
Matches: 770, Mismatches: 41, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 770 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:18035779 original size:40 final size:40
Alignment explanation
Indices: 18035735--18036565 Score: 1653
Period size: 40 Copynumber: 20.8 Consensus size: 40
18035725 ATTTTGATAA
18035735 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
18035775 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
18035815 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
18035855 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
18035895 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
18035935 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
18035975 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
18036015 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
18036055 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
18036095 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
18036135 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
18036175 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
18036215 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
18036255 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
18036295 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
18036335 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
18036375 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
18036415 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
18036455 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
18036495 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATGATATGC
*
18036535 ACATGATATGTATGATATGCACATGAGATGT
1 ACATGATATGTATGATATGCACATGACATGT
18036566 TCATAAATGC
Statistics
Matches: 790, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 790 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.32
Consensus pattern (40 bp):
ACATGATATGTATGATATGCACATGACATGTATGATATGC
Found at i:18036645 original size:23 final size:23
Alignment explanation
Indices: 18036612--18036731 Score: 186
Period size: 23 Copynumber: 5.1 Consensus size: 23
18036602 AGGAAGTGCG
18036612 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
18036635 AAAGGGTTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
18036659 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
18036682 AAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
18036705 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
18036729 AAA
1 AAA
18036732 AAAGGCTAGG
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
23 46 0.52
24 42 0.48
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:18036669 original size:24 final size:23
Alignment explanation
Indices: 18036612--18036732 Score: 170
Period size: 24 Copynumber: 5.1 Consensus size: 23
18036602 AGGAAGTGCG
*
18036612 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATA
*
18036635 AAAGGGTTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-A
*
18036659 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATA
*
18036682 AAAGGGCTTACGCCCCAGTTATTA
1 AAAGGGCTTATGCCCCAGTTA-TA
*
18036706 AAAGGGCTTTTGCCCCAGTTATTA
1 AAAGGGCTTATGCCCCAGTTA-TA
18036730 AAA
1 AAA
18036733 AAGGCTAGGC
Statistics
Matches: 88, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
23 41 0.47
24 47 0.53
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATA
Found at i:18036681 original size:47 final size:47
Alignment explanation
Indices: 18036612--18036731 Score: 204
Period size: 47 Copynumber: 2.6 Consensus size: 47
18036602 AGGAAGTGCG
* *
18036612 AAAGGGCTTATGCCCCAGTTATTAAAGGGTTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTACGCCCCAGTTATCA
*
18036659 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTACGCCCCAGTTATTA
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTACGCCCCAGTTATCA
*
18036706 AAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAGGGCTTATGCCCCAGTTATTAAA
18036732 AAAGGCTAGG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTACGCCCCAGTTATCA
Found at i:18036980 original size:31 final size:31
Alignment explanation
Indices: 18036945--18037008 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
18036935 CATTTACAGT
18036945 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* ** *
