Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 69 of 167
Found at i:21919040 original size:98 final size:97
Alignment explanation
Indices: 21918739--21919094 Score: 270
Period size: 98 Copynumber: 3.8 Consensus size: 97
21918729 TGATATGTGT
* * * * *
21918739 GCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCCA-C-AT-TATAAGAGCCAGTGTAAGACAT
1 GCTAGTGTAAGACCTATCTGGGACATGGCATC-GACACCGATAGATGAGAGCCAGTGTAAGACAT
* * * *
21918800 GTCT-GGACATGCATCGGCCAC-A-TTATAAGA
65 GTCTGGGACACGCATCGGCCTCGAGATATAAAA
* * * * * * * ** * * **
21918830 GCCAGTGTAAAACATGTTTGGGACAT-ACATCGGCA-TTA-ATACGAGAGTTAGTGTAAGACATG
1 GCTAGTGTAAGACCTATCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAAGACATG
* * *
21918892 TCTGGGACATGCATCGGCCTTGAGATATACAA
66 TCTGGGACACGCATCGGCCTCGAGATATAAAA
* * *
21918924 GCTAGTGTAATACCTATCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAAGACCTT
1 GCTAGTGTAAGACCTATCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAAGACATG
*
21918989 TCTGGGACACGACATCGGCCTCGATATATAAAA
66 TCTGGGACACG-CATCGGCCTCGAGATATAAAA
* *** **
21919022 G-TCAGTGTAAGACCTATCTTGGACATGGCATCGACTTTGAT-G-TGCTAGCCAGTGTAAGACCA
1 GCT-AGTGTAAGACCTATCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAAGA-CA
21919084 TGTCTGGGACA
64 TGTCTGGGACA
21919095 TGGCGTCGGC
Statistics
Matches: 211, Mismatches: 43, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
90 3 0.01
91 50 0.24
92 15 0.07
93 1 0.00
94 26 0.12
95 7 0.03
96 16 0.08
97 41 0.19
98 52 0.25
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.24
Consensus pattern (97 bp):
GCTAGTGTAAGACCTATCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAAGACATG
TCTGGGACACGCATCGGCCTCGAGATATAAAA
Found at i:21920524 original size:46 final size:46
Alignment explanation
Indices: 21920474--21920646 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
21920464 TGGTTGAGCA
*
21920474 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
21920520 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
21920567 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
21920613 -CTCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
21920647 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 58 0.56
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:21920630 original size:93 final size:93
Alignment explanation
Indices: 21920471--21920641 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
21920461 GGATGGTTGA
* *
21920471 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAGCTCATTGAGT
21920536 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
21920564 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CTCGAGCTCATTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC-CGAGCTCATTGAG
21920628 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
21920642 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAGCTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:21928192 original size:26 final size:27
Alignment explanation
Indices: 21928147--21928245 Score: 132
Period size: 26 Copynumber: 3.7 Consensus size: 27
21928137 AAACACATTA
21928147 GAAAATGAAAGCCTTTGTGGCGAACCAT
1 GAAAA-GAAAGCCTTTGTGGCGAACCAT
*
21928175 GAAAAGAAAG-CTTTGTGGAGAACCAT
1 GAAAAGAAAGCCTTTGTGGCGAACCAT
*
21928201 G-AAAGAAAGCCTTTGT-GCAAACCAT
1 GAAAAGAAAGCCTTTGTGGCGAACCAT
* *
21928226 GAAAATAAAGCCTTTATGGC
1 GAAAAGAAAGCCTTTGTGGC
21928246 AAATCTTTGA
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
25 16 0.25
26 35 0.56
27 7 0.11
28 5 0.08
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.21
Consensus pattern (27 bp):
GAAAAGAAAGCCTTTGTGGCGAACCAT
Found at i:21928361 original size:27 final size:27
Alignment explanation
Indices: 21928331--21928415 Score: 98
Period size: 27 Copynumber: 3.1 Consensus size: 27
21928321 CCTCTGTGGA
* *
21928331 GAACTTTAAAAGAATGGTACTCATGGC
1 GAACTATAAAGGAATGGTACTCATGGC
* * * *
21928358 GAACCATAATGGAATGGTACTTAGGGC
1 GAACTATAAAGGAATGGTACTCATGGC
* *
21928385 GAACTATGAAGGAATGGTATTCATGGC
1 GAACTATAAAGGAATGGTACTCATGGC
21928412 GAAC
1 GAAC
21928416 AACGAAAGAA
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (27 bp):
GAACTATAAAGGAATGGTACTCATGGC
Found at i:21930557 original size:40 final size:40
Alignment explanation
Indices: 21930502--21930578 Score: 154
Period size: 40 Copynumber: 1.9 Consensus size: 40
21930492 ATATGTGTAC
21930502 GGAAATTTTGTGTATTTTGTGATTTTGTGAATTAGGGTAA
1 GGAAATTTTGTGTATTTTGTGATTTTGTGAATTAGGGTAA
21930542 GGAAATTTTGTGTATTTTGTGATTTTGTGAATTAGGG
1 GGAAATTTTGTGTATTTTGTGATTTTGTGAATTAGGG
21930579 ACTAAAATGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.23, C:0.00, G:0.29, T:0.48
Consensus pattern (40 bp):
GGAAATTTTGTGTATTTTGTGATTTTGTGAATTAGGGTAA
Found at i:21931137 original size:43 final size:43
Alignment explanation
Indices: 21930983--21931138 Score: 167
Period size: 43 Copynumber: 3.6 Consensus size: 43
21930973 TGTGTTTTTG
* *
21930983 GTAAGACCGCGTCTGGGACGTTGGCATCGACT-TATGATTTACGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTACGT
* * * *
21931027 GTAAGACCATGTCTGGGACATCGGCATCG-TATTTGATTTCGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACGT
* *
21931069 GTAAGACC-CTGTTTGGGACAG-TGGCATCGATATTTGATTACAT
1 GTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTACGT
*
21931112 GTAAGACCACGTCTGGAACGTTGGCAT
1 GTAAGACCACGTCTGGGACGTTGGCAT
21931139 TGTATGAGCT
Statistics
Matches: 92, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
42 30 0.33
43 36 0.39
44 26 0.28
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (43 bp):
GTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACGT
Found at i:21938470 original size:27 final size:27
Alignment explanation
Indices: 21938439--21938616 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
21938429 TAAATTGTAC
21938439 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
21938466 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
21938492 ATGCACTAAGTGTGCGAATTGACCATGT
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
21938520 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
21938548 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
21938575 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
21938602 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21938617 GACTCAATAT
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:21938553 original size:82 final size:81
Alignment explanation
Indices: 21938440--21938595 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
21938430 AAATTGTACA
* *
21938440 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
21938504 TGCGAATTGACCATGTG
65 TGCGAATTGACCATGTG
** *
21938521 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
21938586 TGCGAGTTGA
65 TGCGAATTGA
21938596 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGTG
Found at i:21938607 original size:82 final size:81
Alignment explanation
Indices: 21938439--21938616 Score: 232
Period size: 82 Copynumber: 2.2 Consensus size: 81
21938429 TAAATTGTAC
* *
21938439 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
*
21938504 TGCGAATTGACCATGT
66 TGCGAATTGACCATAT
* ** *
21938520 GGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAG
1 AGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAG
* **
21938584 TGTGCGAGTTGATTATAT
64 TGTGCGAATTGACCATAT
*
21938602 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21938617 GACTCAATAT
Statistics
Matches: 83, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
81 16 0.19
82 67 0.81
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
TGCGAATTGACCATAT
Found at i:21946447 original size:27 final size:27
Alignment explanation
Indices: 21946409--21946588 Score: 175
Period size: 27 Copynumber: 6.6 Consensus size: 27
21946399 TAAATTGTAC
*
21946409 AGCACTAAGTGTGCGGTTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
21946436 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
21946462 ATGCACTAAGTGTGCGAATTGA-TCATGC
1 A-GCACTAAGTGTGCGATTTGACT-ATGT
*
21946490 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
21946518 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
21946545 AGCACTAAGTGTGCGAGTTGATTATATAT
1 AGCACTAAGTGTGCGATTTGA--CTATGT
*
21946574 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21946589 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.01
27 87 0.68
28 22 0.17
29 18 0.14
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:21946523 original size:82 final size:81
Alignment explanation
Indices: 21946410--21946566 Score: 235
Period size: 82 Copynumber: 1.9 Consensus size: 81
21946400 AAATTGTACA
* *
21946410 GCACTAAGTGTGCGGTTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
21946474 TGCGAATTGATCATGCG
65 TGCGAATTGATCATGCG
** *
21946491 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCG-GTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
21946556 TGCGAGTTGAT
65 TGCGAATTGAT
21946567 TATATATAGC
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 14 0.21
82 53 0.78
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.31
Consensus pattern (81 bp):
GCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGATCATGCG
Found at i:21946533 original size:55 final size:54
Alignment explanation
Indices: 21946409--21946563 Score: 179
Period size: 55 Copynumber: 2.9 Consensus size: 54
21946399 TAAATTGTAC
* * **
21946409 AGCACTAAGTGTGCGGTTTGA-CTATGTTGCACTAAGTGTGCGA-AATGAATATG
1 AGCACTAAGTGTGCGATTTGATC-ATGTAGCACTAAGTGTGCGAGTTTGAATATG
* ** *
21946462 ATGCACTAAGTGTGCGAATTGATCATGCGGCACTAAGTGTGCGAGTTTGACTATG
1 A-GCACTAAGTGTGCGATTTGATCATGTAGCACTAAGTGTGCGAGTTTGAATATG
* *
21946517 TAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTT
1 -AGCACTAAGTGTGCGATTTGATCATGTAGCACTAAGTGTGCGAGTT
21946564 GATTATATAT
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
53 1 0.01
54 36 0.42
55 48 0.56
56 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGATCATGTAGCACTAAGTGTGCGAGTTTGAATATG
Found at i:21946599 original size:29 final size:29
Alignment explanation
Indices: 21946544--21946599 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
21946534 TTTGATTACG
* * *
21946544 TAGCACTAAGTGTGCGAGTTGATTATATA
1 TAGCACTAAGTGTGCGAGCTCAATATATA
* *
21946573 TAGCACTGAGTGTGCGGGCTCAATATA
1 TAGCACTAAGTGTGCGAGCTCAATATA
21946600 CATTCGTGAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (29 bp):
TAGCACTAAGTGTGCGAGCTCAATATATA
Found at i:21950264 original size:40 final size:40
Alignment explanation
Indices: 21950220--21950322 Score: 161
Period size: 40 Copynumber: 2.6 Consensus size: 40
21950210 TCTTCGAGGT
* * *
