Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 79 of 167
Found at i:25671975 original size:31 final size:29
Alignment explanation
Indices: 25671886--25671990 Score: 119
Period size: 31 Copynumber: 3.6 Consensus size: 29
25671876 TTGCATCCAC
*
25671886 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCT-AT-CTG
*
25671918 ATTCTGATTTTGATTCTGTTA-C---CTG
1 ATTCTGATTCTGATTCTGTTACCTATCTG
25671943 ATTCTGATTCTGATTCTGTTACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCT-A-TCTG
25671974 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
25671991 AGTTCTGATA
Statistics
Matches: 66, Mismatches: 1, Indels: 13
0.82 0.01 0.16
Matches are distributed among these distances:
25 23 0.35
26 1 0.02
30 1 0.02
31 34 0.52
32 7 0.11
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.50
Consensus pattern (29 bp):
ATTCTGATTCTGATTCTGTTACCTATCTG
Found at i:25673989 original size:22 final size:22
Alignment explanation
Indices: 25673961--25674082 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
25673951 TTCCACATCC
25673961 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
25673983 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
25674007 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
25674030 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
25674054 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
25674077 ATCACA
1 ATCACA
25674083 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:25673996 original size:47 final size:47
Alignment explanation
Indices: 25673954--25674711 Score: 1234
Period size: 47 Copynumber: 16.1 Consensus size: 47
25673944 TATACACTTC
* * *
25673954 CACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCA-TGTT
25674001 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
* * **
25674048 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
25674095 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
25674142 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
25674189 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
25674236 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
25674283 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
25674330 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
25674377 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
25674424 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
* * **
25674471 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
* * **
25674518 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
* * **
25674565 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
* * * *
25674612 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCA-TGTT
* * *
25674659 CACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCA-TGTT
25674706 CACATT
1 CACATT
25674712 TATTCAAATA
Statistics
Matches: 689, Mismatches: 20, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
46 1 0.00
47 687 1.00
48 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
Found at i:25676235 original size:56 final size:56
Alignment explanation
Indices: 25676168--25676287 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
25676158 TATTAGTTTA
25676168 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
* *
25676224 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACATAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
25676280 TTGCCCAT
1 TTGCCCAT
25676288 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:25677600 original size:40 final size:40
Alignment explanation
Indices: 25677555--25678631 Score: 1841
Period size: 40 Copynumber: 26.9 Consensus size: 40
25677545 CGAATACACG
* * * *
25677555 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
25677595 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
25677635 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
25677675 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGAATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
25677715 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
25677755 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
25677795 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGAATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
25677835 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
25677875 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
25677915 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
25677955 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
25677995 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
25678035 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
25678075 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
25678115 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
25678155 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
25678195 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
25678235 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
