Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 60 of 167
Found at i:18923896 original size:27 final size:27
Alignment explanation
Indices: 18923845--18923896 Score: 63
Period size: 25 Copynumber: 1.9 Consensus size: 27
18923835 AATGCACAAA
*
18923845 TTTGAAAATAATTTCTTGGAAAACACC
1 TTTGAAAATAATTTCTTAGAAAACACC
18923872 TTTG-AAA-AATTTCTTCAGAATAACA
1 TTTGAAAATAATTTCTT-AGAA-AACA
18923897 TTCTTCTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 8 0.36
26 6 0.27
27 8 0.36
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (27 bp):
TTTGAAAATAATTTCTTAGAAAACACC
Found at i:18926389 original size:6 final size:6
Alignment explanation
Indices: 18926359--18926495 Score: 75
Period size: 6 Copynumber: 22.3 Consensus size: 6
18926349 AAGAAACATT
* * *
18926359 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * * *
18926408 ATCAAA ATCAAA ATCAGA ATTAGA ATTAGGTA A-CAGA ATCAGA ATCGGT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* * *
18926457 GTCAAGTA AT-AGA ATCAGA ATCAGA ACCAGG ATCAGA AT
1 ATC-AG-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT
18926496 TAGGTAACAG
Statistics
Matches: 100, Mismatches: 20, Indels: 22
0.70 0.14 0.15
Matches are distributed among these distances:
5 7 0.07
6 82 0.82
7 7 0.07
8 4 0.04
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:18926409 original size:19 final size:19
Alignment explanation
Indices: 18926385--18926516 Score: 74
Period size: 19 Copynumber: 6.7 Consensus size: 19
18926375 AAATGAGAAT
*
18926385 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTAA
* *
18926404 CAGAATCAAAATCA--AAA
1 CAGAATCAGAATCAGGTAA
* *
18926421 TCAGAATTAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
*
18926441 CAGAATCAGAATCGGTGTCAAGTAA
1 CAGAATCAGAA------TCAGGTAA
*
18926466 TAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
* *
18926483 CCAGGATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
*
18926503 CAGAATAAGAATCA
1 CAGAATCAGAATCA
18926517 ATATCAGGTA
Statistics
Matches: 84, Mismatches: 17, Indels: 24
0.67 0.14 0.19
Matches are distributed among these distances:
17 3 0.04
18 23 0.27
19 38 0.45
20 4 0.05
25 16 0.19
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.19
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:18926414 original size:37 final size:37
Alignment explanation
Indices: 18926368--18926453 Score: 118
Period size: 37 Copynumber: 2.3 Consensus size: 37
18926358 TATCAGAACT
* * *
18926368 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAAAATCAGAATCAGAATCAGGTAAC
* *
18926405 AGAATCAAAATCAAAATCAGAATTAGAATTAGGTAAC
1 AGAATCAAAATCAAAATCAGAATCAGAATCAGGTAAC
*
18926442 AGAATCAGAATC
1 AGAATCAAAATC
18926454 GGTGTCAAGT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (37 bp):
AGAATCAAAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:18926507 original size:31 final size:32
Alignment explanation
Indices: 18926429--18926513 Score: 81
Period size: 31 Copynumber: 2.7 Consensus size: 32
18926419 AATCAGAATT
* *
18926429 AGAATTAGGTAACAGAATCAGAATCGGTGTCA
1 AGAATTAGGTAACAGAATCAGAACCGGTATCA
18926461 AGTAA-TA-G-AATCAGAATCAGAACCAGG-ATC-
1 AG-AATTAGGTAA-CAGAATCAGAACC-GGTATCA
*
18926491 AGAATTAGGTAACAGAATAAGAA
1 AGAATTAGGTAACAGAATCAGAA
18926514 TCAATATCAG
Statistics
Matches: 44, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
29 2 0.05
30 6 0.14
31 26 0.59
32 8 0.18
33 2 0.05
ACGTcount: A:0.47, C:0.12, G:0.22, T:0.19
Consensus pattern (32 bp):
AGAATTAGGTAACAGAATCAGAACCGGTATCA
Found at i:18926516 original size:25 final size:25
Alignment explanation
Indices: 18926488--18926545 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
18926478 CAGAACCAGG
*
18926488 ATCAGAATTAGGTAACAGAATAAGA
1 ATCAGAATCAGGTAACAGAATAAGA
* *
18926513 ATCA-ATATCAGGTAACAGAATTATA
1 ATCAGA-ATCAGGTAACAGAATAAGA
18926538 ATCAGAAT
1 ATCAGAAT
18926546 GTGAATGCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 1 0.04
25 26 0.93
26 1 0.04
ACGTcount: A:0.50, C:0.10, G:0.16, T:0.24
Consensus pattern (25 bp):
ATCAGAATCAGGTAACAGAATAAGA
Found at i:18926533 original size:62 final size:62
Alignment explanation
Indices: 18926380--18926544 Score: 188
Period size: 62 Copynumber: 2.7 Consensus size: 62
18926370 AATCAAAATG
* * * *
18926380 AGAATCAGAATCAGA-ATCAGGTGACAGAATCAAAATCAAAATCAGAATTAGAATTAGGTAAC
1 AGAATCAGAATCA-ATATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAAC
** * * * * *
18926442 AGAATCAGAATCGGTGTCAAGTAATAGAATCAGAATCAGAACCAGGATCAGAATTAGGTAAC
1 AGAATCAGAATCAATATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAAC
* * *
18926504 AGAATAAGAATCAATATCAGGTAACAGAATTATAATCAGAA
1 AGAATCAGAATCAATATCAGGTAACAGAATCAAAATCAGAA
18926545 TGTGAATGCA
Statistics
Matches: 83, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
62 83 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (62 bp):
AGAATCAGAATCAATATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAAC
Found at i:18926772 original size:27 final size:27
Alignment explanation
Indices: 18926753--18926805 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
18926743 GGTACTTTGG
18926753 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
18926780 TAATTTTACAAGTCGAGGGTATTTCA
1 TAATTTTACAAGTCGAGGGTATTTCA
18926806 GTTGGGATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:18932903 original size:30 final size:30
Alignment explanation
Indices: 18932869--18932929 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
18932859 TCCTTAACTC
18932869 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
18932899 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
18932929 A
1 A
18932930 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:18942950 original size:16 final size:17
Alignment explanation
Indices: 18942931--18942966 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
18942921 CCTTAAACTT
*
18942931 TAAACCCTT-GAAACCC
1 TAAACCCTTAAAAACCC
18942947 TAAACCCTTAAAAACCC
1 TAAACCCTTAAAAACCC
18942964 TAA
1 TAA
18942967 CCTAAACCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.44, C:0.33, G:0.03, T:0.19
Consensus pattern (17 bp):
TAAACCCTTAAAAACCC
Found at i:18942973 original size:22 final size:23
Alignment explanation
Indices: 18942945--18942989 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
18942935 CCCTTGAAAC
18942945 CCTAAACCCTT-AA-AAACCCTAA
1 CCTAAA-CCTTAAACAAACCCTAA
18942967 CCTAAACCTTAAACAAACCCTAA
1 CCTAAACCTTAAACAAACCCTAA
18942990 AAACAAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 9 0.43
ACGTcount: A:0.47, C:0.36, G:0.00, T:0.18
Consensus pattern (23 bp):
CCTAAACCTTAAACAAACCCTAA
Found at i:18943972 original size:20 final size:21
Alignment explanation
Indices: 18943925--18943972 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
18943915 AAAAGATAAA
18943925 TTAAAATTGCATAATTCTTTG
1 TTAAAATTGCATAATTCTTTG
18943946 TTAAAATTGCATAATTCTTTG
1 TTAAAATTGCATAATTCTTTG
18943967 -TAAAAT
1 TTAAAAT
18943973 ATATATTAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 6 0.22
21 21 0.78
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (21 bp):
TTAAAATTGCATAATTCTTTG
Found at i:18944291 original size:40 final size:39
Alignment explanation
Indices: 18944247--18944324 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 39
18944237 TATATTTTGA
* * *
18944247 ATATTTATTTAATAT-TTAAAAAGTATGCATTACATTTTTT
1 ATATTTAATT-ATATCTGAAAAAATATGCATTAC-TTTTTT
*
18944287 ATATTTAATTATATCTGAAAAAATATGTATTACTTTTT
1 ATATTTAATTATATCTGAAAAAATATGCATTACTTTTT
18944325 CTCAGTGTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
39 9 0.27
40 24 0.73
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (39 bp):
ATATTTAATTATATCTGAAAAAATATGCATTACTTTTTT
Found at i:18945450 original size:18 final size:18
Alignment explanation
Indices: 18945427--18945465 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
18945417 AAAATGTAAC
18945427 ATTTTTAAATA-AATATTT
1 ATTTTTAAATACAAT-TTT
18945445 ATTTTTAAATACAATTTT
1 ATTTTTAAATACAATTTT
18945463 ATT
1 ATT
18945466 CTTTGATGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTTTTAAATACAATTTT
Found at i:18952474 original size:17 final size:18
Alignment explanation
Indices: 18952438--18952475 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
18952428 TTTTTTCTTT
**
18952438 CCTCTCCATATTGTTGTC
1 CCTCTCCATATTGTCCTC
18952456 CCTCTCCAT-TTGTCCTC
1 CCTCTCCATATTGTCCTC
18952473 CCT
1 CCT
18952476 TTTCTCTCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.08, C:0.42, G:0.08, T:0.42
Consensus pattern (18 bp):
CCTCTCCATATTGTCCTC
Found at i:18953907 original size:45 final size:44
Alignment explanation
Indices: 18953833--18953950 Score: 121
Period size: 45 Copynumber: 2.7 Consensus size: 44
18953823 TACAAAATTG
* * *
18953833 ATGGTTTATCCACAACCTACATGGCAGCTTGTCTGTGAATATTA
1 ATGGTTTATCCACAAACTACATGGAAGCTTATCTGTGAATATTA
* * *
18953877 ATGGTTTTGTCCACAAACTATATGGAAGCTTATCTGTGAAT-TTG
1 ATGG-TTTATCCACAAACTACATGGAAGCTTATCTGTGAATATTA
* * * * *
18953921 GTGGTTTATTCACAACCTAAATGGTAGCTT
1 ATGGTTTATCCACAAACTACATGGAAGCTT
18953951 GTTTGCAAAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
43 21 0.34
44 9 0.15
45 31 0.51
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.36
Consensus pattern (44 bp):
ATGGTTTATCCACAAACTACATGGAAGCTTATCTGTGAATATTA
Found at i:18954831 original size:11 final size:11
Alignment explanation
Indices: 18954815--18954841 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
18954805 ATAAAATGGG
18954815 AAAATAAGCCA
1 AAAATAAGCCA
18954826 AAAATAAGCCA
1 AAAATAAGCCA
18954837 AAAAT
1 AAAAT
18954842 TAGCTCATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.67, C:0.15, G:0.07, T:0.11
Consensus pattern (11 bp):
AAAATAAGCCA
Found at i:18957786 original size:11 final size:12
Alignment explanation
Indices: 18957760--18957788 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
18957750 TCTGCATGTA
18957760 TATTTTAAAGAG
1 TATTTTAAAGAG
18957772 TATTTTAAA-AG
1 TATTTTAAAGAG
18957783 TATTTT
1 TATTTT
18957789 GCTATTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 8 0.47
12 9 0.53
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (12 bp):
TATTTTAAAGAG
Found at i:18957880 original size:15 final size:15
Alignment explanation
Indices: 18957860--18957892 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
18957850 TCTCTATACT
*
18957860 TGAAACTTTAGATTA
1 TGAAACCTTAGATTA
18957875 TGAAACCTTAGATTA
1 TGAAACCTTAGATTA
18957890 TGA
1 TGA
18957893 GATGATATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.36
Consensus pattern (15 bp):
TGAAACCTTAGATTA
Found at i:18958319 original size:34 final size:34
Alignment explanation