21950220 TTAGCACGGATATATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGAAC
* *
21950260 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGAAC
21950300 TTAGCCCGGATATATCACTAGCA
1 TTAGCCCGGATATATCACTAGCA
21950323 ATTCTCATGT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGAAC
Found at i:21950509 original size:40 final size:40
Alignment explanation
Indices: 21950465--21950604 Score: 271
Period size: 40 Copynumber: 3.5 Consensus size: 40
21950455 TCATAACACT
21950465 CTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGA
1 CTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGA
21950505 CTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGA
1 CTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGA
*
21950545 CTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGG
1 CTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGA
21950585 CTTAGCCCGGATATATCACT
1 CTTAGCCCGGATATATCACT
21950605 CTCAATTCTC
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGA
Found at i:21950738 original size:286 final size:286
Alignment explanation
Indices: 21950220--21950753 Score: 996
Period size: 286 Copynumber: 1.9 Consensus size: 286
21950210 TCTTCGAGGT
* *
21950220 TTAGCACGGATATATTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACG
1 TTAGCACGGATATATCACTAGCACGAATGCTCCTCGGAACTTAGCCCGGATACATCACTAGCACG
21950285 AATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCAATTCTCATGTACATATACACATATAGC
66 AATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCAATTCTCATGTACATATACACATATAGC
21950350 AATACACATTAGTATATCATTTACATTACTTGAATGCAAACACAACATGCTTATCGACCATTCAA
131 AATACACATTAGTATATCATTTACATTACTTGAATGCAAACACAACATGCTTATCGACCATTCAA
21950415 CTTCCAGTTCCATAGCCACATACAAAAATCACATTTATAGTCATAACACTCTTAGCCCGGATATA
196 CTTCCAGTTCCATAGCCACATACAAAAATCACATTTATAGTCATAACACTCTTAGCCCGGATATA
21950480 TCACTAGCACGAATGCTCCTCGGGAC
261 TCACTAGCACGAATGCTCCTCGGGAC
* * *
21950506 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACG
1 TTAGCACGGATATATCACTAGCACGAATGCTCCTCGGAACTTAGCCCGGATACATCACTAGCACG
* **
21950571 AATGCTCCTCGGGGCTTAGCCCGGATATATCACTCTCAATTCTCATGTACATATACACATATAGC
66 AATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCAATTCTCATGTACATATACACATATAGC
21950636 AATACACATTAGTATATCATTTACATTACTTGAATGCAAACACAACATGCTTATCGACCATTCAA
131 AATACACATTAGTATATCATTTACATTACTTGAATGCAAACACAACATGCTTATCGACCATTCAA
21950701 CTTCCAGTTCCATAGCCACATACAAAAATCACATTTATAGTCATAACACTCTT
196 CTTCCAGTTCCATAGCCACATACAAAAATCACATTTATAGTCATAACACTCTT
21950754 TCAAAATTGC
Statistics
Matches: 240, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
286 240 1.00
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (286 bp):
TTAGCACGGATATATCACTAGCACGAATGCTCCTCGGAACTTAGCCCGGATACATCACTAGCACG
AATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCAATTCTCATGTACATATACACATATAGC
AATACACATTAGTATATCATTTACATTACTTGAATGCAAACACAACATGCTTATCGACCATTCAA
CTTCCAGTTCCATAGCCACATACAAAAATCACATTTATAGTCATAACACTCTTAGCCCGGATATA
TCACTAGCACGAATGCTCCTCGGGAC
Found at i:21956327 original size:48 final size:47
Alignment explanation
Indices: 21956260--21956432 Score: 197
Period size: 42 Copynumber: 3.9 Consensus size: 47
21956250 GCATCAGTGA
21956260 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT
1 GATATGTGA-TCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT
*
21956308 GATATGTGATCCGTATAAGACCATAGCTGGGCTATGGCATCGATATGT
1 GATATGTGAT-CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT
*
21956356 GA-A---CAT-GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGT
1 GATATGTGATCGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATGT
* **
21956398 GA-A---GAT-GTGTAAGACCATAGTTGAACTATGGCATC
1 GATATGTGATCGTGTAAGACCATAGCTGGGCTATGGCATC
21956433 AAGAAAAAGA
Statistics
Matches: 116, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
41 1 0.01
42 64 0.55
44 2 0.02
47 2 0.02
48 47 0.41
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (47 bp):
GATATGTGATCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT
Found at i:21962265 original size:46 final size:46
Alignment explanation
Indices: 21962201--21962323 Score: 158
Period size: 46 Copynumber: 2.7 Consensus size: 46
21962191 CTGCGAGGTC
* * **
21962201 GATGCATGTCCTAGACATGTCTTATACTAGCTCTTGT-CTCAATGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCCCGTGCTCAA-GCT
* * **
21962247 GATGCATGTCCGAGACATGTCTTACACTTGCTCCCGTGCTGTAGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCCCGTGCTCAAGCT
21962293 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
21962324 ACACATATCA
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
46 64 0.96
47 3 0.04
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCCCGTGCTCAAGCT
Found at i:21962704 original size:30 final size:30
Alignment explanation
Indices: 21962661--21962717 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
21962651 TATAATTGGG
* * *
21962661 CAAAATGATCATTTTGCCCCTAGACTTTCA
1 CAAAATAACCATTTTACCCCTAGACTTTCA
21962691 CAAAATAACCATTTTACCCCTAGACTT
1 CAAAATAACCATTTTACCCCTAGACTT
21962718 GAAAATTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.28, G:0.07, T:0.32
Consensus pattern (30 bp):
CAAAATAACCATTTTACCCCTAGACTTTCA
Found at i:21965029 original size:34 final size:34
Alignment explanation
Indices: 21964974--21965055 Score: 139
Period size: 34 Copynumber: 2.4 Consensus size: 34
21964964 TATTTATAAT
* *
21964974 TTAATCCCAAA-CTAGTTAGGACTAAAAGAACAA
1 TTAATCCAAAAGCTAATTAGGACTAAAAGAACAA
21965007 TTAATCCAAAAGCTAATTAGGACTAAAAGAACAA
1 TTAATCCAAAAGCTAATTAGGACTAAAAGAACAA
21965041 TTAATCCAAAAGCTA
1 TTAATCCAAAAGCTA
21965056 GTGGATTCAA
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
33 10 0.22
34 36 0.78
ACGTcount: A:0.50, C:0.17, G:0.11, T:0.22
Consensus pattern (34 bp):
TTAATCCAAAAGCTAATTAGGACTAAAAGAACAA
Found at i:21965051 original size:17 final size:17
Alignment explanation
Indices: 21964997--21965052 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 17
21964987 AGTTAGGACT
21964997 AAAAGAACAATTAATCC
1 AAAAGAACAATTAATCC
*
21965014 AAAAG--CTAATTAGGA-CT
1 AAAAGAAC-AATTA--ATCC
21965031 AAAAGAACAATTAATCC
1 AAAAGAACAATTAATCC
21965048 AAAAG
1 AAAAG
21965053 CTAGTGGATT
Statistics
Matches: 31, Mismatches: 2, Indels: 12
0.69 0.04 0.27
Matches are distributed among these distances:
15 1 0.03
16 6 0.19
17 17 0.55
18 6 0.19
19 1 0.03
ACGTcount: A:0.57, C:0.14, G:0.11, T:0.18
Consensus pattern (17 bp):
AAAAGAACAATTAATCC
Found at i:21967715 original size:33 final size:33
Alignment explanation
Indices: 21967673--21967739 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
21967663 ACCATTGCTC
21967673 ACATAAAATTTGCTAGGCATAAAGCCTAGTATA
1 ACATAAAATTTGCTAGGCATAAAGCCTAGTATA
21967706 ACATAAAATTTGCTAGGCATAAAGCCTAGTATA
1 ACATAAAATTTGCTAGGCATAAAGCCTAGTATA
21967739 A
1 A
21967740 TACACATTGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (33 bp):
ACATAAAATTTGCTAGGCATAAAGCCTAGTATA
Found at i:21967888 original size:42 final size:42
Alignment explanation
Indices: 21967813--21967928 Score: 135
Period size: 42 Copynumber: 2.8 Consensus size: 42
21967803 ACAGAACCTG
* * * * *
21967813 CTAGGCAAT-AGGCCTGACATAATACACTAGCATAAAGTTTA
1 CTAGGCAATAAAGCCCGATATAATACACCAGCATAAAGTCTA
* *
21967854 CTAGGCAATAAAGCCCGATATAATACACCGGCATAAAGTCTG
1 CTAGGCAATAAAGCCCGATATAATACACCAGCATAAAGTCTA
* * *
21967896 CTAGGCAACAAAGCCCAATTTAATACACCAGCA
1 CTAGGCAATAAAGCCCGATATAATACACCAGCA
21967929 CAAGGCTTGC
Statistics
Matches: 63, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
41 9 0.14
42 54 0.86
ACGTcount: A:0.40, C:0.24, G:0.16, T:0.20
Consensus pattern (42 bp):
CTAGGCAATAAAGCCCGATATAATACACCAGCATAAAGTCTA
Found at i:21978203 original size:30 final size:29
Alignment explanation
Indices: 21978162--21978219 Score: 98
Period size: 30 Copynumber: 2.0 Consensus size: 29
21978152 AGTAGCCGAA
*
21978162 GCTAGTTAAATCGCACACTTAGTGCCAAG
1 GCTAGTTAAATCGCACACTTAGTACCAAG
21978191 GCTAGTTTAAATCGCACACTTAGTACCAA
1 GCTAG-TTAAATCGCACACTTAGTACCAA
21978220 AACTTCCGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 5 0.19
30 22 0.81
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (29 bp):
GCTAGTTAAATCGCACACTTAGTACCAAG
Found at i:21985159 original size:224 final size:224
Alignment explanation
Indices: 21984769--21985215 Score: 876
Period size: 224 Copynumber: 2.0 Consensus size: 224
21984759 AATAAAATCC
21984769 AGCCTATACATGCAATAATTCGAGTTCAACTATATAAATACCAAAGCAGTAGATAGTGTGATGAA
1 AGCCTATACATGCAATAATTCGAGTTCAACTATATAAATACCAAAGCAGTAGATAGTGTGATGAA
21984834 CTTTGCTGACGATCCCCGAGCTTGTAACTTGATCCAAAATCTATAAAATAGAAACACACATATAC
66 CTTTGCTGACGATCCCCGAGCTTGTAACTTGATCCAAAATCTATAAAATAGAAACACACATATAC
21984899 ACAGAATAAGCTAACTTAGCTTAGAAAATTATAAGCAATTTAAACAAATTAATGATCTTGATAGA
131 ACAGAATAAGCTAACTTAGCTTAGAAAATTATAAGCAATTTAAACAAATTAATGATCTTGATAGA
21984964 TCAATAAAATAAAACCAAAATCAAAAATT
196 TCAATAAAATAAAACCAAAATCAAAAATT
* *
21984993 AGCCTATACATGCCATAATTCGAGTTCAACTATATAAATACCAAAGTAGTAGATAGTGTGATGAA
1 AGCCTATACATGCAATAATTCGAGTTCAACTATATAAATACCAAAGCAGTAGATAGTGTGATGAA
21985058 CTTTGCTGACGATCCCCGAGCTTGTAACTTGATCCAAAATCTATAAAATAGAAACACACATATAC
66 CTTTGCTGACGATCCCCGAGCTTGTAACTTGATCCAAAATCTATAAAATAGAAACACACATATAC
21985123 ACAGAATAAGCTAACTTAGCTTAGAAAATTATAAGCAATTTAAACAAATTAATGATCTTGATAGA
131 ACAGAATAAGCTAACTTAGCTTAGAAAATTATAAGCAATTTAAACAAATTAATGATCTTGATAGA
21985188 TCAATAAAATAAAACCAAAATCAAAAAT
196 TCAATAAAATAAAACCAAAATCAAAAAT
21985216 ATATATTTAT
Statistics
Matches: 221, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
224 221 1.00
ACGTcount: A:0.45, C:0.17, G:0.12, T:0.26
Consensus pattern (224 bp):
AGCCTATACATGCAATAATTCGAGTTCAACTATATAAATACCAAAGCAGTAGATAGTGTGATGAA
CTTTGCTGACGATCCCCGAGCTTGTAACTTGATCCAAAATCTATAAAATAGAAACACACATATAC
ACAGAATAAGCTAACTTAGCTTAGAAAATTATAAGCAATTTAAACAAATTAATGATCTTGATAGA
TCAATAAAATAAAACCAAAATCAAAAATT
Found at i:21985672 original size:42 final size:43
Alignment explanation
Indices: 21985603--21985713 Score: 167
Period size: 42 Copynumber: 2.7 Consensus size: 43
21985593 ACAGAACCTG
* *
21985603 CTAGGCAAT-AGGCCTGAC-ATAATACACTGGCATAAAGCCTA
1 CTAGGCAATAAAGCCCGACTATAATACACTGGCATAAAGCCTA
*
21985644 CTAGGCAATAAAGTCCGA-TATAATACACTGGCATAAAGCCTA
1 CTAGGCAATAAAGCCCGACTATAATACACTGGCATAAAGCCTA
21985686 CTAGGCAATAAAGCCCGACT-TAATACAC
1 CTAGGCAATAAAGCCCGACTATAATACAC
21985714 CAGCACAAGG
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
41 9 0.14
42 53 0.84
43 1 0.02
ACGTcount: A:0.39, C:0.24, G:0.17, T:0.20
Consensus pattern (43 bp):
CTAGGCAATAAAGCCCGACTATAATACACTGGCATAAAGCCTA
Found at i:21996869 original size:15 final size:16
Alignment explanation