25678275 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
25678315 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
25678355 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
25678395 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
25678435 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
25678475 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
25678515 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
25678555 TCACTAGCATGAATGCTCTTCGGGACTTAGCTCGGTTATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * ** *
25678595 GTAACTCGCACAAATGC-CTTCGGGACTTAACCCGGAT
1 -TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
25678632 TTAGTAACTC
Statistics
Matches: 986, Mismatches: 50, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
40 974 0.99
41 12 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:25678637 original size:40 final size:40
Alignment explanation
Indices: 25677572--25678749 Score: 339
Period size: 40 Copynumber: 29.5 Consensus size: 40
25677562 CATGATTGCT
* * *
25677572 CTTCGGGACCTAGCCCGGA--TA-TAACACCAGCACGAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAAC-TC-GCACAAATGC
** * * * * *
25677611 TCTTCGGGGTTTAGCACGGATATA-TCACTAGCACGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * * **
25677651 TCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * * **
25677691 TCTTCGGGACTTAGCCCGAATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
** * * **
25677731 TCTTCGGGACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * * **
25677771 TCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * * **
25677811 TCTTCGGGACTTAGCCCGAATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
** * * **
25677851 TCTTCGGGACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * * **
25677891 TCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
** * * **
25677931 TCTTCGGGACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * * **
25677971 TCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
** * * **
25678011 TCTTCGGGACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * * **
25678051 TCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
** * * **
25678091 TCTTCGGGACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * * **
25678131 TCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
** * * **
25678171 TCTTCGGGACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * * **
25678211 TCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
** * * **
25678251 TCTTCGGGACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * * **
25678291 TCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
** * * **
25678331 TCTTCGGGACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * * **
25678371 TCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
** * * **
25678411 TCTTCGGGACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * * **
25678451 TCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
** * * **
25678491 TCTTCGGGACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * * **
25678531 TCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
*
25678571 TCTTCGGGACTTAGCTCGG-TTATAGTAACTCGCACAAATGC
1 -CTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGC
* *
25678612 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
*
25678652 CTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * * *
25678691 CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GC
1 CTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGC
25678731 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
25678750 CATCATTCGA
Statistics
Matches: 1071, Mismatches: 58, Indels: 18
0.93 0.05 0.02
Matches are distributed among these distances:
38 2 0.00
39 34 0.03
40 1005 0.94
41 25 0.02
42 5 0.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:25682525 original size:56 final size:56
Alignment explanation
Indices: 25682434--25682556 Score: 176
Period size: 55 Copynumber: 2.2 Consensus size: 56
25682424 GAGATTGGCG
* * *
25682434 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATAGCA
* *
25682491 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
*
25682546 CTGAGTGTGCG
1 CTAAGTGTGCG
25682557 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 23 0.38
56 22 0.37
57 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
Found at i:25682543 original size:27 final size:28
Alignment explanation
Indices: 25682434--25682556 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
25682424 GAGATTGGCG
* * * *
25682434 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
25682463 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
25682491 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
25682519 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
25682546 CTGAGTGTGCG
1 CTAAGTGTGCG
25682557 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.28