Indices: 18958279--18958345 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
18958269 GAGAGAAAGG
18958279 AAAAAATAAAGTACAAAATAAGAGGGAGTCTAGA
1 AAAAAATAAAGTACAAAATAAGAGGGAGTCTAGA
18958313 AAAAAATAAAGTACAAAATAAGAGGGAGTCTAG
1 AAAAAATAAAGTACAAAATAAGAGGGAGTCTAG
18958346 TTATACTAGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.58, C:0.06, G:0.21, T:0.15
Consensus pattern (34 bp):
AAAAAATAAAGTACAAAATAAGAGGGAGTCTAGA
Found at i:18971392 original size:15 final size:15
Alignment explanation
Indices: 18971368--18971397 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
18971358 ATTAATTTTT
*
18971368 TAAATGTTCAAAATA
1 TAAATATTCAAAATA
18971383 TAAATATTCAAAATA
1 TAAATATTCAAAATA
18971398 ATAATTATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (15 bp):
TAAATATTCAAAATA
Found at i:18976809 original size:40 final size:39
Alignment explanation
Indices: 18976765--18976846 Score: 110
Period size: 39 Copynumber: 2.1 Consensus size: 39
18976755 CAATCACTAC
* *
18976765 CACAAAGCATGCAGGACTTTAAGCCCGGATACAATACCAG
1 CACAAACCATGCAGGACTTT-AGCCCGGATACAACACCAG
* * *
18976805 CACAAACCCTGCGGGACTTTAGCCCGGATATAACACCAG
1 CACAAACCATGCAGGACTTTAGCCCGGATACAACACCAG
18976844 CAC
1 CAC
18976847 GAATGCCTTC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 20 0.54
40 17 0.46
ACGTcount: A:0.34, C:0.32, G:0.20, T:0.15
Consensus pattern (39 bp):
CACAAACCATGCAGGACTTTAGCCCGGATACAACACCAG
Found at i:18976868 original size:30 final size:30
Alignment explanation
Indices: 18976832--18976889 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
18976822 TTTAGCCCGG
18976832 ATATAACACCAGCACGAATGCCTTCGGGGA
1 ATATAACACCAGCACGAATGCCTTCGGGGA
18976862 ATATAACACCAGCACGAATGCCTTCGGG
1 ATATAACACCAGCACGAATGCCTTCGGG
18976890 ACTTAGCCCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.33, C:0.28, G:0.22, T:0.17
Consensus pattern (30 bp):
ATATAACACCAGCACGAATGCCTTCGGGGA
Found at i:18976920 original size:39 final size:39
Alignment explanation
Indices: 18976862--18977019 Score: 201
Period size: 39 Copynumber: 4.3 Consensus size: 39
18976852 CCTTCGGGGA
*
18976862 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCAGGACTTAGCCCGG
*
18976901 ATATAACACCAGCATGAATGCCTTCAGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCAGGACTTAGCCCGG
*
18976940 ATATAACACCA--AC--A-----TCAGGACTTAGCCCAG
1 ATATAACACCAGCACGAATGCCTTCAGGACTTAGCCCGG
*
18976970 ATA-ATACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
1 ATATA-ACACCAGCACGAATGCCTTCAGGACTTAGCCCGG
18977009 ATATAACACCA
1 ATATAACACCA
18977020 TTATAAAGTC
Statistics
Matches: 102, Mismatches: 6, Indels: 22
0.78 0.05 0.17
Matches are distributed among these distances:
29 1 0.01
30 24 0.24
32 2 0.02
34 1 0.01
35 1 0.01
37 1 0.01
39 71 0.70
40 1 0.01
ACGTcount: A:0.33, C:0.30, G:0.19, T:0.18
Consensus pattern (39 bp):
ATATAACACCAGCACGAATGCCTTCAGGACTTAGCCCGG
Found at i:18976960 original size:30 final size:30
Alignment explanation
Indices: 18976924--18976980 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
18976914 ATGAATGCCT
*
18976924 TCAGGACTTAGCCCGGAT-ATAACACCAACA
1 TCAGGACTTAGCCCAGATAAT-ACACCAACA
18976954 TCAGGACTTAGCCCAGATAATACACCA
1 TCAGGACTTAGCCCAGATAATACACCA
18976981 GCACGAATGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.37, C:0.30, G:0.16, T:0.18
Consensus pattern (30 bp):
TCAGGACTTAGCCCAGATAATACACCAACA
Found at i:18976961 original size:69 final size:69
Alignment explanation
Indices: 18976888--18977019 Score: 221
Period size: 69 Copynumber: 1.9 Consensus size: 69
18976878 AATGCCTTCG
* *
18976888 GGACTTAGCCCGGAT-ATAACACCAGCATGAATGCCTTCAGGACTTAGCCCGGATATAACACCAA
1 GGACTTAGCCCAGATAAT-ACACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAACACCAA
18976952 CATCA
65 CATCA
*
18976957 GGACTTAGCCCAGATAATACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCA
1 GGACTTAGCCCAGATAATACACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAACACCA
18977020 TTATAAAGTC
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
69 57 0.97
70 2 0.03
ACGTcount: A:0.33, C:0.30, G:0.20, T:0.18
Consensus pattern (69 bp):
GGACTTAGCCCAGATAATACACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAACACCAAC
ATCA
Found at i:18977125 original size:28 final size:28
Alignment explanation
Indices: 18977092--18977168 Score: 93
Period size: 28 Copynumber: 2.8 Consensus size: 28
18977082 ATTTAATCAT
*
18977092 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTTGCACACTAAGTGCCATTC
* *
18977120 TCAATATCTCT-CACATTAAGTGCCATTC
1 TCAATAT-TTTGCACACTAAGTGCCATTC
* *
18977148 TCAATATTTCGTACACTAAGT
1 TCAATATTTTGCACACTAAGT
18977169 ACTATATTTG
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
27 1 0.03
28 37 0.93
29 2 0.05
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (28 bp):
TCAATATTTTGCACACTAAGTGCCATTC
Found at i:18978595 original size:21 final size:21
Alignment explanation
Indices: 18978538--18978580 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
18978528 GAAGTAAGTT
18978538 TGTGCAACTTGAATTGAATTA
1 TGTGCAACTTGAATTGAATTA
18978559 TGTGCAACTTGAATTGAATTA
1 TGTGCAACTTGAATTGAATTA
18978580 T
1 T
18978581 TGAATGTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (21 bp):
TGTGCAACTTGAATTGAATTA
Found at i:18978992 original size:10 final size:10
Alignment explanation
Indices: 18978977--18979006 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
18978967 AATACATCTC
18978977 TTTTTTTTTA
1 TTTTTTTTTA
18978987 TTTTTTTTTA
1 TTTTTTTTTA
*
18978997 TTTATTTTTA
1 TTTTTTTTTA
18979007 CTTAAGAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:18980917 original size:5 final size:6
Alignment explanation
Indices: 18980897--18980940 Score: 52
Period size: 6 Copynumber: 6.8 Consensus size: 6
18980887 CAATGTAATC
*
18980897 AAAATA AAAACA AAAATA AAAATA AAAATGGAA AAAATA AAAAT
1 AAAATA AAAATA AAAATA AAAATA AAAAT---A AAAATA AAAAT
18980941 TAGGTTACCT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
6 27 0.82
9 6 0.18
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:18987313 original size:10 final size:10
Alignment explanation
Indices: 18987255--18987304 Score: 73
Period size: 10 Copynumber: 5.0 Consensus size: 10
18987245 TTAAATTCTA
18987255 AAAGATAAAT
1 AAAGATAAAT
*
18987265 ACAGATAAAT
1 AAAGATAAAT
**
18987275 AAAGATATTT
1 AAAGATAAAT
18987285 AAAGATAAAT
1 AAAGATAAAT
18987295 AAAGATAAAT
1 AAAGATAAAT
18987305 GGAGATAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 34 1.00
ACGTcount: A:0.64, C:0.02, G:0.10, T:0.24
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:18988279 original size:9 final size:9
Alignment explanation
Indices: 18988262--18988307 Score: 83
Period size: 9 Copynumber: 5.1 Consensus size: 9
18988252 TGAGTTTTCG
18988262 AATTCGAAT
1 AATTCGAAT
*
18988271 AACTCGAAT
1 AATTCGAAT
18988280 AATTCGAAT
1 AATTCGAAT
18988289 AATTCGAAT
1 AATTCGAAT
18988298 AATTCGAAT
1 AATTCGAAT
18988307 A
1 A
18988308 TCAAACTATA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:18990778 original size:26 final size:26
Alignment explanation
Indices: 18990749--18990800 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
18990739 ATTAACAATA
18990749 TGCATACAAAGATATATATATAGCAT
1 TGCATACAAAGATATATATATAGCAT
18990775 TGCATACAAAGATATATATATAGCAT
1 TGCATACAAAGATATATATATAGCAT
18990801 ATATTGAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.31
Consensus pattern (26 bp):
TGCATACAAAGATATATATATAGCAT
Found at i:18992529 original size:26 final size:26
Alignment explanation
Indices: 18992500--18992552 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
18992490 TCAAACATGC
18992500 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
18992526 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
18992552 A
1 A
18992553 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:18993193 original size:24 final size:24
Alignment explanation
Indices: 18993097--18993194 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
18993087 AACTCCTGCT
* *
18993097 CCTTGATCATCTCCTAAATCTTCTC
1 CCTT-ATCAGCTCCTAAATCCTCTC
**
18993122 ATTTATCAGCTCCTAAATCCTCTC
1 CCTTATCAGCTCCTAAATCCTCTC
*
18993146 TCTTATCAGCTCCTAAATCCTCTC
1 CCTTATCAGCTCCTAAATCCTCTC
* *
18993170 CCTTATCAGCTCCTAACTCTTCTC
1 CCTTATCAGCTCCTAAATCCTCTC
18993194 C
1 C
18993195 TGACAACCTT
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
24 62 0.97
25 2 0.03
ACGTcount: A:0.20, C:0.38, G:0.04, T:0.38
Consensus pattern (24 bp):
CCTTATCAGCTCCTAAATCCTCTC
Found at i:18993662 original size:8 final size:8
Alignment explanation
Indices: 18993649--18993673 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
18993639 AATATAATTT
18993649 AATTTTAA
1 AATTTTAA
18993657 AATTTTAA
1 AATTTTAA
18993665 AATTTTAA
1 AATTTTAA
18993673 A
1 A
18993674 TAATATAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
AATTTTAA
Found at i:18993944 original size:22 final size:21
Alignment explanation
Indices: 18993914--18993969 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
18993904 ATATAATAAT
*
18993914 ATAAAAATAATGATG-GAAAATA
1 ATAATAATAAT-ATGTGAAAA-A
*
18993936 ATAATAATAATTTGTGAAAAA
1 ATAATAATAATATGTGAAAAA
18993957 ATAATATATAATA
1 ATAATA-ATAATA
18993970 AATAATAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 9 0.31
22 20 0.69
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (21 bp):
ATAATAATAATATGTGAAAAA
Found at i:18993984 original size:19 final size:19
Alignment explanation
Indices: 18993865--18993995 Score: 71
Period size: 19 Copynumber: 6.9 Consensus size: 19
18993855 TAAGACCAAT
*
18993865 ATATATATAAATAATTAATA
1 ATATATAT-AATAAATAATA
18993885 A-ATATATAATGCAAATAA-A
1 ATATATATAAT--AAATAATA
*
18993904 ATATA-ATAATATAAAAATA
1 ATATATATAATA-AATAATA
** *
18993923 ATGATGGAAAAT-AATAATA
1 AT-ATATATAATAAATAATA
** *
18993942 ATA-AT-TTGTGAA-AA-A
1 ATATATATAATAAATAATA
18993957 ATAATATATAATAAATAATA
1 AT-ATATATAATAAATAATA
18993977 ATATATATAATAAAATAAT
1 ATATATATAAT-AAATAAT
18993996 CTTATAATGT
Statistics
Matches: 84, Mismatches: 13, Indels: 28
0.67 0.10 0.22
Matches are distributed among these distances:
15 3 0.04
16 4 0.05
17 5 0.06
18 12 0.14
19 35 0.42
20 21 0.25
21 4 0.05
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.33
Consensus pattern (19 bp):
ATATATATAATAAATAATA
Found at i:18995824 original size:119 final size:119
Alignment explanation
Indices: 18995640--18995893 Score: 508
Period size: 119 Copynumber: 2.1 Consensus size: 119
18995630 TAAGCACAAG
18995640 GATGCCAAATCATCTTGGATCTTGCTTCAGTCTAATCGTCTGAAGGTCAGATCTACTGTGTATCT
1 GATGCCAAATCATCTTGGATCTTGCTTCAGTCTAATCGTCTGAAGGTCAGATCTACTGTGTATCT
18995705 GCTCTCTATTGAAGTGGAGATGCCAGACTTCGATTTGCTCTTTGCCAATACAGA
