Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 78 of 167
Found at i:25174162 original size:18 final size:18
Alignment explanation
Indices: 25174139--25174174 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
25174129 GTTTTGTTAA
25174139 GTGAATTTTAGCAAAAAT
1 GTGAATTTTAGCAAAAAT
25174157 GTGAATTTTAGCAAAAAT
1 GTGAATTTTAGCAAAAAT
25174175 ATCAATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.06, G:0.17, T:0.33
Consensus pattern (18 bp):
GTGAATTTTAGCAAAAAT
Found at i:25174181 original size:18 final size:18
Alignment explanation
Indices: 25174142--25174183 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
25174132 TTGTTAAGTG
* *
25174142 AATTTTAGCAAAAATGTG
1 AATTTTAGCAAAAATATC
25174160 AATTTTAGCAAAAATATC
1 AATTTTAGCAAAAATATC
25174178 AATTTT
1 AATTTT
25174184 GGACTAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (18 bp):
AATTTTAGCAAAAATATC
Found at i:25177205 original size:45 final size:44
Alignment explanation
Indices: 25177148--25177319 Score: 166
Period size: 50 Copynumber: 3.7 Consensus size: 44
25177138 CATGTGAGCT
* *
25177148 AGTGTAAAACCATGTCTGGGACATGGCATCAGCTTGATATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GCTCGATATGTGTC
* * * * *
25177193 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGAAAGAGGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GCTC-G--ATA--TGTGTC
25177243 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATATGTGATTAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCG-CTCGATATGTG--T-C
25177291 A-TGTAAGACCATGTCTGGGACATTGGCAT
1 AGTGTAAGACCATGTCTGGGACA-TGGCAT
25177320 TGTATTGTGA
Statistics
Matches: 104, Mismatches: 13, Indels: 17
0.78 0.10 0.13
Matches are distributed among these distances:
45 33 0.32
46 1 0.01
47 23 0.22
48 10 0.10
49 2 0.02
50 35 0.34
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGCTCGATATGTGTC
Found at i:25177343 original size:43 final size:45
Alignment explanation
Indices: 25177149--25177387 Score: 149
Period size: 43 Copynumber: 5.2 Consensus size: 45
25177139 ATGTGAGCTA
* * * *
25177149 GTGTAAAACCATGTCTGGGACATGGCATCAGCTTGATATGTG-TCA-
1 GTGTAAGACCATGTCTGGGACATGGCATC-G-ATCATATGTGATTAC
* * *
25177194 GTGTAAGACCATGTCTGGGACATGGCATCGGCA-CGGA-AAGAGGA-GAGCC
1 GTGTAAGACCATGTCTGGGACATGGCATC-G-ATC--ATATG-TGATTA--C
25177243 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATATGTGATTAC
1 -GTGTAAGACCATGTCTGGGACATGGCATCGA-TC-ATATGTGATTAC
* * *
25177291 ATGTAAGACCATGTCTGGGACATTGGCATTG-T-AT-TGTGATTTC
1 GTGTAAGACCATGTCTGGGACA-TGGCATCGATCATATGTGATTAC
* * *
25177334 GTGTAAGACCCTGTGTGGGACAGTGGCATCG---ATATGTGATAAC
1 GTGTAAGACCATGTCTGGGACA-TGGCATCGATCATATGTGATTAC
*
25177377 ATGTAAGACCA
1 GTGTAAGACCA
25177388 AATCTAGGAT
Statistics
Matches: 158, Mismatches: 22, Indels: 30
0.75 0.10 0.14
Matches are distributed among these distances:
42 2 0.01
43 50 0.32
44 2 0.01
45 32 0.20
46 4 0.03
47 21 0.13
48 9 0.06
49 5 0.03
50 33 0.21
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (45 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGATCATATGTGATTAC
Found at i:25184875 original size:181 final size:180
Alignment explanation
Indices: 25184542--25184895 Score: 523
Period size: 181 Copynumber: 2.0 Consensus size: 180
25184532 GAGCTAAGGA
* * * *
25184542 ACTCCAAATTAAGATCCGTTGATTTTCCTAGAAACTAGACTCACATATATTCTTACCATAACATT
1 ACTCCAAATTAAGAACCGCTAATTTTCCTAGAAACTAGACTCACATATATTCTTACCATAAAATT
* *
25184607 TTCAGAATTTTTGGTTTAGCCAATTAGTACAGTTTATTCATTAAAGTTACCCCTATTTCACTGTC
66 TTCAGAATTTTTGGTTTAGCCAATTAGTACAGTTTATTCATTAAAGATACCCCTATTTCACTATC
* *
25184672 CAATAGTTCCAACCTCTCTTCACTAAAAGTTATATATATCTCATGATACGAG
131 CAACAGTTCCAACCTCTCTTCACTAAAAATTAT-T-TATCTCATGATACGAG
25184724 ACTCCAAATTAAGAACCGCTAATTTTACC-AGAAACTAGACTCAC-TATATTCTTACCATAAAAT
1 ACTCCAAATTAAGAACCGCTAATTTT-CCTAGAAACTAGACTCACATATATTCTTACCATAAAAT
*
25184787 TTTCAGAATTTTTGGTTTAGCCAATTAGTACAGTTTATTCATTAAAGATACCCCTGTTTCACTAT
65 TTTCAGAATTTTTGGTTTAGCCAATTAGTACAGTTTATTCATTAAAGATACCCCTATTTCACTAT
** * * * * *
25184852 CTGACGGTTTCGATCTTTCTTCACTAAAAATTATTTATCTCATG
130 CCAACAGTTCCAACCTCTCTTCACTAAAAATTATTTATCTCATG
25184896 GTACAGATCT
Statistics
Matches: 155, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
179 9 0.06
180 1 0.01
181 105 0.68
182 38 0.25
183 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.37
Consensus pattern (180 bp):
ACTCCAAATTAAGAACCGCTAATTTTCCTAGAAACTAGACTCACATATATTCTTACCATAAAATT
TTCAGAATTTTTGGTTTAGCCAATTAGTACAGTTTATTCATTAAAGATACCCCTATTTCACTATC
CAACAGTTCCAACCTCTCTTCACTAAAAATTATTTATCTCATGATACGAG
Found at i:25185723 original size:151 final size:151
Alignment explanation
Indices: 25185455--25185893 Score: 610
Period size: 151 Copynumber: 2.9 Consensus size: 151
25185445 ACCGAAGCTC
* * * * *
25185455 TCTGGTACGCATAGTAGCCTGTACTTTGTACTGCACATGCGACCTATCAATCTGGTAGATGTAGT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGT
* * * *
25185520 AGCCTGCACTTAGTACTACACACGTGGCTTATCCATCTGATACACGTAGTAGCCTGCACTTAGTA
66 AGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACATAGTAGCCTGCACTTAGTA
**
25185585 CTACACACGTGATCGAAGTTAA
131 CTACACACGTGATCGAAACT-A
* * *
25185607 T-TGGTACGCATAATAGCCTACACTTAGTACTACACATGCGACCTATCAATCCGGTACACGTAGT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGT
*
25185671 AGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACATCGTAGCCTGCACTTAGTA
66 AGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACATAGTAGCCTGCACTTAGTA
25185736 CTACACACGTGATCGAAACTA
131 CTACACACGTGATCGAAACTA
* * * * *
25185757 TCAGGTACGCATAGTAGCGTGCGCTTAGTATTACACATGCGACCTAACAATCTGGTACACGTAGT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGT
* ** * * *
25185822 AGCCTGCACTTCGTACTACACACGTGACCTAAAACTGTCTTAAACACATAGTAGCCTGCACATAG
66 AGCCTGCACTTAGTACTACACACGTGACCT--AACCATCTGATACACATAGTAGCCTGCACTTAG
25185887 TACTACA
129 TACTACA
25185894 ATATGTTCTC
Statistics
Matches: 254, Mismatches: 30, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
150 2 0.01
151 217 0.85
152 1 0.00
153 34 0.13
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (151 bp):
TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGT
AGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACATAGTAGCCTGCACTTAGTA
CTACACACGTGATCGAAACTA
Found at i:25185764 original size:101 final size:100
Alignment explanation
Indices: 25185455--25185893 Score: 376
Period size: 101 Copynumber: 4.3 Consensus size: 100
25185445 ACCGAAGCTC
* * * * * * * * * **
25185455 TCTGGTACGCATAGTAGCCTGTACTTTGTACTGCACATGCGACCTATCAATCTGGTAGATGTAGT
1 TCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACATAGT
* ** * *
25185520 AGCCTGCACTTAGTACTACACACGTGGCTTATCCA
66 AGCCTGCACTTAGTACTACACACGTGACAAAACTA
* * * * *
25185555 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAAT-TGGTACGCATA
1 TCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA--CAATCTGGTACACATA
* * * * ** * *
25185619 ATAGCCTACACTTAGTACTACACATGCGACCTATCAA
64 GTAGCCTGCACTTAGTACTACACACGTGACAAAACTA
* * * * * *
25185656 TCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACATCGT
1 TCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACATAGT
*
25185721 AGCCTGCACTTAGTACTACACACGTGATCGAAACTA
66 AGCCTGCACTTAGTACTACACACGTGA-CAAAACTA
* * * * * * * * *
25185757 TCAGGTACGCATAGTAGCGTGCGCTTAGTATTACACATGCGACCTAACAATCTGGTACACGTAGT
1 TCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACATAGT
* *
25185822 AGCCTGCACTTCGTACTACACACGTGACCTAAAACTG
66 AGCCTGCACTTAGTACTACACACGTGA-C-AAAACTA
* * *
25185859 TCTTAAACACATAGTAGCCTGCACATAGTACTACA
1 TCTGATACACATAGTAGCCTGCACTTAGTACTACA
25185894 ATATGTTCTC
Statistics
Matches: 269, Mismatches: 65, Indels: 8
0.79 0.19 0.02
Matches are distributed among these distances:
99 2 0.01
100 69 0.26
101 164 0.61
102 34 0.13
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (100 bp):
TCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACATAGT
AGCCTGCACTTAGTACTACACACGTGACAAAACTA
Found at i:25185853 original size:50 final size:50
Alignment explanation
Indices: 25185455--25185893 Score: 398
Period size: 50 Copynumber: 8.7 Consensus size: 50
25185445 ACCGAAGCTC
* * * * * * *
25185455 TCTGGTACGCATAGTAGCCTGTACTTTGTACTGCACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* ** * * * *
25185505 TCTGGTAGATGTAGTAGCCTGCACTTAGTACTACACACGTGGCTTATCCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * * *
25185555 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA--CAA
* * * * * *
25185607 T-TGGTACGCATAATAGCCTACACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * *
25185656 TCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * ** *
25185706 TCTGATACACATCGTAGCCTGCACTTAGTACTACACACGTGATCGAAACTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACAA
* * * * * * *
25185757 TCAGGTACGCATAGTAGCGTGCGCTTAGTATTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* *
25185807 TCTGGTACACGTAGTAGCCTGCACTTCGTACTACACACGTGACCTAA-AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* *
25185856 -CTGTCTTAAACACATAGTAGCCTGCACATAGTACTACA
1 TCTG--GT--ACACATAGTAGCCTGCACTTAGTACTACA
25185894 ATATGTTCTC
Statistics
Matches: 307, Mismatches: 74, Indels: 14
0.78 0.19 0.04
Matches are distributed among these distances:
48 3 0.01
49 5 0.02
50 198 0.64
51 73 0.24
52 28 0.09
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
Found at i:25191783 original size:40 final size:40
Alignment explanation
Indices: 25191736--25191921 Score: 363
Period size: 40 Copynumber: 4.7 Consensus size: 40
25191726 TACTGATATG
25191736 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
25191776 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
25191816 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
25191856 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
25191896 ACCGGGCTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
25191922 AGCAAGTAGT
Statistics
Matches: 145, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 145 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:25192221 original size:22 final size:21
Alignment explanation
Indices: 25192180--25192223 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
25192170 GAATGTGCAT
25192180 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
25192202 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
25192224 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:25195752 original size:181 final size:179
Alignment explanation
Indices: 25195446--25195795 Score: 493
Period size: 181 Copynumber: 1.9 Consensus size: 179
25195436 GATCTACGGA
*** * * * * *
25195446 ACTCCAAATTAAGATTTGTTAATTTTCCCAAAAATAGACTTACATATATTCTTACCATAACATTT
1 ACTCCAAATTAAGAACCGCTAACTTTACCAAAAATAAACTTACATATATTCTTACCATAAAATTT
* * * ** *
25195511 TCAGAATTTTTGGTTTAGCCAATTAGTACAGTTTAGTCATTAAAGTTACCCCTATTTCACTGTCC
66 TAAGAATTTTTGGTTTAACCAATTAGTACAATTTAGTCATTAAAAATACCCCTATTTCACTATCC
25195576 AACAGTTCCGACCTCTCTTCACTAAAAAAATATTTATCTCTTGGTACGAG
131 AACAGTTCCGACCTCTCTTCACT-AAAAAATATTTATCTCTTGGTACGAG
25195626 ACTCCAAATTAAGAACCGCTAACTTTACCAAAAATTAAACTTACATATATTCTTACCATAAAATT
1 ACTCCAAATTAAGAACCGCTAACTTTACCAAAAA-TAAACTTACATATATTCTTACCATAAAATT
* *
25195691 TTAAGAATTTTTGGTTTAACCAATTAGTACAATTTATTCATTAAAAATACCCCTGTTTCACTATC
65 TTAAGAATTTTTGGTTTAACCAATTAGTACAATTTAGTCATTAAAAATACCCCTATTTCACTATC
** * * *
25195756 TGATAGTTCCGATCTTTCTTCACTAAAAAATATTTATCTC
130 CAACAGTTCCGACCTCTCTTCACTAAAAAATATTTATCTC
25195796 ATGATATAGA
Statistics
Matches: 148, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
180 44 0.30
181 104 0.70
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.37
Consensus pattern (179 bp):
ACTCCAAATTAAGAACCGCTAACTTTACCAAAAATAAACTTACATATATTCTTACCATAAAATTT
TAAGAATTTTTGGTTTAACCAATTAGTACAATTTAGTCATTAAAAATACCCCTATTTCACTATCC
AACAGTTCCGACCTCTCTTCACTAAAAAATATTTATCTCTTGGTACGAG
Found at i:25199737 original size:133 final size:133