18036976 AAAGGCTTTGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
18037007 AA
1 AA
18037009 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:18038169 original size:11 final size:10
Alignment explanation
Indices: 18038135--18038183 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
18038125 ATTAACATGT
*
18038135 TTAATTTTAA
1 TTAATTTTGA
*
18038145 TTAATTTTATA
1 TTAATTTT-GA
18038156 TTAAATTTTGA
1 TT-AATTTTGA
18038167 TTAATTTTGA
1 TTAATTTTGA
18038177 TT-ATTTT
1 TTAATTTT
18038184 CAATAGAGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
9 5 0.14
10 18 0.51
11 6 0.17
12 6 0.17
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (10 bp):
TTAATTTTGA
Found at i:18042027 original size:10 final size:10
Alignment explanation
Indices: 18042012--18042060 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
18042002 AATTTTAGCT
*
18042012 TTTATCTTCA
1 TTTATCTTTA
18042022 TTTATCTTTA
1 TTTATCTTTA
*
18042032 ATTATCTTTA
1 TTTATCTTTA
18042042 TTTAT-TTGTA
1 TTTATCTT-TA
18042052 TTTATCTTT
1 TTTATCTTT
18042061 TAGAATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 30 0.88
11 2 0.06
ACGTcount: A:0.20, C:0.10, G:0.02, T:0.67
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:18049422 original size:30 final size:30
Alignment explanation
Indices: 18049364--18049423 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
18049354 TTCCTGAGCC
*
18049364 TAGGGGAAAAAGTGTAATTTTGTAAAAGTT
1 TAGGGGAAAAAGTGTAATTTTGCAAAAGTT
* *
18049394 TAGGGGTAAAA-TGGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAGT-GTAATTTTGCAAAAGTT
18049424 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.37, C:0.03, G:0.27, T:0.33
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTTTGCAAAAGTT
Found at i:18050146 original size:49 final size:49
Alignment explanation
Indices: 18050065--18050159 Score: 154
Period size: 49 Copynumber: 1.9 Consensus size: 49
18050055 GCTATTGTGA
*
18050065 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * *
18050114 GGTCGCATGTGTAGTACTAAGTGCAGGGTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
18050160 GCTTCGGCTG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:18052945 original size:16 final size:15
Alignment explanation
Indices: 18052907--18052945 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
18052897 TGGATTCTCG
*
18052907 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
18052922 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
18052937 TATTCTTGG
1 TA-TCTTGG
18052946 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:18055064 original size:30 final size:30
Alignment explanation
Indices: 18055009--18055065 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
18054999 CTGAGCCTAA
*
18055009 GGGCAAAAGTGTAATTTTGTAAAAGTTTAT
1 GGGCAAAAGTGTAATTTTGCAAAAGTTTAT
*
18055039 GGGCAAAA-TGGTAATTTTGCCAAAGTT
1 GGGCAAAAGT-GTAATTTTGCAAAAGTT
18055066 CGTATTAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.35, C:0.07, G:0.25, T:0.33
Consensus pattern (30 bp):
GGGCAAAAGTGTAATTTTGCAAAAGTTTAT
Found at i:18055786 original size:49 final size:50
Alignment explanation
Indices: 18055708--18055953 Score: 316
Period size: 49 Copynumber: 4.9 Consensus size: 50
18055698 AGCTATTGTG
* * *
18055708 AGGTCACGTGTGTAGTACTAAGTGTAGGCTAGTGCGTGTACCAGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
18055758 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * **
18055808 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
18055858 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
18055908 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
18055954 GCTTCAGCTA
Statistics
Matches: 168, Mismatches: 26, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
49 81 0.48
50 48 0.29
51 39 0.23
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.29
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:18055845 original size:28 final size:28
Alignment explanation
Indices: 18055813--18055896 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
18055803 AACTTCGATC
18055813 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
18055841 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
18055863 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
18055891 ACGTGT
1 ACGTGT