Indices: 21996843--21996872 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
21996833 AAAATCAGAT
21996843 AAAAATGCAAAAGAAA
1 AAAAATGCAAAAGAAA
21996859 AAAAATG-AAAAGAA
1 AAAAATGCAAAAGAA
21996873 TGTGTTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.77, C:0.03, G:0.13, T:0.07
Consensus pattern (16 bp):
AAAAATGCAAAAGAAA
Found at i:22002426 original size:9 final size:9
Alignment explanation
Indices: 22002414--22002443 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
22002404 AAAAAATTTT
22002414 AAAAAAATC
1 AAAAAAATC
*
22002423 AAAAAAATT
1 AAAAAAATC
22002432 AAAAAAATC
1 AAAAAAATC
22002441 AAA
1 AAA
22002444 CAATAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.13
Consensus pattern (9 bp):
AAAAAAATC
Found at i:22004212 original size:11 final size:11
Alignment explanation
Indices: 22004198--22004228 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
22004188 AAATAGCAAC
22004198 AAAACAATAAA
1 AAAACAATAAA
22004209 AAAACAATAAA
1 AAAACAATAAA
22004220 AAAACAATA
1 AAAACAATA
22004229 GTTTTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.81, C:0.10, G:0.00, T:0.10
Consensus pattern (11 bp):
AAAACAATAAA
Found at i:22004874 original size:22 final size:23
Alignment explanation
Indices: 22004849--22004893 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
22004839 TTGGTGTACG
22004849 AATT-TTTTTTTA-TTTTCTAAAA
1 AATTATTTTTTTACTTTT-TAAAA
22004871 AATTATTTTTTTACTTTTTAAAA
1 AATTATTTTTTTACTTTTTAAAA
22004894 TTAAAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 4 0.19
23 13 0.62
24 4 0.19
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (23 bp):
AATTATTTTTTTACTTTTTAAAA
Found at i:22013404 original size:61 final size:61
Alignment explanation
Indices: 22013286--22013405 Score: 145
Period size: 61 Copynumber: 2.0 Consensus size: 61
22013276 CGTGACATCC
* * * * * **
22013286 GACCTTCAGTGTTGTGAGATTGGAGTCAATAGAGTAATCTGTCTTTTGTGTTGTGACATTT
1 GACCTTCAGTGTTGTAACATTGGAGTCAATAGAGCAATATGTCTTTGGTGTCATGACATTT
22013347 GACCTTCAGTGTTGTAACATTGGAGTC-ATAAGAGCAATATG-CTCTTGGTGTCATGACAT
1 GACCTTCAGTGTTGTAACATTGGAGTCAAT-AGAGCAATATGTCT-TTGGTGTCATGACAT
22013406 CAGGAGATCA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
60 4 0.08
61 46 0.92
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.37
Consensus pattern (61 bp):
GACCTTCAGTGTTGTAACATTGGAGTCAATAGAGCAATATGTCTTTGGTGTCATGACATTT
Found at i:22014752 original size:17 final size:16
Alignment explanation
Indices: 22014708--22014749 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
22014698 AATAAACATC
22014708 ATAAATTAA-TT-TAA
1 ATAAATTAATTTCTAA
22014722 ATAAATTAATTTCTAA
1 ATAAATTAATTTCTAA
22014738 ATTAAA-TAATTT
1 A-TAAATTAATTT
22014750 TCTCAACCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 9 0.36
15 2 0.08
16 10 0.40
17 4 0.16
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
ATAAATTAATTTCTAA
Found at i:22015669 original size:59 final size:59
Alignment explanation
Indices: 22015588--22015752 Score: 149
Period size: 59 Copynumber: 2.8 Consensus size: 59
22015578 TTGTTGAAAA
* * * *
22015588 CCACACGGCCGTGTCCAT-TGGACACACGACCGTGTGACTGATGTTGGCAATTAGGGCTT-
1 CCACACGGGCGTGTGCTTATGGACACACGACCGTGTGACTGAT-TTGGAAATTAGGG-TTC
* ** *
22015647 CCACACTGGCGTGTG-TTATGGACACAC-AGTTGTGTAACTGATTTGGGAAATTAGGGTTC
1 CCACACGGGCGTGTGCTTATGGACACACGA-CCGTGTGACTGATTT-GGAAATTAGGGTTC
* ** * *
22015706 CCATACGGGCGTGTGCTTCGGGACACATGGCCGTGTGACTGATTTGG
1 CCACACGGGCGTGTGCTTATGGACACACGACCGTGTGACTGATTTGG
22015753 GGGTCTAGGG
Statistics
Matches: 83, Mismatches: 17, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
58 6 0.07
59 56 0.67
60 21 0.25
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (59 bp):
CCACACGGGCGTGTGCTTATGGACACACGACCGTGTGACTGATTTGGAAATTAGGGTTC
Found at i:22015751 original size:60 final size:59
Alignment explanation
Indices: 22015607--22015753 Score: 154
Period size: 59 Copynumber: 2.5 Consensus size: 59
22015597 CGTGTCCATT
* * * *
22015607 GGACACACGACCGTGTGACTGATGTT-GGCAATTAGGGCTTCCACACTGGCGTGTGTTAT
1 GGACACACGGCCGTGTGACTGAT-TTGGGAAATTAGGGCTTCCACACGGGCGTGTGTTAG
* ** * * *
22015666 GGACACACAGTTGTGTAACTGATTTGGGAAATTAGGG-TTCCCATACGGGCGTGTGCTTCG
1 GGACACACGGCCGTGTGACTGATTTGGGAAATTAGGGCTT-CCACACGGGCGTGTG-TTAG
*
22015726 GGACACATGGCCGTGTGACTGATTTGGG
1 GGACACACGGCCGTGTGACTGATTTGGG
22015754 GGTCTAGGGA
Statistics
Matches: 70, Mismatches: 15, Indels: 5
0.78 0.17 0.06
Matches are distributed among these distances:
58 4 0.06
59 41 0.59
60 25 0.36
ACGTcount: A:0.20, C:0.20, G:0.33, T:0.27
Consensus pattern (59 bp):
GGACACACGGCCGTGTGACTGATTTGGGAAATTAGGGCTTCCACACGGGCGTGTGTTAG
Found at i:22021761 original size:136 final size:136
Alignment explanation
Indices: 22021514--22021776 Score: 454
Period size: 136 Copynumber: 1.9 Consensus size: 136
22021504 GCCATGTGGA
*
22021514 CCCAAAATGAACCTTAAACCACAAGTTTACCATTTCAAGCTTGCTTGGACCCTCAGTAATTCAAA
1 CCCAAAATGAACCTTAAACCACAAGTTTACCATTTCAAACTTGCTTGGACCCTCAGTAATTCAAA
* * *
22021579 GACCAACCAAAATACATCTTCGAAATGACATTAATCGAGCCCAAATCAACCTATTTTGTGCCCAG
66 GACCAACCAAAATACATATTCAAAATGACATTAATCGAGCCCAAATCAACCTATTATGTGCCCAG
22021644 TGTGTC
131 TGTGTC
*
22021650 CCCAAAATGAACCTTAAACCACAAGTTTACCATTTCAAACTTGCTTGGACCCTCAGTAATTTAAA
1 CCCAAAATGAACCTTAAACCACAAGTTTACCATTTCAAACTTGCTTGGACCCTCAGTAATTCAAA
* * *
22021715 GACCAACCAAAATACATATTCAAAATGACATTAATCGAGTCGAAATCAGCCTATTATGTGCC
66 GACCAACCAAAATACATATTCAAAATGACATTAATCGAGCCCAAATCAACCTATTATGTGCC
22021777 TAACGAATGT
Statistics
Matches: 119, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
136 119 1.00
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.26
Consensus pattern (136 bp):
CCCAAAATGAACCTTAAACCACAAGTTTACCATTTCAAACTTGCTTGGACCCTCAGTAATTCAAA
GACCAACCAAAATACATATTCAAAATGACATTAATCGAGCCCAAATCAACCTATTATGTGCCCAG
TGTGTC
Found at i:22023452 original size:25 final size:24
Alignment explanation
Indices: 22023380--22023458 Score: 86
Period size: 25 Copynumber: 3.0 Consensus size: 24
22023370 TTATTTTTCC
*
22023380 TTATTTTATTTTATTTATATATTT
1 TTATTTTATTTTATTTATTTATTT
22023404 ATTATTCTTAATTGTTATATTATTTATTT
1 -TTATT-TT-ATT-TTAT-TTATTTATTT
*
22023433 TTATTTTATTCTTATTTATTTGTTT
1 TTATTTTATT-TTATTTATTTATTT
22023458 T
1 T
22023459 ATTATGCTTC
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
25 15 0.32
26 9 0.19
27 5 0.11
28 9 0.19
29 9 0.19
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (24 bp):
TTATTTTATTTTATTTATTTATTT
Found at i:22025124 original size:6 final size:6
Alignment explanation
Indices: 22025113--22025139 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
22025103 AGTTTATTTG
22025113 TTTTCT TTTTCT TTTTCT TTTTCT TTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTT
22025140 ATGATTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTCT
Found at i:22033129 original size:14 final size:14
Alignment explanation
Indices: 22033106--22033135 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22033096 TTGAAAATAT
22033106 GTTGAATTGGATTG
1 GTTGAATTGGATTG
*
22033120 GTTGATTTGGATTG
1 GTTGAATTGGATTG
22033134 GT
1 GT
22033136 CTCGATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:22036120 original size:49 final size:47
Alignment explanation
Indices: 22036048--22036400 Score: 174
Period size: 46 Copynumber: 7.5 Consensus size: 47
22036038 ATGTTGACTC
22036048 CATGTCCCAGACATGGTCTTACACTGACTTTAATATAGCGAGGCCGATG
1 CATGTCCCAGACA-GGTCTTACACTGACTTTAATATA-CGAGGCCGATG
* * * * * *
22036097 CCATGTCCCAAACAGGTCTTACACTGGCTCTCATCTATCG-GTGTCGATG
1 -CATGTCCCAGACAGGTCTTACACTGACTTTAATATA-CGAG-GCCGATG
* * ** * * *
22036146 TCATGTCCCAGACGGGTCTTACATTGAC---ACA-CCAC-AAGCTGACG
1 -CATGTCCCAGACAGGTCTTACACTGACTTTA-ATATACGAGGCCGATG
*
22036190 CCATGT-CCAGACAGGTCTTACACT-ACTTGT-ATATCGCGAGGCCGATG
1 -CATGTCCCAGACAGGTCTTACACTGACTT-TAATAT-ACGAGGCCGATG
* * ** * * * *
22036237 CATGTCCCAGACATGTCTTACACT-AGCTCTCGTCT-CAATGTCGATG
1 CATGTCCCAGACAGGTCTTACACTGA-CTTTAATATACGAGGCCGATG
* * * * *
22036283 CATGTCCCCGACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATG
1 CATGTCCCAGACAGGTCTTACACTGACTTTAATAT-ACGAGGCCGATG
* * * * * * * *
22036331 CATGCCCCAAACATGTCTTACACTGGCTCT--CATGCTGTGGCCGATG
1 CATGTCCCAGACAGGTCTTACACTGACTTTAATATAC-GAGGCCGATG
*
22036377 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACAGGTCTTACACT
22036401 AGCACACATA
Statistics
Matches: 232, Mismatches: 54, Indels: 38
0.72 0.17 0.12
Matches are distributed among these distances:
42 2 0.01
43 16 0.07
44 10 0.04
45 2 0.01
46 76 0.33
47 26 0.11
48 38 0.16
49 50 0.22
50 12 0.05
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (47 bp):
CATGTCCCAGACAGGTCTTACACTGACTTTAATATACGAGGCCGATG
Found at i:22036283 original size:46 final size:45
Alignment explanation
Indices: 22036230--22036403 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
22036220 ATATCGCGAG
*
22036230 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTC-AT
* * * * *
22036276 GTCGATGCATGTCCCCGACATGTCTTACACTGGCT-TAAATATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT---CATCTC-AT
* * * *
22036324 GCCGATGCATGCCCCAAACATGTCTTACACTGGCTCTCATGCT-GT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCAT-CTCAT
22036369 GGCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGC
22036404 ACACATATCA
Statistics
Matches: 105, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
45 1 0.01
46 65 0.62
47 2 0.02
48 36 0.34
49 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAT
Found at i:22036334 original size:94 final size:94
Alignment explanation
Indices: 22036191--22036400 Score: 266
Period size: 94 Copynumber: 2.3 Consensus size: 94
22036181 AAGCTGACGC
* * ** * *
22036191 CATGT-CCAGACAGGTCTTACACT-ACTTGTATATCGCGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTGGCTTAAATATCGCGAGGCCGATGCATGCCCCAAACATGTC
* *
22036254 TTACACTAGCTCTCGT-CTCAAT-GTCGATG
66 TTACACTAGCTCTCATGCT--ATGGCCGATG
* *
22036283 CATGTCCCCGACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATGCATGCCCCAAACATGTC
1 CATGTCCCAGACATGTCTTACACTGGCTTAAATATCGCGAGGCCGATGCATGCCCCAAACATGTC
* *
22036348 TTACACTGGCTCTCATGCTGTGGCCGATG
66 TTACACTAGCTCTCATGCTATGGCCGATG
22036377 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
22036401 AGCACACATA
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
92 5 0.05
93 17 0.17
94 77 0.76
95 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTGGCTTAAATATCGCGAGGCCGATGCATGCCCCAAACATGTC
TTACACTAGCTCTCATGCTATGGCCGATG
Found at i:22044355 original size:31 final size:31
Alignment explanation
Indices: 22044320--22044400 Score: 153
Period size: 31 Copynumber: 2.6 Consensus size: 31
22044310 AGCCCAAATT