28 48 0.55
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:25682567 original size:27 final size:27
Alignment explanation
Indices: 25682459--25682569 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
25682449 TAAATTGTAC
* * *
25682459 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
25682487 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
25682515 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
25682542 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
25682569 A
1 A
25682570 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:25687963 original size:65 final size:65
Alignment explanation
Indices: 25687864--25688006 Score: 180
Period size: 65 Copynumber: 2.2 Consensus size: 65
25687854 CATCAGGATG
* ** **
25687864 CTCACAAAGAGTTGTATTTGTGTTTGCAACATATG-CAGTATCACAACTGATCATAAAACAGGAC
1 CTCACAAAGAGCTGTATTTGTGTCCGCAACATATGCCAG-ATCACAACCAATCATAAAACAGGAC
25687928 A
65 A
* * * * *
25687929 CTCACAAAGAGCTGTGTTTGTGTCCGCAATATATGCCAGATCACAACCAATCATATACCAGGGCA
1 CTCACAAAGAGCTGTATTTGTGTCCGCAACATATGCCAGATCACAACCAATCATAAAACAGGACA
25687994 CTCACAAAGAGCT
1 CTCACAAAGAGCT
25688007 ACGGTAGTCC
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
65 64 0.96
66 3 0.04
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.24
Consensus pattern (65 bp):
CTCACAAAGAGCTGTATTTGTGTCCGCAACATATGCCAGATCACAACCAATCATAAAACAGGACA
Found at i:25689644 original size:40 final size:40
Alignment explanation
Indices: 25689593--25689673 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
25689583 GCATTTTCCA
25689593 TGTACACACAGCTAGGGGACACACGGCTGTATGCAGATTT
1 TGTACACACAGCTAGGGGACACACGGCTGTATGCAGATTT
25689633 TGTACACACAGCTAGGGGACACACGGCTGTATGCAGATTT
1 TGTACACACAGCTAGGGGACACACGGCTGTATGCAGATTT
25689673 T
1 T
25689674 TCTTACATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
TGTACACACAGCTAGGGGACACACGGCTGTATGCAGATTT
Found at i:25694052 original size:32 final size:32
Alignment explanation
Indices: 25694011--25694074 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
25694001 TAAGTTCATA
*
25694011 AACAAATGAATGTCTTTAAATTGAATTATATG
1 AACAAATGAATGCCTTTAAATTGAATTATATG
25694043 AACAAATGAATGCCTTTAAATTGAATTATATG
1 AACAAATGAATGCCTTTAAATTGAATTATATG
25694075 TGCTTACTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (32 bp):
AACAAATGAATGCCTTTAAATTGAATTATATG
Found at i:25697814 original size:47 final size:46
Alignment explanation
Indices: 25697749--25697916 Score: 182
Period size: 46 Copynumber: 3.6 Consensus size: 46
25697739 ATTGTTGGCT
*
25697749 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-TATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCATTA-TACGAGAGCC
* *
25697795 AGTGTAAGACCATGTCTGGGACATGGCATTGG-CATTGATACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATT-ATACGAGAGCC
* * *
25697843 AGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGAGACGTA-AGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAT-TATACG-AGAGCC
* *
25697889 AGTGTAAGACATGTTTGGGACATACATC
1 AGTGTAAGACATGTCTGGGACATGCATC
25697917 AGCTACGAGA
Statistics
Matches: 107, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
46 50 0.47
47 32 0.30
48 24 0.22
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCATTATACGAGAGCC
Found at i:25697899 original size:46 final size:48
Alignment explanation
Indices: 25697746--25698014 Score: 229
Period size: 47 Copynumber: 5.8 Consensus size: 48
25697736 GTTATTGTTG
*
25697746 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAT--ATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TCGA-GATGAGA
* * * * * *
25697792 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGATACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGAGA
*
25697840 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATG-AGA
* * * *
25697886 GCTAGTGTAAGA-CATGTTTGGGACAT-ACATCAG-CTACGAGATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGAGA
* * * * * *
25697932 GTTAGTGTAAGACCATATCTGGGACATGGCAT-TGACTTGAGATGTGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGAGA
* *
25697979 G-TCAGTGTCAGATCATGTCTGGGACATGGCATCGGC
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGC
25698015 ACCTTACCCA
Statistics
Matches: 185, Mismatches: 26, Indels: 22
0.79 0.11 0.09
Matches are distributed among these distances:
45 3 0.02
46 74 0.40
47 77 0.42
48 30 0.16
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGAGA
Found at i:25697998 original size:140 final size:141
Alignment explanation
Indices: 25697746--25698014 Score: 348
Period size: 140 Copynumber: 1.9 Consensus size: 141
25697736 GTTATTGTTG
* * * * *
25697746 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATACATCAGCCAGATGATGAGAGCCAGTGTAAGACCATATC
* *
25697811 TGGGACATGGCATTGGCATTGATACGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCC
66 TGGGACATGGCATTGACATTGAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCC
25697875 TCGAGACGTAA
131 TCGAGACGTAA
* * * **
25697886 GCTAGTGTAAGACATGTTTGGGACATACATCAGCTACGA-GATGATAGTTAGTGTAAGACCATAT
1 GCTAGTGTAAGACATGTCTGGGACATACATCAGCCA-GATGATGAGAGCCAGTGTAAGACCATAT
* * *
25697950 CTGGGACATGGCATTGAC-TTGAGATGTGAG-TCAGTGTCAGATCATGTCTGGGACATGGCATCG
65 CTGGGACATGGCATTGACATTGAGACGAGAGCT-AGTGTAAGA-CATGTCTGGGACATGGCATCG
25698013 GC
128 GC
25698015 ACCTTACCCA
Statistics
Matches: 110, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
138 1 0.01
139 17 0.15
140 83 0.75
141 9 0.08
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (141 bp):
GCTAGTGTAAGACATGTCTGGGACATACATCAGCCAGATGATGAGAGCCAGTGTAAGACCATATC
TGGGACATGGCATTGACATTGAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCC
TCGAGACGTAA
Found at i:25702729 original size:3 final size:3
Alignment explanation
Indices: 25702721--25702748 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
25702711 TGTTTATGAA
25702721 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
25702749 GTAATTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:25704688 original size:25 final size:25
Alignment explanation
Indices: 25704659--25704706 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
25704649 TTATAATATG
*
25704659 AAAATGACTG-TTTTGCCCCTAGGTA
1 AAAATGAC-GATTTTACCCCTAGGTA
25704684 AAAATGACGATTTTACCCCTAGG
1 AAAATGACGATTTTACCCCTAGG
25704707 GTTTAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
AAAATGACGATTTTACCCCTAGGTA
Found at i:25704893 original size:24 final size:25
Alignment explanation
Indices: 25704817--25704886 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
25704807 GAGGAAGTGC
* * *
25704817 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
25704842 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
25704867 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
25704887 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:25704899 original size:24 final size:25
Alignment explanation
Indices: 25704816--25704899 Score: 86
Period size: 25 Copynumber: 3.4 Consensus size: 25
25704806 GGAGGAAGTG
* *
25704816 CAAAAG-GGCTATGCCCCAGTTTAC
1 CAAAAGAGGCTTTGCCCCAGTTTAT
25704840 CGAAAAG-GGCTTTGCCCCAGTTTAT
1 C-AAAAGAGGCTTTGCCCCAGTTTAT
*
25704865 CAAAA-AGGGCTTTGCCCTAG-TTAT
1 CAAAAGA-GGCTTTGCCCCAGTTTAT
*
25704889 TAAAAGAGGCT
1 CAAAAGAGGCT
25704900 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
24 17 0.33
25 35 0.67
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (25 bp):
CAAAAGAGGCTTTGCCCCAGTTTAT
Found at i:25706333 original size:91 final size:90
Alignment explanation
Indices: 25706191--25706360 Score: 261
Period size: 91 Copynumber: 1.9 Consensus size: 90
25706181 TTATCAATAG
* *
25706191 GAAGTTCAAAAAAACAAGTCTAGAGAAATGTCGAGAAAAATAGCAATTGAATAGCAACAATCAAC
1 GAAGTTCAAAAAAACAAGTCTAGAGAAATGTCGAGAAAAACAACAATTGAATAGCAACAATCAAC
**
25706256 AATTGCTGAGAAATCTTGCCGGTAA
66 AATTGAAGAGAAATCTTGCCGGTAA
*
25706281 GAAGTTCAAAAAAAATAAGT-TCAGAGAAATGTCGAGAAAAACAACAATTGAATAGCAACAATCA
1 GAAGTTC-AAAAAAACAAGTCT-AGAGAAATGTCGAGAAAAACAACAATTGAATAGCAACAATCA
*
25706345 GCAATTGAAGAGAAAT
64 ACAATTGAAGAGAAAT
25706361 TTTTAATTAG
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
90 8 0.11
91 64 0.89
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.19
Consensus pattern (90 bp):
GAAGTTCAAAAAAACAAGTCTAGAGAAATGTCGAGAAAAACAACAATTGAATAGCAACAATCAAC
AATTGAAGAGAAATCTTGCCGGTAA
Found at i:25717123 original size:50 final size:50
Alignment explanation
Indices: 25716991--25717191 Score: 233
Period size: 50 Copynumber: 4.0 Consensus size: 50
25716981 ATGATCTATT
* * * * *
25716991 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAA
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATA
* * * * * *
25717042 CTGTGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATG
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
* *
25717092 GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
* * * *
25717142 GT-TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
25717191 G
1 G
25717192 CTTCGGCTAC
Statistics
Matches: 128, Mismatches: 22, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
49 42 0.33
50 48 0.38
51 38 0.30
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (50 bp):
GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
Found at i:25722208 original size:30 final size:30
Alignment explanation
Indices: 25722160--25722217 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
25722150 GTTTTTGACC
* *
25722160 CACATGGCCTAGCCACACGGGTGTGTGGAA
1 CACACGGCCTAGCCACACGGGCGTGTGGAA
* *
25722190 CACACGGCCTGGCTACACGGGCGTGTGG
1 CACACGGCCTAGCCACACGGGCGTGTGG
25722218 GATCTCACAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.19, C:0.29, G:0.36, T:0.16
Consensus pattern (30 bp):
CACACGGCCTAGCCACACGGGCGTGTGGAA
Found at i:25722497 original size:15 final size:14
Alignment explanation
Indices: 25722450--25722620 Score: 80