18055897 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:18055905 original size:101 final size:98
Alignment explanation
Indices: 18055711--18055953 Score: 324
Period size: 100 Copynumber: 2.4 Consensus size: 98
18055701 TATTGTGAGG
* * *
18055711 TCACGTGTGTAGTACTAAGTGTAGGCTAGTGCGTGTACCAGATAATTGGTCACATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
* *
18055776 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCGGATAA-TT-GA
* ** *
18055811 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* *
18055876 TAAGTGCAGGCTACTACGTGTACCGGATAATTGG
65 TAAGTGCAGGCTACTACGCGTACCGGATAATTGA
* * * *
18055910 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
18055954 GCTTCAGCTA
Statistics
Matches: 125, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
99 39 0.31
100 43 0.34
101 43 0.34
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCGGATAATTGA
Found at i:18059755 original size:41 final size:40
Alignment explanation
Indices: 18059682--18059761 Score: 97
Period size: 41 Copynumber: 2.0 Consensus size: 40
18059672 GAGGGGTAAT
* * * *
18059682 TTCGTGTAAGACCATGTTTGGGACATTTGCATCGTATATGA
1 TTCGTATAAGACCATGTCTGGGACAGTGGCATCG-ATATGA
* *
18059723 TTCGTATAAGACCCTGTCTGGGACGGTGGCATCGATATG
1 TTCGTATAAGACCATGTCTGGGACAGTGGCATCGATATG
18059762 TGTTAACATG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
40 5 0.15
41 28 0.85
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.33
Consensus pattern (40 bp):
TTCGTATAAGACCATGTCTGGGACAGTGGCATCGATATGA
Found at i:18067583 original size:17 final size:19
Alignment explanation
Indices: 18067541--18067584 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
18067531 ATGAAATTTT
*
18067541 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
18067560 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
18067578 AA-TATTA
1 AATTATTA
18067585 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:18069021 original size:189 final size:189
Alignment explanation
Indices: 18068701--18069084 Score: 750
Period size: 189 Copynumber: 2.0 Consensus size: 189
18068691 TTTACCCGTA
18068701 TGGGCCCGTAAGATTTTACAAGGTTGTTAACAATGTTTTGATTATTACAATGAATCACATTTTGG
1 TGGGCCCGTAAGATTTTACAAGGTTGTTAACAATGTTTTGATTATTACAATGAATCACATTTTGG
* *
18068766 GAAAGGCTAAGGTTTTATACAAGTTAAAACAGTAAAAGTTTTTAAACATCAAGAAGGGTTTTCAA
66 AAAAGGCTAAGGTTTTATACAAATTAAAACAGTAAAAGTTTTTAAACATCAAGAAGGGTTTTCAA
18068831 TGAAAACATGGTTTTCGAAAAACACTTCAATGTGACACACCAGACTTGGCCATAATGTC
131 TGAAAACATGGTTTTCGAAAAACACTTCAATGTGACACACCAGACTTGGCCATAATGTC
18068890 TGGGCCCGTAAGATTTTACAAGGTTGTTAACAATGTTTTGATTATTACAATGAATCACATTTTGG
1 TGGGCCCGTAAGATTTTACAAGGTTGTTAACAATGTTTTGATTATTACAATGAATCACATTTTGG
18068955 AAAAGGCTAAGGTTTTATACAAATTAAAACAGTAAAAGTTTTTAAACATCAAGAAGGGTTTTCAA
66 AAAAGGCTAAGGTTTTATACAAATTAAAACAGTAAAAGTTTTTAAACATCAAGAAGGGTTTTCAA
18069020 TGAAAACATGGTTTTCGAAAAACACTTCAATGTGACACACCAGACTTGGCCATAATGTC
131 TGAAAACATGGTTTTCGAAAAACACTTCAATGTGACACACCAGACTTGGCCATAATGTC
18069079 TGGGCC
1 TGGGCC
18069085 AGGTTTGGGG
Statistics
Matches: 193, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
189 193 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (189 bp):
TGGGCCCGTAAGATTTTACAAGGTTGTTAACAATGTTTTGATTATTACAATGAATCACATTTTGG
AAAAGGCTAAGGTTTTATACAAATTAAAACAGTAAAAGTTTTTAAACATCAAGAAGGGTTTTCAA
TGAAAACATGGTTTTCGAAAAACACTTCAATGTGACACACCAGACTTGGCCATAATGTC
Found at i:18071021 original size:41 final size:39
Alignment explanation
Indices: 18070899--18071065 Score: 165
Period size: 41 Copynumber: 4.1 Consensus size: 39
18070889 TAGTGATATA
* *
18070899 ATATCAAGCTTATTGCCT-GCAGGCTTTGATGCAGGTGTATG
1 ATATC-AGCTTATTGCCTAGCA-GCTTT-ATGCCGGTGTATT
*
18070940 ATATCAGGCTTATTGCCTAGCAGACTTTATGACGGTGTATT
1 ATATCA-GCTTATTGCCTAGCAG-CTTTATGCCGGTGTATT
18070981 ATATCGAGCTTTATTGCCTAGCAGCTTTATGCCGGTGTATT
1 ATATC-AGC-TTATTGCCTAGCAGCTTTATGCCGGTGTATT
* * * * * *
18071022 ATGTTAGGCCTATTGCCTACCAGGTTCTGTGCCGGTGTATT
1 ATATCA-GCTTATTGCCTAGCAGCTT-TATGCCGGTGTATT
18071063 ATA
1 ATA
18071066 CTAGGCTTTA
Statistics
Matches: 108, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
40 16 0.15
41 70 0.65
42 22 0.20
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.37
Consensus pattern (39 bp):
ATATCAGCTTATTGCCTAGCAGCTTTATGCCGGTGTATT
Found at i:18071074 original size:82 final size:83