66 GCTCTCTATTGAAGTGGAGATGCCAGACTTCGATTTGCTCTTTGCCAATACAGA
18995759 GATGCCAAATCATCTTGGATCTTGCTTCAGTCTAATCGTCTGAAGGTCAGATCTACTGTGTATCT
1 GATGCCAAATCATCTTGGATCTTGCTTCAGTCTAATCGTCTGAAGGTCAGATCTACTGTGTATCT
18995824 GCTCTCTATTGAAGTGGAGATGCCAGACTTCGATTTGCTCTTTGCCAATACAGA
66 GCTCTCTATTGAAGTGGAGATGCCAGACTTCGATTTGCTCTTTGCCAATACAGA
18995878 GATGCCAAATCATCTT
1 GATGCCAAATCATCTT
18995894 AGATTTTCTT
Statistics
Matches: 135, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
119 135 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.33
Consensus pattern (119 bp):
GATGCCAAATCATCTTGGATCTTGCTTCAGTCTAATCGTCTGAAGGTCAGATCTACTGTGTATCT
GCTCTCTATTGAAGTGGAGATGCCAGACTTCGATTTGCTCTTTGCCAATACAGA
Found at i:18996180 original size:205 final size:205
Alignment explanation
Indices: 18995732--18996180 Score: 609
Period size: 205 Copynumber: 2.2 Consensus size: 205
18995722 AGATGCCAGA
* * *
18995732 CTTCGATTTGCTCTTTGCCAATACAGAGATGCCAAATCATCTTGGATCTTGCTTCAGTCTAATCG
1 CTTCGATTTGCTC-TTGCCAATACAGAGATGCCAAACCATCTTGGATCTTGCTTCAGTCTAAACA
*
18995797 TCTGAAGGTCAGATCTACTGTGTATCTGCTCTCTATTGAAGTGGAGATGCCAGACTTCGATTTGC
65 TCTGAAGGTCAGATCTACTGTGTATCTGCTCTCTATTGAAGTGGAGATGCCAGACTTCAATTTGC
* ** * * *
18995862 TCTTTGCCAATACAGAGATGCCAAATCATCTTAGATTTTCTTCATCATAAACACATGAAAGCTAA
130 TCTCTAACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCATAAACACATGAAAGCCAA
18995927 ATCAGCTATGT
195 ATCAGCTATGT
* * * * *
18995938 CTTCAATTTGTTCCTTG-TAAGCACA-AGGATACCAAACCATCTTGGATC-TGCTTCAG-CATAA
1 CTTCGATTTGCT-CTTGCCAA-TACAGA-GATGCCAAACCATCTTGGATCTTGCTTCAGTC-TAA
* *
18995999 ACATCTGAAGGTGAGATCTGCTGTGTATCTGCTCTCTATTGAAGTGGAGATGCCAGACTTCAATT
62 ACATCTGAAGGTCAGATCTACTGTGTATCTGCTCTCTATTGAAGTGGAGATGCCAGACTTCAATT
* * * **
18996064 TGTTCTCTAACAATACAGAGATGACAAATCATCTTAGATTTGCTTTATCGTAAACATGTGAAAGC
127 TGCTCTCTAACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCATAAACACATGAAAGC
*
18996129 CAAATTAGCTATGT
192 CAAATCAGCTATGT
18996143 CTTCGATTTGCTCTTCGCCAATACAGAGATGCCAAACC
1 CTTCGATTTGCTCTT-GCCAATACAGAGATGCCAAACC
18996181 TGGTATCTTA
Statistics
Matches: 208, Mismatches: 28, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
204 4 0.02
205 165 0.79
206 38 0.18
207 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (205 bp):
CTTCGATTTGCTCTTGCCAATACAGAGATGCCAAACCATCTTGGATCTTGCTTCAGTCTAAACAT
CTGAAGGTCAGATCTACTGTGTATCTGCTCTCTATTGAAGTGGAGATGCCAGACTTCAATTTGCT
CTCTAACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCATAAACACATGAAAGCCAAA
TCAGCTATGT
Found at i:18997240 original size:5 final size:5
Alignment explanation
Indices: 18997230--18997254 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
18997220 ACCTCTCCAA
18997230 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
18997255 TAAAATCTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:19005409 original size:16 final size:16
Alignment explanation
Indices: 19005388--19005425 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
19005378 TTACTAACCT
19005388 TCCTCTTGTAATCGAC
1 TCCTCTTGTAATCGAC
19005404 TCCTCTTGTAATCGAC
1 TCCTCTTGTAATCGAC
19005420 TCCTCT
1 TCCTCT
19005426 GTATACGAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.16, C:0.34, G:0.11, T:0.39
Consensus pattern (16 bp):
TCCTCTTGTAATCGAC
Found at i:19008560 original size:23 final size:24
Alignment explanation
Indices: 19008534--19008595 Score: 69
Period size: 22 Copynumber: 2.8 Consensus size: 24
19008524 AATATAATAG
19008534 ATATAATATAA-AATAATGAAAAT
1 ATATAATATAAGAATAATGAAAAT
* *
19008557 ATAT-ATGTAAGAATAATGCAAAT
1 ATATAATATAAGAATAATGAAAAT
*
19008580 A-A-AATATAATAATAAT
1 ATATAATATAAGAATAAT
19008596 ATAAAAATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
22 17 0.52
23 16 0.48
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (24 bp):
ATATAATATAAGAATAATGAAAAT
Found at i:19008661 original size:20 final size:17
Alignment explanation
Indices: 19008634--19008678 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 17
19008624 ATTTGTGAAA
19008634 AAAATAATATATAATAAAT
1 AAAATAATATAT-AT-AAT
19008653 AATAATAATATATATAAT
1 AA-AATAATATATATAAT
19008671 AAAATAAT
1 AAAATAAT
19008679 CTTATAATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.24
18 5 0.20
19 4 0.16
20 10 0.40
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AAAATAATATATATAAT
Found at i:19011791 original size:16 final size:16
Alignment explanation
Indices: 19011772--19011805 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
19011762 AAAAATAATT
* *
19011772 AAAATTTGAAATTTTA
1 AAAATTTAAAATTCTA
19011788 AAAATTTAAAATTCTA
1 AAAATTTAAAATTCTA
19011804 AA
1 AA
19011806 CTTAATTATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (16 bp):
AAAATTTAAAATTCTA
Found at i:19020241 original size:42 final size:43
Alignment explanation
Indices: 19020136--19020278 Score: 143
Period size: 43 Copynumber: 3.3 Consensus size: 43
19020126 TCTGAGACGT
* *
19020136 CATGTAAGACCGTGTCTGGGACACAGGC--CT-TGATTGAGATTTA
1 CATGTAAGACCATGTCTGGGACAGAGGCATCTAT-ATTGA-A-TTA
* * ** *
19020179 CGTATAAGACCATGTCTGGGACATTGGCATCGTAT-TTG-ATTT
1 CATGTAAGACCATGTCTGGGACAGAGGCATC-TATATTGAATTA
*
19020221 CATGTAAGACCTTGTCTGGGACAGAGGCATCTATATTGAATTA
1 CATGTAAGACCATGTCTGGGACAGAGGCATCTATATTGAATTA
19020264 CATGTAAGACCATGT
1 CATGTAAGACCATGT
19020279 TCGGGACGTC
Statistics
Matches: 81, Mismatches: 13, Indels: 12
0.76 0.12 0.11
Matches are distributed among these distances:
41 3 0.04
42 31 0.38
43 41 0.51
45 4 0.05
46 1 0.01
47 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCATGTCTGGGACAGAGGCATCTATATTGAATTA
Found at i:19029308 original size:129 final size:128
Alignment explanation
Indices: 19029078--19029311 Score: 283
Period size: 130 Copynumber: 1.8 Consensus size: 128
19029068 ATTTTTTCAT
** * *
19029078 TTTAAAATTCGTACTTTGATTTTTAAAAGGATATTCAGTTGTTTAGATCCAACGAGGAAAATCGA
1 TTTAAAATTCGTACTTTGAAATTTAAAAGGATATTCAGCTATTTAGATCCAACGAGGAAAATCGA
* * *
19029143 AACCCCGTAAGTTAGGGCATGACCTTCTCAAGTTTCTAAACACGGAATATTGCCTTTATCTTA
66 AACCCCGCAAGTTAGGGCATCAACTTCTCAAGTTTCTAAACACGGAATATTGCCTTTATCTTA
* * * * *
19029206 TTTAAAATTCATGTATTTTGAAATTTGAAAGGATATTCGGCTATTTAGGTTCAACGA-GAAAATC
1 TTTAAAATTC--GTACTTTGAAATTTAAAAGGATATTCAGCTATTTAGATCCAACGAGGAAAATC
* * * *
19029270 GAGACCCCGCAAGTTAGGGTA-CAATTTCTCGAATTTTCTAAA
64 GAAACCCCGCAAGTTAGGGCATCAACTTCTC-AAGTTTCTAAA
19029312 TGCGAAACAT
Statistics
Matches: 87, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
128 16 0.18
129 35 0.40
130 36 0.41
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (128 bp):
TTTAAAATTCGTACTTTGAAATTTAAAAGGATATTCAGCTATTTAGATCCAACGAGGAAAATCGA
AACCCCGCAAGTTAGGGCATCAACTTCTCAAGTTTCTAAACACGGAATATTGCCTTTATCTTA
Found at i:19029324 original size:129 final size:128
Alignment explanation
Indices: 19029078--19029327 Score: 279
Period size: 129 Copynumber: 1.9 Consensus size: 128
19029068 ATTTTTTCAT
** * *
19029078 TTTAAAATTCGTACTTTGATTTTTAAAAGGATATTCAGTTGTTTAGATCCAACGAGGAAAATCGA
1 TTTAAAATTCGTACTTTGAAATTTAAAAGGATATTCAGCTATTTAGATCCAACGAGGAAAATCGA
* * * * *
19029143 AACCCCGTAAGTTAGGGCATGACCTTCTCAAGTTTCTAAACACGGAATATTGCCTTTATCTTA
66 AACCCCGCAAGTTAGGGCATCAACTTCTCAAGTTTCTAAACACGAAACATTGCCTTTATCTTA
* * * * *
19029206 TTTAAAATTCATGTATTTTGAAATTTGAAAGGATATTCGGCTATTTAGGTTCAACGA-GAAAATC
1 TTTAAAATTC--GTACTTTGAAATTTAAAAGGATATTCAGCTATTTAGATCCAACGAGGAAAATC
* * * * **
19029270 GAGACCCCGCAAGTTAGGGTA-CAATTTCTCGAATTTTCTAAATGCGAAACATTGCCTT
64 GAAACCCCGCAAGTTAGGGCATCAACTTCTC-AAGTTTCTAAACACGAAACATTGCCTT
19029328 ATTATTGAAA
Statistics
Matches: 99, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
128 16 0.16
129 47 0.47
130 36 0.36
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34
Consensus pattern (128 bp):
TTTAAAATTCGTACTTTGAAATTTAAAAGGATATTCAGCTATTTAGATCCAACGAGGAAAATCGA
AACCCCGCAAGTTAGGGCATCAACTTCTCAAGTTTCTAAACACGAAACATTGCCTTTATCTTA
Found at i:19029550 original size:3 final size:3
Alignment explanation
Indices: 19029542--19029627 Score: 113
Period size: 3 Copynumber: 28.7 Consensus size: 3
19029532 TAGTAACATG
19029542 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
19029590 AAT AAC AA- AAA AGAT AAT AA- AAGT GAT AAT AAT AAT AA
1 AAT AAT AAT AAT A-AT AAT AAT AA-T AAT AAT AAT AAT AA
19029628 AATCTAGATT
Statistics
Matches: 75, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
2 4 0.05
3 68 0.91
4 3 0.04
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:19031461 original size:21 final size:21
Alignment explanation
Indices: 19031419--19031462 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
19031409 GATTTTGAAT
19031419 TAATTCAAATTTATTGTTTGGA
1 TAATTCAAATTTA-TGTTTGGA
19031441 TAATTCAAATTTA-GATTTGGA
1 TAATTCAAATTTATG-TTTGGA
19031462 T
1 T
19031463 TTCAACTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 1 0.05
21 7 0.33
22 13 0.62
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.48
Consensus pattern (21 bp):
TAATTCAAATTTATGTTTGGA
Found at i:19039174 original size:16 final size:16
Alignment explanation
Indices: 19039153--19039222 Score: 113
Period size: 16 Copynumber: 4.4 Consensus size: 16
19039143 AAGAAATTAA
*
19039153 GCCACCAGCGAGTGCT
1 GCCACCAGCAAGTGCT
19039169 GCCACCAGCAAGTGCT
1 GCCACCAGCAAGTGCT
*
19039185 GCCACCAGCTAGTGCT
1 GCCACCAGCAAGTGCT
*
19039201 GCCACCAGCCAGTGCT
1 GCCACCAGCAAGTGCT
19039217 GCCACC
1 GCCACC
19039223 TCCGAATCCC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.20, C:0.41, G:0.26, T:0.13
Consensus pattern (16 bp):
GCCACCAGCAAGTGCT
Found at i:19041809 original size:3 final size:3
Alignment explanation
Indices: 19041741--19041791 Score: 75
Period size: 3 Copynumber: 17.0 Consensus size: 3
19041731 ACAACTTAAG
* * *
19041741 AAT AAC AAT AAC AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
19041789 AAT
1 AAT
19041792 GGTGACAGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:19041866 original size:21 final size:18
Alignment explanation
Indices: 19041840--19041884 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 18
19041830 TTTTAAAATT
19041840 ATAAAAGGATATAAATGAATA
1 ATAAAAGGATA-AAAT-AA-A
*
19041861 ATAAAATGATAAAATAAA
1 ATAAAAGGATAAAATAAA
19041879 ATAAAA
1 ATAAAA
19041885 TAAATATTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 7 0.30
19 2 0.09
20 4 0.17
21 10 0.43
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.22
Consensus pattern (18 bp):
ATAAAAGGATAAAATAAA
Found at i:19043675 original size:45 final size:44
Alignment explanation
Indices: 19043582--19044454 Score: 444
Period size: 44 Copynumber: 19.7 Consensus size: 44
19043572 TGTTTATTTT
* * ***
19043582 TGCTCCACTGCAACTTTAGGG-G-TAAGGTTTGTGGCTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