Period size: 15 Copynumber: 11.3 Consensus size: 14
25722440 ATCACCCCAA
*
25722450 TTTTA-TTTTATTT
1 TTTTATTTTTATAT
25722463 TATTTATTTTTA-AT
1 T-TTTATTTTTATAT
*
25722477 TGTTATATTATT-TAT
1 T-TT-TATTTTTATAT
*
25722492 TTTTATTTTAATAAT
1 TTTTATTTTTAT-AT
*
25722507 TAATTAATTAATTTAGTAT
1 T--TTTATT--TTTA-TAT
**
25722526 TTTTATACTTATAT
1 TTTTATTTTTATAT
25722540 TTTTAATTTTTTTATAT
1 TTTT-A--TTTTTATAT
25722557 TTTTATTTTTTATAT
1 TTTTA-TTTTTATAT
*
25722572 ACTTTTATTATTTTTAT
1 --TTTTATT-TTTATAT
25722589 TTTTATTTTGTA-AT
1 TTTTATTTT-TATAT
* *
25722603 TTCTATTTTTTTAT
1 TTTTATTTTTATAT
25722617 TTTT
1 TTTT
25722621 TCTTTCGTAT
Statistics
Matches: 122, Mismatches: 17, Indels: 37
0.69 0.10 0.21
Matches are distributed among these distances:
13 7 0.06
14 35 0.29
15 39 0.32
16 3 0.02
17 31 0.25
19 6 0.05
20 1 0.01
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (14 bp):
TTTTATTTTTATAT
Found at i:25722503 original size:27 final size:26
Alignment explanation
Indices: 25722448--25722500 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
25722438 TAATCACCCC
*
25722448 AATTTTATTTTATTTTATTTATTTTT
1 AATTTTATATTATTTTATTTATTTTT
*
25722474 AATTGTTATATTATTTATTTTTATTTT
1 AATT-TTATATTATTT-TATTTATTTT
25722501 AATAATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 4 0.17
27 10 0.43
28 9 0.39
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (26 bp):
AATTTTATATTATTTTATTTATTTTT
Found at i:25722508 original size:22 final size:20
Alignment explanation
Indices: 25722450--25722501 Score: 77
Period size: 22 Copynumber: 2.5 Consensus size: 20
25722440 ATCACCCCAA
*
25722450 TTTTATTTTATTTTATTTAT
1 TTTTATTTTATATTATTTAT
25722470 TTTTAATTGTTATATTATTTAT
1 TTTT-ATT-TTATATTATTTAT
25722492 TTTTATTTTA
1 TTTTATTTTA
25722502 ATAATTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 7 0.24
21 6 0.21
22 16 0.55
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (20 bp):
TTTTATTTTATATTATTTAT
Found at i:25722544 original size:23 final size:23
Alignment explanation
Indices: 25722518--25722571 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
25722508 AATTAATTAA
*
25722518 TTTAGTATTTTTATACTTATATT
1 TTTAATATTTTTATACTTATATT
* * *
25722541 TTTAATTTTTTTATATTTTTATT
1 TTTAATATTTTTATACTTATATT
*
25722564 TTTTATAT
1 TTTAATAT
25722572 ACTTTTATTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (23 bp):
TTTAATATTTTTATACTTATATT
Found at i:25722556 original size:17 final size:16
Alignment explanation
Indices: 25722534--25722621 Score: 94
Period size: 17 Copynumber: 5.6 Consensus size: 16
25722524 ATTTTTATAC
25722534 TTATATTTTTAATTTTT
1 TTATATTTTT-ATTTTT
25722551 TTATATTTTTATTTTT
1 TTATATTTTTATTTTT
* *
25722567 TATATACTTTTATTATT
1 T-TATATTTTTATTTTT
25722584 TT-TATTTTTA-TTTT
1 TTATATTTTTATTTTT
* *
25722598 GTA-ATTTCTATTTTT
1 TTATATTTTTATTTTT
25722613 TTAT-TTTTT
1 TTATATTTTT
25722622 CTTTCGTATT
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
14 10 0.17
15 17 0.29
16 8 0.14
17 24 0.41
ACGTcount: A:0.20, C:0.02, G:0.01, T:0.76
Consensus pattern (16 bp):
TTATATTTTTATTTTT
Found at i:25722559 original size:8 final size:8
Alignment explanation
Indices: 25722534--25722620 Score: 62
Period size: 7 Copynumber: 11.2 Consensus size: 8
25722524 ATTTTTATAC
25722534 TTATATTT
1 TTATATTT
*
25722542 TTAATTTTT
1 TT-ATATTT
25722551 TTATATTT
1 TTATATTT
25722559 TTAT-TTT
1 TTATATTT
25722566 TTATATACTT
1 TTATAT--TT
25722576 TTAT-TATT
1 TTATAT-TT
25722584 TT-TATTT
1 TTATATTT
25722591 TTAT-TTT
1 TTATATTT
*
25722598 GTA-ATTT
1 TTATATTT
*
25722605 CTAT-TTT
1 TTATATTT
25722612 TT-TATTT
1 TTATATTT
25722619 TT
1 TT
25722621 TCTTTCGTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 19
0.72 0.07 0.21
Matches are distributed among these distances:
6 1 0.02
7 31 0.48
8 18 0.28
9 8 0.12
10 6 0.09
ACGTcount: A:0.21, C:0.02, G:0.01, T:0.76
Consensus pattern (8 bp):
TTATATTT
Found at i:25722616 original size:22 final size:22
Alignment explanation
Indices: 25722588--25722636 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
25722578 ATTATTTTTA
25722588 TTTTTATTTTGTAATTTC-TATT
1 TTTTTATTTT-TAATTTCGTATT
**
25722610 TTTTTATTTTTTCTTTCGTATT
1 TTTTTATTTTTAATTTCGTATT
25722632 TTTTT
1 TTTTT
25722637 TACTATTATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 5 0.21
22 19 0.79
ACGTcount: A:0.12, C:0.06, G:0.04, T:0.78
Consensus pattern (22 bp):
TTTTTATTTTTAATTTCGTATT
Found at i:25722619 original size:28 final size:30
Alignment explanation
Indices: 25722547--25722620 Score: 89
Period size: 32 Copynumber: 2.4 Consensus size: 30
25722537 TATTTTTAAT
* *
25722547 TTTTTTATATTTTTATTTTTTATATACTTTTA
1 TTTTTT-TATTTTTATTTTGTATATA-TTCTA
25722579 TTATTTTTATTTTTATTTTGTA-AT-TTCTA
1 TT-TTTTTATTTTTATTTTGTATATATTCTA
25722608 TTTTTTTATTTTT
1 TTTTTTTATTTTT
25722621 TCTTTCGTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
28 11 0.28
29 6 0.15
31 2 0.05
32 16 0.41
33 4 0.10