Alignment explanation
Indices: 18070908--18071075 Score: 191
Period size: 82 Copynumber: 2.0 Consensus size: 83
18070898 AATATCAAGC
* *
18070908 TTATTGCCTGCAGGCTTTGATGCAGGTGTATGATATCAGGCTTATTGCCTAGCAGACTTTATGAC
1 TTATTGCCTGCAGGCTTTGATGCAGGTGTATGATATCAGGCCTATTGCCTACCAGACTTTATGAC
*
18070973 GGTGTATTATATCGAGCT
66 GGTGTATTATATAGAGCT
* * * * * *
18070991 TTATTGCCTAGCA-GCTTT-ATGCCGGTGTATTATGTTAGGCCTATTGCCTACCAG-GTTCTGTG
1 TTATTGCCT-GCAGGCTTTGATGCAGGTGTATGATATCAGGCCTATTGCCTACCAGACTT-TATG
*
18071053 CCGGTGTATTATACTAG-GCT
64 ACGGTGTATTATA-TAGAGCT
18071073 TTA
1 TTA
18071076 CGCCTAACAA
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
81 2 0.03
82 51 0.71
83 16 0.22
84 3 0.04
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.38
Consensus pattern (83 bp):
TTATTGCCTGCAGGCTTTGATGCAGGTGTATGATATCAGGCCTATTGCCTACCAGACTTTATGAC
GGTGTATTATATAGAGCT
Found at i:18075017 original size:5 final size:5
Alignment explanation
Indices: 18075009--18075083 Score: 57
Period size: 5 Copynumber: 14.8 Consensus size: 5
18074999 CCAATTTTGT
* *
18075009 TTTTA TTTT- TATTA -TTTA -TTTA TTTATTA CTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA -TT-TTA TTTTA TTTTA TTTTA TTTTA
* *
18075058 TTATTTA TTATA TATTA TTTTA TTTT
1 -T-TTTA TTTTA TTTTA TTTTA TTTT
18075084 GTTTGGATAT
Statistics
Matches: 56, Mismatches: 8, Indels: 12
0.74 0.11 0.16
Matches are distributed among these distances:
4 10 0.18
5 35 0.62
6 4 0.07
7 7 0.12
ACGTcount: A:0.24, C:0.01, G:0.00, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:18075029 original size:4 final size:4
Alignment explanation
Indices: 18075010--18075082 Score: 51
Period size: 4 Copynumber: 16.8 Consensus size: 4
18075000 CAATTTTGTT
*
18075010 TTTA TTTT TATTA TTTA TTTA TTTA -TTA CTTTA TTTTA TTTTA TTT-
1 TTTA TTTA T-TTA TTTA TTTA TTTA TTTA -TTTA -TTTA -TTTA TTTA
18075056 TATTA TTTA TTATA TATTA TTTTA TTT
1 T-TTA TTTA TT-TA T-TTA -TTTA TTT
18075083 TGTTTGGATA
Statistics
Matches: 58, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
3 4 0.07
4 28 0.48
5 24 0.41
6 2 0.03
ACGTcount: A:0.25, C:0.01, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:18075078 original size:22 final size:22
Alignment explanation
Indices: 18075009--18075081 Score: 87
Period size: 22 Copynumber: 3.3 Consensus size: 22
18074999 CCAATTTTGT
*
18075009 TTTTATT-TTTATTATTTATTTA
1 TTTTATTATTTATTATATA-TTA
* *
18075031 -TTTATTACTTTATTTTATTTTA
1 TTTTATTA-TTTATTATATATTA
18075053 TTTTATTATTTATTATATATTA
1 TTTTATTATTTATTATATATTA
18075075 TTTTATT
1 TTTTATT
18075082 TTGTTTGGAT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
21 6 0.14
22 22 0.51
23 15 0.35
ACGTcount: A:0.25, C:0.01, G:0.00, T:0.74
Consensus pattern (22 bp):
TTTTATTATTTATTATATATTA
Found at i:18075529 original size:26 final size:26
Alignment explanation
Indices: 18075500--18075607 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
18075490 TGGTACAAAT
18075500 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
18075526 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
18075552 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
18075578 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
18075604 TGAT
1 TGAT
18075608 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:18080479 original size:55 final size:55
Alignment explanation
Indices: 18080347--18080479 Score: 221
Period size: 55 Copynumber: 2.4 Consensus size: 55
18080337 CCCAGATAGG
* * * * *
18080347 GTCTTACTCGCACACATATATCAGAGTACATATCGATGCCAACGTATAAAACGTG
1 GTCTTACTCACACACATATATCGGAGTACATATCAATGCCAACGTATAAAACATA
18080402 GTCTTACTCACACACATATATCGGAGTACATATCAATGCCAACGTATAAAACATA
1 GTCTTACTCACACACATATATCGGAGTACATATCAATGCCAACGTATAAAACATA
18080457 GTCTTACTCACACACATATATCG
1 GTCTTACTCACACACATATATCG
18080480 ATGCCATGGT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 73 1.00
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (55 bp):
GTCTTACTCACACACATATATCGGAGTACATATCAATGCCAACGTATAAAACATA
Found at i:18082416 original size:35 final size:35
Alignment explanation
Indices: 18082370--18082441 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
18082360 AGTCAAGTAT
18082370 TATTGTTGGCTAGGACAACAATAATGCATTAAGAC
1 TATTGTTGGCTAGGACAACAATAATGCATTAAGAC