22044320 ACTGGGCCGAAGCCTTTACATTATTCATATC
1 ACTGGGCCGAAGCCTTTACATTATTCATATC
*
22044351 ACTGGGCCGAAGCCTTTTCATTATTCATATC
1 ACTGGGCCGAAGCCTTTACATTATTCATATC
22044382 ACTGGGCCGAAGCCTTTAC
1 ACTGGGCCGAAGCCTTTAC
22044401 TGTAACAATA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTACATTATTCATATC
Found at i:22044632 original size:24 final size:25
Alignment explanation
Indices: 22044605--22044688 Score: 127
Period size: 25 Copynumber: 3.4 Consensus size: 25
22044595 CTGGAGGCCT
*
22044605 AGCCTCTTTTAAT-AATTGGGGC-AA
1 AGCC-CTTTTGATAAATTGGGGCAAA
*
22044629 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAATTGGGGCAAA
22044654 AGCCCTTTTGATAAATTGGGGCAAA
1 AGCCCTTTTGATAAATTGGGGCAAA
22044679 AGCCCTTTTG
1 AGCCCTTTTG
22044689 CACTTCCTCC
Statistics
Matches: 55, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
23 7 0.13
24 12 0.22
25 36 0.65
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30
Consensus pattern (25 bp):
AGCCCTTTTGATAAATTGGGGCAAA
Found at i:22044750 original size:11 final size:11
Alignment explanation
Indices: 22044734--22044778 Score: 53
Period size: 9 Copynumber: 4.5 Consensus size: 11
22044724 TTATGAATAC
22044734 ATCATATGCAT
1 ATCATATGCAT
22044745 ATCATA--CAT
1 ATCATATGCAT
*
22044754 ATCATGTGCAT
1 ATCATATGCAT
22044765 ATC--ATGCAT
1 ATCATATGCAT
22044774 ATCAT
1 ATCAT
22044779 GTATATCAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
9 16 0.57
11 12 0.43
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.36
Consensus pattern (11 bp):
ATCATATGCAT
Found at i:22044756 original size:9 final size:9
Alignment explanation
Indices: 22044739--22044786 Score: 60
Period size: 9 Copynumber: 5.1 Consensus size: 9
22044729 AATACATCAT
22044739 ATGCATATC
1 ATGCATATC
*
22044748 ATACATATC
1 ATGCATATC
22044757 ATGTGCATATC
1 A--TGCATATC
22044768 ATGCATATC
1 ATGCATATC
*
22044777 ATGTATATC
1 ATGCATATC
22044786 A
1 A
22044787 AGATCCCATG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 26 0.76
11 8 0.24
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (9 bp):
ATGCATATC
Found at i:22044779 original size:20 final size:20
Alignment explanation
Indices: 22044734--22044780 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
22044724 TTATGAATAC
*
22044734 ATCATATGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
22044754 ATCATGTGCATATCATGCAT
1 ATCATGTGCATATCATACAT
22044774 ATCATGT
1 ATCATGT
22044781 ATATCAAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:22052449 original size:31 final size:31
Alignment explanation
Indices: 22052406--22052491 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
22052396 TCAATCTCAG
22052406 CATAT-ACTGGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
22052436 CATATCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* *
22052467 AATATCACTGGGCTGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
22052492 TGTAACAATA
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:22052736 original size:24 final size:24
Alignment explanation
Indices: 22052696--22052754 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 24
22052686 CTAGAGGCCT
* *
22052696 AGCCTCTTTTAATAACT-GGGCCAA
1 AGCC-CTTTTGATAACTGGGGCAAA
22052720 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGAT-AACTGGGGCAAA
22052745 AGCCCTTTTG
1 AGCCCTTTTG
22052755 CACTTCCTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
23 7 0.23
24 8 0.26
25 16 0.52
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTGATAACTGGGGCAAA
Found at i:22052823 original size:20 final size:20
Alignment explanation
Indices: 22052800--22052846 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
22052790 TTATGAATAC
22052800 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
22052820 ATCATGTGCATATCATGCAT
1 ATCATGTGCATATCATACAT
22052840 ATCATGT
1 ATCATGT
22052847 ATATACAGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:22052831 original size:11 final size:11
Alignment explanation
Indices: 22052800--22052846 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 11
22052790 TTATGAATAC
22052800 ATCATGTGCAT
1 ATCATGTGCAT
*
22052811 ATCA--TACAT
1 ATCATGTGCAT
22052820 ATCATGTGCAT
1 ATCATGTGCAT
22052831 ATCA--TGCAT
1 ATCATGTGCAT
22052840 ATCATGT
1 ATCATGT
22052847 ATATACAGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
9 17 0.57
11 13 0.43
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:22054745 original size:39 final size:40
Alignment explanation
Indices: 22054651--22054749 Score: 114
Period size: 39 Copynumber: 2.5 Consensus size: 40
22054641 AGATGCATAA
* *
22054651 TAGGGGCACCAAAGTGCAATCAGTAGCACGAATGTGAGAT
1 TAGGGGCACCAAAGTGCAAACAGTAGCACGAATGTGACAT
* *
22054691 TAGGGGCAGCAAAGTGCAAACAG-GGCAC-AAGTGTG-CAT
1 TAGGGGCACCAAAGTGCAAACAGTAGCACGAA-TGTGACAT
*
22054729 TCAGGGGCACCGAAGTGCAAA
1 T-AGGGGCACCAAAGTGCAAA
22054750 TAGAGGCATT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
38 5 0.10
39 25 0.49
40 21 0.41
ACGTcount: A:0.34, C:0.19, G:0.32, T:0.14
Consensus pattern (40 bp):
TAGGGGCACCAAAGTGCAAACAGTAGCACGAATGTGACAT
Found at i:22054781 original size:40 final size:40
Alignment explanation
Indices: 22054733--22054858 Score: 155
Period size: 40 Copynumber: 3.1 Consensus size: 40
22054723 GTGCATTCAG
* * * *
22054733 GGGCACCGAAGTGCAAATAGAGGCATTGATGTGCAAACAT
1 GGGCACCGAAGTACAAATAGGGGCACTGATGTGCAAACAA
* *
22054773 TGGTACCGAAGTAC-AATCAGGGGCACTGATGTGCAAACAA
1 GGGCACCGAAGTACAAAT-AGGGGCACTGATGTGCAAACAA
* * *
22054813 GGGCACCAAAGTACAAATAGGGGCACTAATGTGCAAACAG
1 GGGCACCGAAGTACAAATAGGGGCACTGATGTGCAAACAA
22054853 GGGCAC
1 GGGCAC
22054859 TTCTTCATTT
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.04
40 67 0.92
41 3 0.04
ACGTcount: A:0.36, C:0.20, G:0.29, T:0.15
Consensus pattern (40 bp):
GGGCACCGAAGTACAAATAGGGGCACTGATGTGCAAACAA
Found at i:22054818 original size:20 final size:20
Alignment explanation
Indices: 22054790--22054859 Score: 86
Period size: 20 Copynumber: 3.5 Consensus size: 20
22054780 GAAGTACAAT
*
22054790 CAGGGGCACTGATGTGCAAA
1 CAGGGGCACTAATGTGCAAA
* * * *
22054810 CAAGGGCACCAAAGTACAAA
1 CAGGGGCACTAATGTGCAAA
*
22054830 TAGGGGCACTAATGTGCAAA
1 CAGGGGCACTAATGTGCAAA
22054850 CAGGGGCACT
1 CAGGGGCACT
22054860 TCTTCATTTC
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.36, C:0.21, G:0.30, T:0.13
Consensus pattern (20 bp):
CAGGGGCACTAATGTGCAAA
Found at i:22056964 original size:35 final size:35
Alignment explanation
Indices: 22056914--22057108 Score: 230
Period size: 35 Copynumber: 5.6 Consensus size: 35
22056904 GTACGTTGTC
*
22056914 AATCCAACC-ATAACACGCCGATGCTCATAAGAGCT
1 AATCCAACCGA-AACACGCCAATGCTCATAAGAGCT
* *
22056949 AATCCAACCGAAACACGCCAGTGCTCATTAGAGCT
1 AATCCAACCGAAACACGCCAATGCTCATAAGAGCT
* * *
22056984 AATCCAACTGTAACATGCCAATGCTCATAAGAGCT
1 AATCCAACCGAAACACGCCAATGCTCATAAGAGCT
* * * *
22057019 AATCTAACCGAAACATGCTAGTGCTCATAAGAGCT
1 AATCCAACCGAAACACGCCAATGCTCATAAGAGCT
* * * * * *
22057054 AATCTAATCGTAACATGTCAATACTCATAAGAGCT
1 AATCCAACCGAAACACGCCAATGCTCATAAGAGCT
22057089 AATCCAACCGAAACACGCCA
1 AATCCAACCGAAACACGCCA
22057109 GACAATGAGT
Statistics
Matches: 135, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
35 134 0.99
36 1 0.01
ACGTcount: A:0.38, C:0.28, G:0.14, T:0.20
Consensus pattern (35 bp):
AATCCAACCGAAACACGCCAATGCTCATAAGAGCT
Found at i:22057028 original size:70 final size:70
Alignment explanation
Indices: 22056914--22057109 Score: 277
Period size: 70 Copynumber: 2.8 Consensus size: 70
22056904 GTACGTTGTC
** * * *
22056914 AATCCAACCATAACACGCCGATGCTCATAAGAGCTAATCCAACCGAAACACGCCAGTGCTCATTA
1 AATCCAACTGTAACATGCCAATGCTCATAAGAGCTAATCCAACCGAAACACGCCAGTGCTCATAA
22056979 GAGCT
66 GAGCT
* * *
22056984 AATCCAACTGTAACATGCCAATGCTCATAAGAGCTAATCTAACCGAAACATGCTAGTGCTCATAA
1 AATCCAACTGTAACATGCCAATGCTCATAAGAGCTAATCCAACCGAAACACGCCAGTGCTCATAA
22057049 GAGCT
66 GAGCT
* * *
22057054 AATCTAA-TCGTAACATGTCAATACTCATAAGAGCTAATCCAACCGAAACACGCCAG
1 AATCCAACT-GTAACATGCCAATGCTCATAAGAGCTAATCCAACCGAAACACGCCAG
22057110 ACAATGAGTA
Statistics
Matches: 111, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
69 1 0.01
70 110 0.99
ACGTcount: A:0.38, C:0.28, G:0.15, T:0.20
Consensus pattern (70 bp):
AATCCAACTGTAACATGCCAATGCTCATAAGAGCTAATCCAACCGAAACACGCCAGTGCTCATAA
GAGCT
Found at i:22057218 original size:171 final size:170
Alignment explanation
Indices: 22057008--22057348 Score: 567
Period size: 171 Copynumber: 2.0 Consensus size: 170
22056998 ATGCCAATGC
* * * * * * *
22057008 TCATAAGAGCTAATCTAACCGAAACATGCTAGTGCTCATAAGAGCTAATCTAATCGTAACATG-T
1 TCATAAGAGCTAATCCAACCGAAACATGCCAATGCTCATAAGAGCTAATCCAACCG-AA-AAGAC
22057072 CAATACTCATAAGAGCTAATCCAACCGAAACACGCCAGACAATGAGTATAACATGAGAGTTCGCA
64 CAATACTCATAAGAGCTAATCCAACCGAAACACGCCAGACAATGAGTATAACATGAGAGTTCGCA
22057137 ACAAATGTTAAACCTCGATTTACTCGGGAAATAAGTATATAT
129 ACAAATGTTAAACCTCGATTTACTCGGGAAATAAGTATATAT
*
22057179 TCATAAGAGTTAATCCAACCGAAACATGCCAATGCTCATAAGAGCTAATCCAACCGAAAAGCACC
1 TCATAAGAGCTAATCCAACCGAAACATGCCAATGCTCATAAGAGCTAATCCAACCGAAAAG-ACC
*
22057244 AATGCTCATAAGAGCTAATCCAACCGAAACACGCCAGACAATGAGTATAACATGAGAGTTCGCAA
65 AATACTCATAAGAGCTAATCCAACCGAAACACGCCAGACAATGAGTATAACATGAGAGTTCGCAA
22057309 CAAATGTTAAACCTCGATTTACTCGGGAAATAAGTATATA
130 CAAATGTTAAACCTCGATTTACTCGGGAAATAAGTATATA
22057349 ACTCCCTCCA
Statistics
Matches: 159, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
169 2 0.01
170 2 0.01
171 155 0.97
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.22
Consensus pattern (170 bp):
TCATAAGAGCTAATCCAACCGAAACATGCCAATGCTCATAAGAGCTAATCCAACCGAAAAGACCA
ATACTCATAAGAGCTAATCCAACCGAAACACGCCAGACAATGAGTATAACATGAGAGTTCGCAAC
AAATGTTAAACCTCGATTTACTCGGGAAATAAGTATATAT
Found at i:22057228 original size:35 final size:34
Alignment explanation
Indices: 22057179--22057279 Score: 150
Period size: 35 Copynumber: 2.9 Consensus size: 34
22057169 AAGTATATAT
*
22057179 TCATAAGAGTTAATCCAACCGAAACATGCCAATGC
1 TCATAAGAGCTAATCCAACCGAAACA-GCCAATGC
22057214 TCATAAGAGCTAATCCAACCGAAA-AGCACCAATGC
1 TCATAAGAGCTAATCCAACCGAAACAG--CCAATGC
22057249 TCATAAGAGCTAATCCAACCGAAACACGCCA
1 TCATAAGAGCTAATCCAACCGAAACA-GCCA
22057280 GACAATGAGT
Statistics
Matches: 61, Mismatches: 1, Indels: 8
0.87 0.01 0.11
Matches are distributed among these distances:
33 1 0.02
34 1 0.02
35 57 0.93
36 1 0.02
37 1 0.02
ACGTcount: A:0.42, C:0.29, G:0.14, T:0.16
Consensus pattern (34 bp):
TCATAAGAGCTAATCCAACCGAAACAGCCAATGC
Found at i:22071147 original size:22 final size:21
Alignment explanation
Indices: 22071122--22071176 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 21
22071112 TACAGGGCTC
**
22071122 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCGTGTGACCCAA-GG