Alignment explanation
Indices: 25199499--25199764 Score: 523
Period size: 133 Copynumber: 2.0 Consensus size: 133
25199489 TACTGAAATA
25199499 TTTTCCGCCGGCGAAAATAGCTAAATTACGTAATGATATCTCTTCTTTTGTGTAGATGGATTTGG
1 TTTTCCGCCGGCGAAAATAGCTAAATTACGTAATGATATCTCTTCTTTTGTGTAGATGGATTTGG
25199564 AAACACTTTACGATGCATGGGAGAGATACAAGGACTTACTGAGAAGGTGCCCTCACCATGGGTTA
66 AAACACTTTACGATGCATGGGAGAGATACAAGGACTTACTGAGAAGGTGCCCTCACCATGGGTTA
25199629 CCG
131 CCG
25199632 TTTTCCGCCGGCGAAAATAGCTAAATTACGTAATGATATCTCTTCTTTTGTGTAGATGGATTTGG
1 TTTTCCGCCGGCGAAAATAGCTAAATTACGTAATGATATCTCTTCTTTTGTGTAGATGGATTTGG
*
25199697 AAACACTTTACGATGCATGGGAGAGATACAAGGACTTACTGAGAAGGTGCCCTCACTATGGGTTA
66 AAACACTTTACGATGCATGGGAGAGATACAAGGACTTACTGAGAAGGTGCCCTCACCATGGGTTA
25199762 CCG
131 CCG
25199765 CTTCGGCTTC
Statistics
Matches: 132, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 132 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (133 bp):
TTTTCCGCCGGCGAAAATAGCTAAATTACGTAATGATATCTCTTCTTTTGTGTAGATGGATTTGG
AAACACTTTACGATGCATGGGAGAGATACAAGGACTTACTGAGAAGGTGCCCTCACCATGGGTTA
CCG
Found at i:25208832 original size:48 final size:47
Alignment explanation
Indices: 25208773--25208927 Score: 129
Period size: 48 Copynumber: 3.3 Consensus size: 47
25208763 TCCTAGCCAC
25208773 GTCTTACACTGGCACGTATCTCTACGCCGATGCCATGTCCCAGACATG
1 GTCTTACACTGGC-CGTATCTCTACGCCGATGCCATGTCCCAGACATG
* * * * *
25208821 GTCTTACACTGGCTGTCGTA-ATGT-GGCTGATG-CATGTCCCAGACA-C
1 GTCTTACACTGGC---CGTATCTCTACGCCGATGCCATGTCCCAGACATG
* * * * ***
25208867 GTCTTACACTAGCCCTCGTCTCAATTTCGATGCCATGTCCCAGACATG
1 GTCTTACACTGGCCGT-ATCTCTACGCCGATGCCATGTCCCAGACATG
25208915 GTCTTACACTGGC
1 GTCTTACACTGGC
25208928 TTTCACATAA
Statistics
Matches: 82, Mismatches: 18, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
43 2 0.02
45 1 0.01
46 16 0.20
47 26 0.32
48 31 0.38
49 2 0.02
50 4 0.05
ACGTcount: A:0.20, C:0.31, G:0.21, T:0.28
Consensus pattern (47 bp):
GTCTTACACTGGCCGTATCTCTACGCCGATGCCATGTCCCAGACATG
Found at i:25208858 original size:47 final size:46
Alignment explanation
Indices: 25208800--25208928 Score: 149
Period size: 47 Copynumber: 2.8 Consensus size: 46
25208790 ATCTCTACGC
25208800 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-GTCGT-AATGTGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCGTC-TCAAT-T-G
* * *
25208847 CTGATG-CATGTCCCAGACA-CGTCTTACACTAGCCCTCGTCTCAATTT
1 C-GATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCGTCTCAATTG
25208894 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT
25208929 TTCACATAAC
Statistics
Matches: 70, Mismatches: 5, Indels: 15
0.78 0.06 0.17
Matches are distributed among these distances:
46 16 0.23
47 30 0.43
48 18 0.26
49 6 0.09
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.28
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCGTCTCAATTG
Found at i:25208868 original size:94 final size:94
Alignment explanation
Indices: 25208756--25208928 Score: 249
Period size: 94 Copynumber: 1.8 Consensus size: 94
25208746 ATTAAGGCCA
* * * * *
25208756 ATGCATGTCCTAGCCACGTCTTACACTGGCACGT-ATCTCTACGCCGATGCCATGTCCCAGACAT
1 ATGCATGTCCCAGACACGTCTTACACTAGC-CCTCATCTCAACGCCGATGCCATGTCCCAGACAT
25208820 GGTCTTACACTGGCTGTCGTAATGTGGCTG
65 GGTCTTACACTGGCTGTCGTAATGTGGCTG
* ***
25208850 ATGCATGTCCCAGACACGTCTTACACTAGCCCTCGTCTCAATTTCGATGCCATGTCCCAGACATG
1 ATGCATGTCCCAGACACGTCTTACACTAGCCCTCATCTCAACGCCGATGCCATGTCCCAGACATG
25208915 GTCTTACACTGGCT
66 GTCTTACACTGGCT
25208929 TTCACATAAC
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
93 2 0.03
94 67 0.97
ACGTcount: A:0.20, C:0.31, G:0.21, T:0.28
Consensus pattern (94 bp):
ATGCATGTCCCAGACACGTCTTACACTAGCCCTCATCTCAACGCCGATGCCATGTCCCAGACATG
GTCTTACACTGGCTGTCGTAATGTGGCTG
Found at i:25226984 original size:96 final size:95
Alignment explanation
Indices: 25226750--25227098 Score: 392
Period size: 96 Copynumber: 3.7 Consensus size: 95
25226740 TGACACACGC
* *
25226750 CCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGTGCTGATGCATGTCCCAAACATGTCTTAC
1 CCCAGACATGGTCTTACACTAGCTCTCGT-TATAAGTGCTGATGCATGTCCCAGACACGTCTTAC
* ** ** * * * *
25226815 ACTAGCACGAAGCT-TA-ACTGATG-TATGT
65 ACTGGCACTCATTTCTACGCCGATGCCATAT
** * * * *
25226843 CCCAGACA-CATCTTACACTGGCTAC-CATCATTGAG-GCTGATGCATGTCCCAGACACGTCTTA
1 CCCAGACATGGTCTTACACTAGCT-CTCGTTA-TAAGTGCTGATGCATGTCCCAGACACGTCTTA
25226905 CACTGGCACTCATTTCTACGCCGATGCCATAT
64 CACTGGCACTCATTTCTACGCCGATGCCATAT
25226937 CCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGTGCTGATGCATGTCCCAGACACGTCTTAC
1 CCCAGACATGGTCTTACACTAGCTCTCGT-TATAAGTGCTGATGCATGTCCCAGACACGTCTTAC
25227002 ACTGGCACTCATTTCTACGCCGATGCCATAT
65 ACTGGCACTCATTTCTACGCCGATGCCATAT
* * * *
25227033 CCCAGACATGGTCTTGCACTGGCTATC---ATAATGTGGCTGATACATGTCCCAGACACGTCTTA
1 CCCAGACATGGTCTTACACTAGCTCTCGTTATAA-GT-GCTGATGCATGTCCCAGACACGTCTTA
25227095 CACT
64 CACT
25227099 AGCCCTTGTC
Statistics
Matches: 218, Mismatches: 27, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
91 36 0.17
92 23 0.11
93 16 0.07
94 42 0.19
95 17 0.08
96 84 0.39
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (95 bp):
CCCAGACATGGTCTTACACTAGCTCTCGTTATAAGTGCTGATGCATGTCCCAGACACGTCTTACA
CTGGCACTCATTTCTACGCCGATGCCATAT
Found at i:25226999 original size:48 final size:47
Alignment explanation
Indices: 25226750--25227101 Score: 202
Period size: 47 Copynumber: 7.5 Consensus size: 47
25226740 TGACACACGC
*
25226750 CCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGTGCTGATGCATGT
1 CCCAGACA-CGTCTTACACTAGCTCTCGTGTATAAG-GCTGATGCATGT
* * * * *
25226799 CCCAAACATGTCTTACACTAG--CACGAAGCT-TAA--CTGATGTATGT
1 CCCAGACACGTCTTACACTAGCTCTCG-TG-TATAAGGCTGATGCATGT
* * * * *
25226843 CCCAGACACATCTTACACTGGCTAC-CAT-CATTGAGGCTGATGCATGT
1 CCCAGACACGTCTTACACTAGCT-CTCGTGTA-TAAGGCTGATGCATGT
* * * * * * * *
25226890 CCCAGACACGTCTTACACTGGCACTCATTTCT-ACGCCGATGCCATAT
1 CCCAGACACGTCTTACACTAGCTCTCGTGTATAAGGCTGATG-CATGT
*
25226937 CCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGTGCTGATGCATGT
1 CCCAGACA-CGTCTTACACTAGCTCTCGTGTATAAG-GCTGATGCATGT
* * * * * * * *
25226986 CCCAGACACGTCTTACACTGGCACTCATTTCT-ACGCCGATGCCATAT
1 CCCAGACACGTCTTACACTAGCTCTCGTGTATAAGGCTGATG-CATGT
* * * * * * ** *
25227033 CCCAGACATGGTCTTGCACTGGCTATCAT-AATGTGGCTGATACATGT
1 CCCAGACA-CGTCTTACACTAGCTCTCGTGTATAAGGCTGATGCATGT
25227080 CCCAGACACGTCTTACACTAGC
1 CCCAGACACGTCTTACACTAGC
25227102 CCTTGTCTCA
Statistics
Matches: 232, Mismatches: 53, Indels: 39
0.72 0.16 0.12
Matches are distributed among these distances:
44 27 0.12
45 2 0.01
46 29 0.12
47 78 0.34
48 70 0.30
49 20 0.09
50 6 0.03
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
CCCAGACACGTCTTACACTAGCTCTCGTGTATAAGGCTGATGCATGT
Found at i:25227495 original size:17 final size:17
Alignment explanation
Indices: 25227452--25227495 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
25227442 ATGTGCTCAT
* *
25227452 TTAGTCATTAGTTACAA
1 TTAGGCATTCGTTACAA
25227469 TTAGGCATTCGTTACAA
1 TTAGGCATTCGTTACAA
25227486 TTAGGCATTC
1 TTAGGCATTC
25227496 ATAATTTCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.39
Consensus pattern (17 bp):
TTAGGCATTCGTTACAA
Found at i:25228685 original size:50 final size:50
Alignment explanation
Indices: 25228618--25228948 Score: 295
Period size: 50 Copynumber: 6.6 Consensus size: 50
25228608 CTGGTACGTA
* *
25228618 TAGTAGCCTACACTTAGTACTACACATGCAACCTATCAATCTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
* * * * * * *
25228668 TAGTAGCCTACATTTAGTACTACACACGTGACTTATCCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
* * * * * *
25228718 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACATG
1 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
*** * * * * *
25228768 TAGTAGCCTACACTTAGTACTACACACATGA-TTGAAACTATCGGGTACGCA
1 TAGTAGCCTACACTTAGTACTACACATGCGACCT--AACAATCTGGTACACG
**
25228819 TAGTAGCCCGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
* **** * *** *
25228869 TAGTAGCCTGCACTTAGTACTACACACATAACCTAAAACTATCTTAAACACA
1 TAGTAGCCTACACTTAGTACTACACATGCGACCT--AACAATCTGGTACACG
*
25228921 TAGTAGCCTACACATAGTACTACACATG
1 TAGTAGCCTACACTTAGTACTACACATG
25228949 TGTTCTCATA
Statistics
Matches: 231, Mismatches: 45, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
49 1 0.00
50 158 0.68
51 36 0.16
52 36 0.16
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
Found at i:25228854 original size:101 final size:100
Alignment explanation
Indices: 25228610--25228897 Score: 380
Period size: 101 Copynumber: 2.9 Consensus size: 100
25228600 GAAGCTCTCT
* * * *
25228610 GGTACGTATAGTAGCCTACACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGC
* * * *
25228675 CTACATTTAGTACTACACACGTGACTTATCCATCT
66 CTACACTTAGTACTACACACATGACTTAACCATCG
* * * * * * * *
25228710 GATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACATGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGC
*
25228775 CTACACTTAGTACTACACACATGA-TTGAAACTATCG
66 CTACACTTAGTACTACACACATGACTT--AACCATCG
*
25228811 GGTACGCATAGTAGCCCGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGC
*
25228876 CTGCACTTAGTACTACACACAT
66 CTACACTTAGTACTACACACAT
25228898 AACCTAAAAC
Statistics
Matches: 159, Mismatches: 27, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
99 2 0.01
100 75 0.47
101 82 0.52
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGC
CTACACTTAGTACTACACACATGACTTAACCATCG
Found at i:25228947 original size:151 final size:150
Alignment explanation
Indices: 25228617--25228948 Score: 387
Period size: 151 Copynumber: 2.2 Consensus size: 150
25228607 TCTGGTACGT
* * * * * *
25228617 ATAGTAGCCTACACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGCCTACATT
1 ATAGTAGCCTACACTTAGTACTACACATGCAACCAAACAATCGGGTACACATAGTAGCCCACACT
* * * * *
25228682 TAGTACTACACACGTGACTTATCCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGT
66 TAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACAT
* * *
25228747 GACCTAACCATCTGATACAT
131 AACCTAACCATCTGAAACAC
* *** * * *
25228767 GTAGTAGCCTACACTTAGTACTACACACATG-ATTGAAACTATCGGGTACGCATAGTAGCCCGCA
1 ATAGTAGCCTACACTTAGTACT--ACACATGCAACCAAACAATCGGGTACACATAGTAGCCCACA
* *
25228831 CTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAC
64 CTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTACTACACAC
* *
25228896 ATAACCTAAAACTATCTTAAACAC
129 ATAACCT--AACCATCTGAAACAC
*
25228920 ATAGTAGCCTACACATAGTACTACACATG
1 ATAGTAGCCTACACTTAGTACTACACATG
25228949 TGTTCTCATA
Statistics
Matches: 151, Mismatches: 27, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
150 21 0.14
151 92 0.61
152 7 0.05
153 31 0.21
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.26
Consensus pattern (150 bp):
ATAGTAGCCTACACTTAGTACTACACATGCAACCAAACAATCGGGTACACATAGTAGCCCACACT
TAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACAT
AACCTAACCATCTGAAACAC
Found at i:25232294 original size:21 final size:21
Alignment explanation
Indices: 25232268--25232314 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
25232258 AGTACACAGA
* *
25232268 CATGTGAAATAGCCACTCGGG
1 CATGTGAAATAGCCACACGGC
* *
25232289 CATGTGGAGTAGCCACACGGC
1 CATGTGAAATAGCCACACGGC
25232310 CATGT
1 CATGT
25232315 TCTGAGCCAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.30, T:0.19
Consensus pattern (21 bp):
CATGTGAAATAGCCACACGGC
Found at i:25239830 original size:48 final size:47
Alignment explanation
Indices: 25239693--25239832 Score: 142
Period size: 49 Copynumber: 2.9 Consensus size: 47
25239683 AGGGGATACT
* * *
25239693 TTGATTTGGCTTCGGGCCATG-TATTGGCACTTCGGGTGTGAGCTTCA
1 TTGATTTGGCTTCGGGCCATGATATTGGCACTT-AGGTGCGAGATTCA
* * *
25239740 TTGATTTGGGTTCGGGCCCCA-GATATTAGCACTTTGGATGCGAGATAT-A
1 TTGATTTGGCTTCGGG--CCATGATATTGGCACTTAGG-TGCGAGAT-TCA
*
25239789 TTGAGTTGGCTTCGGGCCATGATATTGGCACTTAGTGTGCGAGA
1 TTGATTTGGCTTCGGGCCATGATATTGGCACTTAG-GTGCGAGA