18082405 TATTGTTGGCTAGGACAACAATAATGCATTAAGAC
1 TATTGTTGGCTAGGACAACAATAATGCATTAAGAC
18082440 TA
1 TA
18082442 ACATGTAGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (35 bp):
TATTGTTGGCTAGGACAACAATAATGCATTAAGAC
Found at i:18094516 original size:8 final size:9
Alignment explanation
Indices: 18094488--18094515 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
18094478 TTTAGTCCCT
18094488 AATCACAAA
1 AATCACAAA
18094497 AATCACAAA
1 AATCACAAA
18094506 AATCACAAA
1 AATCACAAA
18094515 A
1 A
18094516 TACACCAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.68, C:0.21, G:0.00, T:0.11
Consensus pattern (9 bp):
AATCACAAA
Found at i:18103111 original size:40 final size:40
Alignment explanation
Indices: 18103024--18103118 Score: 95
Period size: 40 Copynumber: 2.4 Consensus size: 40
18103014 GACTATGTTC
* * *
18103024 GGCACTAAGTGTACAGTTTGAAATAGCTTTGGCTACAAAT
1 GGCACTAAGTGTGCAGTTCGAAATAGCTTTAGCTACAAAT
* * *
18103064 GGAACTAAGTGTGCGAGTTCG-AATAGCTTTAGTTATATAA-
1 GGCACTAAGTGTGC-AGTTCGAAATAGCTTTAGCTACA-AAT
*
18103104 GGCACTAAATGTGCA
1 GGCACTAAGTGTGCA
18103119 ATACCGAGAT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
39 1 0.02
40 37 0.82
41 7 0.16
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (40 bp):
GGCACTAAGTGTGCAGTTCGAAATAGCTTTAGCTACAAAT
Found at i:18108737 original size:28 final size:27
Alignment explanation
Indices: 18108629--18108741 Score: 104
Period size: 27 Copynumber: 4.1 Consensus size: 27
18108619 AGCATGGCTG
* * *
18108629 CCAGAATAGATA-ATGTGACAGAGTCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* *
18108655 CCAGATACAGATA-ATCATAGCAGAGCCA
1 CCAGA-ACAGATATAT-GTGGCAGAGCCA
*
18108683 CCAGAACAGATATATGTGGTAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* * *
18108710 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGAT-ATATGTGGCAGAGCCA
18108738 CCAG
1 CCAG
18108742 GACACTTCCT
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
26 5 0.07
27 34 0.48
28 32 0.45
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.19
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAGAGCCA
Found at i:18111943 original size:40 final size:40
Alignment explanation
Indices: 18111884--18112067 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
18111874 TATTCGTATG
* *
18111884 ATATCCGGGCTAAGTTCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* * *
18111924 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
18111964 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
18112004 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
18112044 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
18112068 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:18112017 original size:80 final size:79
Alignment explanation
Indices: 18111884--18112098 Score: 258
Period size: 80 Copynumber: 2.7 Consensus size: 79
18111874 TATTCGTATG
** * * *
18111884 ATATCCGGGCTAAGTTCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCGAAGGCA
* *
18111949 TTTGTGCGAGTTG-CT
65 TTTATGCGAG-TGACC
*
18111964 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAG-TCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGAT-CCGAAGGC
*
18112028 ATTTATGCTAGTGACC
64 ATTTATGCGAGTGACC
* * *
18112044 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATAT-CGGGCTAA-ATCC
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCC
18112099 CAAAGATACT
Statistics
Matches: 118, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
77 2 0.02
78 9 0.08
79 18 0.15
80 89 0.75
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCGAAGGCAT
TTATGCGAGTGACC
Found at i:18119996 original size:21 final size:22
Alignment explanation
Indices: 18119972--18120016 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
18119962 TGAAATATGG
18119972 ATGTGTCATGATTATT-GAT-AT
1 ATGTG-CATGATTATTCGATGAT
*
18119993 ATGTGCATGGTTATTCGATGAT
1 ATGTGCATGATTATTCGATGAT
18120015 AT
1 AT
18120017 CCGGGCTAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 8 0.38
22 4 0.19
ACGTcount: A:0.27, C:0.07, G:0.22, T:0.44
Consensus pattern (22 bp):
ATGTGCATGATTATTCGATGAT
Found at i:18120073 original size:40 final size:40
Alignment explanation
Indices: 18120013--18120276 Score: 302
Period size: 40 Copynumber: 6.6 Consensus size: 40
18120003 TTATTCGATG
*