* *
22071144 ACACGCCTGTGTGACCCTAGG
1 ACACGCCCGTGTGACCCAAGG
22071165 ACACGCCCGTGT
1 ACACGCCCGTGT
22071177 TGTAGGTCGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 13 0.46
22 15 0.54
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (21 bp):
ACACGCCCGTGTGACCCAAGG
Found at i:22074313 original size:21 final size:22
Alignment explanation
Indices: 22074274--22074314 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
22074264 TCAAATTGGT
*
22074274 CACACGAGCTTGTTGCCCCTCC
1 CACACGAGCGTGTTGCCCCTCC
22074296 CACACGAGCGTG-TGCCCCT
1 CACACGAGCGTGTTGCCCCT
22074315 GTGTCTAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.15, C:0.44, G:0.22, T:0.20
Consensus pattern (22 bp):
CACACGAGCGTGTTGCCCCTCC
Found at i:22076182 original size:28 final size:28
Alignment explanation
Indices: 22076151--22076209 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
22076141 TTTATCATCT
*
22076151 TTAATTATTTCTATTTCCGATTTAGTCC
1 TTAATTATTTCTATTTCCAATTTAGTCC
22076179 TTAATTATTTCTATTTCCAATTTAGTCC
1 TTAATTATTTCTATTTCCAATTTAGTCC
22076207 TTA
1 TTA
22076210 CCCTTTTCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.24, C:0.17, G:0.05, T:0.54
Consensus pattern (28 bp):
TTAATTATTTCTATTTCCAATTTAGTCC
Found at i:22077452 original size:28 final size:26
Alignment explanation
Indices: 22077407--22077506 Score: 105
Period size: 26 Copynumber: 3.7 Consensus size: 26
22077397 CATAGTACCC
* *
22077407 TGCTAAATAAAACACCGACAACTAATGCC
1 TGCTAAAT-ATACACCGACAAC-AA-GCT
*
22077436 TACTAAATATACACCGACAGA-AAGCT
1 TGCTAAATATACACCGACA-ACAAGCT
*
22077462 TGCTAAATATACACCG-GAACAAAGCT
1 TGCTAAATATACACCGACAAC-AAGCT
22077488 TGCTAAATATACACCGACA
1 TGCTAAATATACACCGACA
22077507 TAAAGCCTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
24 1 0.02
25 1 0.02
26 38 0.62
27 3 0.05
28 10 0.16
29 8 0.13
ACGTcount: A:0.44, C:0.25, G:0.12, T:0.19
Consensus pattern (26 bp):
TGCTAAATATACACCGACAACAAGCT
Found at i:22077472 original size:26 final size:26
Alignment explanation
Indices: 22077438--22077512 Score: 116
Period size: 26 Copynumber: 2.9 Consensus size: 26
22077428 CTAATGCCTA
*
22077438 CTAAATATACACCGACAGAAAGCTTG
1 CTAAATATACACCGACACAAAGCTTG
22077464 CTAAATATACACCGGA-ACAAAGCTTG
1 CTAAATATACACC-GACACAAAGCTTG
*
22077490 CTAAATATACACCGACATAAAGC
1 CTAAATATACACCGACACAAAGC
22077513 CTATTACGCC
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.04
26 41 0.91
27 2 0.04
ACGTcount: A:0.44, C:0.24, G:0.13, T:0.19
Consensus pattern (26 bp):
CTAAATATACACCGACACAAAGCTTG
Found at i:22081652 original size:21 final size:22
Alignment explanation
Indices: 22081626--22081671 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
22081616 GGAAAACCAA
* *
22081626 TATAAAGGTT-TTATATTAATT
1 TATAAAGGTTATTATAGTAAAT
22081647 TATAAAGGTTATTATAGTAAAT
1 TATAAAGGTTATTATAGTAAAT
22081669 TAT
1 TAT
22081672 GAAAAATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (22 bp):
TATAAAGGTTATTATAGTAAAT
Found at i:22090618 original size:28 final size:29
Alignment explanation
Indices: 22090570--22090624 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
22090560 ACAGGGGTTT
*
22090570 TCACACGGCCTAGTACACGCCCGTGTCCC
1 TCACACGACCTAGTACACGCCCGTGTCCC
*
22090599 TCACACGACCTCG-ACACGCCCGTGTC
1 TCACACGACCTAGTACACGCCCGTGTC
22090625 TCAGCCCGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.18, C:0.45, G:0.20, T:0.16
Consensus pattern (29 bp):
TCACACGACCTAGTACACGCCCGTGTCCC
Found at i:22091798 original size:46 final size:46
Alignment explanation
Indices: 22091667--22091799 Score: 130
Period size: 46 Copynumber: 2.9 Consensus size: 46
22091657 CTATACGTGC
* * * *
22091667 CGATGCCATGTCCCAAACATGGTCTTACATTA--ACACATCTCGTAGC
1 CGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCATCTCGTAGA
* ** *
22091713 CGATGCATGTCTCGGACATGTCTTACACTGGCT-TACATCTCG-AGGA
1 CGATGCATGTCCCAAACATGTCTTACACTAGCTCT-CATCTCGTA-GA
22091759 CGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATCTC
1 CGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATCTC
22091800 AATGTCAATG
Statistics
Matches: 70, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
44 9 0.13
45 12 0.17
46 48 0.69
47 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATCTCGTAGA
Found at i:22095452 original size:26 final size:27
Alignment explanation
Indices: 22095408--22095469 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 27
22095398 TACCCCCACC
*
22095408 AAAATTTTGACGATTTTTTACCCATGGT
1 AAAATTTTGAC-ATATTTTACCCATGGT
* *
22095436 AAAATTTTGAC-TATTTTGCCCCTGGT
1 AAAATTTTGACATATTTTACCCATGGT
22095462 AAAATTTT
1 AAAATTTT
22095470 AAGAAAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
26 20 0.65
28 11 0.35
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.44
Consensus pattern (27 bp):
AAAATTTTGACATATTTTACCCATGGT
Found at i:22098971 original size:42 final size:42
Alignment explanation
Indices: 22098912--22098992 Score: 153
Period size: 42 Copynumber: 1.9 Consensus size: 42
22098902 GCTATGGGGG
22098912 ACTAAATTGAGAAGATGGACACTTTTATTTAGTTAATTTTGT
1 ACTAAATTGAGAAGATGGACACTTTTATTTAGTTAATTTTGT
*
22098954 ACTAAATTGAGAAGATGGATACTTTTATTTAGTTAATTT
1 ACTAAATTGAGAAGATGGACACTTTTATTTAGTTAATTT
22098993 AGTTAAAATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.35, C:0.06, G:0.16, T:0.43
Consensus pattern (42 bp):
ACTAAATTGAGAAGATGGACACTTTTATTTAGTTAATTTTGT
Found at i:22101154 original size:40 final size:39
Alignment explanation
Indices: 22101057--22101203 Score: 177
Period size: 40 Copynumber: 3.6 Consensus size: 39
22101047 CAAATTCTCA
* * *
22101057 CACACTAAGTGCCAATACATAGCCAAAGCTGTTTTAATCTCG
1 CACACTAAGTGCC-ATACATAGCCGAAGCTATTTGAA--TCG
* *
22101099 CACACTAAGTACCATACATAGCCGAAGCTATTTCGAGTCG
1 CACACTAAGTGCCATACATAGCCGAAGCTATTT-GAATCG
* *
22101139 CACACTGAGTGCCATACATAGCTGAAGCTATCTTGAATCG
1 CACACTAAGTGCCATACATAGCCGAAGCTAT-TTGAATCG
*
22101179 CACACTAAGCGCCATACATAGCCGA
1 CACACTAAGTGCCATACATAGCCGA
22101204 GTTGTTGTCA
Statistics
Matches: 91, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
40 58 0.64
41 20 0.22
42 13 0.14
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (39 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATTTGAATCG
Found at i:22103121 original size:38 final size:38
Alignment explanation
Indices: 22103032--22103226 Score: 212
Period size: 38 Copynumber: 5.0 Consensus size: 38
22103022 AAACCCAAAC
* * * *
22103032 ATAACACCAGCACGAAGCCTACGGGACTTTGAACTCAGAT
1 ATAATACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGAT
* * *
22103072 ATAATATCAGCACTAGGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* *
22103110 ATAATACCAGCACCAAGCCTACGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
22103148 ATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* * * *
22103186 ACAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGAT
1 ATAATACCAGCACGA-AGCCTGCGGG-ATTTAA-CCCGGAT
22103226 A
1 A
22103227 CACATCAAAT
Statistics
Matches: 133, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
37 1 0.01
38 95 0.71
39 8 0.06
40 29 0.22
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.21
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:22107396 original size:28 final size:28
Alignment explanation
Indices: 22107365--22107440 Score: 73
Period size: 29 Copynumber: 2.7 Consensus size: 28
22107355 ATCGATCTCA
22107365 CACACATAGTGCTCGGTTGA-AGAACTCG
1 CACACATAGTGCTCGGTT-ACAGAACTCG
* ** * **
22107393 CACACACAGTGCCTCAATTACCGATTTCG
1 CACACATAGTG-CTCGGTTACAGAACTCG
22107422 CACACATAGTGCTCGGTTA
1 CACACATAGTGCTCGGTTA
22107441 AAGGAATTTA
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
28 17 0.46
29 20 0.54
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.24
Consensus pattern (28 bp):
CACACATAGTGCTCGGTTACAGAACTCG
Found at i:22107482 original size:54 final size:56
Alignment explanation
Indices: 22107365--22107487 Score: 155
Period size: 57 Copynumber: 2.2 Consensus size: 56
22107355 ATCGATCTCA
* *
22107365 CACACATAGTGCTCGGTTGAAGAACTCGCACACACAGTGCCTCAATTACCGATTTCG
1 CACACATAGTGCTCGGTTAAAGAACTCACACACACAGTGCCTCAATTA-CGATTTCG
* *
22107422 CACACATAGTGCTCGGTTAAAGGAATTTACACACACAGTGCCTCTAA-T-C-A-TTCG
1 CACACATAGTGCTCGGTTAAA-GAACTCACACACACAGTGCCTC-AATTACGATTTCG
22107476 CACACATAGTGC
1 CACACATAGTGC
22107488 CCATATTCAT
Statistics
Matches: 60, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
54 16 0.27
55 1 0.02
56 1 0.02
57 20 0.33
58 20 0.33
59 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (56 bp):
CACACATAGTGCTCGGTTAAAGAACTCACACACACAGTGCCTCAATTACGATTTCG
Found at i:22107680 original size:43 final size:43
Alignment explanation
Indices: 22107619--22107969 Score: 517
Period size: 43 Copynumber: 8.2 Consensus size: 43
22107609 CCTTGCTCGA
** *
22107619 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
22107662 ATCACTGGCACGGAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * * * *
22107705 ATCATCGACACGAAGCCTGCTAGGCATGAAGGCTCTAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
22107748 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACTC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
22107791 ATCACCGGCACGAAGCCTGCTAGGCA-GAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACG-AAGGCCCGAATACAC
* * *
22107834 ATCACCGGCATGAAGCCTGCTAGGCACAAAGGCCCGAATACTC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
22107877 ATCACCGGCACGAAGCCTGCTAGGCA-GAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACG-AAGGCCCGAATACAC
* *
22107920 ATCACCGGCATGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
22107963 ATCACCG
1 ATCACCG
22107970 AGTTTCATGC
Statistics
Matches: 275, Mismatches: 29, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
43 275 1.00
ACGTcount: A:0.31, C:0.32, G:0.24, T:0.13
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:22109599 original size:28 final size:28
Alignment explanation
Indices: 22109552--22109616 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
22109542 AAATTAACCC
*
22109552 TAGGGGTATAAAGGTCATTTTGCACACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
* *
22109580 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
22109608 TAGGGGTAT
1 TAGGGGTAT
22109617 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCACACA
Found at i:22110040 original size:72 final size:72
Alignment explanation
Indices: 22109915--22110057 Score: 207
Period size: 72 Copynumber: 2.0 Consensus size: 72
22109905 CTATGAAAGG
* * * * *
22109915 GTGTCAGTTACACACCTATTTTTGGGATTTCCTCGATGTGATCTCCACACGAACTGCCTACAATT
1 GTGTCAGATACACACCTATTTTCGAGATTTCCTCGATGAGATCTACACACGAACTGCCTACAATT