* *
19043624 TGCTCCACTACAACTTCAGGGAGATAAGATTTGTCATTTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTTTCAATC
* * * * * * ** *
19043669 CGCTCCACTGTAACTTCAGGGATATAAAACTTATAACTTCAACC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
* * * * *
19043713 TGCTCCATTGTAACTTCAGGGAAATAAGATTCGTAGTTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
* * * *
19043757 TGCTCCACTGCAACTTTAGGGAGATAATATTTATAACTTT-AATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTTTCAATC
* * *
19043801 TGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTCGATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATTTTCAATC
* * * * **
19043846 TACTCCACTGCAACTTCAGAGAGATAAGATCTATAACTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
* * ** * *
19043890 TGTTCTAC-G--A--T-A---AGATTTGTAATTTATAACTTT-AATC
1 TGCTCCACTGCAACTTCAGGGAGATAAG--ATTTGT-ATTTTCAATC
* * *
19043927 TG-TCCTACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATC
1 TGCTCC-ACTGCAACTTCAGGGAGATAAGATTTG-TATTTTCAATC
* * * ** *
19043972 TACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATA
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
* * *
19044016 TGCACCACTGCAACTTCAGTGAGATAAGATTTGTAATTTATAGCTTTAATT
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTT-T--C---AATC
* * *
19044067 TGTTCCACTGC-A----AGGGAAATAAGATTTGTTATCTTT-GATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAT-TTTCAATC
* ** * * * * **
19044107 TACTCCACTATAACTTCAAGTAGATAAGATCTATAACTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
* * * *
19044151 TGTTCCACTGCAACTTTAGGGATATAAGATTTGTAATTTATAGTTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG-----TAT--TTTCAATC
* * * ** * *
19044202 TGTTCCACTGCAACTTCAGGGAAATAGGATTCACTATCTTCGATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATT-TGTATTTTCAATC
* * *
19044247 TACTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTT-AATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTTTCAATC
* * * * *
19044291 TACTCCACTACAAC-TCTAAGAAGATAAGATTTGTAGTTTT-AATA
1 TGCTCCACTGCAACTTC-AGGGAGATAAGATTTGTA-TTTTCAATC
* * * * * * *
19044335 TGCTCTACTGCAACTTTAGAGAGATAGGATTTGCTATCTTCGACC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATTTTCAATC
* * * * *
19044380 TTCTCCACTGCAAATTCAAGGAGATAAGGTTTGTAGCTTT-AATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA-TTTTCAATC
*
19044424 TGCTCCACTGCAACTTCAAGGAGATAAGATT
1 TGCTCCACTGCAACTTCAGGGAGATAAGATT
19044455 CACCATAATA
Statistics
Matches: 619, Mismatches: 160, Indels: 102
0.70 0.18 0.12
Matches are distributed among these distances:
35 5 0.01
36 2 0.00
37 13 0.02
38 5 0.01
39 1 0.00
40 10 0.02
41 2 0.00
42 20 0.03
43 8 0.01
44 293 0.47
45 179 0.29
46 25 0.04
47 6 0.01
48 1 0.00
49 2 0.00
50 1 0.00
51 46 0.07
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.34
Consensus pattern (44 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
Found at i:19043728 original size:89 final size:87
Alignment explanation
Indices: 19043616--19044454 Score: 363
Period size: 89 Copynumber: 9.4 Consensus size: 87
19043606 AGGTTTGTGG
* * *
19043616 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTCATTTTCAGTCCGCTCCACTGTA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTTTCAGTCTGCTCCACTGCA
*
19043681 ACTTCAGGGATATAAAACTTATAA
65 ACTTCAGGGAGATAAAA-TTATAA
* * * * * * *
19043705 CTTCAACCTGCTCCATTGTAACTTCAGGGAAATAAGATTCGTAGTTTCAATCTGCTCCACTGCAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAGTCTGCTCCACTGCAA
* *
19043770 CTTTAGGGAGATAATATTTATAA
66 CTTCAGGGAGATAA-AATTATAA
* * * *
19043793 CTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTC-GATCTACTCCACTGC
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATTTTCAG-TCTGCTCCACTGC
* *
19043857 AACTTCAGAGAGATAAGATCTATAA
64 AACTTCAGGGAGATAAAAT-TATAA
* * ** * * *
19043882 CTTCAATCTGTTCTAC-G--A--T-A---AGATTTGTAATTTATAACTTT-AATCTG-TCCTACT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG--ATTTGT-ATTTTCAGTCTGCTCC-ACT
* * * *
19043936 GCAACTTCAGGGAAATAAGATTTGTTAT
62 GCAACTTCAGGGAGATAA-AATT-ATAA
* * * * ** * * *
19043964 CTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATATGCACCACTGCAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAGTCTGCTCCACTGCAA
* *
19044029 CTTCAGTGAGATAAGATTTGTAATTTATAG
66 CTTCAGGGAGAT-A-A-----AA-TTATAA
* * * * * * **
19044059 CTTTAATTTGTTCCACTGC-A----AGGGAAATAAGATTTGTTATCTTTGA-TCTACTCCACTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAT-TTTCAGTCTGCTCCACTGC
* * *
19044118 AACTTCAAGTAGATAAGATCTATAA
64 AACTTCAGGGAGATAAAAT-TATAA
* * * *
19044143 CTTCAATCTGTTCCACTGCAACTTTAGGGATATAAGATTTGTAATTTAT-AGTTTTAATCTGTTC
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTT-TCAG------TCTGCTC
* ** *
19044207 CACTGCAACTTCAGGGAAATAGGATTCACTAT
58 CACTGCAACTTCAGGGAGATAAAATT-A-TAA
* * * * * * *
19044239 CTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTT-AATCTACTCCACTACA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTTTCAGTCTGCTCCACTGCA
* * * * *
19044303 AC-TCTAAGAAGATAAGATTTGTAG
65 ACTTC-AGGGAGATAA-AATTATAA
* * * * * * * * * *
19044327 TTTTAATATGCTCTACTGCAACTTTAGAGAGATAGGATTTGCTATCTTC-GACCTTCTCCACTGC
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATTTTCAG-TCTGCTCCACTGC
* * ** * *
19044391 AAATTCAAGGAGATAAGGTTTGTAG
64 AACTTCAGGGAGATAA-AATTATAA
* *
19044416 CTTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
19044455 CACCATAATA
Statistics
Matches: 557, Mismatches: 139, Indels: 108
0.69 0.17 0.13
Matches are distributed among these distances:
80 8 0.01
81 24 0.04
82 22 0.04
83 3 0.01
84 23 0.04
85 2 0.00
86 1 0.00
87 1 0.00
88 119 0.21
89 213 0.38
90 21 0.04
91 27 0.05
92 3 0.01
94 2 0.00
95 44 0.08
96 44 0.08
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (87 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAGTCTGCTCCACTGCAA
CTTCAGGGAGATAAAATTATAA
Found at i:19043861 original size:133 final size:134
Alignment explanation
Indices: 19043616--19044450 Score: 666
Period size: 133 Copynumber: 6.3 Consensus size: 134
19043606 AGGTTTGTGG
* * * * * * * * *
19043616 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAA-GATTTGTCATTTTCAGTCCGCTCCACTGT
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAATAATTTATAACTTT-AATCTGCTCCACTGC
* * * * * * * * * * *
19043680 AACTTCAGGGATATAAAACTT-ATAACTTCAACCTGCTCCATTGTAACTTCAGGGAAATAAGAT-
65 AACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATC
* *
19043743 TCGTAG
130 T-ATAA
*
19043749 TTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAT-ATTTATAACTTTAATCTGCTCCACTGCA
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAATAATTTATAACTTTAATCTGCTCCACTGCA
* * *
19043813 ACTTCAGAGAGATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGAGAGATAAGATCT
66 ACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCT
19043878 ATAA
131 ATAA
* * **
19043882 CTTCAATCTGTTCTAC-G--A---TA---AGATTTGTAATTTATAACTTTAATCTG-TCCTACTG
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGA-TAATAATTTATAACTTTAATCTGCTCC-ACTG
19043937 CAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGAT
64 CAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGAT
19044002 CTATAA
129 CTATAA
* * * * * * *
19044008 CTTCAATATGCACCACTGCAACTTCAGTGAGATAAGATTTGTAATTTATAGCTTTAATTTGTTCC
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGAT-A-A----TAATTTATAACTTTAATCTGCTCC
* ** * *
19044073 ACTGC-A----AGGGAAATAAGATTTGTTATCTTTGATCTACTCCACTATAACTTCAAGTAGATA
60 ACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATA
19044133 AGATCTATAA
125 AGATCTATAA
* * ** *
19044143 CTTCAATCTGTTCCACTGCAACTTTAGGGATATAAGATTTGTAATTTATAGTTTTAATCTGTTCC
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGAT-A-A----TAATTTATAACTTTAATCTGCTCC
* ***
19044208 ACTGCAACTTCAGGGAAATAGGATTCACTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATA
60 ACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATA
*
19044273 AGATTTATAA
125 AGATCTATAA
* * * * * * * * ** * *
19044283 CTTTAATCTACTCCACTACAACTCTAAGAAGATAA-GATTTGTAGTTTTAATATGCTCTACTGCA
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAATAATTTATAACTTTAATCTGCTCCACTGCA
* * * * * * * * * * *
19044347 ACTTTAGAGAGATAGGATTTGCTATCTTCGACCTTCTCCACTGCAAATTCAAGGAGATAAGGTTT
66 ACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCT
* *
19044412 GTAG
131 ATAA
* * *
19044416 CTTTAATCTGCTCCACTGCAACTTCAAGGAGATAA
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
19044451 GATTCACCAT
Statistics
Matches: 581, Mismatches: 94, Indels: 54
0.80 0.13 0.07
Matches are distributed among these distances:
124 3 0.01
125 5 0.01
126 102 0.18
127 3 0.01
129 1 0.00
130 1 0.00
132 31 0.05
133 200 0.34
134 2 0.00
135 124 0.21
136 1 0.00
138 1 0.00
139 2 0.00
140 102 0.18
141 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (134 bp):
CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAATAATTTATAACTTTAATCTGCTCCACTGCA
ACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCT
ATAA
Found at i:19043954 original size:126 final size:127
Alignment explanation
Indices: 19043785--19044291 Score: 528
Period size: 135 Copynumber: 3.8 Consensus size: 127
19043775 GGGAGATAAT
* * *
19043785 ATTTATAACTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTCGATCTACT
1 ATTTATAACTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACT
19043850 CCACTGCAACTTCAGAGAGATAAGATCTATAACTTCAATCTGTTCT-ACGATAAGATTTGTA
66 CCACTGCAACTTCAGAGAGATAAGATCTATAACTTCAATCTGTTCTGACGATAAGATTTGTA
19043911 ATTTATAACTTTAATCTG-TCCTACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTAC
1 ATTTATAACTTTAATCTGTTCC-ACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTAC
*
19043975 TCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATATGCACCACTGCAACTTCAGTGA-G
65 TCCACTGCAACTTCAGAGAGATAAGATCTATAACTTC-A-AT------CTG----TTC--TGACG
19044039 ATAAGATTTGTA
116 ATAAGATTTGTA
* * *
19044051 ATTTATAGCTTTAATTTGTTCCACTGC-A----AGGGAAATAAGATTTGTTATCTTTGATCTACT
1 ATTTATAACTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACT
**
19044111 CCACTATAACTTCA-AGTAGATAAGATCTATAACTTCAATCTGTTCCACTGCAACTTTAGGGATA
66 CCACTGCAACTTCAGAG-AGATAAGATCTATAACTTCAATCTGTT---CTG--AC------G--A
19044175 TAAGATTTGTA
117 TAAGATTTGTA
** * ***
19044186 ATTTATAGTTTTAATCTGTTCCACTGCAACTTCAGGGAAATAGGATTCACTATCTTCGATCTACT
1 ATTTATAACTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACT
* * *
19044251 CCACTGCAACTTCAGGGAGATAAGATTTATAACTTTAATCT
66 CCACTGCAACTTCAGAGAGATAAGATCTATAACTTCAATCT
19044292 ACTCCACTAC
Statistics
Matches: 322, Mismatches: 21, Indels: 62
0.80 0.05 0.15
Matches are distributed among these distances:
123 2 0.01
124 2 0.01
125 3 0.01
126 96 0.30
127 4 0.01