18120013 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * * *
18120053 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * * *
18120093 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
18120133 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * * * *
18120173 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
18120213 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
18120253 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
18120277 CTTGTGCGAG
Statistics
Matches: 188, Mismatches: 29, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
39 1 0.01
40 184 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:18120146 original size:80 final size:80
Alignment explanation
Indices: 18120013--18120312 Score: 401
Period size: 80 Copynumber: 3.8 Consensus size: 80
18120003 TTATTCGATG
* * * * * * *
18120013 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAG-TCCCGAAGGC
* * **
18120077 ATTTGTGCGAGTTG-TT
65 ATTTATGCTAG-TGACC
18120093 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGTCCCGAAGGCA
18120158 TTTATGCTAGTGACC
66 TTTATGCTAGTGACC
18120173 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGTCCCGAAGGCA
18120238 TTTATGCTAGTGACC
66 TTTATGCTAGTGACC
* * * * * *
18120253 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGTCCCGAAG
18120313 ATACTTGGGT
Statistics
Matches: 201, Mismatches: 17, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
78 14 0.07
79 20 0.10
80 167 0.83
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGTCCCGAAGGCA
TTTATGCTAGTGACC
Found at i:18120226 original size:120 final size:120
Alignment explanation
Indices: 18120008--18120276 Score: 387
Period size: 120 Copynumber: 2.2 Consensus size: 120
18119998 CATGGTTATT
* * * * *
18120008 CGATGATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGATCCGA
1 CGATCATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATATCCGGACTAAGACCCAA
* *
18120073 AGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAG
66 AGGCATTTGTGCGAGTCGTTATATCCGGGCTAAGACCCAAAGGCATTTATGCTAG
* *
18120128 CGATTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATATCCGGGCTAAGACCCAA
1 CGATCATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATATCCGGACTAAGACCCAA
* * *
18120193 AGGCATTTGTGCTAG-CGATTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
66 AGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCAAAGGCATTTATGCTAG
* * *
18120248 TGACCATATCCGGGCTAAGACCCGAAGGC
1 CGATCATATCCGGGCTAAGTCCCGAAGGC
18120277 CTTGTGCGAG
Statistics
Matches: 133, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
119 1 0.01
120 132 0.99
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (120 bp):
CGATCATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATATCCGGACTAAGACCCAA
AGGCATTTGTGCGAGTCGTTATATCCGGGCTAAGACCCAAAGGCATTTATGCTAG
Found at i:18122118 original size:10 final size:9
Alignment explanation
Indices: 18122095--18122119 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
18122085 TTGAAAACCA
18122095 CAAAAATCC
1 CAAAAATCC
18122104 CAAAAATCC
1 CAAAAATCC
18122113 CAAAAAT
1 CAAAAAT
18122120 TAGGGCGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (9 bp):
CAAAAATCC
Found at i:18122976 original size:99 final size:101
Alignment explanation
Indices: 18122820--18123011 Score: 264
Period size: 99 Copynumber: 1.9 Consensus size: 101
18122810 TTTTTAGTAA
* * * *
18122820 TATGTTAGGCTGAGTAACCGGGGTGGGGTGCTTGGCTGTCATCTCTCTTTGCATCAAAAGGTTCG
1 TATGTTAGGCTGAGTAACCAGGGTAGGGTGCTTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCA
*
18122885 ATATGTTCTTAAG-AAAAAT-ATAATAAATTAGGAG
66 ATATATTCTTAAGCAAAAATAATAATAAATTAGGAG
* * *
18122919 TATGTT-GGACTGAGTAACCAGGGTAGGGTGCTTGGTTGTCATCTCTCTTCGCGTCAAACGGTTC
1 TATGTTAGG-CTGAGTAACCAGGGTAGGGTGCTTGGCTGTCATCTCTCTTCGCATCAAAAGGTTC
* *
18122983 AATGTATTCTTAAGCAATAATAATAATAA
65 AATATATTCTTAAGCAAAAATAATAATAA
18123012 TAAAAGAGAA
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
98 2 0.03
99 66 0.82
100 5 0.06
101 7 0.09
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (101 bp):
TATGTTAGGCTGAGTAACCAGGGTAGGGTGCTTGGCTGTCATCTCTCTTCGCATCAAAAGGTTCA
ATATATTCTTAAGCAAAAATAATAATAAATTAGGAG
Found at i:18123632 original size:10 final size:10
Alignment explanation
Indices: 18123617--18123675 Score: 75