22109980 GAATCAA
66 GAATCAA
* *
22109987 GTGTCAGATACACACCTGTTTTCGAGATTTCCTCG-TCGAGATCTACACCCGAACTGCCTACAAT
1 GTGTCAGATACACACCTATTTTCGAGATTTCCTCGAT-GAGATCTACACACGAACTGCCTACAAT
22110051 TGAATCA
65 TGAATCA
22110058 CTTACTATTA
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
71 1 0.02
72 62 0.98
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.30
Consensus pattern (72 bp):
GTGTCAGATACACACCTATTTTCGAGATTTCCTCGATGAGATCTACACACGAACTGCCTACAATT
GAATCAA
Found at i:22110774 original size:12 final size:13
Alignment explanation
Indices: 22110755--22110787 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
22110745 GGGTTCGGCT
22110755 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
22110768 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
22110780 ATGGAGAA
1 ATGGAGAA
22110788 AAAGAGATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:22117331 original size:27 final size:29
Alignment explanation
Indices: 22117274--22117335 Score: 83
Period size: 27 Copynumber: 2.2 Consensus size: 29
22117264 ATGTGATAGT
** *
22117274 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGATACAGATATTACGTGGCAGGGC
22117303 CACCAGA-ACAGATA-TACGTGGCAGGGC
1 CACCAGATACAGATATTACGTGGCAGGGC
22117330 CACCAG
1 CACCAG
22117336 GACGCTTCCT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 16 0.53
28 7 0.23
29 7 0.23
ACGTcount: A:0.31, C:0.26, G:0.26, T:0.18
Consensus pattern (29 bp):
CACCAGATACAGATATTACGTGGCAGGGC
Found at i:22117488 original size:28 final size:28
Alignment explanation
Indices: 22117445--22117505 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
22117435 TAACCCTAGG
*
22117445 GGTATAAAGGTCATTTTGCACACATAGA
1 GGTATAAAGGTAATTTTGCACACATAGA
* * *
22117473 GGTATAATGGTAATTTTGCATACATAGG
1 GGTATAAAGGTAATTTTGCACACATAGA
22117501 GGTAT
1 GGTAT
22117506 TCTAGTAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.33
Consensus pattern (28 bp):
GGTATAAAGGTAATTTTGCACACATAGA
Found at i:22120106 original size:38 final size:38
Alignment explanation
Indices: 22120026--22120191 Score: 163
Period size: 38 Copynumber: 4.3 Consensus size: 38
22120016 AAACCCAAAC
* * * * * *
22120026 ATAACACCAGCACGAAGCCTACGAGACTTTAAACTCAGAT
1 ATAATACCAGCACCAAGCCTGCGGGA-TTT-AACCCGGAT
* * *
22120066 ATAATATCAGCACTAGGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACCAAGCCTGCGGGATTTAACCCGGAT
*
22120104 ATAATACCAGCACCAAGCCTACGGGATTTAACCCGGAT
1 ATAATACCAGCACCAAGCCTGCGGGATTTAACCCGGAT
* * * *
22120142 ATATTACCAGCACGAAGCCTAG-GAGATTTAACCCAGAT
1 ATAATACCAGCACCAAGCCT-GCGGGATTTAACCCGGAT
*
22120180 ATAATTCCAGCA
1 ATAATACCAGCA
22120192 TATAGCTTGC
Statistics
Matches: 106, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
38 83 0.78
39 3 0.03
40 20 0.19
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (38 bp):
ATAATACCAGCACCAAGCCTGCGGGATTTAACCCGGAT
Found at i:22120175 original size:76 final size:78
Alignment explanation
Indices: 22120017--22120191 Score: 194
Period size: 76 Copynumber: 2.3 Consensus size: 78
22120007 CGAGGTATAA
* * * * * * * *
22120017 AACCCAAACATAACACCAGCACGAAGCCTACGAGACTTTAAACTCAGATATAATATCAGCACTAG
1 AACCCAGATATAATACCAGCACCAAGCCTACGAGACTTTAAACCCAGATATAATACCAGCACGAA
*
22120082 GCCTGCGGGATTT
66 GCCTGCGAGATTT
* * * *
22120095 AACCCGGATATAATACCAGCACCAAGCCTACGGGA-TTT-AACCCGGATATATTACCAGCACGAA
1 AACCCAGATATAATACCAGCACCAAGCCTACGAGACTTTAAACCCAGATATAATACCAGCACGAA
22120158 GCCTAG-GAGATTT
66 GCCT-GCGAGATTT
*
22120171 AACCCAGATATAATTCCAGCA
1 AACCCAGATATAATACCAGCA
22120192 TATAGCTTGC
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
76 48 0.59
77 4 0.05
78 29 0.36
ACGTcount: A:0.37, C:0.27, G:0.17, T:0.19
Consensus pattern (78 bp):
AACCCAGATATAATACCAGCACCAAGCCTACGAGACTTTAAACCCAGATATAATACCAGCACGAA
GCCTGCGAGATTT
Found at i:22141510 original size:19 final size:18
Alignment explanation
Indices: 22141465--22141516 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 18
22141455 CCGTTTTCAT
*
22141465 TTACTTAATTAGATATTTT
1 TTACTTAATTA-ATATTTA
* *
22141484 TTAGTTAATTAATGTTTAA
1 TTACTTAATTAATATTT-A
22141503 TTACTTAAGTTAAT
1 TTACTTAA-TTAAT
22141517 TGACATAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 5 0.19
19 17 0.63
20 5 0.19
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.54
Consensus pattern (18 bp):
TTACTTAATTAATATTTA
Found at i:22147147 original size:30 final size:30
Alignment explanation
Indices: 22147111--22147171 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
22147101 AAGAAAGAAT
*
22147111 TTTTAGAGCTCAAACAGGGAAACATGACTG
1 TTTTAGAGCTCAAACAGGGAAACATAACTG
22147141 TTTTAGAGCTCAAACAGGGAAACATAACTG
1 TTTTAGAGCTCAAACAGGGAAACATAACTG
22147171 T
1 T
22147172 ATCTGAATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (30 bp):
TTTTAGAGCTCAAACAGGGAAACATAACTG
Found at i:22157769 original size:37 final size:37
Alignment explanation
Indices: 22157719--22157797 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
22157709 TTATTACGAA
* *
22157719 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
22157756 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
22157793 GTCTT
1 GTCTT
22157798 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:22157994 original size:47 final size:47
Alignment explanation
Indices: 22157920--22158283 Score: 350
Period size: 47 Copynumber: 7.5 Consensus size: 47
22157910 TCGGGACTTA
* * * * * *
22157920 TCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTG
* *
22157967 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTG
* ** * * * *
22158014 TCACAGGTATATATACACTTTCACATCCAGGACGTTGGCCACTCGGCCCTG
1 TCAC----ATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTG
*
22158065 TCACATATATACACTCTCACATTCATCACGTCGGCCATTAGGCCTTAGG
1 TCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTT--G
* * * ** * * * *
22158114 ACATATATATATACACTTTCACATCCAGGACGTTGGCCACTCGGCCCTG
1 TC--ACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTG
*
22158163 TCACATATATACACTCTCACATTCATCACGTCGGCCATTAGGCCTTAGG
1 TCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTT--G
* * * *
22158212 ACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TC--ACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTG
22158261 TCACATATATACACTTTCACATT
1 TCACATATATACACTTTCACATT
22158284 TATTCAAATA
Statistics
Matches: 253, Mismatches: 52, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
47 132 0.52
49 7 0.03
51 114 0.45
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTG
Found at i:22158099 original size:98 final size:98
Alignment explanation
Indices: 22157927--22158283 Score: 552
Period size: 98 Copynumber: 3.6 Consensus size: 98
22157917 TTATCACATT
* *
22157927 TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTTCACATTCA
1 TATACACTTTCACATCCAGCACGTTGGCCACTCGGCCCTGTCACATATATACACTCTCACATTCA
* ** **
22157992 TCACATCGGCCATTAGGCCTTATCACAGGTATA
66 TCACGTCGGCCATTAGGCCTTAGGACATATATA
*
22158025 TATACACTTTCACATCCAGGACGTTGGCCACTCGGCCCTGTCACATATATACACTCTCACATTCA
1 TATACACTTTCACATCCAGCACGTTGGCCACTCGGCCCTGTCACATATATACACTCTCACATTCA
22158090 TCACGTCGGCCATTAGGCCTTAGGACATATATA
66 TCACGTCGGCCATTAGGCCTTAGGACATATATA
*
22158123 TATACACTTTCACATCCAGGACGTTGGCCACTCGGCCCTGTCACATATATACACTCTCACATTCA
1 TATACACTTTCACATCCAGCACGTTGGCCACTCGGCCCTGTCACATATATACACTCTCACATTCA
22158188 TCACGTCGGCCATTAGGCCTTAGGACATATATA
66 TCACGTCGGCCATTAGGCCTTAGGACATATATA
* * * * * * * * *
22158221 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
1 TATACACTTTCACATCCAGCACGTTGGCCACTCGGCCCTGTCACATATATACACTCTCACATT
22158284 TATTCAAATA
Statistics
Matches: 241, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 241 1.00
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (98 bp):
TATACACTTTCACATCCAGCACGTTGGCCACTCGGCCCTGTCACATATATACACTCTCACATTCA
TCACGTCGGCCATTAGGCCTTAGGACATATATA
Found at i:22159634 original size:32 final size:32
Alignment explanation
Indices: 22159593--22159658 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
22159583 ATTGTACTTA
22159593 ATTAAACACTAATAATTAAAAATTATCAAACT
1 ATTAAACACTAATAATTAAAAATTATCAAACT
22159625 ATTAAACACTAATAATTAAAAATTATCAAACT
1 ATTAAACACTAATAATTAAAAATTATCAAACT
22159657 AT
1 AT
22159659 CATTCTACTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (32 bp):
ATTAAACACTAATAATTAAAAATTATCAAACT
Found at i:22163007 original size:25 final size:25
Alignment explanation
Indices: 22162978--22163027 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
22162968 AAATAAAAAA
* *
22162978 ATTT-AAAATATAATAAATCAAATAC
1 ATTTAAAAACATAA-AAAACAAATAC
22163003 ATTTAAAAACATAAAAAACAAATAC
1 ATTTAAAAACATAAAAAACAAATAC
22163028 TAAAACAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.64, C:0.10, G:0.00, T:0.26
Consensus pattern (25 bp):
ATTTAAAAACATAAAAAACAAATAC
Found at i:22170562 original size:21 final size:21
Alignment explanation
Indices: 22170538--22170577 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
22170528 TAGTCCTTTG
22170538 TGATGAGAATTTGATCAACTA
1 TGATGAGAATTTGATCAACTA
22170559 TGATGAGAATTTGATCAAC
1 TGATGAGAATTTGATCAAC
22170578 CTAGCATTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.33
Consensus pattern (21 bp):
TGATGAGAATTTGATCAACTA
Found at i:22171420 original size:12 final size:12
Alignment explanation
Indices: 22171388--22171426 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
22171378 TAAAATTAAA
22171388 AAATTAA-AAC-
1 AAATTAAGAACT
22171398 AAATT-AGAACT
1 AAATTAAGAACT
22171409 AAATTAAGAACT
1 AAATTAAGAACT
22171421 AAATTA
1 AAATTA
22171427 TATTAATAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 1 0.04
10 8 0.31
11 5 0.19
12 12 0.46
ACGTcount: A:0.62, C:0.08, G:0.05, T:0.26
Consensus pattern (12 bp):
AAATTAAGAACT
Found at i:22173534 original size:16 final size:16
Alignment explanation
Indices: 22173515--22173545 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22173505 CTTCTTCACT
22173515 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
22173531 TACTTACTTACTTAA
1 TACTCACTTACTTAA
22173546 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:22173551 original size:20 final size:20
Alignment explanation
Indices: 22173512--22173551 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
22173502 AAACTTCTTC
* *
22173512 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
22173532 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
22173552 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:22173866 original size:53 final size:55
Alignment explanation
Indices: 22173784--22173928 Score: 206
Period size: 53 Copynumber: 2.7 Consensus size: 55
22173774 ATCCTTTTGA
* *