25239833 CTCCTGAGTA
Statistics
Matches: 77, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
47 18 0.23
48 23 0.30
49 35 0.45
50 1 0.01
ACGTcount: A:0.18, C:0.17, G:0.31, T:0.34
Consensus pattern (47 bp):
TTGATTTGGCTTCGGGCCATGATATTGGCACTTAGGTGCGAGATTCA
Found at i:25243991 original size:79 final size:81
Alignment explanation
Indices: 25243855--25244039 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
25243845 TTGAATGATG
*
25243855 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
25243919 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
25243934 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
25243996 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
25244014 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
25244040 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:25244053 original size:40 final size:40
Alignment explanation
Indices: 25243856--25244039 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
25243846 TGAATGATGT
* * * *
25243856 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
25243896 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
25243936 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
25243974 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
25244015 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
25244040 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:25244061 original size:79 final size:79
Alignment explanation
Indices: 25243856--25244072 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
25243846 TGAATGATGT
** * * * **
25243856 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
25243919 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
25243936 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
25244001 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
25244015 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
25244073 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:25251926 original size:39 final size:40
Alignment explanation
Indices: 25251831--25252053 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
25251821 TTGAATGATG
*
25251831 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
25251869 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
25251910 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
25251949 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
25251988 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
25252027 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
25252054 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:25252017 original size:79 final size:81
Alignment explanation
Indices: 25251831--25252053 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
25251821 TTGAATGATG
* * *
25251831 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
25251893 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
25251910 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
25251971 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
25251988 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
25252052 TG
66 TG
25252054 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:25252075 original size:79 final size:79
Alignment explanation
Indices: 25251831--25252086 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
25251821 TTGAATGATG
* * * *
25251831 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
25251892 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
25251910 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
25251974 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
25251988 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
25252051 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
25252068 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
25252087 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:25264108 original size:40 final size:40
Alignment explanation
Indices: 25264049--25264412 Score: 602
Period size: 40 Copynumber: 9.1 Consensus size: 40
25264039 GAGCATTGGA
*
25264049 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
25264089 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
25264129 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
25264169 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
25264209 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
25264249 ATATATCCGGGCTAAGACCCGAAAGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
25264289 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
25264329 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
25264369 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
25264409 ATAT
1 ATAT
25264413 NNNNNNNNNN
Statistics
Matches: 310, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 310 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:25276486 original size:23 final size:23
Alignment explanation
Indices: 25276456--25276501 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
25276446 GAGTTATCTG
25276456 TTATGGGC-TCCTGATATAAGCTC
1 TTATGGGCTTCCTGATAT-AGCTC
25276479 TTATGGGCTTCCTGATATAGCTC
1 TTATGGGCTTCCTGATATAGCTC
25276502 ACTTGAACTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 13 0.59
24 9 0.41
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (23 bp):
TTATGGGCTTCCTGATATAGCTC
Found at i:25276878 original size:30 final size:30
Alignment explanation
Indices: 25276827--25276923 Score: 140
Period size: 30 Copynumber: 3.2 Consensus size: 30
25276817 TATATGAATT
*
25276827 ATATGATCCCGAAATAATTGAAAGTTTGTG
1 ATATGATCCCGAAATACTTGAAAGTTTGTG
* *
25276857 ATATAATCCTGAAATACTTGAAAGTTTGTG
1 ATATGATCCCGAAATACTTGAAAGTTTGTG
* * *
25276887 TTATGGTCCCGAAATACTTGAAAGTTTGTA
1 ATATGATCCCGAAATACTTGAAAGTTTGTG
25276917 ATATGAT
1 ATATGAT
25276924 GAGCTCATCT
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 57 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.36
Consensus pattern (30 bp):
ATATGATCCCGAAATACTTGAAAGTTTGTG
Found at i:25285454 original size:17 final size:17
Alignment explanation
Indices: 25285432--25285464 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
25285422 CGTAGAATTT
25285432 CATGTTATTAATAAATA
1 CATGTTATTAATAAATA
25285449 CATGTTATTAATAAAT
1 CATGTTATTAATAAAT
25285465 GCAACCATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.42
Consensus pattern (17 bp):
CATGTTATTAATAAATA
Found at i:25291163 original size:27 final size:27
Alignment explanation
Indices: 25291124--25291301 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
25291114 TTATTGAGCC
* * *
25291124 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
25291151 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
*
25291178 CGCACACTTAGTGCCACATAGTCCAACT
1 CGCACACTTAGTGCTACATAGT-CAACT
* ** * *
25291206 TGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
25291233 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* * *
25291260 CGCACACTTAGTGCAACATAGTCGAGT
1 CGCACACTTAGTGCTACATAGTCAACT
*
25291287 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
25291302 GTACAATTTA
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 101 0.81
28 24 0.19
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:25299185 original size:27 final size:27
Alignment explanation
Indices: 25299155--25299332 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
25299145 ATATTGAGTC
* * * *
25299155 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
25299182 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
25299209 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
25299237 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
25299264 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
25299291 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
25299318 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
25299333 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:25299294 original size:82 final size:81
Alignment explanation
Indices: 25299176--25299331 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
25299166 TGCTATATAA
* *
25299176 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
25299241 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
25299258 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
25299322 CACTTAGTGC
65 CACTTAGTGC
25299332 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:25301072 original size:156 final size:156
Alignment explanation
Indices: 25300808--25301118 Score: 622
Period size: 156 Copynumber: 2.0 Consensus size: 156
25300798 ACCCTTCCTT
25300808 TACGTTCTTGTCGGGGCTCGAACCTCTAGTTTTGCAGTGTCTTTAGTCGCAATTGACTACCACTG
1 TACGTTCTTGTCGGGGCTCGAACCTCTAGTTTTGCAGTGTCTTTAGTCGCAATTGACTACCACTG
25300873 GCGCTTCTAGGTTATCTCGAAGGTCTACCTCGTGAAACGGGAGTACTCGACTTCGGGGTTACTTC
66 GCGCTTCTAGGTTATCTCGAAGGTCTACCTCGTGAAACGGGAGTACTCGACTTCGGGGTTACTTC
25300938 CACTTCTTTTTGGACTCGCTCTGGGA
131 CACTTCTTTTTGGACTCGCTCTGGGA
25300964 TACGTTCTTGTCGGGGCTCGAACCTCTAGTTTTGCAGTGTCTTTAGTCGCAATTGACTACCACTG
1 TACGTTCTTGTCGGGGCTCGAACCTCTAGTTTTGCAGTGTCTTTAGTCGCAATTGACTACCACTG
25301029 GCGCTTCTAGGTTATCTCGAAGGTCTACCTCGTGAAACGGGAGTACTCGACTTCGGGGTTACTTC
66 GCGCTTCTAGGTTATCTCGAAGGTCTACCTCGTGAAACGGGAGTACTCGACTTCGGGGTTACTTC
25301094 CACTTCTTTTTGGACTCGCTCTGGG
131 CACTTCTTTTTGGACTCGCTCTGGG
25301119 CAGTCCTTGA
Statistics
Matches: 155, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
156 155 1.00
ACGTcount: A:0.16, C:0.25, G:0.25, T:0.33
Consensus pattern (156 bp):
TACGTTCTTGTCGGGGCTCGAACCTCTAGTTTTGCAGTGTCTTTAGTCGCAATTGACTACCACTG
GCGCTTCTAGGTTATCTCGAAGGTCTACCTCGTGAAACGGGAGTACTCGACTTCGGGGTTACTTC
CACTTCTTTTTGGACTCGCTCTGGGA
Found at i:25308314 original size:14 final size:14
Alignment explanation
Indices: 25308295--25308322 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25308285 AATCAGTAGA
25308295 AGTTTTGATCAATT
1 AGTTTTGATCAATT
25308309 AGTTTTGATCAATT
1 AGTTTTGATCAATT
25308323 TTAAGTTAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (14 bp):
AGTTTTGATCAATT
Found at i:25323118 original size:41 final size:41
Alignment explanation
Indices: 25323061--25323148 Score: 158
Period size: 41 Copynumber: 2.1 Consensus size: 41
25323051 GTAGCTACGT
*
25323061 TAGGATCCATTTACTATATGAATAAAACATAATTTATCTTA
1 TAGGATCCATTTACTATATGAATAAAACACAATTTATCTTA
25323102 TAGGATCCATTTACTATATGAATAAAACACAATTTATCTTA
1 TAGGATCCATTTACTATATGAATAAAACACAATTTATCTTA
25323143 TCAGGA
1 T-AGGA
25323149 GTCGTCACAC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 41 0.91
42 4 0.09
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (41 bp):
TAGGATCCATTTACTATATGAATAAAACACAATTTATCTTA
Found at i:25324784 original size:50 final size:49
Alignment explanation
Indices: 25324673--25324806 Score: 157
Period size: 47 Copynumber: 2.8 Consensus size: 49
25324663 TAGGGTATAA
*
25324673 TGCTGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACGTTAAG
1 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCCCACGTTAAG
* * * **
25324722 T--TGATGCCATGTCCCACACATAGTCTTACACTGACTCCCATGTATCCG
1 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGACTCCCACGT-TAAG
* *
25324770 TGCTGATGCCATGTCCCAGACAGGGTCTTATACTGAC
1 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGAC
25324807 ACATCATGTA
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
47 36 0.51
48 4 0.06
49 1 0.01
50 30 0.42
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.28
Consensus pattern (49 bp):
TGCTGATGCCATGTCCCAGACATGGTCTTACACTGACTCCCACGTTAAG
Found at i:25328303 original size:27 final size:27
Alignment explanation
Indices: 25328270--25328388 Score: 134
Period size: 27 Copynumber: 4.4 Consensus size: 27
25328260 GGGCATAATT
*
25328270 GTCATTTTACCATACA-GGG-ATGTTACG
1 GTCATTTTACCCTACATGGGCA--TTACG
*
25328297 GTTATTTTACCCTACATGGGCATTACG