ACGTcount: A:0.19, C:0.03, G:0.01, T:0.77
Consensus pattern (30 bp):
TTTTTTTATTTTTATTTTGTATATATTCTA
Found at i:25722621 original size:8 final size:8
Alignment explanation
Indices: 25722534--25722621 Score: 61
Period size: 8 Copynumber: 10.1 Consensus size: 8
25722524 ATTTTTATAC
25722534 TTATATTTT
1 TTAT-TTTT
*
25722543 TAATTTTT
1 TTATTTTT
*
25722551 TTATATTT
1 TTATTTTT
25722559 TTATTTTT
1 TTATTTTT
**
25722567 TATATACTT
1 T-TATTTTT
25722576 TTATTATTT
1 TTATT-TTT
25722585 TTATTTTT
1 TTATTTTT
25722593 ATT-TTGTAATT
1 -TTATT-T--TT
25722604 TCTATTTTT
1 T-TATTTTT
25722613 TTATTTTT
1 TTATTTTT
25722621 T
1 T
25722622 CTTTCGTATT
Statistics
Matches: 63, Mismatches: 8, Indels: 17
0.72 0.09 0.19
Matches are distributed among these distances:
8 34 0.54
9 22 0.35
10 1 0.02
11 4 0.06
12 2 0.03
ACGTcount: A:0.20, C:0.02, G:0.01, T:0.76
Consensus pattern (8 bp):
TTATTTTT
Found at i:25722706 original size:17 final size:17
Alignment explanation
Indices: 25722684--25722721 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
25722674 TATTATTGAG
* *
25722684 TTTATTGTTATTTTATT
1 TTTATTATTATTATATT
25722701 TTTATTATTATTATATT
1 TTTATTATTATTATATT
25722718 TTTA
1 TTTA
25722722 ATCTTTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
TTTATTATTATTATATT
Found at i:25722825 original size:21 final size:21
Alignment explanation
Indices: 25722801--25722846 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
25722791 TTTGAAAGAT
*
25722801 TTATGGTTGTTTCTAATCGAG
1 TTATGGTTGTTTCTAATCAAG
25722822 TTATGGTTGTTTCTAATCAAG
1 TTATGGTTGTTTCTAATCAAG
25722843 TTAT
1 TTAT
25722847 AACCCCTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.22, C:0.09, G:0.20, T:0.50
Consensus pattern (21 bp):
TTATGGTTGTTTCTAATCAAG
Found at i:25732790 original size:32 final size:30
Alignment explanation
Indices: 25732747--25732806 Score: 84
Period size: 32 Copynumber: 1.9 Consensus size: 30
25732737 TTTTTTATCG
**
25732747 TTATTTATTTATATTAAAGTTATTATAAAAA
1 TTATTTATTTATAAAAAAGTT-TTATAAAAA
25732778 TTATATTATTTATAAAAAAGTTTTATAAA
1 TTAT-TTATTTATAAAAAAGTTTTATAAA
25732807 GTGTTATGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 11 0.42
32 15 0.58
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (30 bp):
TTATTTATTTATAAAAAAGTTTTATAAAAA
Found at i:25735437 original size:19 final size:19
Alignment explanation
Indices: 25735410--25735453 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
25735400 TAAAATTATG
* *
25735410 TAATAAATATAATTATAAAA
1 TAAT-AATATAAATAAAAAA
25735430 TAATAATATAAATAAAAAA
1 TAATAATATAAATAAAAAA
25735449 TAATA
1 TAATA
25735454 TTTTGATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
TAATAATATAAATAAAAAA
Found at i:25735452 original size:30 final size:30
Alignment explanation
Indices: 25735393--25735452 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
25735383 GTGATTTAGA
* *
25735393 TATAAAATAAAATTATGTAATAAATATAAT
1 TATAAAATAAAATTATGAAATAAAAATAAT
25735423 TATAAAATAATAA-TAT-AAATAAAAAATAAT
1 TATAAAATAA-AATTATGAAAT-AAAAATAAT
25735453 ATTTTGATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
29 3 0.12
30 21 0.81
31 2 0.08
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (30 bp):
TATAAAATAAAATTATGAAATAAAAATAAT
Found at i:25738366 original size:27 final size:27
Alignment explanation
Indices: 25738328--25738392 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
25738318 TAGTTTAATT
25738328 GCAATATTATGTTATAGCAGTATTACC
1 GCAATATTATGTTATAGCAGTATTACC
* *
25738355 GCAATATTATGTTATAGCGGTATTACT
1 GCAATATTATGTTATAGCAGTATTACC
25738382 GCAATA-TATGT
1 GCAATATTATGT
25738393 GAGTCATGCA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 5 0.14
27 31 0.86
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.38
Consensus pattern (27 bp):
GCAATATTATGTTATAGCAGTATTACC
Found at i:25740079 original size:3 final size:3
Alignment explanation
Indices: 25740071--25740095 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
25740061 AAATGGTAAG
25740071 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
25740096 TTATTGAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:25740234 original size:18 final size:18
Alignment explanation
Indices: 25740198--25740243 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
25740188 AATATTTATA
*
25740198 AATAATAATAGTAAATAT
1 AATAATAATATTAAATAT
*
25740216 AATAATAATATTAAGTAT
1 AATAATAATATTAAATAT
*
25740234 AGT-ATAATAT
1 AATAATAATAT
25740244 GTTCACAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 7 0.28
18 18 0.72
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (18 bp):
AATAATAATATTAAATAT
Found at i:25740273 original size:19 final size:18
Alignment explanation
Indices: 25740249--25740284 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
25740239 AATATGTTCA
25740249 CAACAATAATAATAATAAG
1 CAACAATAAT-ATAATAAG
25740268 CAACAATAATATAATAA
1 CAACAATAATATAATAA