128 2 0.01
133 3 0.01
134 5 0.02
135 99 0.31
136 1 0.00
138 3 0.01
139 1 0.00
140 96 0.30
141 5 0.02
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (127 bp):
ATTTATAACTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACT
CCACTGCAACTTCAGAGAGATAAGATCTATAACTTCAATCTGTTCTGACGATAAGATTTGTA
Found at i:19044145 original size:135 final size:136
Alignment explanation
Indices: 19043898--19044454 Score: 558
Period size: 140 Copynumber: 4.1 Consensus size: 136
19043888 TCTGTTCTAC
*
19043898 GATAAGATTTGTAATTTATAACTTTAATCTG-TCCTACTGCAACTTCAGGGAAATAAGATTTGTT
1 GATAAGATTTGTAATTTATAGCTTTAATCTGTTCC-ACTGCAA---CAGGGAAATAAGATTTGTT
* *
19043962 ATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATATGCACCACTGC
62 ATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCCACTGC
*
19044027 AACTTCAGTGA
127 AACTTAAG-GA
*
19044038 GATAAGATTTGTAATTTATAGCTTTAATTTGTTCCACTGC-A-AGGGAAATAAGATTTGTTATCT
1 GATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGCAACAGGGAAATAAGATTTGTTATCT
* ** * * *
19044101 TTGATCTACTCCACTATAACTTCAAGTAGATAAGATCTATAACTTCAATCTGTTCCACTGCAACT
66 TCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCCACTGCAAC-
*
19044166 TTAGGGA
130 TTAAGGA
* * * ***
19044173 TATAAGATTTGTAATTTATAGTTTTAATCTGTTCCACTGCAACTTCAGGGAAATAGGATTCACTA
1 GATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGCAA---CAGGGAAATAAGATTTGTTA
* * * *
19044238 TCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATTTATAACTTTAATCTACTCCACTACA
63 TCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCCACTGCA
*
19044303 ACTCTAAGAA
128 ACT-TAAGGA
* * * * * * * *
19044313 GATAAGATTTG-------TAGTTTTAATATGCTCTACTGCAACTTTAGAGAGATAGGATTTGCTA
1 GATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGCAAC---AGGGAAATAAGATTTGTTA
* * * * * * * * *
19044371 TCTTCGACCTTCTCCACTGCAAATTCAAGGAGATAAGGTTTGTAGCTTTAATCTGCTCCACTGCA
63 TCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCCACTGCA
19044436 ACTTCAAGGA
128 ACTT-AAGGA
19044446 GATAAGATT
1 GATAAGATT
19044455 CACCATAATA
Statistics
Matches: 356, Mismatches: 49, Indels: 31
0.82 0.11 0.07
Matches are distributed among these distances:
130 1 0.00
132 1 0.00
133 108 0.30
135 117 0.33
136 4 0.01
139 2 0.01
140 120 0.34
141 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.34
Consensus pattern (136 bp):
GATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGCAACAGGGAAATAAGATTTGTTATCT
TCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCCACTGCAACT
TAAGGA
Found at i:19049285 original size:17 final size:18
Alignment explanation
Indices: 19049263--19049301 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
19049253 TTAATCGTTC
**
19049263 TCTTCTCCTTTTCTTT-T
1 TCTTCTCCAATTCTTTCT
19049280 TCTTCTCCAATTCTTTCT
1 TCTTCTCCAATTCTTTCT
19049298 TCTT
1 TCTT
19049302 TTACTTCACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.05, C:0.31, G:0.00, T:0.64
Consensus pattern (18 bp):
TCTTCTCCAATTCTTTCT
Found at i:19056338 original size:21 final size:18
Alignment explanation
Indices: 19056312--19056356 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 18
19056302 TTTTAAAATT
19056312 ATAAAAGGATATAAATGAATA
1 ATAAAAGGATA-AAAT-AA-A
*
19056333 ATAAAATGATAAAATAAA
1 ATAAAAGGATAAAATAAA
19056351 ATAAAA
1 ATAAAA
19056357 TAAATATTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 7 0.30
19 2 0.09
20 4 0.17
21 10 0.43
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.22
Consensus pattern (18 bp):
ATAAAAGGATAAAATAAA
Found at i:19058733 original size:98 final size:98
Alignment explanation
Indices: 19058585--19058812 Score: 237
Period size: 98 Copynumber: 2.3 Consensus size: 98
19058575 CATCTAAGTG
* * ** * *
19058585 GATGCCATGTCCTAGATAGGTCTTACACT-GACTTCCATA-CATCGAGGCCGATGCCATGTCCCA
1 GATGCCATGTCCCAGACAGGTCTTACACTAG-CTTGTATATC-TTGAAGCCGATGCCATGTCCCA
* * * * * *
19058648 AATAGGTCTTACACTGGCTTTCA-CTTATCTGTGTA
64 AACAAGTCTTACACTAGCTCTCATC-TATCGGTGCA
* ** * *
19058683 GATGCCATGTTCCAGACAGGTCTTACACTAGCTTGTATATCTTGAAGCCGATTTCGTGTCCCAGA
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTTGAAGCCGATGCCATGTCCCAAA
*
19058748 CAAGTCTTACACTAGCTCTCATCTATCGGTGCC
66 CAAGTCTTACACTAGCTCTCATCTATCGGTGCA
*
19058781 GATGCCGTGTCCCAGACAGGTCTTACACTAGC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGC
19058813 ACACACATCA
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
98 104 0.97
99 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (98 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTTGAAGCCGATGCCATGTCCCAAA
CAAGTCTTACACTAGCTCTCATCTATCGGTGCA
Found at i:19058747 original size:49 final size:49
Alignment explanation
Indices: 19058560--19058812 Score: 155
Period size: 49 Copynumber: 5.2 Consensus size: 49
19058550 AAACATGGTA
* * ** * * *
19058560 TTACACTGGCTCTCA-C-ATCTAAGTGGATGCCATGTCCTAGATAGGTC
1 TTACACTAGCTCTCATCTATCGAAGCCGATGCCGTGTCCCAGACAGGTC
* * * *
19058607 TTACACT-GACT-TCCATAC-ATCGAGGCCGATGCCATGTCCCAAATAGGTC
1 TTACACTAG-CTCT-CAT-CTATCGAAGCCGATGCCGTGTCCCAGACAGGTC
* * * ** * *
19058656 TTACACTGGCTTTCA-CTTATCTG-TGTAGATGCCATGTTCCAGACAGGTC
1 TTACACTAGCTCTCATC-TATC-GAAGCCGATGCCGTGTCCCAGACAGGTC
* * ** *
19058705 TTACACTAGCT-T-GTATATCTTGAAGCCGATTTCGTGTCCCAGACAAGTC
1 TTACACTAGCTCTCATCTATC--GAAGCCGATGCCGTGTCCCAGACAGGTC
**
19058754 TTACACTAGCTCTCATCTATCGGTGCCGATGCCGTGTCCCAGACAGGTC
1 TTACACTAGCTCTCATCTATCGAAGCCGATGCCGTGTCCCAGACAGGTC
19058803 TTACACTAGC
1 TTACACTAGC
19058813 ACACACATCA
Statistics
Matches: 162, Mismatches: 30, Indels: 26
0.74 0.14 0.12
Matches are distributed among these distances:
46 2 0.01
47 16 0.10
48 3 0.02
49 132 0.81
50 4 0.02
51 5 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (49 bp):
TTACACTAGCTCTCATCTATCGAAGCCGATGCCGTGTCCCAGACAGGTC
Found at i:19059399 original size:21 final size:21
Alignment explanation
Indices: 19059375--19059417 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
19059365 AAGCTGTTTA
*
19059375 TTTAACAACCAAGATTCTTTT
1 TTTAACAACCAAGATTCCTTT
19059396 TTTAACAACCAAGATTCCTTT
1 TTTAACAACCAAGATTCCTTT
19059417 T
1 T
19059418 CTTCCATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.42
Consensus pattern (21 bp):
TTTAACAACCAAGATTCCTTT
Found at i:19063399 original size:19 final size:19
Alignment explanation
Indices: 19063375--19063415 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
19063365 ACAGGTATAT
19063375 CATGGATGGAAAAGGTACC
1 CATGGATGGAAAAGGTACC
19063394 CATGGATGGAAAAGGTACC
1 CATGGATGGAAAAGGTACC
19063413 CAT
1 CAT
19063416 TATCACATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.29, T:0.17
Consensus pattern (19 bp):
CATGGATGGAAAAGGTACC
Found at i:19071212 original size:45 final size:46
Alignment explanation
Indices: 19071102--19071223 Score: 151
Period size: 45 Copynumber: 2.6 Consensus size: 46
19071092 TAAGAGCCAA
*
19071102 TGTAAGACCATGTCTGGGACATGGTATCGGTATCGAGACGAGTGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GTATCGGCATCGAGACGAGTGCTAG
* *
19071150 TGTAAGACATGTCTGGGACATGTATCGGCCTTGAGACGTA-TGC-AG
1 TGTAAGACATGTCTGGGACATGTATCGGCATCGAGACG-AGTGCTAG
*
19071195 TGTAAGACATG-CTTGGGACATGCATCGGC
1 TGTAAGACATGTC-TGGGACATGTATCGGC
19071224 TATGAGATGA
Statistics
Matches: 68, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
44 1 0.01
45 28 0.41
46 17 0.25
47 15 0.22
48 7 0.10
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGTATCGGCATCGAGACGAGTGCTAG
Found at i:19071277 original size:47 final size:47
Alignment explanation
Indices: 19071192--19071316 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 47
19071182 GAGACGTATG
* *
19071192 CAGTGTAAGACATGCTTGGGACAT-GCATCGGCTATGAGATGAT-AGT
1 CAGTGTAAGACATGCTTGGGACATGGCATCGACTATGAGAT-ATGAGC
* * * *
19071238 TAGTGTAAGATAATGTTTAGGACATGGCATCGACT-TGAGATATGAGC
1 CAGTGTAAGA-CATGCTTGGGACATGGCATCGACTATGAGATATGAGC
19071285 CAGTGTAAGACCATGCTTGGGACATGGCATCG
1 CAGTGTAAGA-CATGCTTGGGACATGGCATCG
19071317 GCACTTTACC
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
46 11 0.17
47 46 0.71
48 8 0.12
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (47 bp):
CAGTGTAAGACATGCTTGGGACATGGCATCGACTATGAGATATGAGC
Found at i:19078750 original size:18 final size:18
Alignment explanation
Indices: 19078723--19078761 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
19078713 ACATGGCATC
*
19078723 AGTATTGAGAAGAGTGCT
1 AGTATCGAGAAGAGTGCT
*
19078741 AGTATCGAGACGAGTGCT
1 AGTATCGAGAAGAGTGCT
19078759 AGT
1 AGT
19078762 GTAAGACATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.31, C:0.10, G:0.33, T:0.26
Consensus pattern (18 bp):
AGTATCGAGAAGAGTGCT
Found at i:19078903 original size:93 final size:94
Alignment explanation
Indices: 19078759--19078930 Score: 233
Period size: 93 Copynumber: 1.8 Consensus size: 94
19078749 GACGAGTGCT
* **
19078759 AGTGTAAGACATGTTTGGGACATGCATCGACCTTGAGACATAAGCCAGTGTAAGA-CATGTTTGG
1 AGTGTAAGACATGTTTGGGACATGCATCGAACTTGAGACATAAGCCAGTGTAAGACCATGCCTGG
19078823 GACAT-GCATCGGCTTCGAGATGATAGTC
66 GACATGGCATCGGCTTCGAGATGATAGTC
* * * *
19078851 AGTGTAAGACCATGTTTGGGACATGGCAT-TAACTTGAGATATGAGCTAGTGTAAGACCATGCCT
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGAACTTGAGACATAAGCCAGTGTAAGACCATGCCT
*
19078915 GGGATATGGCATCGGC
64 GGGACATGGCATCGGC
19078931 ACTTTACCCC
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
92 9 0.13
93 36 0.53
94 15 0.22
95 8 0.12
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (94 bp):
AGTGTAAGACATGTTTGGGACATGCATCGAACTTGAGACATAAGCCAGTGTAAGACCATGCCTGG
GACATGGCATCGGCTTCGAGATGATAGTC
Found at i:19078918 original size:47 final size:44
Alignment explanation
Indices: 19078756--19078907 Score: 171
Period size: 46 Copynumber: 3.3 Consensus size: 44
19078746 CGAGACGAGT
* *
19078756 GCTAGTGTAAGACATGTTTGGGACATGCATCGACCTTGAGACATAA
1 GCTAGTGTAAGACATGTTTGGGACATGCATC-AACTTGAGATAT-A
* **
19078802 GCCAGTGTAAGACATGTTTGGGACATGCATCGGCTTCGAGATGATA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCAACTT-GAGAT-ATA
*
19078848 G-TCAGTGTAAGACCATGTTTGGGACATGGCATTAACTTGAGATATGA
1 GCT-AGTGTAAGA-CATGTTTGGGACAT-GCATCAACTTGAGATAT-A
19078895 GCTAGTGTAAGAC
1 GCTAGTGTAAGAC
19078908 CATGCCTGGG
Statistics
Matches: 91, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
45 3 0.03
46 48 0.53
47 32 0.35
48 8 0.09
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (44 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCAACTTGAGATATA
Found at i:19083324 original size:25 final size:25
Alignment explanation
Indices: 19083296--19083347 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
19083286 ATGTAAATAA
* *
19083296 TACTAGAAAAAAATATAGTTTAATT
1 TACTAAAAAAAAATAAAGTTTAATT
19083321 TACTAAAAAAAAATAAAGTTTAATT
1 TACTAAAAAAAAATAAAGTTTAATT