1 GTCATTTTACCCTACATGGGCATTACG
* *
25328324 GTCATTTTACCCTACAAGGGCATTACA
1 GTCATTTTACCCTACATGGGCATTACG
* * *
25328351 GTCATTTTACCCTATAAGAGCATTACG
1 GTCATTTTACCCTACATGGGCATTACG
*
25328378 ATCATTTTACC
1 GTCATTTTACC
25328389 TATTTTATGG
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
27 77 0.95
28 3 0.04
29 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACATGGGCATTACG
Found at i:25335343 original size:37 final size:37
Alignment explanation
Indices: 25335294--25335370 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
25335284 TTCCAGTTGA
* *
25335294 ATTATTATTTTTGTCCTTGTATTATACAAATTTAGAT
1 ATTAATATTTTTGTCCATGTATTATACAAATTTAGAT
*
25335331 ATTAATATTTTTGTCCATGTATTATACGAATTTAGAT
1 ATTAATATTTTTGTCCATGTATTATACAAATTTAGAT
25335368 ATT
1 ATT
25335371 CTAATTTATG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.31, C:0.08, G:0.09, T:0.52
Consensus pattern (37 bp):
ATTAATATTTTTGTCCATGTATTATACAAATTTAGAT
Found at i:25342516 original size:5 final size:5
Alignment explanation
Indices: 25342506--25342548 Score: 77
Period size: 5 Copynumber: 8.6 Consensus size: 5
25342496 TACTTCAACA
*
25342506 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ACAAT ATAAT ATA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
25342549 TGTTTAGTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (5 bp):
ATAAT
Found at i:25347896 original size:44 final size:45
Alignment explanation
Indices: 25347846--25347939 Score: 181
Period size: 44 Copynumber: 2.1 Consensus size: 45
25347836 TGTTTATACA
25347846 TCATAATTATAGACCTATAATCATAAGGTCATCACAAAATCATT-
1 TCATAATTATAGACCTATAATCATAAGGTCATCACAAAATCATTC
25347890 TCATAATTATAGACCTATAATCATAAGGTCATCACAAAATCATTC
1 TCATAATTATAGACCTATAATCATAAGGTCATCACAAAATCATTC
25347935 TCATA
1 TCATA
25347940 GGCATGACTT
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 44 0.90
45 5 0.10
ACGTcount: A:0.43, C:0.19, G:0.06, T:0.32
Consensus pattern (45 bp):
TCATAATTATAGACCTATAATCATAAGGTCATCACAAAATCATTC
Found at i:25350070 original size:3 final size:3
Alignment explanation
Indices: 25350062--25350110 Score: 50
Period size: 3 Copynumber: 16.7 Consensus size: 3
25350052 GTAATTTTGC
*
25350062 TAT TAT TAT TA- TAT TAT TGT TATT TAT TAT TAT TAT T-T T-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
25350105 ATAT TA
1 -TAT TA
25350111 GTGTATATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
2 6 0.15
3 28 0.70
4 6 0.15
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:25350291 original size:15 final size:15
Alignment explanation
Indices: 25350271--25350304 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
25350261 TTTCATACAG
*
25350271 TATTATCATTTCTAT
1 TATTATCATATCTAT
*
25350286 TATTATTATATCTAT
1 TATTATCATATCTAT
25350301 TATT
1 TATT
25350305 TTCACTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (15 bp):
TATTATCATATCTAT
Found at i:25350566 original size:23 final size:22
Alignment explanation
Indices: 25350535--25350590 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 22
25350525 ATTCATGTAT
25350535 TTTAT-TATATAT-GTATATATC
1 TTTATGTATATATAG-ATATATC
*
25350556 TTTAATGTATATATAGGTATATC
1 TTT-ATGTATATATAGATATATC
25350579 TTTATGTA-ATAT
1 TTTATGTATATAT
25350591 TAGTATTGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
21 7 0.23
22 7 0.23
23 16 0.52
24 1 0.03
ACGTcount: A:0.34, C:0.04, G:0.09, T:0.54
Consensus pattern (22 bp):
TTTATGTATATATAGATATATC
Found at i:25351083 original size:9 final size:9
Alignment explanation
Indices: 25351069--25351095 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
25351059 ATATATCTTT
25351069 CTATTATTA
1 CTATTATTA
25351078 CTATTATTA
1 CTATTATTA
25351087 CTATTATTA
1 CTATTATTA
25351096 TTAGTGTGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (9 bp):
CTATTATTA
Found at i:25353047 original size:850 final size:850
Alignment explanation
Indices: 25351407--25353106 Score: 3400
Period size: 850 Copynumber: 2.0 Consensus size: 850
25351397 AATCTTATTC
25351407 TTGTTTTCTAATTAATTTCAATACATGAGGCAACGTATCGGTTTAATACTAAGTCAACGATTTCA
1 TTGTTTTCTAATTAATTTCAATACATGAGGCAACGTATCGGTTTAATACTAAGTCAACGATTTCA
25351472 TCGCTATGTTGGGTGAACATCAATCGACTCGTGTTAAAACAGTATGCCCTTCTAAAAAAACCAAA
66 TCGCTATGTTGGGTGAACATCAATCGACTCGTGTTAAAACAGTATGCCCTTCTAAAAAAACCAAA
25351537 AAAACACTAAAATTTCTCGTCTTTTCAACCGGATCACGATTAAATCCTACATTGAACCCGTATTT
131 AAAACACTAAAATTTCTCGTCTTTTCAACCGGATCACGATTAAATCCTACATTGAACCCGTATTT
25351602 TTGAAAATCAAGACAACGCGTGTTTTACAAGATACCAATTTTGGGCGTCGCGAGGGTGCTAATAC
196 TTGAAAATCAAGACAACGCGTGTTTTACAAGATACCAATTTTGGGCGTCGCGAGGGTGCTAATAC
25351667 CTTCCTCGCGCGTAACCGACTCCCGAACCCTACTTTTTCTCTGGATTTTGACGTAGACCTAAACT
261 CTTCCTCGCGCGTAACCGACTCCCGAACCCTACTTTTTCTCTGGATTTTGACGTAGACCTAAACT
25351732 CGGCCTTTTTTGTTTTAAAAATAAATTTATTAGGTGTCCGATCACACCTATAAAAAGGATCGGTG
326 CGGCCTTTTTTGTTTTAAAAATAAATTTATTAGGTGTCCGATCACACCTATAAAAAGGATCGGTG
25351797 GCGACTCCCTCTTTTTATTTCAAAATCAAACTTCAGTTTTCAAGTTTTCACTAAATCGCCACAAT
391 GCGACTCCCTCTTTTTATTTCAAAATCAAACTTCAGTTTTCAAGTTTTCACTAAATCGCCACAAT
25351862 TAGCGACCGAAAGCAAATTTTACGTCGCTACAATGATAAAAACCACTATTTTAATCATCATATTA
456 TAGCGACCGAAAGCAAATTTTACGTCGCTACAATGATAAAAACCACTATTTTAATCATCATATTA
25351927 ACCAATACATTTCATAATTTATACTTTGGCAAAATAACCATTTTGCCCTTAGACTTTACAAAAAT
521 ACCAATACATTTCATAATTTATACTTTGGCAAAATAACCATTTTGCCCTTAGACTTTACAAAAAT
25351992 TATGATTTTGCCCTTAGGCTCGTAAATCGATTTTTATCAATTTTTCACACTGTTCAAGCCTAGTC
586 TATGATTTTGCCCTTAGGCTCGTAAATCGATTTTTATCAATTTTTCACACTGTTCAAGCCTAGTC
25352057 AAATTCTTTTTATACTAGGAGCAGCCCACAATTCTCATTATTACTCATACTTATCACTCATTTTG
651 AAATTCTTTTTATACTAGGAGCAGCCCACAATTCTCATTATTACTCATACTTATCACTCATTTTG
25352122 CTATCTTTACAAAATGTTCCATATTAGGTTTTTTCATGAAAATCCTTTCACAAAAGTTGTTTATT
716 CTATCTTTACAAAATGTTCCATATTAGGTTTTTTCATGAAAATCCTTTCACAAAAGTTGTTTATT
25352187 ACACAACCAAGACTCATTTTCTTCCATAAAAATTCAGTAAACATCACAATTCCTTTCATGGAAAA
781 ACACAACCAAGACTCATTTTCTTCCATAAAAATTCAGTAAACATCACAATTCCTTTCATGGAAAA
25352252 TCCTT
846 TCCTT
25352257 TTGTTTTCTAATTAATTTCAATACATGAGGCAACGTATCGGTTTAATACTAAGTCAACGATTTCA
1 TTGTTTTCTAATTAATTTCAATACATGAGGCAACGTATCGGTTTAATACTAAGTCAACGATTTCA
25352322 TCGCTATGTTGGGTGAACATCAATCGACTCGTGTTAAAACAGTATGCCCTTCTAAAAAAACCAAA
66 TCGCTATGTTGGGTGAACATCAATCGACTCGTGTTAAAACAGTATGCCCTTCTAAAAAAACCAAA
25352387 AAAACACTAAAATTTCTCGTCTTTTCAACCGGATCACGATTAAATCCTACATTGAACCCGTATTT
131 AAAACACTAAAATTTCTCGTCTTTTCAACCGGATCACGATTAAATCCTACATTGAACCCGTATTT
25352452 TTGAAAATCAAGACAACGCGTGTTTTACAAGATACCAATTTTGGGCGTCGCGAGGGTGCTAATAC
196 TTGAAAATCAAGACAACGCGTGTTTTACAAGATACCAATTTTGGGCGTCGCGAGGGTGCTAATAC
25352517 CTTCCTCGCGCGTAACCGACTCCCGAACCCTACTTTTTCTCTGGATTTTGACGTAGACCTAAACT
261 CTTCCTCGCGCGTAACCGACTCCCGAACCCTACTTTTTCTCTGGATTTTGACGTAGACCTAAACT
25352582 CGGCCTTTTTTGTTTTAAAAATAAATTTATTAGGTGTCCGATCACACCTATAAAAAGGATCGGTG
326 CGGCCTTTTTTGTTTTAAAAATAAATTTATTAGGTGTCCGATCACACCTATAAAAAGGATCGGTG
25352647 GCGACTCCCTCTTTTTATTTCAAAATCAAACTTCAGTTTTCAAGTTTTCACTAAATCGCCACAAT
391 GCGACTCCCTCTTTTTATTTCAAAATCAAACTTCAGTTTTCAAGTTTTCACTAAATCGCCACAAT
25352712 TAGCGACCGAAAGCAAATTTTACGTCGCTACAATGATAAAAACCACTATTTTAATCATCATATTA
456 TAGCGACCGAAAGCAAATTTTACGTCGCTACAATGATAAAAACCACTATTTTAATCATCATATTA
25352777 ACCAATACATTTCATAATTTATACTTTGGCAAAATAACCATTTTGCCCTTAGACTTTACAAAAAT
521 ACCAATACATTTCATAATTTATACTTTGGCAAAATAACCATTTTGCCCTTAGACTTTACAAAAAT
25352842 TATGATTTTGCCCTTAGGCTCGTAAATCGATTTTTATCAATTTTTCACACTGTTCAAGCCTAGTC
586 TATGATTTTGCCCTTAGGCTCGTAAATCGATTTTTATCAATTTTTCACACTGTTCAAGCCTAGTC
25352907 AAATTCTTTTTATACTAGGAGCAGCCCACAATTCTCATTATTACTCATACTTATCACTCATTTTG
651 AAATTCTTTTTATACTAGGAGCAGCCCACAATTCTCATTATTACTCATACTTATCACTCATTTTG
25352972 CTATCTTTACAAAATGTTCCATATTAGGTTTTTTCATGAAAATCCTTTCACAAAAGTTGTTTATT
716 CTATCTTTACAAAATGTTCCATATTAGGTTTTTTCATGAAAATCCTTTCACAAAAGTTGTTTATT
25353037 ACACAACCAAGACTCATTTTCTTCCATAAAAATTCAGTAAACATCACAATTCCTTTCATGGAAAA
781 ACACAACCAAGACTCATTTTCTTCCATAAAAATTCAGTAAACATCACAATTCCTTTCATGGAAAA
25353102 TCCTT
846 TCCTT
25353107 AAACTATCAA
Statistics
Matches: 850, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
850 850 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (850 bp):
TTGTTTTCTAATTAATTTCAATACATGAGGCAACGTATCGGTTTAATACTAAGTCAACGATTTCA
TCGCTATGTTGGGTGAACATCAATCGACTCGTGTTAAAACAGTATGCCCTTCTAAAAAAACCAAA
AAAACACTAAAATTTCTCGTCTTTTCAACCGGATCACGATTAAATCCTACATTGAACCCGTATTT
TTGAAAATCAAGACAACGCGTGTTTTACAAGATACCAATTTTGGGCGTCGCGAGGGTGCTAATAC
CTTCCTCGCGCGTAACCGACTCCCGAACCCTACTTTTTCTCTGGATTTTGACGTAGACCTAAACT
CGGCCTTTTTTGTTTTAAAAATAAATTTATTAGGTGTCCGATCACACCTATAAAAAGGATCGGTG
GCGACTCCCTCTTTTTATTTCAAAATCAAACTTCAGTTTTCAAGTTTTCACTAAATCGCCACAAT
TAGCGACCGAAAGCAAATTTTACGTCGCTACAATGATAAAAACCACTATTTTAATCATCATATTA
ACCAATACATTTCATAATTTATACTTTGGCAAAATAACCATTTTGCCCTTAGACTTTACAAAAAT
TATGATTTTGCCCTTAGGCTCGTAAATCGATTTTTATCAATTTTTCACACTGTTCAAGCCTAGTC
AAATTCTTTTTATACTAGGAGCAGCCCACAATTCTCATTATTACTCATACTTATCACTCATTTTG
CTATCTTTACAAAATGTTCCATATTAGGTTTTTTCATGAAAATCCTTTCACAAAAGTTGTTTATT
ACACAACCAAGACTCATTTTCTTCCATAAAAATTCAGTAAACATCACAATTCCTTTCATGGAAAA
TCCTT
Found at i:25359106 original size:49 final size:49
Alignment explanation
Indices: 25359035--25359162 Score: 121
Period size: 49 Copynumber: 2.6 Consensus size: 49
25359025 AGATGCTGAC
* * * *
25359035 GCCATGTCTCAGACATGGTCTTACATTGACTTTTATATATCGAGGCCAAT
1 GCCATATCCCAGACA-GGTCTTACATTGACTCTCATATATCGAGGCCAAT
* * * * * ** * *
25359085 GTCGTATCCCAGACAGGTCTTACACTGGCTCTCATCTATCGCTGTCGAT
1 GCCATATCCCAGACAGGTCTTACATTGACTCTCATATATCGAGGCCAAT
*
25359134 GCCATGTCCCAGACAGGTCTTACATTGAC
1 GCCATATCCCAGACAGGTCTTACATTGAC
25359163 ACACAACAAG
Statistics
Matches: 60, Mismatches: 18, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
49 49 0.82
50 11 0.18
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (49 bp):
GCCATATCCCAGACAGGTCTTACATTGACTCTCATATATCGAGGCCAAT
Found at i:25365289 original size:38 final size:38
Alignment explanation
Indices: 25365221--25365299 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 38
25365211 TAAGTAAAAG
25365221 AACAAGTAAACAAATAAAATAAAAGGAATAAAT-AAATA
1 AACAAGTAAACAAATAAAATAAAA-GAATAAATAAAATA
* *
25365259 AACAAGTAAATAAATAAAGATAATAA-AATAATTAAAATA
1 AACAAGTAAACAAATAAA-ATAA-AAGAATAAATAAAATA
25365298 AA
1 AA
25365300 AAAGGCTTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
38 23 0.64
39 11 0.31
40 2 0.06
ACGTcount: A:0.71, C:0.04, G:0.06, T:0.19
Consensus pattern (38 bp):
AACAAGTAAACAAATAAAATAAAAGAATAAATAAAATA
Found at i:25366788 original size:44 final size:44
Alignment explanation
Indices: 25366725--25367086 Score: 228
Period size: 44 Copynumber: 8.2 Consensus size: 44
25366715 AACCTCAGGA
* * * *
25366725 AGATAAGACTTGTAACTTTAACCTACTCCACTGCAACTTCAAGG
1 AGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAAGG
* * * * *
25366769 AGATAAGGTTTGTGGCTTTAGTCTGCTCCGCTGCAACTT-TAGG
1 AGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAAGG
* * * * * *
25366812 AAGATGAGACTTGTAGCTTTAATCTGCTCTATTGCAAATTC-AGAA
1 -AGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAAG-G
* * * * *
25366857 AGATAAGTTTTGCTATCTTCAGTCTGCTCCACTACAACTTCAAGG
1 AGATAAGATTTG-TAGCTTTAATCTGCTCCACTGCAACTTCAAGG
* * * * * *
25366902 AGATAAGACTTGTAACTTCAACCTACTCCACTGTAACTTC-AGG
1 AGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAAGG
* * * *
25366945 AAGATATGGTTTGTAGCTTTAATCTGCTCTACTGCAACTTCAGGG
1 -AGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAAGG
* * *** * * * * *
25366990 AGATAAGATTTGCATCTTCGGTCTACTCTACTACAACTTGAGGG
1 AGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAAGG
* * * * * * *
25367034 AGATAAGACTTGCAACTTTAA-CATGTTCCACTGTAACTTTAGGG
1 AGATAAGATTTGTAGCTTTAATC-TGCTCCACTGCAACTTCAAGG
25367078 AGATAAGAT
1 AGATAAGAT
25367087 CCGCCGTGAT
Statistics
Matches: 240, Mismatches: 70, Indels: 16
0.74 0.21 0.05
Matches are distributed among these distances:
43 7 0.03
44 198 0.82