22173784 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCC-TTGCCTTAT-G-
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGA-CCTTTGCCTTATAGT
* * *
22173837 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGACCTTTGCCTTATAGT
*
22173892 AACTTATCAATGCCATGTCTTGACATGGTCTTACATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATG
22173929 ATTTCCTTGC
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
52 2 0.03
53 44 0.55
54 1 0.01
55 33 0.41
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.34
Consensus pattern (55 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:22176618 original size:38 final size:38
Alignment explanation
Indices: 22176576--22176649 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
22176566 AACATGAAAG
*
22176576 ACAAAAACACAAAAGATATAATAGTGAAATGTGAAAAT
1 ACAAAAACACAAAAGATATAACAGTGAAATGTGAAAAT
*
22176614 ACAAAAACACAAAAGATATAACAGTGATATGTGAAA
1 ACAAAAACACAAAAGATATAACAGTGAAATGTGAAA
22176650 TTAACTTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.59, C:0.09, G:0.14, T:0.18
Consensus pattern (38 bp):
ACAAAAACACAAAAGATATAACAGTGAAATGTGAAAAT
Found at i:22189301 original size:47 final size:47
Alignment explanation
Indices: 22189247--22189534 Score: 432
Period size: 47 Copynumber: 6.1 Consensus size: 47
22189237 TTGGGATTTT
** *
22189247 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
22189294 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
22189341 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
22189388 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
22189435 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATAGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
22189482 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
22189529 ATGTGA
1 ATGTGA
22189535 AATATATATA
Statistics
Matches: 216, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 216 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:22189349 original size:25 final size:25
Alignment explanation
Indices: 22189274--22189349 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
22189264 GTGTATATAT
22189274 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
22189299 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
22189321 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
22189346 GTGA
1 GTGA
22189350 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:22189469 original size:141 final size:141
Alignment explanation
Indices: 22189246--22189534 Score: 506
Period size: 141 Copynumber: 2.0 Consensus size: 141
22189236 TTTGGGATTT
** *
22189246 TATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
* *
22189311 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
66 ATGCATATGTGTGATAAGGCCGAATAGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
22189376 GCCGAATGGCC
131 GCCGAATGGCC
22189387 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
*
22189452 ATGCATATGTGTGATAAGGCCGAATAGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAA
66 ATGCATATGTGTGATAAGGCCGAATAGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
*
22189517 GCCGAATGGTC
131 GCCGAATGGCC
*
22189528 AATGTGA
1 TATGTGA
22189535 AATATATATA
Statistics
Matches: 140, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
141 140 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (141 bp):
TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
ATGCATATGTGTGATAAGGCCGAATAGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA
GCCGAATGGCC
Found at i:22189585 original size:94 final size:93
Alignment explanation
Indices: 22189269--22189576 Score: 377
Period size: 94 Copynumber: 3.2 Consensus size: 93
22189259 TGAATGTGTA
* * *
22189269 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAGGCCGA
*
22189334 ATGGCCAATGTGGTGAATATGA-ACATG
66 ATGGCCAATGTGATGAATATGAGACATG
* *
22189361 CATATATGTGATAAGGCCGAATGGCCTATGTGATGAATGTGAACATGCATATATGTGATAAGGCC
1 --TATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAGGCC
*
22189426 GAATGGCCAATGTGATGAATGTGAG-CATG
64 GAATGGCCAATGTGATGAATATGAGACATG
* * * * *
22189455 CATATGTGTGATAAGGCCGAATAGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCC
1 --TATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAGGCC
* * *
22189520 GAATGGTCAATGTGAAATATATATATGAGATATG
64 GAATGGCCAATGTG--AT-GA-ATATGAGACATG
* *
22189554 TATATGTGGTAAAGCCGAATGGC
1 TATATGTGATAAGGCCGAATGGC
22189577 TAGTGTGAAA
Statistics
Matches: 188, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
94 157 0.84
96 2 0.01
97 20 0.11
98 6 0.03
99 3 0.02
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (93 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAGGCCGA
ATGGCCAATGTGATGAATATGAGACATG
Found at i:22189921 original size:37 final size:37
Alignment explanation
Indices: 22189739--22189920 Score: 301
Period size: 37 Copynumber: 4.9 Consensus size: 37
22189729 GGAAATATAT
*
22189739 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
22189776 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
22189813 CCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
22189850 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
22189887 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
22189921 TCGTCTGAGC
Statistics
Matches: 137, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 137 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:22191553 original size:40 final size:40
Alignment explanation
Indices: 22191516--22191618 Score: 156
Period size: 40 Copynumber: 2.6 Consensus size: 40
22191506 GCTACTCGTT
*
22191516 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
22191556 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTC-GCA
22191597 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
22191619 AGACATCATT
Statistics
Matches: 58, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
40 49 0.84
41 9 0.16
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:22191783 original size:117 final size:117
Alignment explanation
Indices: 22191593--22191803 Score: 422
Period size: 117 Copynumber: 1.8 Consensus size: 117
22191583 TTAGTAACTC
22191593 AGCACAAAGCCTTCGGGACTTAGCCCAGACATCATTCAAATAACCATGCACATTTAACAATAAAT
1 AGCACAAAGCCTTCGGGACTTAGCCCAGACATCATTCAAATAACCATGCACATTTAACAATAAAT
22191658 CATGGCACATTCGTATTTCATTTTCGTTATCTTAGTCCGGATATGGTCACTT
66 CATGGCACATTCGTATTTCATTTTCGTTATCTTAGTCCGGATATGGTCACTT
22191710 AGCACAAAGCCTTCGGGACTTAGCCCAGACATCATTCAAATAACCATGCACATTTAACAATAAAT
1 AGCACAAAGCCTTCGGGACTTAGCCCAGACATCATTCAAATAACCATGCACATTTAACAATAAAT
22191775 CATGGCACATTCGTATTTCATTTTCGTTA
66 CATGGCACATTCGTATTTCATTTTCGTTA
22191804 GCAAAACTCG
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
117 94 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (117 bp):
AGCACAAAGCCTTCGGGACTTAGCCCAGACATCATTCAAATAACCATGCACATTTAACAATAAAT
CATGGCACATTCGTATTTCATTTTCGTTATCTTAGTCCGGATATGGTCACTT
Found at i:22198609 original size:28 final size:28
Alignment explanation
Indices: 22198568--22198630 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
22198558 TTGGACACCG
22198568 CCTTCACATCAATCATCAGAACTAATAAT
1 CCTT-ACATCAATCATCAGAACTAATAAT
22198597 CCTTACATCAATCATCAGAACTAATAAT
1 CCTTACATCAATCATCAGAACTAATAAT
22198625 CCTTAC
1 CCTTAC
22198631 TCTGAACTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 30 0.88
29 4 0.12
ACGTcount: A:0.40, C:0.29, G:0.03, T:0.29
Consensus pattern (28 bp):
CCTTACATCAATCATCAGAACTAATAAT
Found at i:22198976 original size:20 final size:20
Alignment explanation
Indices: 22198951--22198995 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
22198941 TTGCTTAAAG
22198951 TTTTATTCATA-AGATTATTA
1 TTTTATTCATAGA-ATTATTA
*
22198971 TTTTATTTATAGAATTATTA
1 TTTTATTCATAGAATTATTA
22198991 TTTTA
1 TTTTA
22198996 ATAAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 22 0.96
21 1 0.04
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (20 bp):
TTTTATTCATAGAATTATTA
Found at i:22199006 original size:20 final size:19
Alignment explanation
Indices: 22198959--22199006 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
22198949 AGTTTTATTC
**
22198959 ATAAGATTATTATTTTATTT
1 ATAA-ATTATTATTTTATAA
22198979 ATAGAATTATTATTTTAATAA
1 ATA-AATTATTATTTT-ATAA
22199000 ATAAATT
1 ATAAATT
22199007 TCATATTAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (19 bp):
ATAAATTATTATTTTATAA
Found at i:22199866 original size:19 final size:20
Alignment explanation
Indices: 22199818--22199867 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
22199808 TTAATTCAAG
22199818 TTTAT-TTTAAATTATTTATA
1 TTTATATTT-AATTATTTATA
*
22199838 TTTATA-TTAATTTTTTAT-
1 TTTATATTTAATTATTTATA
22199856 TTTATATTTAAT
1 TTTATATTTAAT
22199868 AATATTTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 6 0.22
19 14 0.52
20 7 0.26
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTATATTTAATTATTTATA
Found at i:22199875 original size:22 final size:25
Alignment explanation
Indices: 22199832--22199880 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
22199822 TTTTAAATTA
*
22199832 TTTATATTTATATTAAT-TTTTTAT
1 TTTATATTTATATTAATATTTTCAT
22199856 TTTATATTTA-A-TAATATTTTCAT
1 TTTATATTTATATTAATATTTTCAT
22199879 TT
1 TT
22199881 ATTAAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 4 0.17
23 9 0.39
24 10 0.43
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (25 bp):
TTTATATTTATATTAATATTTTCAT
Found at i:22201060 original size:10 final size:11
Alignment explanation
Indices: 22201017--22201057 Score: 55
Period size: 11 Copynumber: 3.5 Consensus size: 11
22201007 GTTTTAAAAC
22201017 TAAAAATTAAA
1 TAAAAATTAAA
22201028 TAAAATTATTATAA
1 TAAAA--ATTA-AA
22201042 TAAAAATTAAA
1 TAAAAATTAAA
22201053 TAAAA
1 TAAAA
22201058 TTATCTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 12 0.44
12 4 0.15
13 4 0.15
14 7 0.26
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTAAA
Found at i:22203409 original size:34 final size:34
Alignment explanation
Indices: 22203366--22203434 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
22203356 GAGGAAGAGC
22203366 AACAAGGAAGTCTCGGAGGCTGATGTGATGGTTG
1 AACAAGGAAGTCTCGGAGGCTGATGTGATGGTTG
22203400 AACAAGGAAGTCTCGGAGGCTGATGTGATGGTTG
1 AACAAGGAAGTCTCGGAGGCTGATGTGATGGTTG
22203434 A
1 A
22203435 CGATGGCAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.28, C:0.12, G:0.38, T:0.23
Consensus pattern (34 bp):
AACAAGGAAGTCTCGGAGGCTGATGTGATGGTTG
Found at i:22203815 original size:18 final size:19
Alignment explanation
Indices: 22203789--22203829 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
22203779 AATCACTTGC
22203789 AACACGC-A-AGCAAAGAGA
1 AACACGCAACAGCAAAGA-A