19083346 TA
1 TA
19083348 ATTAAACTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.35
Consensus pattern (25 bp):
TACTAAAAAAAAATAAAGTTTAATT
Found at i:19085972 original size:40 final size:40
Alignment explanation
Indices: 19085928--19086054 Score: 184
Period size: 40 Copynumber: 3.2 Consensus size: 40
19085918 GGCCATGTAA
*
19085928 GTGCATTTAGGGGTAACGAAGTACAAACAAGGGCACGTAT
1 GTGCATTTAGGGGTACCGAAGTACAAACAAGGGCACGTAT
* *
19085968 GTGCATTTAGGGGTACCGAAGTACAAACATGGGCACGTTT
1 GTGCATTTAGGGGTACCGAAGTACAAACAAGGGCACGTAT
* * *
19086008 GTGCATTCAGGGGTACCGAAGTACAAA-TAGGAGCACATAT
1 GTGCATTTAGGGGTACCGAAGTACAAACAAGG-GCACGTAT
19086048 GTGCATT
1 GTGCATT
19086055 CACTCAATAG
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 2 0.03
40 76 0.97
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (40 bp):
GTGCATTTAGGGGTACCGAAGTACAAACAAGGGCACGTAT
Found at i:19091461 original size:33 final size:33
Alignment explanation
Indices: 19091323--19091466 Score: 94
Period size: 33 Copynumber: 4.3 Consensus size: 33
19091313 TGGCCATGCC
** * *
19091323 ATGGTCTTATGTTCTTAGTGCCATAACCCAATT
1 ATGGTCTTACATTCATAGTGCCATAACCCAACT
* * *
19091356 ATGGTCTTACCA-TCAGAATGCCATAGCCCAACT
1 ATGGTCTTA-CATTCATAGTGCCATAACCCAACT
* * * *** *
19091389 ATGGTCTTATATAT-ATACACTGTCATGGTCCAACC
1 ATGGTCTTACAT-TCAT--AGTGCCATAACCCAACT
* *
19091424 ATGGTCTTACATTCATAGTGCCATAATCCAATT
1 ATGGTCTTACATTCATAGTGCCATAACCCAACT
19091457 ATGGTCTTAC
1 ATGGTCTTAC
19091467 CATTAGAATG
Statistics
Matches: 84, Mismatches: 21, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
32 1 0.01
33 56 0.67
34 2 0.02
35 25 0.30
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.34
Consensus pattern (33 bp):
ATGGTCTTACATTCATAGTGCCATAACCCAACT
Found at i:19091492 original size:101 final size:101
Alignment explanation
Indices: 19091308--19091534 Score: 321
Period size: 101 Copynumber: 2.2 Consensus size: 101
19091298 TCAAGTGCAT
* ** *
19091308 TGCCATGG-CCATGCCATGGTCTTATGTTCTTAGTGCCATAACCCAATTATGGTCTTACCATCAG
1 TGCCATGGTCCA-ACCATGGTCTTACATTCATAGTGCCATAACCCAATTATGGTCTTACCATCAG
*
19091372 AATGCCATAGCCCAACTATGGTCTTATATATATACAC
65 AATGCCATAGCCCAACTATGGTATTATATATATACAC
* * *
19091409 TGTCATGGTCCAACCATGGTCTTACATTCATAGTGCCATAATCCAATTATGGTCTTACCATTAGA
1 TGCCATGGTCCAACCATGGTCTTACATTCATAGTGCCATAACCCAATTATGGTCTTACCATCAGA
* * * *
19091474 ATGTCATAGCCTAGCTATGGTATTATATATATACAT
66 ATGCCATAGCCCAACTATGGTATTATATATATACAC
*
19091510 TGCCATGGTCTAACCATGGTCTTAC
1 TGCCATGGTCCAACCATGGTCTTAC
19091535 GTCTGAATAG
Statistics
Matches: 111, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
101 108 0.97
102 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.33
Consensus pattern (101 bp):
TGCCATGGTCCAACCATGGTCTTACATTCATAGTGCCATAACCCAATTATGGTCTTACCATCAGA
ATGCCATAGCCCAACTATGGTATTATATATATACAC
Found at i:19094354 original size:13 final size:13
Alignment explanation
Indices: 19094338--19094363 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
19094328 CCCTTTATGT
19094338 TTCTCCTTAAATA
1 TTCTCCTTAAATA
19094351 TTCTCCTTAAATA
1 TTCTCCTTAAATA
19094364 ACAAATGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (13 bp):
TTCTCCTTAAATA
Found at i:19095213 original size:24 final size:24
Alignment explanation
Indices: 19095181--19095229 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
19095171 AGAAAGGTGG
*
19095181 AAATTTTTCAACTATAATAATTCA
1 AAATCTTTCAACTATAATAATTCA
*
19095205 AAATCTTTCAGCTATAATAATTCA
1 AAATCTTTCAACTATAATAATTCA
19095229 A
1 A
19095230 TTCTTAAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (24 bp):
AAATCTTTCAACTATAATAATTCA
Found at i:19095242 original size:23 final size:24
Alignment explanation
Indices: 19095192--19095243 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
19095182 AATTTTTCAA
** *
19095192 CTATAATAATTCAAAATCTTTCAG
1 CTATAATAATTCAAAATCTTAAAC
*
19095216 CTATAATAATTC-AATTCTTAAAC
1 CTATAATAATTCAAAATCTTAAAC
19095239 CTATA
1 CTATA
19095244 CAAGTCTCTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 12 0.50
24 12 0.50
ACGTcount: A:0.42, C:0.17, G:0.02, T:0.38
Consensus pattern (24 bp):
CTATAATAATTCAAAATCTTAAAC
Found at i:19096217 original size:13 final size:13
Alignment explanation
Indices: 19096185--19096209 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19096175 AGATATCAAA
19096185 CTTACCATTCATT
1 CTTACCATTCATT
19096198 CTTACCATTCAT
1 CTTACCATTCAT
19096210 ATTTACCACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.44
Consensus pattern (13 bp):
CTTACCATTCATT
Found at i:19096761 original size:45 final size:45
Alignment explanation
Indices: 19096701--19096917 Score: 162
Period size: 45 Copynumber: 4.8 Consensus size: 45
19096691 CGCTCCAAGG
* *
19096701 GATGTCAT-GTCATCTTTCAACCATGGTCTTATTCATTTTCAAAGT
1 GATGTCATAGT-ATCTTTCAACTATGGTCTTATTCATTATCAAAGT
* *
19096746 -AGTGTCATAGTATCTTTCAACTATGGTCTTGA-TCATTATCGATGT
1 GA-TGTCATAGTATCTTTCAACTATGGTCTT-ATTCATTATCAAAGT
* * * *
19096791 GATGCCATAATATCTTTCAACTATGGTCTTATT--TGTAT-AGGATT
1 GATGTCATAGTATCTTTCAACTATGGTCTTATTCAT-TATCA-AAGT
* * * * *
19096835 CAATGTCATAATATCTTTCAACTATAGTCTTATAT-AGTT-TCCAATT
1 -GATGTCATAGTATCTTTCAACTATGGTCTTAT-TCA-TTATCAAAGT
* *
19096881 TATTTTCATAGTATCTTTCAACTATGGTCTTATTCAT
1 GA-TGTCATAGTATCTTTCAACTATGGTCTTATTCAT
19096918 CCCAGTTTGA
Statistics
Matches: 139, Mismatches: 19, Indels: 28
0.75 0.10 0.15
Matches are distributed among these distances:
43 1 0.01
44 6 0.04
45 93 0.67
46 37 0.27
47 1 0.01
48 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.12, T:0.44
Consensus pattern (45 bp):
GATGTCATAGTATCTTTCAACTATGGTCTTATTCATTATCAAAGT
Found at i:19109216 original size:31 final size:31
Alignment explanation
Indices: 19109178--19109242 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
19109168 ATTTATAGTC
19109178 TTTAGAATGCTCAAAAAGCCTAAAAATTGGG
1 TTTAGAATGCTCAAAAAGCCTAAAAATTGGG
19109209 TTTAGAATGCTCAAAAAGCCTAAAAATTGGG
1 TTTAGAATGCTCAAAAAGCCTAAAAATTGGG
19109240 TTT
1 TTT
19109243 TTCTACATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.29
Consensus pattern (31 bp):
TTTAGAATGCTCAAAAAGCCTAAAAATTGGG
Found at i:19120778 original size:49 final size:49
Alignment explanation
Indices: 19120699--19120945 Score: 341
Period size: 49 Copynumber: 5.0 Consensus size: 49
19120689 TCTATTGTGA
*
19120699 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
19120748 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TT
* * * **
19120799 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
19120848 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
19120898 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAAT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
19120946 CTTGTCTACA
Statistics
Matches: 173, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
49 88 0.51
50 45 0.26
51 40 0.23
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:19120835 original size:28 final size:28
Alignment explanation
Indices: 19120803--19120886 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
19120793 AACTTTGATC
19120803 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
19120831 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
19120853 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
19120881 ACGTGT
1 ACGTGT
19120887 ACCAGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:19123450 original size:50 final size:50
Alignment explanation
Indices: 19123391--19123491 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
19123381 TGAATCATAT
19123391 AAAAGGACACGATCCCCAACTATGAATTGTTTGGGCTGCTTCAAACGAGC
1 AAAAGGACACGATCCCCAACTATGAATTGTTTGGGCTGCTTCAAACGAGC
* *
19123441 AAAAGGACACGATCCCCAACTGTGAATTGTTTGGGCTGCTTCAAATGAGC
1 AAAAGGACACGATCCCCAACTATGAATTGTTTGGGCTGCTTCAAACGAGC
19123491 A
1 A
19123492 TCTTGGCGTC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.23
Consensus pattern (50 bp):
AAAAGGACACGATCCCCAACTATGAATTGTTTGGGCTGCTTCAAACGAGC
Found at i:19133812 original size:14 final size:14
Alignment explanation
Indices: 19133776--19133812 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
19133766 GATTTCTCCC
*
19133776 TTTCCCTATTCCTT
1 TTTCCCTTTTCCTT
19133790 TTTCCCTTTTCCTT
1 TTTCCCTTTTCCTT
*
19133804 TTTCTCTTT
1 TTTCCCTTT
19133813 GTCATCCACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.03, C:0.32, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTCCCTTTTCCTT
Found at i:19134179 original size:28 final size:30
Alignment explanation
Indices: 19134140--19134207 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 30
19134130 CTTTTATTCA
19134140 TTATCTTTA-TTTGTTAATTTTTATTATA-T
1 TTAT-TTTATTTTGTTAATTTTTATTATAGT
* *
19134169 TTATTTTATTTTTTGTTATTTTTTATTTTAGT
1 TTATTTTA--TTTTGTTAATTTTTATTATAGT
19134201 TTATTTT
1 TTATTTT
19134208 CATTCTTTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
28 4 0.12
29 4 0.12
31 17 0.52
32 8 0.24
ACGTcount: A:0.19, C:0.01, G:0.04, T:0.75
Consensus pattern (30 bp):
TTATTTTATTTTGTTAATTTTTATTATAGT
Found at i:19134204 original size:17 final size:17
Alignment explanation
Indices: 19134157--19134207 Score: 56
Period size: 15 Copynumber: 3.2 Consensus size: 17
19134147 TATTTGTTAA
*
19134157 TTTTTATTATA-TTTAT
1 TTTTTATTTTAGTTTAT
19134173 TTTATT-TTTT-G-TTAT
1 TTT-TTATTTTAGTTTAT
19134188 TTTTTATTTTAGTTTAT
1 TTTTTATTTTAGTTTAT
19134205 TTT
1 TTT
19134208 CATTCTTTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
14 2 0.07
15 11 0.38
16 7 0.24
17 9 0.31
ACGTcount: A:0.18, C:0.00, G:0.04, T:0.78
Consensus pattern (17 bp):
TTTTTATTTTAGTTTAT
Found at i:19135863 original size:6 final size:6
Alignment explanation
Indices: 19135852--19135904 Score: 52
Period size: 6 Copynumber: 8.7 Consensus size: 6
19135842 TGTTATTTTC
* * * * *
19135852 TTTTAT TTTTAT TATTAGT TTTCAT TTTTAT TTTTCT GTTTAT TTATAT
1 TTTTAT TTTTAT TTTTA-T TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
19135901 TTTT
1 TTTT
19135905 TAGACTCTTT
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
6 32 0.89
7 4 0.11
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.75
Consensus pattern (6 bp):
TTTTAT
Found at i:19148250 original size:25 final size:25
Alignment explanation
Indices: 19148221--19148274 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
19148211 TCTTTAGGGT
19148221 ATTTTT-GGGTTT-TTAATGTTTAAG
1 ATTTTTGGGGTTTGTTAAT-TTTAAG
*
19148245 ATTTTTGGGGTTTGGTTAGTTTTAAG
1 ATTTTTGGGGTTT-GTTAATTTTAAG
19148271 ATTT
1 ATTT
19148275 AAGGTTTTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 6 0.23
25 6 0.23
26 10 0.38
27 4 0.15
ACGTcount: A:0.19, C:0.00, G:0.24, T:0.57
Consensus pattern (25 bp):
ATTTTTGGGGTTTGTTAATTTTAAG