25740285 TAATATAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.64, C:0.11, G:0.03, T:0.22
Consensus pattern (18 bp):
CAACAATAATATAATAAG
Found at i:25740285 original size:24 final size:25
Alignment explanation
Indices: 25740254--25740304 Score: 79
Period size: 24 Copynumber: 2.1 Consensus size: 25
25740244 GTTCACAACA
25740254 ATAATAATAATA-AGCAACAA-TAAT
1 ATAATAATAATATAGCAA-AACTAAT
25740278 ATAATAATAATATAGCAAAACTAAT
1 ATAATAATAATATAGCAAAACTAAT
25740303 AT
1 AT
25740305 TACAAATACT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 14 0.56
25 11 0.44
ACGTcount: A:0.61, C:0.08, G:0.04, T:0.27
Consensus pattern (25 bp):
ATAATAATAATATAGCAAAACTAAT
Found at i:25740845 original size:23 final size:23
Alignment explanation
Indices: 25740800--25740846 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
25740790 TAAAAAATTT
*
25740800 TGTTTTATTATTATTATTTTTTA
1 TGTTTTATTAATATTATTTTTTA
25740823 TGTTTTA-TAATATTATTATTTTA
1 TGTTTTATTAATATTATT-TTTTA
25740846 T
1 T
25740847 TTATATTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (23 bp):
TGTTTTATTAATATTATTTTTTA
Found at i:25740861 original size:25 final size:23
Alignment explanation
Indices: 25740803--25740861 Score: 57
Period size: 25 Copynumber: 2.4 Consensus size: 23
25740793 AAAATTTTGT
*
25740803 TTTATTATTATTATTTTTTATGT
1 TTTATTATTATTATTTTTTATGA
25740826 TTTATAATATTATTATTTTATTTAT-A
1 TTTAT--TATTATTA-TTT-TTTATGA
25740852 TTTATGTATT
1 TTTAT-TATT
25740862 TATAGATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
23 5 0.17
25 12 0.40
26 8 0.27
27 5 0.17
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.69
Consensus pattern (23 bp):
TTTATTATTATTATTTTTTATGA
Found at i:25740864 original size:34 final size:32
Alignment explanation
Indices: 25740804--25740870 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 32
25740794 AAATTTTGTT
25740804 TTATTATTATTATTTTTTATGTTTTATA-ATA
1 TTATTATTATTATTTTTTATGTTTTATAGATA
25740835 TTATTATT-TTATTTATATTTATGTATTTATAGATA
1 TTATTATTATTA-TT-T-TTTATGT-TTTATAGATA
25740870 T
1 T
25740871 AGAAAAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
30 3 0.10
31 10 0.32
32 1 0.03
33 7 0.23
34 6 0.19
35 4 0.13
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (32 bp):
TTATTATTATTATTTTTTATGTTTTATAGATA
Found at i:25742115 original size:5 final size:5
Alignment explanation
Indices: 25742105--25742136 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
25742095 ATGTCTGTGA
25742105 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
25742137 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:25742130 original size:9 final size:9
Alignment explanation
Indices: 25742106--25742136 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
25742096 TGTCTGTGAA
25742106 AAATAAAAT
1 AAATAAAAT
25742115 AAAATAAAAT
1 -AAATAAAAT
25742125 AAATAAAAT
1 AAATAAAAT
25742134 AAA
1 AAA
25742137 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:25746571 original size:5 final size:5
Alignment explanation
Indices: 25746561--25746592 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
25746551 CAATTTGTGA
25746561 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
25746593 GAACATACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:25752125 original size:27 final size:27
Alignment explanation
Indices: 25752094--25752271 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
25752084 TAAATTGTAC
25752094 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
25752121 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25752147 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
25752175 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
25752203 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25752230 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
25752257 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25752272 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:25752208 original size:82 final size:81
Alignment explanation
Indices: 25752095--25752250 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
25752085 AAATTGTACA
* *
25752095 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
25752159 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
25752176 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
25752241 TGCGAGTTGA
65 TGCGAATTGA
25752251 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:25752262 original size:82 final size:81
Alignment explanation
Indices: 25752091--25752271 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
25752081 GATTAAATTG
* *
25752091 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
25752156 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
25752172 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
25752236 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
25752254 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