Period size: 10 Copynumber: 5.9 Consensus size: 10
18123607 AATTTTAGCT
*
18123617 TTTATCTTCA
1 TTTATCTTTA
18123627 TTTATCTTTA
1 TTTATCTTTA
*
18123637 ATTATCTTTA
1 TTTATCTTTA
*
18123647 ATTATCTTTA
1 TTTATCTTTA
18123657 TTTAT-TTGTA
1 TTTATCTT-TA
18123667 TTTATCTTT
1 TTTATCTTT
18123676 TACAATTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
9 2 0.05
10 40 0.91
11 2 0.05
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.66
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:18125555 original size:12 final size:14
Alignment explanation
Indices: 18125538--18125569 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
18125528 GTAAGAACAC
18125538 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
18125550 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
18125564 ATGTGT
1 ATGTGT
18125570 TTAAGACAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:18125817 original size:151 final size:151
Alignment explanation
Indices: 18125581--18125969 Score: 568
Period size: 151 Copynumber: 2.6 Consensus size: 151
18125571 TAAGACAGTT
*
18125581 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGT
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
* * *** *
18125646 AGTACTAAGTGTAGGATACTATACATACCC-TATAGTTTCGACCACATGTGTAGTACTAAGTGCA
66 AGTACTAAGTGAAGGCTACTATACATACCCGT-TAACCTCGACCACATGTGTACTACTAAGTGCA
18125710 GGCTACTGA-ATGTATCAAATAG
130 GGCTACT-ACATGTATCAAATAG
*
18125732 TTAGGTCACATGTGTAGTACTAATTGCAGGCTACTACGTGTACC-GAATTGATAGGTCGCATGTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATTGATAGGTCGCATGTG
* * * *
18125796 TAGTACTAAGTGCAGTCTACTATACGTACCCGTTAACCTCGATCACATGTGTACTACTAAGTGCA
65 TAGTACTAAGTGAAGGCTACTATACATACCCGTTAACCTCGACCACATGTGTACTACTAAGTGCA
* *
18125861 GGCTACTACATGTATTAGATAG
130 GGCTACTACATGTATCAAATAG
* * * *
18125883 ATAAGTCACATGTGTAGTACTAAGTGCAGGATACTACATGTACCAGATTGATAGGTCGCATGTGT
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
18125948 AGTACTAAGTGAAGGCTACTAT
66 AGTACTAAGTGAAGGCTACTAT
18125970 GCGTACCAGA
Statistics
Matches: 214, Mismatches: 20, Indels: 8
0.88 0.08 0.03
Matches are distributed among these distances:
150 2 0.01
151 210 0.98
152 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (151 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
AGTACTAAGTGAAGGCTACTATACATACCCGTTAACCTCGACCACATGTGTACTACTAAGTGCAG
GCTACTACATGTATCAAATAG
Found at i:18125918 original size:101 final size:101
Alignment explanation
Indices: 18125737--18125918 Score: 258
Period size: 101 Copynumber: 1.8 Consensus size: 101
18125727 AATAGTTAGG
* * * * * * *
18125737 TCACATGTGTAGTACTAATTGCAGGCTACTACGTGTACCGAATTGATAGGTCGCATGTGTAGTAC
1 TCACATGTGTACTACTAAGTGCAGGCTACTACATGTACAGAATAGATAAGTCACATGTGTAGTAC
**
18125802 TAAGTGCAGTCTACTATACGTACCCGTTAACCTCGA
66 TAAGTGCAGGATACTATACGTACCCGTTAACCTCGA
*
18125838 TCACATGTGTACTACTAAGTGCAGGCTACTACATGTATTAG-ATAGATAAGTCACATGTGTAGTA
1 TCACATGTGTACTACTAAGTGCAGGCTACTACATGTA-CAGAATAGATAAGTCACATGTGTAGTA
18125902 CTAAGTGCAGGATACTA
65 CTAAGTGCAGGATACTA
18125919 CATGTACCAG
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
101 69 0.99
102 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (101 bp):
TCACATGTGTACTACTAAGTGCAGGCTACTACATGTACAGAATAGATAAGTCACATGTGTAGTAC
TAAGTGCAGGATACTATACGTACCCGTTAACCTCGA
Found at i:18125979 original size:50 final size:50
Alignment explanation
Indices: 18125582--18125968 Score: 375
Period size: 50 Copynumber: 7.7 Consensus size: 50
18125572 AAGACAGTTT
* *
18125582 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGA
* * * * ** ** * *
18125632 TAGGTCGCATGTGTAGTACTAAGTGTAGGATACTATACATACCCTATAGTT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG-A
* ** * * * *
18125683 TCGACCACATGTGTAGTACTAAGTGCAGGCTACTGA-ATGTATCAAATAGT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACT-ACATGTACCAGATTGA
* *
18125733 TAGGTCACATGTGTAGTACTAATTGCAGGCTACTACGTGTACC-GAATTGA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAG-ATTGA
* * * * * *
18125783 TAGGTCGCATGTGTAGTACTAAGTGCAGTCTACTATACGTACCCG-TTAA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGA
* * * ** *
18125832 CCTCGATCACATGTGTACTACTAAGTGCAGGCTACTACATGTATTAGATAGA
1 --TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGA
* *