Found at i:19152102 original size:30 final size:30
Alignment explanation
Indices: 19152066--19152141 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
19152056 TGGTTAACCC
* * * *
19152066 ATCCCTTTTCATAATTCGATAATCGAAGTT
1 ATCCCTTTTCATAATTCAACAACCGAAGCT
* *
19152096 ATCCCTTTTCATAGTTCAACAGCCGAAGCT
1 ATCCCTTTTCATAATTCAACAACCGAAGCT
*
19152126 ATCCATTTTCATAATT
1 ATCCCTTTTCATAATT
19152142 TGATGGTTAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (30 bp):
ATCCCTTTTCATAATTCAACAACCGAAGCT
Found at i:19152165 original size:30 final size:30
Alignment explanation
Indices: 19152126--19152319 Score: 112
Period size: 30 Copynumber: 6.5 Consensus size: 30
19152116 AGCCGAAGCT
* * *
19152126 ATCCATTTTCATAATTTGATGGTTATCATC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
**
19152156 ATCCCTTTTCATTGTTTGATGGTCATCACC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
* * *
19152186 AT-CCTTTCTCATAATTTGATAG-C-TGAAGCT
1 ATCCCTTT-TCATAATTTGATGGTCAT-CA-CC
* * * * * *
19152216 ATTCCTTTTCATAAATCGATAGCCGA-AACC
1 ATCCCTTTTCATAATTTGATGGTC-ATCACC
* * * *
19152246 ATCCCTCTTCAAAATTTGATTGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
** *
19152276 ATCTATTTTCAT--TGTTGATGGTCGTCACC
1 ATCCCTTTTCATAAT-TTGATGGTCATCACC
19152305 ATCCCTTTTCATAAT
1 ATCCCTTTTCATAAT
19152320 AGACAACTGA
Statistics
Matches: 124, Mismatches: 29, Indels: 21
0.71 0.17 0.12
Matches are distributed among these distances:
28 2 0.02
29 31 0.25
30 82 0.66
31 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.41
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATGGTCATCACC
Found at i:19152299 original size:29 final size:29
Alignment explanation
Indices: 19152261--19152316 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
19152251 TCTTCAAAAT
* *
19152261 TTGATTGTCGTCACCATCTATTTTCATTG
1 TTGATGGTCGTCACCATCCATTTTCATTG
*
19152290 TTGATGGTCGTCACCATCCCTTTTCAT
1 TTGATGGTCGTCACCATCCATTTTCAT
19152317 AATAGACAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.16, C:0.25, G:0.14, T:0.45
Consensus pattern (29 bp):
TTGATGGTCGTCACCATCCATTTTCATTG
Found at i:19153927 original size:26 final size:26
Alignment explanation
Indices: 19153898--19154005 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
19153888 TGGTACAAAT
19153898 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
19153924 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
19153950 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
19153976 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
19154002 TGAT
1 TGAT
19154006 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:19158158 original size:14 final size:14
Alignment explanation
Indices: 19158139--19158171 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
19158129 TAGTTGATTC
19158139 TTATTAATATGTTG
1 TTATTAATATGTTG
19158153 TTATTAATATGTTG
1 TTATTAATATGTTG
19158167 TTATT
1 TTATT
19158172 GAATGATTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.61
Consensus pattern (14 bp):
TTATTAATATGTTG
Found at i:19159983 original size:45 final size:46
Alignment explanation
Indices: 19159895--19159987 Score: 116
Period size: 48 Copynumber: 2.0 Consensus size: 46
19159885 CCAAAACCAA
* *
19159895 TAAAGACTTAATAATACTTATTAAGAAAAATAACCTGAGGTCCAAGGT
1 TAAAAACTTAATAATACTTATT-A-AAAAATAACCTAAGGTCCAAGGT
* **
19159943 TAAAAACTTAATAATACTTATT-AATAATAGTCTAAGGTCCAAGGT
1 TAAAAACTTAATAATACTTATTAAAAAATAACCTAAGGTCCAAGGT
19159988 GCTTCTCCTA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
45 19 0.47
48 21 0.52
ACGTcount: A:0.45, C:0.12, G:0.13, T:0.30
Consensus pattern (46 bp):
TAAAAACTTAATAATACTTATTAAAAAATAACCTAAGGTCCAAGGT
Found at i:19160569 original size:21 final size:21
Alignment explanation
Indices: 19160528--19160569 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
19160518 AAGAAAGGAA
* **
19160528 ATAATAAAAGAAATACTAAGG
1 ATAATAAAAGAAAAAAAAAGG
19160549 ATAATAAAAGAAAAAAAAAGG
1 ATAATAAAAGAAAAAAAAAGG
19160570 GGGTTATCAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.69, C:0.02, G:0.14, T:0.14
Consensus pattern (21 bp):
ATAATAAAAGAAAAAAAAAGG
Found at i:19162290 original size:80 final size:80
Alignment explanation
Indices: 19162157--19162412 Score: 403
Period size: 80 Copynumber: 3.2 Consensus size: 80
19162147 GATGATAACG
*
19162157 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
19162222 CGAGTTACTA-ATTCC
66 CGAGTTACTATA-TCC
19162237 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
19162302 CGAGTTACTATATCC
66 CGAGTTACTATATCC
** *
19162317 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGA
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGT
19162381 GCGAG-TAGCTATATCC
65 GCGAGTTA-CTATATCC
* *
19162397 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
19162413 TACTTGGTTT
Statistics
Matches: 167, Mismatches: 6, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
79 18 0.11
80 148 0.89
81 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
CGAGTTACTATATCC
Found at i:19162398 original size:40 final size:40
Alignment explanation
Indices: 19162157--19162386 Score: 392
Period size: 40 Copynumber: 5.8 Consensus size: 40
19162147 GATGATAACG
*
19162157 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
19162197 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
19162237 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
19162277 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
**
19162317 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
19162357 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
19162387 AGCTATATCC
Statistics
Matches: 183, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
39 2 0.01
40 181 0.99
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:19169009 original size:20 final size:20
Alignment explanation
Indices: 19168984--19169021 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
19168974 AATGATGATG
* *
19168984 AAAAAAAGAAAAGAGAAAAA
1 AAAAAAAAAAAAAAGAAAAA
19169004 AAAAAAAAAAAAAAGAAA
1 AAAAAAAAAAAAAAGAAA
19169022 GGCTCTCATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (20 bp):
AAAAAAAAAAAAAAGAAAAA
Found at i:19170333 original size:40 final size:40
Alignment explanation
Indices: 19170278--19170575 Score: 422
Period size: 40 Copynumber: 7.5 Consensus size: 40
19170268 TGGATGATAA
* * *
19170278 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
19170318 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
19170358 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
19170398 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
19170438 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
19170478 CCCGGCTAAGTCCCGAAGGCATTGGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
19170518 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
19170558 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
19170576 TACTTGGCTT
Statistics
Matches: 239, Mismatches: 17, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
39 16 0.07
40 223 0.93
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:19180932 original size:12 final size:12
Alignment explanation
Indices: 19180917--19180941 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
19180907 GTGAAAAAAT
19180917 AAAATAAAATAA
1 AAAATAAAATAA
19180929 AAAATAAAATAA
1 AAAATAAAATAA
19180941 A
1 A
19180942 GAACACACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:19185385 original size:5 final size:5
Alignment explanation
Indices: 19185375--19185407 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
19185365 AATTTGTGAA
19185375 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
19185408 GAACACACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:19197453 original size:32 final size:31
Alignment explanation
Indices: 19197407--19197478 Score: 110
Period size: 32 Copynumber: 2.3 Consensus size: 31
19197397 TTGTGCTGAA
*
19197407 TTCTATTCTCCCTCTACCTCATTTTTGACTTT
1 TTCTATTCTTCCTCTACCTCATTTTTGAC-TT
*
19197439 TTCTATTCTTCCTCTACCTTATTTTTGACTT
1 TTCTATTCTTCCTCTACCTCATTTTTGACTT
19197470 TTCT-TTCTT
1 TTCTATTCTT
19197479 TTTCCTTAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 5 0.13
31 6 0.16
32 27 0.71
ACGTcount: A:0.11, C:0.28, G:0.03, T:0.58
Consensus pattern (31 bp):
TTCTATTCTTCCTCTACCTCATTTTTGACTT
Found at i:19198289 original size:29 final size:28
Alignment explanation
Indices: 19198256--19198352 Score: 90
Period size: 29 Copynumber: 3.4 Consensus size: 28
19198246 TAATATGATA
19198256 TGGGCCATATGAATGAGAATTGGGCCTAG
1 TGGGCCATATGAAT-AGAATTGGGCCTAG
* * *
19198285 TGGGCCATAAGAATATGAACTAGGCC-AG
1 TGGGCCATATGAATA-GAATTGGGCCTAG
* * *
19198313 ATGGGTCATTTGAATA-AGATTGGGCCTAA
1 -TGGGCCATATGAATAGA-ATTGGGCCTAG
19198342 TGGGCCATATG
1 TGGGCCATATG
19198353 CATGTATGCA
Statistics
Matches: 53, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
27 1 0.02
28 18 0.34
29 34 0.64
ACGTcount: A:0.30, C:0.14, G:0.31, T:0.25
Consensus pattern (28 bp):
TGGGCCATATGAATAGAATTGGGCCTAG
Found at i:19218872 original size:15 final size:16
Alignment explanation
Indices: 19218847--19218877 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
19218837 AATCTCTCTA
19218847 TTAATAAATTAAAATT
1 TTAATAAATTAAAATT
19218863 TTAA-AAATTAAAATT
1 TTAATAAATTAAAATT
19218878 CTATACTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TTAATAAATTAAAATT
Found at i:19229762 original size:16 final size:16
Alignment explanation
Indices: 19229720--19229765 Score: 56
Period size: 18 Copynumber: 2.7 Consensus size: 16
19229710 TTTAAAATTT
*
19229720 TGTAATGTTTTATATTA
1 TGTAAT-TTATATATTA
19229737 TGCTATATTTATATATTA
1 TG-TA-ATTTATATATTA
19229755 TGTAATTTATA
1 TGTAATTTATA
19229766 ACACATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 7 0.27
17 4 0.15
18 13 0.50
19 2 0.08
ACGTcount: A:0.33, C:0.02, G:0.09, T:0.57
Consensus pattern (16 bp):
TGTAATTTATATATTA
Found at i:19230793 original size:16 final size:16
Alignment explanation
Indices: 19230758--19230793 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
19230748 TACATTAATT
*
19230758 TTCTCTTTTTTATTTT
1 TTCTCTTTTTTATTTC
*
19230774 TTCTCTTTTTTCTTTC
1 TTCTCTTTTTTATTTC
19230790 TTCT
1 TTCT
19230794 TCATTTAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (16 bp):
TTCTCTTTTTTATTTC
Found at i:19231979 original size:38 final size:40
Alignment explanation
Indices: 19231935--19232128 Score: 138
Period size: 38 Copynumber: 4.9 Consensus size: 40
19231925 TTAGAAATGA
*
19231935 TTAATATATATATAAAACAT-ACT-ATATGATATAATAAC
1 TTAATATATATATAAAACATAAATAATATGATATAATAAC
* * *
19231973 TTAATATATTTATAAAA-ATAAATAATAT-ATATAAAATAT
1 TTAATATATATATAAAACATAAATAATATGATATAATA-AC