*
22203807 AACATGCAACAGCAAAGAA
1 AACACGCAACAGCAAAGAA
22203826 AACA
1 AACA
22203830 AATAACAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 6 0.30
19 6 0.30
20 8 0.40
ACGTcount: A:0.59, C:0.22, G:0.17, T:0.02
Consensus pattern (19 bp):
AACACGCAACAGCAAAGAA
Found at i:22205179 original size:29 final size:29
Alignment explanation
Indices: 22205110--22205180 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 29
22205100 AGAGCCAAAT
*
22205110 TATACAT-AAATAAACTTAAAAGAGAATA
1 TATACATAAAATAAACTTAAAAGAGAACA
* *
22205138 TATACATATAATAAATTTAAAAGAGAACA
1 TATACATAAAATAAACTTAAAAGAGAACA
*
22205167 TTTACATAAAATAA
1 TATACATAAAATAA
22205181 TATGAAACAA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 7 0.19
29 30 0.81
ACGTcount: A:0.59, C:0.07, G:0.06, T:0.28
Consensus pattern (29 bp):
TATACATAAAATAAACTTAAAAGAGAACA
Found at i:22207060 original size:177 final size:176
Alignment explanation
Indices: 22206570--22207441 Score: 1191
Period size: 177 Copynumber: 4.9 Consensus size: 176
22206560 AGTCTTATAG
* * * * * * * * *
22206570 CAACTTTAGGAAGATAAGATTTGTGA-CTTCAACCTGCTC-CACTACAACTTTAGGGAGACAAAG
1 CAACTTCAGGAAGATAAGACTTGT-ATATTCAACCTGCTCTC-TTGCAACTTCAGAGAGATAAGG
* * * *
22206633 -TCGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCACCATCTTCGATCTACT
64 CT-GGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCT-GT
*
22206697 CCATAGCCGATACATAGAGATAAGATCTGTAATTTTCAGTCTACTTCCTA
127 CCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTACTTCCTA
*
22206747 CAACTTCAGGAAGATAAGACTTGTATATTCAACCTGCTCTC-TGTAACTTCAGAGAGATAAGGCT
1 CAACTTCAGGAAGATAAGACTTGTATATTCAACCTGCTCTCTTGCAACTTCAGAGAGATAAGGCT
* * * *
22206811 GATGGCTAAAATCTACTTCATAGCCGATACATGGAGATAATACTCGCCATTTTTGATCTAGTCCA
66 GGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCT-GTCCA
*
22206876 TAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTA
130 TAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTACTTCCTA
* * * * * * *
22206923 CAATTTCAAGAAGATAAGACTTGCATATTGAGCCTGCTCTAC-TGCAACTTTAGAGGGATAAGGC
1 CAACTTCAGGAAGATAAGACTTGTATATTCAACCTGCTCT-CTTGCAACTTCAGAGAGATAAGGC
22206987 TGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGTTCC
65 TGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTG-TCC
* * *
22207052 ATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCTTG
129 ATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTACTTCCTA
* *
22207100 CAACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGTTAAC-TCAGAGAGATAAGGC
1 CAACTTCAGGAAGATAAGACTTGTATATTCAACCTGCTCTCTTG-CAACTTCAGAGAGATAAGGC
* * * *
22207164 TGATGGTTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCCTC
65 TGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGTC-C
* * *
22207229 ATAACCGATACATGGAGATAAGATCTGTAACTTTT-AGTCTACTTCTTG
129 ATAGCCGATACATGGAGATAAGATCTGTAA-TTTTCAGTCTACTTCCTA
* * * *
22207277 CAACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCT
1 CAACTTCAGGAAGATAAGACTTGTATATTCAACCTGCTCTCTTGCAACTTCAGAGAGATAAGGCT
* *
22207342 GGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTTGCCATTTTTGATCTGCCCCA
66 GGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTG-TCCA
22207407 TAGCCGATACATGGAGATAAGATCTGTAATTTTCA
130 TAGCCGATACATGGAGATAAGATCTGTAATTTTCA
22207442 CCGATGTCGC
Statistics
Matches: 627, Mismatches: 56, Indels: 24
0.89 0.08 0.03
Matches are distributed among these distances:
176 162 0.26
177 455 0.73
178 10 0.02
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (176 bp):
CAACTTCAGGAAGATAAGACTTGTATATTCAACCTGCTCTCTTGCAACTTCAGAGAGATAAGGCT
GGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGTCCAT
AGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTACTTCCTA
Found at i:22228485 original size:29 final size:29
Alignment explanation
Indices: 22228416--22228486 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
22228406 AGAGCCAAAT
* *
22228416 TATACAT-AAATAAACTTAAAAGAGAATA
1 TATACATAAAATAAACTTAAAAGACAACA
* *
22228444 TATACATATAATAAATTTAAAAGACAACA
1 TATACATAAAATAAACTTAAAAGACAACA
*
22228473 TTTACATAAAATAA
1 TATACATAAAATAA
22228487 TATGAAAACA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 7 0.19
29 29 0.81
ACGTcount: A:0.59, C:0.08, G:0.04, T:0.28
Consensus pattern (29 bp):
TATACATAAAATAAACTTAAAAGACAACA
Found at i:22230431 original size:23 final size:24
Alignment explanation
Indices: 22230405--22230466 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 24
22230395 ATTTTTTTTT
* *
22230405 TATTTTAAATTGTTTTA-TTAAAC
1 TATTTTAAATTGATTTAGATAAAC
* *
22230428 TATTTTAAATTGATTTAGATATAT
1 TATTTTAAATTGATTTAGATAAAC
22230452 TATTTTAAATT-ATTT
1 TATTTTAAATTGATTT
22230467 CATATACTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 20 0.59
24 14 0.41
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (24 bp):
TATTTTAAATTGATTTAGATAAAC
Found at i:22230510 original size:26 final size:26
Alignment explanation
Indices: 22230403--22230744 Score: 126
Period size: 26 Copynumber: 13.5 Consensus size: 26
22230393 TGATTTTTTT
*
22230403 TTTATTTTAAATTG-TTT-TAT-TAA
1 TTTATTTTAAATTGATTTATATATTA
** *
22230426 ACTATTTTAAATTGATTTAGATA-TA
1 TTTATTTTAAATTGATTTATATATTA
*
22230451 -TTATTTTAAATT-ATTTCATATACTA
1 TTTATTTTAAATTGATTT-ATATATTA
* * * *
22230476 TATACTTTAAATTGCTTTATACATTA
1 TTTATTTTAAATTGATTTATATATTA
* *
22230502 TTTATTTTAAACTTGTTTTATGTATTA
1 TTTATTTTAAA-TTGATTTATATATTA
*
22230529 TTCATTTTAAATTG--TT-TA-ATTA
1 TTTATTTTAAATTGATTTATATATTA
* *
22230551 TTTACTTTAAAATT--TTTCAAATATTA
1 TTTA-TTTTAAATTGATTT-ATATATTA
** *
22230577 TCAATTTCAAATT--TTTATATGTATTA
1 TTTATTTTAAATTGATTTATA--TATTA
* ** ** *
22230603 TCTATTTTTTA-T-ATACCATTTATT-
1 TTTATTTTAAATTGAT-TTATATATTA
* * *
22230627 TTTATTTTTAGA-TGTTTTGTATATTA
1 TTTA-TTTTAAATTGATTTATATATTA
* * ** * *
22230653 CTTATATTAAATTTCTTTTTACATAATA
1 TTTATTTTAAA-TT-GATTTATATATTA
* * *
22230681 TTTATTTTAAACTCAATTATATATTA
1 TTTATTTTAAATTGATTTATATATTA
* * *
22230707 TTTATCTTAAATTGTTTTACATATTA
1 TTTATTTTAAATTGATTTATATATTA
22230733 TTTATTTTAAAT
1 TTTATTTTAAAT
22230745 CTTTTTTCCT
Statistics
Matches: 234, Mismatches: 62, Indels: 43
0.69 0.18 0.13
Matches are distributed among these distances:
22 7 0.03
23 27 0.12
24 25 0.11
25 38 0.16
26 90 0.38
27 29 0.12
28 18 0.08
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (26 bp):
TTTATTTTAAATTGATTTATATATTA
Found at i:22232131 original size:18 final size:18
Alignment explanation
Indices: 22232091--22232134 Score: 72
Period size: 17 Copynumber: 2.4 Consensus size: 18
22232081 TTTTAATAAT
22232091 TTTTTAAAAAAATTATAGA
1 TTTTT-AAAAAATTATAGA
22232110 -TTTTAAAAAATTATAGA
1 TTTTTAAAAAATTATAGA
22232127 TTTTTAAA
1 TTTTTAAA
22232135 TTTTTTTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.54
18 11 0.46
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (18 bp):
TTTTTAAAAAATTATAGA
Found at i:22232842 original size:31 final size:29
Alignment explanation
Indices: 22232774--22232843 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
22232764 CTCAGGTTAC
* * *
22232774 ATTTTAGTCACTTATGTTTGAAATGTTAT
1 ATTTTAGTCACTTACGTTTCAAATGTAAT
* *
22232803 GTTTTAGTCACTTACGTTATCATATTGTAAT
1 ATTTTAGTCACTTACGTT-TCA-AATGTAAT
22232834 ATTTTAGTCA
1 ATTTTAGTCA
22232844 TTGAGCCATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 16 0.48
30 2 0.06
31 15 0.45
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.50
Consensus pattern (29 bp):
ATTTTAGTCACTTACGTTTCAAATGTAAT
Found at i:22234979 original size:37 final size:37
Alignment explanation
Indices: 22234920--22234997 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
22234910 ATAATCACAT
* * *
22234920 ATTTACATGTCACTTTTTAATATATTAAGTAAATACC
1 ATTTACATGTCACGTTTCAATATATCAAGTAAATACC
* * *
22234957 ATTTTCATGTCACGTTTCAATATATCATGTAAATATC
1 ATTTACATGTCACGTTTCAATATATCAAGTAAATACC
22234994 ATTT
1 ATTT
22234998 CCAAGTATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.35, C:0.14, G:0.06, T:0.45
Consensus pattern (37 bp):
ATTTACATGTCACGTTTCAATATATCAAGTAAATACC
Found at i:22236034 original size:33 final size:33
Alignment explanation
Indices: 22235952--22236061 Score: 87
Period size: 33 Copynumber: 3.3 Consensus size: 33
22235942 TGGCCCTGCC
** * **
22235952 ATGGTCTTACATTTGTAGTGCCATAACCCAGTT
1 ATGGTCTTACATTTAAAATGCCATAACCCAACT
* *
22235985 ATGGTCTTTTCA-TTAAAATGTCATAACCCAACT
1 ATGGTC-TTACATTTAAAATGCCATAACCCAACT
*** *
22236018 ATGGTCTTACATTTAAACATTGCCATGGTCCAACC
1 ATGGTCTTACATTTAAA-A-TGCCATAACCCAACT
22236053 ATGGTCTTA
1 ATGGTCTTA
22236062 TTTGTCAATT
Statistics
Matches: 60, Mismatches: 13, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
32 4 0.07
33 32 0.53
34 5 0.08
35 19 0.32
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (33 bp):
ATGGTCTTACATTTAAAATGCCATAACCCAACT
Found at i:22238333 original size:27 final size:27
Alignment explanation
Indices: 22238299--22238367 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
22238289 ATGTCTGAAT
22238299 ATATTCAATTATTTATTCACCAAAAATC
1 ATATTCAATTATTTATTCACCAAAAA-C
*
22238327 -TATTCAATTATTTATTCACTAAAAAC
1 ATATTCAATTATTTATTCACCAAAAAC
*
22238353 ATATTCAATCATTTA
1 ATATTCAATTATTTA
22238368 AATGTGTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 1 0.03
27 37 0.97
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (27 bp):
ATATTCAATTATTTATTCACCAAAAAC
Found at i:22241505 original size:77 final size:79
Alignment explanation
Indices: 22241424--22241591 Score: 285
Period size: 77 Copynumber: 2.2 Consensus size: 79
22241414 ATGAACGATT
*
22241424 TATAAAATT-AAA-ATTTATTTGTATTTATTTATTTTCTTAAATATTTTTAATTTTTTAAAGATC
1 TATAAAATTAAAACATTTATTTGTATTTATTTATTTTCTAAAATATTTTTAATTTTTTAAAGATC
22241487 CTAAAAGGTGCCAA
66 CTAAAAGGTGCCAA
22241501 TAT--AATTAAAACATTTATTTGTATTTATTTATTTTCTAAAATATTTTTAATTTTTTAAAGATC
1 TATAAAATTAAAACATTTATTTGTATTTATTTATTTTCTAAAATATTTTTAATTTTTTAAAGATC
22241564 CTAAAAGGTGCCAA
66 CTAAAAGGTGCCAA
22241578 TAT--AATTAAAACAT
1 TATAAAATTAAAACAT
22241592 CGATACACAA
Statistics
Matches: 88, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
75 4 0.05
76 3 0.03
77 81 0.92
ACGTcount: A:0.39, C:0.07, G:0.06, T:0.48
Consensus pattern (79 bp):
TATAAAATTAAAACATTTATTTGTATTTATTTATTTTCTAAAATATTTTTAATTTTTTAAAGATC
CTAAAAGGTGCCAA
Found at i:22241750 original size:22 final size:21
Alignment explanation
Indices: 22241724--22241769 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
22241714 TTATTTTTTA
*
22241724 ATTTTT-TAAATTTTATTTAAT
1 ATTTTTATAAATTTTA-ATAAT
22241745 ATTTTTATAAATTTTAATAAT
1 ATTTTTATAAATTTTAATAAT
22241766 ATTT
1 ATTT
22241770 GACATATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
ATTTTTATAAATTTTAATAAT
Done.