18125884 TAAGTCACATGTGTAGTACTAAGTGCAGGATACTACATGTACCAGATTGA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGA
* *
18125934 TAGGTCGCATGTGTAGTACTAAGTGAAGGCTACTA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
18125969 TGCGTACCAG
Statistics
Matches: 268, Mismatches: 61, Indels: 16
0.78 0.18 0.05
Matches are distributed among these distances:
49 4 0.01
50 188 0.70
51 73 0.27
52 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (50 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGA
Found at i:18126889 original size:180 final size:180
Alignment explanation
Indices: 18126546--18126893 Score: 448
Period size: 180 Copynumber: 1.9 Consensus size: 180
18126536 GTAACATGTG
* * * * *
18126546 ATAAATAATTTTTATTGAAGAGAGGTTGGAACTGTTGGATAGTGAAATAGGGGTATATTTAATGA
1 ATAAATAATTTTTAGTGAAGAGAGGTCGGAACTGTAGGACAGTGAAACAGGGGTATATTTAATGA
* * * ** * * * *
18126611 ATAAACTGTTCTTATTTTCTGAACTAAAAGTTCTAAAAATTTTATGGTAAGAATATACGTGAGTC
66 ATAAACTATACTAATTGGCTCAACGAAAAGTTCTAAAAATTTTATGGTAAGAAGATACATGAGTC
* * **
18126676 TAGTTTTTGGGAAAACTAATATTTCTCAATTTGGAGTCTCGTACCATGAA
131 TAGTTTATGAGAAAACTAATAGATCTCAATTTGGAGTCTCGTACCATGAA
*
18126726 ATAAATAATTTTTAGTGAAGAGAGGTCGGAATTGTAGGACAGTGAAACAGGGGTATATTTAATGA
1 ATAAATAATTTTTAGTGAAGAGAGGTCGGAACTGTAGGACAGTGAAACAGGGGTATATTTAATGA
* *
18126791 ATAAACTATACTAATTGGCTCAACCGAAAA-TTCTAAAAATTTTATGGTAAGAAGATATATGATT
66 ATAAACTATACTAATTGGCTCAA-CGAAAAGTTCTAAAAATTTTATGGTAAGAAGATACATGAGT
* * *
18126855 TTAGTTTCAT-AGAAAATTAATAGATCTTAATTTGGAGTC
130 CTAGTTT-ATGAGAAAACTAATAGATCTCAATTTGGAGTC
18126894 ACTTAGCTCC
Statistics
Matches: 142, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
180 136 0.96
181 6 0.04
ACGTcount: A:0.37, C:0.08, G:0.19, T:0.35
Consensus pattern (180 bp):
ATAAATAATTTTTAGTGAAGAGAGGTCGGAACTGTAGGACAGTGAAACAGGGGTATATTTAATGA
ATAAACTATACTAATTGGCTCAACGAAAAGTTCTAAAAATTTTATGGTAAGAAGATACATGAGTC
TAGTTTATGAGAAAACTAATAGATCTCAATTTGGAGTCTCGTACCATGAA
Found at i:18127667 original size:29 final size:29
Alignment explanation
Indices: 18127625--18127692 Score: 109
Period size: 29 Copynumber: 2.3 Consensus size: 29
18127615 TGTATACGTA
* * *
18127625 TGGAAAAGAATTAAGGACAACATAAGGTT
1 TGGAAAATAGTTAAGGACAACATAAGGCT
18127654 TGGAAAATAGTTAAGGACAACATAAGGCT
1 TGGAAAATAGTTAAGGACAACATAAGGCT
18127683 TGGAAAATAG
1 TGGAAAATAG
18127693 CCTAAGTGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.47, C:0.07, G:0.25, T:0.21
Consensus pattern (29 bp):
TGGAAAATAGTTAAGGACAACATAAGGCT
Found at i:18131321 original size:48 final size:48
Alignment explanation
Indices: 18131265--18131495 Score: 250
Period size: 48 Copynumber: 4.8 Consensus size: 48
18131255 GAGGGTGAAT
* * * * * * **
18131265 TGCCGATGCCATGTTCTAAACATGGTCTTACACTGGCTCATATGTCGAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACACATC-AA
* * * * *
18131314 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTC-TTAT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACAC-ACATCAA
* * *
18131361 TGCCGATGCCATGTCCCAAACATGGTTTTAGACTAGCACACACATCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACACATCAA
* * *
18131409 TGCTGATGCCATGTCCTAGACATGGTCTCACACTAGCACACACATCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACACATCAA
*
18131457 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCAC
18131496 TCATATCACC
Statistics
Matches: 151, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
47 2 0.01
48 149 0.99
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACACATCAA
Found at i:18144760 original size:48 final size:47
Alignment explanation
Indices: 18144650--18144784 Score: 162
Period size: 48 Copynumber: 2.8 Consensus size: 47
18144640 GAGGGTGAAT
* * * ** *
18144650 TGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATGTTG
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACACATAG
18144697 TGGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACACATCAG
1 T-GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACACAT-AG
* * * *
18144746 TGCCAATGCTATGTCCCAGACATGGTCTTACACTGGCAC
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCAC
18144785 TCATATCACC
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
47 1 0.01
48 73 0.96
49 2 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (47 bp):
TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACACATAG
Done.