45 33 0.14
46 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (44 bp):
AGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAAGG
Found at i:25366994 original size:133 final size:131
Alignment explanation
Indices: 25366747--25367082 Score: 393
Period size: 133 Copynumber: 2.5 Consensus size: 131
25366737 TAACTTTAAC
* ** ** ** * *
25366747 CTACTCCACTGCAACTTCAAGGAGATAAGGTTTGTGGCTTTAGTCTGCTCCGCTGCAACTTTAGG
1 CTACTCCACTACAACTTCAAGGAGATAAGACTTGTAACTTTAACCTGCTCCACTGTAACTTTAGG
* *
25366812 AAGATGAGACTTGTAGCTTTAATCTGCTCTATTGCAAATTCAGAAAGATAAGTTTTGCTATCTTC
66 AAGAT-AGACTTGTAGCTTTAATCTGCTCTACTGCAAATTCAGAAAGATAAGATTTGC-ATCTTC
25366877 AGT
129 AGT
* * * *
25366880 CTGCTCCACTACAACTTCAAGGAGATAAGACTTGTAACTTCAACCTACTCCACTGTAACTTCAGG
1 CTACTCCACTACAACTTCAAGGAGATAAGACTTGTAACTTTAACCTGCTCCACTGTAACTTTAGG
** * ** *
25366945 AAGATATGGTTTGTAGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCATCTTCG
66 AAGATA-GACTTGTAGCTTTAATCTGCTCTACTGCAAATTCAGAAAGATAAGATTTGCATCTTCA
25367010 GT
130 GT
* * * * * *
25367012 CTACTCTACTACAACTTGAGGGAGATAAGACTTGCAACTTTAACATGTTCCACTGTAACTTTAGG
1 CTACTCCACTACAACTTCAAGGAGATAAGACTTGTAACTTTAACCTGCTCCACTGTAACTTTAGG
*
25367077 GAGATA
66 AAGATA
25367083 AGATCCGCCG
Statistics
Matches: 170, Mismatches: 32, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
132 69 0.41
133 101 0.59
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (131 bp):
CTACTCCACTACAACTTCAAGGAGATAAGACTTGTAACTTTAACCTGCTCCACTGTAACTTTAGG
AAGATAGACTTGTAGCTTTAATCTGCTCTACTGCAAATTCAGAAAGATAAGATTTGCATCTTCAG
T
Found at i:25367082 original size:132 final size:133
Alignment explanation
Indices: 25366822--25367082 Score: 362
Period size: 132 Copynumber: 2.0 Consensus size: 133
25366812 AAGATGAGAC
* * *
25366822 TTGTAGCTTTAATCTGCTCTATTGCAAATTCAGAAAGATAAGTTTTGCTATCTTCAGTCTGCTCC
1 TTGTAGCTTTAATCTGCTCTACTGCAAATTCAGAAAGATAAGATTTGCTATCTTCAGTCTACTCC
* *
25366887 ACTACAACTTCAAGGAGATAAGACTTGTAACTTCAACCTACTCCACTGTAACTTCAGGAAGATAT
66 ACTACAACTTCAAGGAGATAAGACTTGCAACTTCAACATACTCCACTGTAACTTCAGGAAGATAT
25366952 GGT
131 GGT
* ** * *
25366955 TTGTAGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGC-ATCTTCGGTCTACTCT
1 TTGTAGCTTTAATCTGCTCTACTGCAAATTCAGAAAGATAAGATTTGCTATCTTCAGTCTACTCC
* * * ** * *
25367019 ACTACAACTTGAGGGAGATAAGACTTGCAACTTTAACATGTTCCACTGTAACTTTAGGGAGATA
66 ACTACAACTTCAAGGAGATAAGACTTGCAACTTCAACATACTCCACTGTAACTTCAGGAAGATA
25367083 AGATCCGCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
132 68 0.61
133 43 0.39
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (133 bp):
TTGTAGCTTTAATCTGCTCTACTGCAAATTCAGAAAGATAAGATTTGCTATCTTCAGTCTACTCC
ACTACAACTTCAAGGAGATAAGACTTGCAACTTCAACATACTCCACTGTAACTTCAGGAAGATAT
GGT
Found at i:25372030 original size:16 final size:16
Alignment explanation
Indices: 25372009--25372047 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
25371999 GATCATTGGT
25372009 TCCCATTTGATCTCCC
1 TCCCATTTGATCTCCC
25372025 TCCCATTTGATCTCCC
1 TCCCATTTGATCTCCC
25372041 TCCCATT
1 TCCCATT
25372048 CAACCATGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.13, C:0.44, G:0.05, T:0.38
Consensus pattern (16 bp):
TCCCATTTGATCTCCC
Found at i:25374333 original size:16 final size:16
Alignment explanation
Indices: 25374312--25374350 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
25374302 GATCATTGGT
25374312 TCCCATTTGATCTCCC
1 TCCCATTTGATCTCCC
25374328 TCCCATTTGATCTCCC
1 TCCCATTTGATCTCCC
25374344 TCCCATT
1 TCCCATT
25374351 CAACCATGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.13, C:0.44, G:0.05, T:0.38
Consensus pattern (16 bp):
TCCCATTTGATCTCCC
Found at i:25383837 original size:55 final size:55
Alignment explanation
Indices: 25383778--25383907 Score: 145
Period size: 55 Copynumber: 2.4 Consensus size: 55
25383768 CCCGTGGAAA
* ** * * *
25383778 TTTGATAGGTTCGACCATGGGTGTTCGACACGGGCGTGGCGCACGCCCGTGCTGT
1 TTTGACAGGTTCGACCATGGGTCCTCCACACGGGCGTGGCACACACCCGTGCTGT
* * *
25383833 TTTGACAGGTTC-ATCCATGGTTCCTCCACACGGGCGTGTCACACACCCGTGTTGT
1 TTTGACAGGTTCGA-CCATGGGTCCTCCACACGGGCGTGGCACACACCCGTGCTGT
* *
25383888 TTTGGCAGGCTCGACCATGG
1 TTTGACAGGTTCGACCATGG
25383908 CCATGTCACA
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
54 1 0.02
55 60 0.97
56 1 0.02
ACGTcount: A:0.15, C:0.28, G:0.31, T:0.27
Consensus pattern (55 bp):
TTTGACAGGTTCGACCATGGGTCCTCCACACGGGCGTGGCACACACCCGTGCTGT
Found at i:25387624 original size:14 final size:15
Alignment explanation
Indices: 25387600--25387629 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
25387590 GGATATCAAA
25387600 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
25387615 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
25387629 A
1 A
25387630 AGTTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:25392900 original size:17 final size:19
Alignment explanation
Indices: 25392873--25392910 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
25392863 ATGTAAAACC
25392873 TATGAGTATGAAC-TTTGG
1 TATGAGTATGAACTTTTGG
25392891 TATGAG-ATGAACTTTTGG
1 TATGAGTATGAACTTTTGG
25392909 TA
1 TA
25392911 AGAATGCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.29, C:0.05, G:0.26, T:0.39
Consensus pattern (19 bp):
TATGAGTATGAACTTTTGG
Found at i:25396758 original size:14 final size:14
Alignment explanation
Indices: 25396739--25396768 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
25396729 AGAGTTTGTT
25396739 ATTTATAGCGATGC
1 ATTTATAGCGATGC
25396753 ATTTATAGCGATGC
1 ATTTATAGCGATGC
25396767 AT
1 AT
25396769 CACTTAATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (14 bp):
ATTTATAGCGATGC
Found at i:25397375 original size:77 final size:77
Alignment explanation
Indices: 25397261--25397421 Score: 250
Period size: 77 Copynumber: 2.1 Consensus size: 77
25397251 TTGGTTAGTG
* *
25397261 ATTCAGATTTTCATGTCGGACCAAATGATTGTTTGATGTTCTGAGGTAGAGTTTGTGTACCAAAG
1 ATTCAGATTTTCATGTCAGACCAAATGACTGTTTGATGTTCTGAGGTAGAGTTTGTGTACCAAAG
*
25397326 AATTATGAACTT
66 AATGATGAACTT
** ** *
25397338 ATTCAGATTTTCATGTCAGACCTGATGACTGTTTGATGTTCTGAGGTAGAGTTTGTGTACTGAAT
1 ATTCAGATTTTCATGTCAGACCAAATGACTGTTTGATGTTCTGAGGTAGAGTTTGTGTACCAAAG
25397403 AATGATGAACTT
66 AATGATGAACTT
25397415 ATTCAGA
1 ATTCAGA
25397422 AAATTCTTCA
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
77 76 1.00
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (77 bp):
ATTCAGATTTTCATGTCAGACCAAATGACTGTTTGATGTTCTGAGGTAGAGTTTGTGTACCAAAG
AATGATGAACTT
Found at i:25407670 original size:94 final size:94
Alignment explanation
Indices: 25407509--25407978 Score: 904
Period size: 94 Copynumber: 5.0 Consensus size: 94
25407499 AATGTGATCG
* *
25407509 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
25407574 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
25407603 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
25407668 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
25407697 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
25407762 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
25407791 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
25407856 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
25407885 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
25407950 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
25407979 GAATGTCGAT
Statistics
Matches: 372, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 372 1.00
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.40
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:25408039 original size:24 final size:24
Alignment explanation
Indices: 25408007--25408070 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
25407997 GAAAATTTCA
* *
25408007 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGAGCTTAAT-T
25408031 GGCACTATGTGTGCGAGCTTAATT
1 GGCACTATGTGTGCGAGCTTAATT
*
25408055 AGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
25408071 ATTTGGTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGCTTAATT
Found at i:25415058 original size:39 final size:39
Alignment explanation
Indices: 25415013--25415147 Score: 126
Period size: 39 Copynumber: 3.3 Consensus size: 39
25415003 GGTCATTAAC
*
25415013 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATTTTTCCAGCACATAGCCTGCGGACCTCAAGT
* * * * *
25415052 CTGGATATATTTCTAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCACATAGCCTGCGGACCTCAAGT
* * *
25415091 CCGGATATTTTCAAATTTTCTAGCATATAGCCTGCGGACCTCATGT
1 CCGGATA---T----TTTTCCAGCACATAGCCTGCGGACCTCAAGT
25415137 CCGGATATTTT
1 CCGGATATTTT
25415148 CAATCTCATA
Statistics
Matches: 81, Mismatches: 8, Indels: 14
0.79 0.08 0.14
Matches are distributed among these distances:
39 42 0.52
42 1 0.01
43 1 0.01
46 37 0.46
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCACATAGCCTGCGGACCTCAAGT
Found at i:25415128 original size:46 final size:46
Alignment explanation
Indices: 25415061--25415150 Score: 180
Period size: 46 Copynumber: 2.0 Consensus size: 46
25415051 TCTGGATATA
25415061 TTTCTAGCATATAGCCTGCGGACCTCATGTCCGGATATTTTCAAAT
1 TTTCTAGCATATAGCCTGCGGACCTCATGTCCGGATATTTTCAAAT
25415107 TTTCTAGCATATAGCCTGCGGACCTCATGTCCGGATATTTTCAA
1 TTTCTAGCATATAGCCTGCGGACCTCATGTCCGGATATTTTCAA
25415151 TCTCATACAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.34
Consensus pattern (46 bp):
TTTCTAGCATATAGCCTGCGGACCTCATGTCCGGATATTTTCAAAT
Found at i:25422301 original size:15 final size:15
Alignment explanation
Indices: 25422278--25422326 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
25422268 ACGGAGAAGC
*
25422278 CCAAAATAAAGAAAT
1 CCAAGATAAAGAAAT
*
25422293 CGAAGATAAAGAAAT
1 CCAAGATAAAGAAAT
* *
25422308 CCATGATAAGGAAAT
1 CCAAGATAAAGAAAT
25422323 CCAA
1 CCAA
25422327 ATTACAATAC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.14
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:25435306 original size:19 final size:19
Alignment explanation
Indices: 25435282--25435320 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
25435272 TGAGACAGGG
*
25435282 GACACGCCCATGTGCTCTA
1 GACACGCCCATGTCCTCTA
* *
25435301 GACACGTCCGTGTCCTCTA
1 GACACGCCCATGTCCTCTA
25435320 G
1 G
25435321 CCATGTAACT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.18, C:0.36, G:0.23, T:0.23
Consensus pattern (19 bp):
GACACGCCCATGTCCTCTA
Found at i:25436770 original size:43 final size:43
Alignment explanation
Indices: 25436735--25436839 Score: 174
Period size: 43 Copynumber: 2.4 Consensus size: 43
25436725 AACTTGGACT
* * *
25436735 ACTCAATGATCTCAGATGCTTACATCCATAATGAACTCAAACC
1 ACTCAATGAGCTCGGATGCTTACATCCATAATGAACTCGAACC
*
25436778 ACTCAACGAGCTCGGATGCTTACATCCATAATGAACTCGAACC
1 ACTCAATGAGCTCGGATGCTTACATCCATAATGAACTCGAACC
25436821 ACTCAATGAGCTCGGATGC
1 ACTCAATGAGCTCGGATGC
25436840 CACATATATA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.33, C:0.29, G:0.15, T:0.23
Consensus pattern (43 bp):
ACTCAATGAGCTCGGATGCTTACATCCATAATGAACTCGAACC
Found at i:25453435 original size:22 final size:21
Alignment explanation
Indices: 25453391--25453432 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
25453381 TTCAATTTAC
25453391 ACAAAAAGTAGCGATACCTTT
1 ACAAAAAGTAGCGATACCTTT
**
25453412 ACAAAAAGTATTGATACCTTT
1 ACAAAAAGTAGCGATACCTTT
25453433 TACCAGGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.29
Consensus pattern (21 bp):
ACAAAAAGTAGCGATACCTTT
Found at i:25474726 original size:29 final size:29
Alignment explanation
Indices: 25474660--25474770 Score: 102
Period size: 29 Copynumber: 3.9 Consensus size: 29
25474650 AATTTCACAT
* * *
25474660 ACCTGTATCTGACGCATTAAGCCC-AATC
1 ACCTGTATATGGCCCATTAAGCCCAAATC
25474688 A--TGTTCATATGGCCCATTAAGCCCAAATC
1 ACCTG-T-ATATGGCCCATTAAGCCCAAATC
* *
25474717 ACCTGTATATGGCCCACTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATC
* * * *
25474746 ACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCA
25474771 GTCACATTCA
Statistics
Matches: 69, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
26 2 0.03
27 1 0.01
28 16 0.23
29 47 0.68
30 1 0.01
31 2 0.03
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (29 bp):
ACCTGTATATGGCCCATTAAGCCCAAATC
Found at i:25481698 original size:28 final size:28
Alignment explanation
Indices: 25481630--25481811 Score: 267
Period size: 28 Copynumber: 6.5 Consensus size: 28
25481620 CATGAGATTG
* * * *
25481630 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
25481659 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
25481687 GCACTAAGTGTGCGAGTATGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
25481715 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
25481743 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
25481771 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
25481798 ACACTGAGTGTGCG
1 GCACTAAGTGTGCG
25481812 GACTTAATAT
Statistics
Matches: 141, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
27 23 0.16
28 100 0.71
29 18 0.13
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:25501354 original size:46 final size:46
Alignment explanation
Indices: 25501304--25501479 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
25501294 TGGTTGAGCA
25501304 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
25501350 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
25501395 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
25501443 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
25501480 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:25501460 original size:93 final size:93
Alignment explanation
Indices: 25501301--25501472 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
25501291 GGATGGTTGA
* *
25501301 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
25501366 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
25501394 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
25501459 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
25501473 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:25513487 original size:5 final size:5
Alignment explanation
Indices: 25513477--25513502 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
25513467 TTTATACTTT
25513477 TTTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC TTTTC TTTTC TTTTC TTTTC T
25513503 CCTCTTTTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTC
Found at i:25513508 original size:15 final size:15
Alignment explanation
Indices: 25513477--25513511 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
25513467 TTTATACTTT
**
25513477 TTTTCTTTTCTTTTC
1 TTTTCTTTTCTCCTC
25513492 TTTTCTTTTCTCCTC
1 TTTTCTTTTCTCCTC
25513507 TTTTC
1 TTTTC
25513512 CCTTTTTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTCTTTTCTCCTC
Found at i:25528211 original size:26 final size:26
Alignment explanation
Indices: 25528175--25528228 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
25528165 TCTGTGGCAG
25528175 AGTATGAACACAAATTTGTAAGACTC
1 AGTATGAACACAAATTTGTAAGACTC
25528201 AGTATGAACACAAATTTGTAAGACTC
1 AGTATGAACACAAATTTGTAAGACTC
25528227 AG
1 AG
25528229 CAAGTATGCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.26
Consensus pattern (26 bp):
AGTATGAACACAAATTTGTAAGACTC
Found at i:25543668 original size:170 final size:170
Alignment explanation
Indices: 25543386--25543726 Score: 682
Period size: 170 Copynumber: 2.0 Consensus size: 170
25543376 AATGCATGAA
25543386 CATGGTTACCAAGCTTATACACATTCGGCAATAGCATATATAAATTCATATTTTTCATTTCAGCA
1 CATGGTTACCAAGCTTATACACATTCGGCAATAGCATATATAAATTCATATTTTTCATTTCAGCA
25543451 TATATACTTAACATTTAATTAAGATTAAGTACGTCTATTTGCTTATAAACTTACCTCGGACGATA
66 TATATACTTAACATTTAATTAAGATTAAGTACGTCTATTTGCTTATAAACTTACCTCGGACGATA
25543516 TAAAATGGAACGAGACAACTAGTCGACAACTTTCGTTTCC
131 TAAAATGGAACGAGACAACTAGTCGACAACTTTCGTTTCC
25543556 CATGGTTACCAAGCTTATACACATTCGGCAATAGCATATATAAATTCATATTTTTCATTTCAGCA
1 CATGGTTACCAAGCTTATACACATTCGGCAATAGCATATATAAATTCATATTTTTCATTTCAGCA
25543621 TATATACTTAACATTTAATTAAGATTAAGTACGTCTATTTGCTTATAAACTTACCTCGGACGATA
66 TATATACTTAACATTTAATTAAGATTAAGTACGTCTATTTGCTTATAAACTTACCTCGGACGATA
25543686 TAAAATGGAACGAGACAACTAGTCGACAACTTTCGTTTCC
131 TAAAATGGAACGAGACAACTAGTCGACAACTTTCGTTTCC
25543726 C
1 C
25543727 CCCGATCCAA
Statistics
Matches: 171, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
170 171 1.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (170 bp):
CATGGTTACCAAGCTTATACACATTCGGCAATAGCATATATAAATTCATATTTTTCATTTCAGCA
TATATACTTAACATTTAATTAAGATTAAGTACGTCTATTTGCTTATAAACTTACCTCGGACGATA
TAAAATGGAACGAGACAACTAGTCGACAACTTTCGTTTCC
Found at i:25548038 original size:28 final size:27
Alignment explanation
Indices: 25547987--25548077 Score: 112
Period size: 28 Copynumber: 3.3 Consensus size: 27
25547977 CAGCATGGCT
** *
25547987 ACCAGAACAGAT-ATTGTGATAGAGTC
1 ACCAGAACAGATAATTGTGGCAGAGCC
25548013 ACCAGATACAGATAATTGTGGCAGAGCC
1 ACCAGA-ACAGATAATTGTGGCAGAGCC
*
25548041 ACCAGAAACAGATATTTGTGGCAGAGCC
1 ACCAG-AACAGATAATTGTGGCAGAGCC
*
25548069 ACCAAAACA
1 ACCAGAACA
25548078 CTTCCTCCAT
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.11
27 10 0.18
28 40 0.70
29 1 0.02
ACGTcount: A:0.40, C:0.21, G:0.22, T:0.18
Consensus pattern (27 bp):
ACCAGAACAGATAATTGTGGCAGAGCC
Found at i:25549084 original size:18 final size:18
Alignment explanation
Indices: 25549028--25549084 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
25549018 GACTATAGAG
25549028 GAAAAGAAGAAGAAGAGAA
1 GAAAAGAAGAAG-AGAGAA
* * *
25549047 -AATAGATGAAGAGAGGA
1 GAAAAGAAGAAGAGAGAA
*
25549064 GAAAAGAAGAAGAGAAAA
1 GAAAAGAAGAAGAGAGAA
25549082 GAA
1 GAA
25549085 TTGTCAAAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
17 5 0.17
18 25 0.83
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.04
Consensus pattern (18 bp):
GAAAAGAAGAAGAGAGAA
Found at i:25550436 original size:51 final size:49
Alignment explanation
Indices: 25550368--25550504 Score: 166
Period size: 49 Copynumber: 2.8 Consensus size: 49
25550358 TGTGAGGTCG
* *
25550368 CATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGAAAACTGTGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAA-T-TGATCA
* * * ** *
25550419 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGACTATTGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAATTGATCA
**
25550468 CATGTGTAGTACTAAAAGCAGGCTACTATGCGTACCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
25550505 AGCTAACTTC
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
49 37 0.51
50 1 0.01
51 35 0.48
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAATTGATCA
Found at i:25565123 original size:49 final size:53
Alignment explanation
Indices: 25565004--25565153 Score: 175
Period size: 49 Copynumber: 2.9 Consensus size: 53
25564994 ATTAGGGTTT
*
25565004 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAA-G
* *
25565058 CAAGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAA-GTTTC-AA-
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAG
* * * * *
25565108 AAGGATACCACGTAAGACCATGACAAGTCATAGCAA-TAGTAAGGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTT
25565154 CCCGTGTATC
Statistics
Matches: 85, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
49 36 0.42
50 3 0.04
52 2 0.02
53 5 0.06
54 6 0.07
55 33 0.39
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAG
Found at i:25567099 original size:49 final size:53
Alignment explanation
Indices: 25566980--25567129 Score: 175
Period size: 49 Copynumber: 2.9 Consensus size: 53
25566970 ATTAGGGTTT
*
25566980 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAA-G
* *
25567034 CAAGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAA-GTTTC-AA-
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAG
* * * * *
25567084 AAGGATACCACGTAAGACCATGACAAGTCATAGCAA-TAGTAAGGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTT
25567130 CCCGTGTATC
Statistics
Matches: 85, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
49 36 0.42
50 3 0.04
52 2 0.02
53 5 0.06
54 6 0.07
55 33 0.39
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAG
Found at i:25575077 original size:81 final size:81
Alignment explanation
Indices: 25574942--25575104 Score: 299
Period size: 81 Copynumber: 2.0 Consensus size: 81
25574932 TCGAACCGCA
*
25574942 TCCGTAACAGGCCCTGTTAATAGACTTACCCCAACATTCACCTAGGTGTCGTCTTCCGCATTGGG
1 TCCGTAACAGGCCCTGTTAATAGACTTACCCCAACATTCACCTAGGTGTCGTCTTCCACATTGGG
25575007 GACATTCAGGTTTCTC
66 GACATTCAGGTTTCTC
*
25575023 TCCGTAACAGGCCCTGTTAGTAGACTTACCCCAACATTCACCTAGGTGTCGTCTTCCACATTGGG
1 TCCGTAACAGGCCCTGTTAATAGACTTACCCCAACATTCACCTAGGTGTCGTCTTCCACATTGGG
*
25575088 GGCATTCAGGTTTCTC
66 GACATTCAGGTTTCTC
25575104 T
1 T
25575105 TGACGATTAT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.30
Consensus pattern (81 bp):
TCCGTAACAGGCCCTGTTAATAGACTTACCCCAACATTCACCTAGGTGTCGTCTTCCACATTGGG
GACATTCAGGTTTCTC
Found at i:25577225 original size:28 final size:29
Alignment explanation
Indices: 25577191--25577263 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
25577181 GTATAATAAG
25577191 CCCGCACACTTAGTGCT-TA-ATAGTCGAA
1 CCCGCACACTTAGTGCTATACA-AGTCGAA
* * *
25577219 CTCGCACACTTAGTGCTATACAATTTGAA
1 CCCGCACACTTAGTGCTATACAAGTCGAA
25577248 CCCGCACACTTAGTGC
1 CCCGCACACTTAGTGC
25577264 CAATCTCATG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
28 16 0.41
29 22 0.56
30 1 0.03
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
CCCGCACACTTAGTGCTATACAAGTCGAA
Found at i:25580464 original size:16 final size:16
Alignment explanation
Indices: 25580445--25580475 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25580435 CTTCTTCACT
25580445 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
25580461 TACTTACTTACTTAA
1 TACTCACTTACTTAA
25580476 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:25580481 original size:20 final size:20
Alignment explanation
Indices: 25580442--25580481 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
25580432 AAACTTCTTC
* *
25580442 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
25580462 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
25580482 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:25580857 original size:55 final size:54
Alignment explanation
Indices: 25580667--25580921 Score: 249
Period size: 55 Copynumber: 4.8 Consensus size: 54
25580657 ACACAGGTAC
* * * * *
25580667 CTTACCATTGCCATGACTTGTCATGGCCTTACGTGGTATCCTT---T-T-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTATAGAAA
* **
25580716 CTTACCATTGCCATGTGTTGACATGGTCTTACATGGTATCCTTGCCT-TATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTATA-GAAA
* * * *
25580769 CTCACAAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTCATAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCT-ATAGAAA
* * * *
25580824 CTTATCAATGCCATGTCTTGATATGGTCTTACATGATATCCTTGCCT-TAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTATAGAAA
*
25580877 CTTTACCAATTGCCATGCCTTGCCATGGTCTTACATGGTATCCTT
1 C-TTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
25580922 AAACCCTAAT
Statistics
Matches: 169, Mismatches: 25, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
49 38 0.22
52 4 0.02
53 46 0.27
54 8 0.05
55 71 0.42
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTATAGAAA
Found at i:25580858 original size:108 final size:110
Alignment explanation
Indices: 25580712--25580914 Score: 304
Period size: 108 Copynumber: 1.9 Consensus size: 110
25580702 GTATCCTTTT
* * *
25580712 GAAACTTACCATTGCCATGTGTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AAC-TCA-C
1 GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACTTCACC
*
25580774 AAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTCATA
65 AAATGCCATGCCTTGCCATGGTCTTACATGGGACCTTTGCCTCATA
* * *