* * ** * *
19232012 TTAAAATA-ATATAAAAACGATAAATGAGAGTTTTTTTAGAAATGA-
1 TTAATATATATAT-AAAAC-ATAAAT-A-A--TATGATA-TAATAAC
*
19232057 TTAATATATATATAAAACAT-ACT-ATATGATATAATAAC
1 TTAATATATATATAAAACATAAATAATATGATATAATAAC
*
19232095 TTAATATATTTATAAAA-ATAAATAATAT-ATATAA
1 TTAATATATATATAAAACATAAATAATATGATATAA
19232129 AATATTTAAA
Statistics
Matches: 120, Mismatches: 20, Indels: 32
0.70 0.12 0.19
Matches are distributed among these distances:
37 8 0.07
38 56 0.47
39 20 0.17
40 1 0.01
41 6 0.05
42 1 0.01
43 3 0.03
44 2 0.02
45 14 0.12
46 7 0.06
47 2 0.02
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.38
Consensus pattern (40 bp):
TTAATATATATATAAAACATAAATAATATGATATAATAAC
Found at i:19231980 original size:20 final size:18
Alignment explanation
Indices: 19231935--19232008 Score: 76
Period size: 19 Copynumber: 3.9 Consensus size: 18
19231925 TTAGAAATGA
19231935 TTAATATATATATAAAAC
1 TTAATATATATATAAAAC
* *
19231953 ATACTATATGATATAATAAC
1 TTAATATAT-ATATAA-AAC
* *
19231973 TTAATATATTTATAAAAA
1 TTAATATATATATAAAAC
*
19231991 TAAATAATATATATAAAA
1 TTAAT-ATATATATAAAA
19232009 TATTTAAAAT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
18 13 0.29
19 22 0.49
20 10 0.22
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.38
Consensus pattern (18 bp):
TTAATATATATATAAAAC
Found at i:19231991 original size:122 final size:122
Alignment explanation
Indices: 19231878--19232147 Score: 524
Period size: 122 Copynumber: 2.2 Consensus size: 122
19231868 ATAGATGAGG
*
19231878 TATAAAAAATATTTAAAATAATATAAAAACGATAAATGAGAGTTTTTTTAGAAATGATTAATATA
1 TATATAAAATATTTAAAATAATATAAAAACGATAAATGAGAGTTTTTTTAGAAATGATTAATATA
19231943 TATATAAAACATACTATATGATATAATAACTTAATATATTTATAAAAATAAATAATA
66 TATATAAAACATACTATATGATATAATAACTTAATATATTTATAAAAATAAATAATA
19232000 TATATAAAATATTTAAAATAATATAAAAACGATAAATGAGAGTTTTTTTAGAAATGATTAATATA
1 TATATAAAATATTTAAAATAATATAAAAACGATAAATGAGAGTTTTTTTAGAAATGATTAATATA
19232065 TATATAAAACATACTATATGATATAATAACTTAATATATTTATAAAAATAAATAATA
66 TATATAAAACATACTATATGATATAATAACTTAATATATTTATAAAAATAAATAATA
19232122 TATATAAAATATTTAAAATAA-ATAAA
1 TATATAAAATATTTAAAATAATATAAA
19232148 TTATATATAA
Statistics
Matches: 147, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
121 5 0.03
122 142 0.97
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (122 bp):
TATATAAAATATTTAAAATAATATAAAAACGATAAATGAGAGTTTTTTTAGAAATGATTAATATA
TATATAAAACATACTATATGATATAATAACTTAATATATTTATAAAAATAAATAATA
Found at i:19232063 original size:63 final size:63
Alignment explanation
Indices: 19231878--19232068 Score: 198
Period size: 63 Copynumber: 3.1 Consensus size: 63
19231868 ATAGATGAGG
*
19231878 TATAAAAAATATTTAAAATAATATAAAAACGATAAATGAGAGTTTTTTTAGAAATGATTAATA
1 TATATAAAATATTTAAAATAATATAAAAACGATAAATGAGAGTTTTTTTAGAAATGATTAATA
** * * * * * * * * *
19231941 TATATATAAA-ACATACTATATGATATAATAAC--TTAAT---A-TATTTATAAAAATAAATAAT
1 TATATA-AAATATTTA--AAATAATATAAAAACGATAAATGAGAGTTTTTTTAGAAATGATTAAT
19231999 A
63 A
19232000 TATATAAAATATTTAAAATAATATAAAAACGATAAATGAGAGTTTTTTTAGAAATGATTAATA
1 TATATAAAATATTTAAAATAATATAAAAACGATAAATGAGAGTTTTTTTAGAAATGATTAATA
19232063 TATATA
1 TATATA
19232069 TAAAACATAC
Statistics
Matches: 95, Mismatches: 23, Indels: 20
0.69 0.17 0.14
Matches are distributed among these distances:
57 12 0.13
58 3 0.03
59 29 0.31
60 1 0.01
62 1 0.01
63 34 0.36
64 3 0.03
65 12 0.13
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.37
Consensus pattern (63 bp):
TATATAAAATATTTAAAATAATATAAAAACGATAAATGAGAGTTTTTTTAGAAATGATTAATA
Found at i:19232102 original size:20 final size:18
Alignment explanation
Indices: 19232057--19232130 Score: 76
Period size: 19 Copynumber: 3.9 Consensus size: 18
19232047 TTAGAAATGA
19232057 TTAATATATATATAAAAC
1 TTAATATATATATAAAAC
* *
19232075 ATACTATATGATATAATAAC
1 TTAATATAT-ATATAA-AAC
* *
19232095 TTAATATATTTATAAAAA
1 TTAATATATATATAAAAC
*
19232113 TAAATAATATATATAAAA
1 TTAAT-ATATATATAAAA
19232131 TATTTAAAAT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
18 13 0.29
19 22 0.49
20 10 0.22
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.38
Consensus pattern (18 bp):
TTAATATATATATAAAAC
Found at i:19232133 original size:9 final size:9
Alignment explanation
Indices: 19232105--19232165 Score: 52
Period size: 9 Copynumber: 6.7 Consensus size: 9
19232095 TTAATATATT
19232105 TATA-AAAA
1 TATATAAAA
* *
19232113 TAAATAATA
1 TATATAAAA
19232122 TATATAAAA
1 TATATAAAA
*
19232131 TATTTAAAA
1 TATATAAAA
*
19232140 TAAATAAATTA
1 TATATAAA--A
19232151 TATATAAAA
1 TATATAAAA
*
19232160 TGTATA
1 TATATA
19232166 TATAAAAGGA
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
8 3 0.07
9 30 0.73
11 8 0.20
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (9 bp):
TATATAAAA
Found at i:19232148 original size:31 final size:28
Alignment explanation
Indices: 19232100--19232160 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 28
19232090 ATAACTTAAT
*
19232100 ATATTTATAAAAATAAATAATATATATAAA
1 ATATTTAAAAAAATAAAT--TATATATAAA
19232130 ATATTTAAAATAAATAAATTATATATAAA
1 ATATTTAAAA-AAATAAATTATATATAAA
19232159 AT
1 AT
19232161 GTATATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 12 0.41
30 9 0.31
31 8 0.28
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (28 bp):
ATATTTAAAAAAATAAATTATATATAAA
Found at i:19237302 original size:30 final size:31
Alignment explanation
Indices: 19237262--19237319 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
19237252 CAAAATCATA
*
19237262 TTTGTTCAAAATTACAATTTTGCCCCTAAAC
1 TTTGTTCAAAATTACAATTTTACCCCTAAAC
*
19237293 TTTG-TCAAAATTACATTTTTACCCCTA
1 TTTGTTCAAAATTACAATTTTACCCCTA
19237320 GACTCGTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.31, C:0.22, G:0.05, T:0.41
Consensus pattern (31 bp):
TTTGTTCAAAATTACAATTTTACCCCTAAAC
Found at i:19243343 original size:29 final size:30
Alignment explanation
Indices: 19243284--19243341 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
19243274 CATATTTTTT
19243284 TCAAAATTACAATTTTGCCCCTAAACTTTG
1 TCAAAATTACAATTTTGCCCCTAAACTTTG
* *
19243314 TCAAAATTACATTTTTGCCCCTAGACTT
1 TCAAAATTACAATTTTGCCCCTAAACTT
19243342 GTAAATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TCAAAATTACAATTTTGCCCCTAAACTTTG
Found at i:19246058 original size:95 final size:95
Alignment explanation
Indices: 19245895--19246083 Score: 360
Period size: 95 Copynumber: 2.0 Consensus size: 95
19245885 GGATGGAAGA
19245895 TATACGAGTCTATATTCAGGGAAAATTAACGGCAAGTGATTTGGAGTTTTGTAGCTCCAGTTATA
1 TATACGAGTCTATATTCAGGGAAAATTAACGGCAAGTGATTTGGAGTTTTGTAGCTCCAGTTATA
*
19245960 AATAATTTAGTGACTATTGCTTAGGAAAAT
66 AATAATTTAGTGACTATTGCTCAGGAAAAT
*
19245990 TATACGAGTCTATATTCAGGGAAAATTAACGGCAAGTGATTTGGAGTTTTTTAGCTCCAGTTATA
1 TATACGAGTCTATATTCAGGGAAAATTAACGGCAAGTGATTTGGAGTTTTGTAGCTCCAGTTATA
19246055 AATAATTTAGTGACTATTGCTCAGGAAAA
66 AATAATTTAGTGACTATTGCTCAGGAAAA
19246084 CAGCTCGTAG
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 92 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (95 bp):
TATACGAGTCTATATTCAGGGAAAATTAACGGCAAGTGATTTGGAGTTTTGTAGCTCCAGTTATA
AATAATTTAGTGACTATTGCTCAGGAAAAT
Found at i:19246503 original size:47 final size:47
Alignment explanation
Indices: 19246434--19246559 Score: 225
Period size: 47 Copynumber: 2.7 Consensus size: 47
19246424 TTTTATGTGT
*
19246434 ATATATGCGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
*
19246481 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
*
19246528 ATATATGTGATAAGGCCGAATGGCTAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
19246560 AATACGTATG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 75 1.00
ACGTcount: A:0.35, C:0.13, G:0.26, T:0.26
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
Found at i:19246598 original size:48 final size:48
Alignment explanation
Indices: 19246529--19246761 Score: 342
Period size: 48 Copynumber: 4.8 Consensus size: 48
19246519 TGAACATGCA
* * *
19246529 TATATGTGATAAGGCCGAATGGCTAATGTGAAATACGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
19246577 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
19246625 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
* * *
19246675 TAAATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
19246723 TATATGTGGTAAAGCCGAATGACTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
19246762 GGCGATGTGC
Statistics
Matches: 168, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
47 1 0.01
48 123 0.73
49 4 0.02
50 39 0.23
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:19246683 original size:98 final size:96
Alignment explanation
Indices: 19246530--19246757 Score: 332
Period size: 98 Copynumber: 2.4 Consensus size: 96
19246520 GAACATGCAT
* * * * *
19246530 ATATGTGATAAGGCCGAATGGCTAATGTGAAATACGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATGTAAATGTGGTAAAGCCAA
19246595 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
*
19246626 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTAAATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATACATATGAGATATGTAAATGTGGTAAAGC
* *
19246690 CAAATGGCTAGTGTGAAATATGTATGAGATATGT
63 CAAATGGCTAATGTGAAATATGTATGAGATATGC
* *
19246724 ATATGTGGTAAAGCCGAATGACTAGTGTGAAATA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
19246758 TGTAGGCGAT
Statistics
Matches: 118, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
95 1 0.01
96 28 0.24
97 4 0.03
98 84 0.71
99 1 0.01
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.29
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATGTAAATGTGGTAAAGCCAA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:19247016 original size:37 final size:37
Alignment explanation
Indices: 19246908--19247016 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
19246898 GGAAATATAT
*
19246908 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
19246945 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
19246982 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
19247017 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:19254344 original size:47 final size:47
Alignment explanation
Indices: 19254275--19254400 Score: 225
Period size: 47 Copynumber: 2.7 Consensus size: 47
19254265 TTTTATGTGT
*
19254275 ATATATGCGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
*
19254322 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
*
19254369 ATATATGTGATAAGGCCGAATGGCTAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
19254401 AATACGTATG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 75 1.00
ACGTcount: A:0.35, C:0.13, G:0.26, T:0.26
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
Done.