25580820 GAAACTTATCAATGCCATGTCTTGATATGGTCTTACATGATATCCTTGCCTTAGAAACTTTACCA
1 GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACTTCACCA
*
25580885 ATTGCCATGCCTTGCCATGGTCTTACATGG
66 AATGCCATGCCTTGCCATGGTCTTACATGG
25580915 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 1 0.01
108 51 0.61
109 2 0.02
110 30 0.36
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (110 bp):
GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACTTCACCA
AATGCCATGCCTTGCCATGGTCTTACATGGGACCTTTGCCTCATA
Found at i:25587327 original size:16 final size:16
Alignment explanation
Indices: 25587306--25587336 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25587296 ATAAATTTGA
25587306 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
25587322 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
25587337 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:25590858 original size:46 final size:46
Alignment explanation
Indices: 25590808--25590980 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
25590798 TGGTTGAGCA
25590808 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
25590854 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
25590899 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
25590947 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
25590981 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:25590964 original size:93 final size:93
Alignment explanation
Indices: 25590805--25590975 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
25590795 GGATGGTTGA
* *
25590805 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
25590870 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
25590898 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
25590963 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
25590976 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:25602904 original size:21 final size:22
Alignment explanation
Indices: 25602865--25602905 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
25602855 GTTGAATTGT
25602865 CACACGGGCGTGTTGCCCCTCC
1 CACACGGGCGTGTTGCCCCTCC
*
25602887 CACATGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
25602906 GTGTTAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTCC
Found at i:25604423 original size:43 final size:43
Alignment explanation
Indices: 25604275--25604433 Score: 189
Period size: 43 Copynumber: 3.7 Consensus size: 43
25604265 TATGTGCTAT
*
25604275 CGTGTAAGACCACGTCTGGGACATTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGA-TTA
* ** *
25604319 CGTGTAAGACCATGTCTGGGATGTTGGCATCG-TATTTGATTT
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
* *
25604361 CGTGTAAGACC-CTGGCTGGGACAATGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTA
* *
25604404 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
25604434 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 15, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
42 29 0.30
43 37 0.39
44 30 0.31
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
Found at i:25605568 original size:46 final size:47
Alignment explanation
Indices: 25605462--25605583 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
25605452 TGTCTTCGAC
** * *
25605462 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
25605512 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
25605558 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
25605584 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:25608712 original size:21 final size:22
Alignment explanation
Indices: 25608683--25608725 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
25608673 GTATACTTTG
25608683 AAAAATAT-CA-ATTTTTTTAT
1 AAAAATATCCATATTTTTTTAT
25608703 AAAAACTATCCATATTTTTTTAT
1 AAAAA-TATCCATATTTTTTTAT
25608726 TATTTATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 3 0.15
22 2 0.10
23 10 0.50
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (22 bp):
AAAAATATCCATATTTTTTTAT
Found at i:25611441 original size:47 final size:47
Alignment explanation
Indices: 25611372--25611592 Score: 183
Period size: 47 Copynumber: 4.7 Consensus size: 47
25611362 GGGGTAAGGG
* * *
25611372 GTCGATGCCGTGTCCCAGACATGGTCTTACACTGGCTTATATCTC-AA
1 GTCGAAGCCATGTCCCAGACATGGTCTTACACTGAC-TATATCTCGAA
* *
25611419 GTCGAAGCCATGTCCCAGACATGGTCTTACACTGACTATCGTCTCGTA
1 GTCGAAGCCATGTCCCAGACATGGTCTTACACTGACTAT-ATCTCGAA
* * *
25611467 G-CCAA-CGCATGTCCCAGACAT-GTCTTACACTGACTTATGTCATCGAG
1 GTCGAAGC-CATGTCCCAGACATGGTCTTACACTGAC-TATATC-TCGAA
* *
25611514 GCCGATA--CATGTCCCAGACAT-GTCTTACACTAGAACT-CATCTC-AA
1 GTCGA-AGCCATGTCCCAGACATGGTCTTACACT-G-ACTATATCTCGAA
*
25611559 -TGCTAATGCCATGTCCCAGACATGGTCTTACACT
1 GT-CGAA-GCCATGTCCCAGACATGGTCTTACACT
25611593 AGCTCTCACA
Statistics
Matches: 146, Mismatches: 14, Indels: 27
0.78 0.07 0.14
Matches are distributed among these distances:
44 1 0.01
45 3 0.02
46 22 0.15
47 101 0.69
48 16 0.11
49 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
GTCGAAGCCATGTCCCAGACATGGTCTTACACTGACTATATCTCGAA
Found at i:25611572 original size:94 final size:94
Alignment explanation
Indices: 25611376--25611592 Score: 241
Period size: 94 Copynumber: 2.3 Consensus size: 94
25611366 TAAGGGGTCG
* * *
25611376 ATGCCGTGTCCCAGACATGGTCTTACACTGGCTTATATCTCAAGTCGAAGCCATGTCCCAGACAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTTATATCTCAAGCCGAA-CCATGTCCCAGACAT
**
25611441 GGTCTTACACTGACTATCGTCTCGTAGCCA
65 GGTCTTACACTGACTATCGTCTAATAGCCA
* * *
25611471 ACG-CATGTCCCAGACAT-GTCTTACACTGACTTATGTCATCGAGGCCGATA-CATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTTATATC-TC-AAGCCGA-ACCATGTCCCAGAC
*
25611533 AT-GTCTTACACTAGAACTCATC-TC-AAT-GCTA
63 ATGGTCTTACACT-G-ACT-ATCGTCTAATAGCCA
25611564 ATGCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
25611593 AGCTCTCACA
Statistics
Matches: 104, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
93 33 0.32
94 45 0.43
95 22 0.21
96 4 0.04
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (94 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACTTATATCTCAAGCCGAACCATGTCCCAGACATG
GTCTTACACTGACTATCGTCTAATAGCCA
Found at i:25619855 original size:28 final size:28
Alignment explanation
Indices: 25619815--25619869 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
25619805 TACTGCTGGG
25619815 TATTTATAAGGTCTTATTTTGACTACCA
1 TATTTATAAGGTCTTATTTTGACTACCA
25619843 TATTTATAAGGTCTTATTTTGACTACC
1 TATTTATAAGGTCTTATTTTGACTACC
25619870 TTACTCTCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.27, C:0.15, G:0.11, T:0.47
Consensus pattern (28 bp):
TATTTATAAGGTCTTATTTTGACTACCA
Found at i:25621254 original size:21 final size:21
Alignment explanation
Indices: 25621230--25621294 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
25621220 ACCAGAAACC
25621230 CATAAGGGTTGAACGAAAGCT
1 CATAAGGGTTGAACGAAAGCT
* * *
25621251 CATAAGAGCTGAACAGAAA-CC
1 CATAAGGGTTGAAC-GAAAGCT
*
25621272 CATAAGGGTTAAAC-AGAAGCT
1 CATAAGGGTTGAACGA-AAGCT
25621293 CA
1 CA
25621295 ATAAAGCCGA
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
19 1 0.03
20 2 0.06
21 27 0.79
22 4 0.12
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.15
Consensus pattern (21 bp):
CATAAGGGTTGAACGAAAGCT
Found at i:25621259 original size:42 final size:42
Alignment explanation
Indices: 25621202--25621352 Score: 148
Period size: 42 Copynumber: 3.6 Consensus size: 42
25621192 GAGGCTGAAT
* * *
25621202 AGAAGCTTATGAGAGCT-AACCAGAAACCCATAAGGGTTGAAC
1 AGAAGCTCATAAGAGCTGAA-CAGAAACCCATAAGGGTTAAAC
25621244 -GAAAGCTCATAAGAGCTGAACAGAAACCCATAAGGGTTAAAC
1 AG-AAGCTCATAAGAGCTGAACAGAAACCCATAAGGGTTAAAC
* * * * *
25621286 AGAAGCTCAATAA-AGCCGAATAGAAACTCATATGAGTTAAAC
1 AGAAGCTC-ATAAGAGCTGAACAGAAACCCATAAGGGTTAAAC
* * *
25621328 AGAAGCTCGTGAGAGCTAAAC-GAAA
1 AGAAGCTCATAAGAGCTGAACAGAAA
25621353 AGTAAGCACG
Statistics
Matches: 91, Mismatches: 13, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
41 7 0.08
42 77 0.85
43 7 0.08
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.16
Consensus pattern (42 bp):
AGAAGCTCATAAGAGCTGAACAGAAACCCATAAGGGTTAAAC
Found at i:25623237 original size:40 final size:39
Alignment explanation
Indices: 25623193--25623297 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
25623183 AGTGACCATA
*
25623193 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
25623233 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
25623271 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
25623298 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:25623254 original size:39 final size:40
Alignment explanation
Indices: 25623153--25623316 Score: 169
Period size: 40 Copynumber: 4.1 Consensus size: 40
25623143 TTGAATGATG
* *
25623153 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATA
*
25623193 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA
*
25623232 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* * **
25623272 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATA-CTATA
25623312 TCCGG
1 TCCGG
25623317 TTAAATTCCG
Statistics
Matches: 106, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
39 36 0.34
40 59 0.56
41 10 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
Found at i:25623316 original size:79 final size:80
Alignment explanation
Indices: 25623153--25623303 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 80
25623143 TTGAATGATG
*
25623153 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
25623218 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * *
25623233 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
25623295 TTGAACGAG
64 TTGAACGAG
25623304 TAGCTATATC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.69
80 18 0.30
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:25631154 original size:40 final size:40
Alignment explanation
Indices: 25631065--25631328 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
25631055 TTGAATGATG
* *
25631065 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
25631104 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
25631144 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
25631183 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
25631223 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
25631263 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
25631304 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
25631329 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 53 0.26
40 143 0.69
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:25631346 original size:120 final size:118
Alignment explanation
Indices: 25631065--25631361 Score: 338
Period size: 119 Copynumber: 2.5 Consensus size: 118
25631055 TTGAATGATG
* *
25631065 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
25631125 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
25631183 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
25631248 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
25631304 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
25631362 TACGTGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
118 23 0.15
119 64 0.42
120 64 0.42
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:25636713 original size:22 final size:22
Alignment explanation
Indices: 25636688--25636730 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
25636678 TTTCATTGTT
25636688 TTGCTA-TCATTTCGTTATTATA
1 TTGCTACT-ATTTCGTTATTATA
*
25636710 TTGCTACTATTTTGTTATTAT
1 TTGCTACTATTTCGTTATTAT
25636731 TATTTGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (22 bp):
TTGCTACTATTTCGTTATTATA
Found at i:25643472 original size:45 final size:44
Alignment explanation
Indices: 25643364--25643759 Score: 219
Period size: 44 Copynumber: 8.8 Consensus size: 44
25643354 CTACCATGGT
** * * ** *
25643364 GAATCTTATCTCCCTGAAGTTATAGTGGAGTAGATCGAAGCCAT
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
* * *
25643408 TAACCTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGATAGC
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C
* * *
25643453 GAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAATTAC
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G--A-AGA-TAC
* ** * * * * *
25643504 AAATCAAATCCCCCTAAAGTAGTAGTAGAGCAGATTGAA-ATTA-
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA-TAC
* * * ** *
25643547 -TATCTTATCTCCCTGAAGTTACAGTGGA-CTAGATCGGGGATAGT
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGC-AGATTGAAGATA-C
** * * * * * *
25643591 GAATCTTATCTCTTTGAAGCTGCCGTAGAGTAGATTAAAG-TAA
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
* * *
25643634 TAAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC
1 GAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
* * *
25643679 -AAGTCTTATCTCCCTGAAGTTACAGTGGAGCACATTGAAGATAGA
1 GAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C
* * * *
25643724 GAATCTTATTTCCCTGAAGTCGTAGTGGAACAGATT
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
25643760 AAAGCTACAA
Statistics
Matches: 262, Mismatches: 72, Indels: 35
0.71 0.20 0.09
Matches are distributed among these distances:
41 1 0.00
42 26 0.10
43 3 0.01
44 108 0.41
45 87 0.33
46 3 0.01
48 2 0.01
50 1 0.00
51 29 0.11
52 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (44 bp):
GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
Found at i:25655395 original size:78 final size:78
Alignment explanation
Indices: 25655266--25655421 Score: 294
Period size: 78 Copynumber: 2.0 Consensus size: 78
25655256 TACTAAGTCC
*
25655266 AGGCTACTATGCGTACCAGATAGCTTCGGCTACAAGTGTGGAAATGGGAAAATGTGCAGGCAATT
1 AGGCTACTATGCGTACCAGATAGCTTCAGCTACAAGTGTGGAAATGGGAAAATGTGCAGGCAATT
25655331 GTGTATCTGTTAT
66 GTGTATCTGTTAT
*
25655344 AGGCTACTATGCGTACCAGATAGCTTCATCTACAAGTGTGGAAATGGGAAAATGTGCAGGCAATT
1 AGGCTACTATGCGTACCAGATAGCTTCAGCTACAAGTGTGGAAATGGGAAAATGTGCAGGCAATT
25655409 GTGTATCTGTTAT
66 GTGTATCTGTTAT
25655422 TATTCCGACG
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 76 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (78 bp):
AGGCTACTATGCGTACCAGATAGCTTCAGCTACAAGTGTGGAAATGGGAAAATGTGCAGGCAATT
GTGTATCTGTTAT
Found at i:25670537 original size:27 final size:27
Alignment explanation
Indices: 25670506--25670684 Score: 218
Period size: 27 Copynumber: 6.6 Consensus size: 27
25670496 TTAGTTTACC
*
25670506 AAATTACCAAAATACCCCTATTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
25670533 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
25670560 AAATTACCAAAA-AGCCCCTAGTTTGTA
1 AAATTACCAAAATA-CCCCTAGTTTGTA
25670587 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
25670614 AAATTATCAAAATACCTCTGGTTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
*
25670641 AAATTACCAAAATACCCCT-GATTTGTG
1 AAATTACCAAAATACCCCTAG-TTTGTA
**
25670668 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
25670685 TCAACCTGTA
Statistics
Matches: 132, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.02
27 129 0.98
28 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:25670571 original size:54 final size:54
Alignment explanation
Indices: 25670506--25670738 Score: 222
Period size: 54 Copynumber: 4.3 Consensus size: 54
25670496 TTAGTTTACC
* * * * *
25670506 AAATTACCAAAATACCCCTATTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTA
25670560 AAATTACCAAAA-AGCCCCTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATA-CCCCTAGTTTGTAAAATTACCAAAATACCCCTGA-TTTGTA
* * * * *
25670614 AAATTATCAAAATACCTCTGGTTTGTGAAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTA
** *** *** *
25670668 AAATTACTGAAATA-CCCTCAACCTGTAAAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCT-GATTTGTA
*
25670722 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
25670739 TTAATTTACA
Statistics
Matches: 145, Mismatches: 27, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
53 8 0.06
54 133 0.92
55 4 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTA
Found at i:25670636 original size:81 final size:81
Alignment explanation
Indices: 25670506--25670738 Score: 242
Period size: 81 Copynumber: 2.9 Consensus size: 81
25670496 TTAGTTTACC
*
25670506 AAATTACCAAAATACCCCTATTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
25670571 A-AGCCCCT-AGTTTGTA
66 ATA-CCCCTGA-TTTGTA
* *
25670587 AAATTACCAAAATACCCCTAGTTTGTAAAATTA-TCAAAATA-CCTCTGGTTTGTGAAATTACCA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACT-AAAATACCCT-TGGTTTATAAAATTACCA
*
25670650 AAATACCCCTGATTTGTG
64 AAATACCCCTGATTTGTA
** *** * * * ** *
25670668 AAATTACTGAAATA-CCCTCAACCTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAA
1 AAATTACCAAAATACCCCT-AGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAA
*
25670732 AGTACCC
65 AATACCC
25670739 TTAATTTACA
Statistics
Matches: 130, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
80 8 0.06
81 116 0.89
82 6 0.05
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
ATACCCCTGATTTGTA
Found at i:25670737 original size:27 final size:27
Alignment explanation
Indices: 25670506--25670739 Score: 183
Period size: 27 Copynumber: 8.7 Consensus size: 27
25670496 TTAGTTTACC
*
25670506 AAATTACCAAAATACCC-CTATTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * * *
25670533 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*
25670560 AAATTACCAAAA-AGCCC-CTAGTTTGTA
1 AAATTACCAAAATA-CCCTCGA-TTTGTA
*
25670587 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * *
25670614 AAATTATCAAAATA-CCTCTGGTTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
*
25670641 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
** * **
25670668 AAATTACTGAAATACCCTCAACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
25670695 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
25670722 AAATTACCAAAGTACCCT
1 AAATTACCAAAATACCCT
25670740 TAATTTACAG
Statistics
Matches: 170, Mismatches: 29, Indels: 16
0.79 0.13 0.07
Matches are distributed among these distances:
26 3 0.02
27 163 0.96
28 4 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:25670791 original size:27 final size:27
Alignment explanation
Indices: 25670668--25670793 Score: 76
Period size: 27 Copynumber: 4.7 Consensus size: 27
25670658 CTGATTTGTG
* **
25670668 AAATTACTGAAATACCCTCAACCTGTA
1 AAATTACTGAAATACCCTCAACTTACA
* * **
25670695 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCAACTTACA
* * *
25670722 AAATTAC-CAAAGTACCCTTAATTTACA
1 AAATTACTGAAA-TACCCTCAACTTACA
* *** * *
25670749 GAATTA-TCGTTTTACCCTCGATTTACA
1 AAATTACT-GAAATACCCTCAACTTACA
25670776 AAATTACTGAAATACCCT
1 AAATTACTGAAATACCCT
25670794 TGTAGGGTAG
Statistics
Matches: 74, Mismatches: 21, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
26 3 0.04
27 70 0.95
28 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAACTTACA
Found at i:25670810 original size:27 final size:27
Alignment explanation
Indices: 25670777--25670980 Score: 225
Period size: 27 Copynumber: 7.6 Consensus size: 27
25670767 CGATTTACAA
*
25670777 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
25670804 AAATACTGAAATACCCCTGTAGGAT-G
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
25670830 AAATTACCGCAATACCCCTGTAGGGTAG
1 -AATTACTGAAATACCCCTGTAGGGTAG
* *
25670858 AATTA-TCGCAATACCCCTGTAGAGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
25670885 AATTA-TCGAAATATCCCTATAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
25670912 AATTACCGAAATACCCCTGTAGGGTAC
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
25670939 AATTACCGAAATACCCCTGTAGGGTGG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
25670966 AATTACCGAGATACC
1 AATTACTGAAATACC
25670981 TTGTGGGGAA
Statistics
Matches: 153, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 151 0.99
28 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:25670969 original size:81 final size:81
Alignment explanation
Indices: 25670777--25670980 Score: 250
Period size: 81 Copynumber: 2.5 Consensus size: 81
25670767 CGATTTACAA
* * * * *
25670777 AATTACTGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGATGAAATTACCGCAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGATGAAATTACCGAAA
*
25670842 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAC
* * * * *
25670858 AATTATCGCAATACCCCTGTAGAGTAGAATTA-TCGAAATATCCCTATAGGGT-AGAATTACCGA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACT-GAAATACCCCTATAGGATGA-AATTACCGA
25670921 AATACCCCTGTAGGGTAC
64 AATACCCCTGTAGGGTAC
* * *
25670939 AATTACCGAAATACCCCTGTAGGGTGGAATTACCGAGATACC
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACC
25670981 TTGTGGGGAA
Statistics
Matches: 102, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
80 2 0.02
81 100 0.98
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (81 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGATGAAATTACCGAAA
TACCCCTGTAGGGTAC
Found at i:25671477 original size:22 final size:22
Alignment explanation
Indices: 25671426--25671489 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
25671416 TAAAGCCTTT
* *
25671426 TGATTATGGCTTTGTGTCAACC
1 TGATTATGGCTCTGTGCCAACC
*
25671448 T-ACATATGGCTCTGTGCCAACC
1 TGA-TTATGGCTCTGTGCCAACC
*
25671470 TGATTATGGCTGTGTGCCAA
1 TGATTATGGCTCTGTGCCAA
25671490 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.34
Consensus pattern (22 bp):
TGATTATGGCTCTGTGCCAACC
Found at i:25671678 original size:27 final size:27
Alignment explanation
Indices: 25671648--25671749 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
25671638 ATTCTGTTAA
* *
25671648 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
25671675 GTGGCTATGCCACAAATATATG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
* *
25671702 GTGGCTCTGCGACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
25671729 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
25671750 AAAACTGAGC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 7 0.11
27 50 0.79
28 6 0.10
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:25671924 original size:6 final size:6
Alignment explanation
Indices: 25671886--25671999 Score: 92
Period size: 6 Copynumber: 18.3 Consensus size: 6
25671876 TTGCATCCAC
* * *
25671886 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
25671936 -TTACCTG ATTCTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
25671986 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
25672000 AATGTTTCTT
Statistics
Matches: 88, Mismatches: 8, Indels: 24
0.73 0.07 0.20
Matches are distributed among these distances:
5 7 0.08
6 62 0.70
7 14 0.16
8 5 0.06
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:25671932 original size:31 final size:31
Alignment explanation
Indices: 25671886--25671957 Score: 126
Period size: 31 Copynumber: 2.3 Consensus size: 31
25671876 TTGCATCCAC
25671886 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
25671918 ATTCTGATTTTGATTCTGTTACCTGATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
25671949 ATTCTGATT
1 ATTCTGATT
25671958 CTGTTACCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
31 32 0.82
32 7 0.18
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:25671943 original size:25 final size:25
Alignment explanation
Indices: 25671915--25671985 Score: 124
Period size: 25 Copynumber: 2.8 Consensus size: 25
25671905 TTACCTGATA
*
25671915 CTGATTCTGATTTTGATTCTGTTAC
1 CTGATTCTGATTCTGATTCTGTTAC
25671940 CTGATTCTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGATTCTGTTAC
*
25671965 CTAATTCTGATTCTGATTCTG
1 CTGATTCTGATTCTGATTCTG
25671986 ATTCTAGTTC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.17, C:0.18, G:0.15, T:0.49
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTTAC
Done.