25752272 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:25758257 original size:31 final size:31
Alignment explanation
Indices: 25758219--25758279 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
25758209 TTTTTAGGAG
*
25758219 AATGAAAGGTTAAGAGTCATTGGTTTATGGC
1 AATGAAAGGTCAAGAGTCATTGGTTTATGGC
25758250 AATGAAAGGTCAAGAGTCATTGGTTTATGG
1 AATGAAAGGTCAAGAGTCATTGGTTTATGG
25758280 TTTTTTATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.31
Consensus pattern (31 bp):
AATGAAAGGTCAAGAGTCATTGGTTTATGGC
Found at i:25776928 original size:45 final size:45
Alignment explanation
Indices: 25776864--25776957 Score: 161
Period size: 45 Copynumber: 2.1 Consensus size: 45
25776854 TTAAAACACA
* *
25776864 ACCCATACCATTTAACGATGCATCACTATAGATTACGAATTTTTT
1 ACCCAGACCATTTAACGATGCATCACTATAGATTACAAATTTTTT
*
25776909 ACCCAGACCATTTAACGATGCATCACTATAGATTGCAAATTTTTT
1 ACCCAGACCATTTAACGATGCATCACTATAGATTACAAATTTTTT
25776954 ACCC
1 ACCC
25776958 GATTCTCGCT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.33, C:0.24, G:0.10, T:0.33
Consensus pattern (45 bp):
ACCCAGACCATTTAACGATGCATCACTATAGATTACAAATTTTTT
Found at i:25789124 original size:29 final size:30
Alignment explanation
Indices: 25789058--25789126 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
25789048 TAAGTCTTCA
*
25789058 AAAATAAAGAAGAGAAAATAAAATTTAAAT
1 AAAATAAAGAAGAGAAAATAAAATTCAAAT
* *
25789088 AAACATAAA-AATAG-AAATAAAATTCATAGT
1 AAA-ATAAAGAAGAGAAAATAAAATTCA-AAT
25789118 AAAATAAAG
1 AAAATAAAG
25789127 GAACTCAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
29 16 0.48
30 12 0.36
31 5 0.15
ACGTcount: A:0.68, C:0.03, G:0.09, T:0.20
Consensus pattern (30 bp):
AAAATAAAGAAGAGAAAATAAAATTCAAAT
Found at i:25792467 original size:19 final size:19
Alignment explanation
Indices: 25792439--25792475 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
25792429 ACCTATCAGA
25792439 AGTAAATAAAATAAAATTT
1 AGTAAATAAAATAAAATTT
*
25792458 AGTAATTAAAATAAAATT
1 AGTAAATAAAATAAAATT
25792476 AAATTGCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.32
Consensus pattern (19 bp):
AGTAAATAAAATAAAATTT
Found at i:25800311 original size:27 final size:27
Alignment explanation
Indices: 25800263--25800422 Score: 141
Period size: 27 Copynumber: 5.9 Consensus size: 27
25800253 GCGAGGCTGC
* *
25800263 CAGATATTGTGACTA-AGTCACCAGATA
1 CAGATATTGTGGC-AGAGCCACCAGATA
25800290 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
25800316 TAGATATATATGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
25800343 CAGATAATTGTGCCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
25800370 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
25800397 TAGATAAATTTTGGCATAGCCACCAG
1 CAGAT--ATTGTGGCAGAGCCACCAG
25800423 GACGCTTCCT
Statistics
Matches: 109, Mismatches: 15, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
26 10 0.09
27 80 0.73
28 17 0.16
29 2 0.02
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:25800353 original size:54 final size:54
Alignment explanation
Indices: 25800281--25800422 Score: 196
Period size: 54 Copynumber: 2.6 Consensus size: 54
25800271 GTGACTAAGT
* *
25800281 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAATAGATATATATGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATATGGCAGAGC
* * *
25800335 CACCAGATCAGATAATTGTGCCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATATGGCAGAGC
* *
25800389 CACCAGATTAGATAAATTTTGGCATAGCCACCAG
1 CACCAGATCAGAT-AATTGTGGCATAGCCACCAG
25800423 GACGCTTCCT
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
53 5 0.06
54 55 0.71
55 18 0.23
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.20
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATATGGCAGAGC
Found at i:25808309 original size:27 final size:27
Alignment explanation
Indices: 25808279--25808420 Score: 166
Period size: 27 Copynumber: 5.2 Consensus size: 27
25808269 GTGACGAGGT
25808279 CACCAGATATAGATAATGTGGCATAGC
1 CACCAGATATAGATAATGTGGCATAGC
* *
25808306 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATATAGATA-ATGTGGCATAGC
*
25808333 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATATAGATAA-TGTGGCATAGC
* *
25808360 CACCAG-GATAGATATATGTGGCAGAGC
1 CACCAGATATAGATA-ATGTGGCATAGC
25808387 CACCAGAT-TAGATAAATTGTGGCATAGC
1 CACCAGATATAGAT-AA-TGTGGCATAGC
25808415 CACCAG
1 CACCAG
25808421 GATGCTTCCT
Statistics
Matches: 99, Mismatches: 8, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
26 7 0.07
27 74 0.75
28 18 0.18
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGATATAGATAATGTGGCATAGC
Found at i:25808354 original size:54 final size:54
Alignment explanation
Indices: 25808279--25808420 Score: 232
Period size: 54 Copynumber: 2.6 Consensus size: 54
25808269 GTGACGAGGT
25808279 CACCAGATATAGATAA-TGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-TAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* * *
25808333 CACCAGATCAGATAATTGTGGCATAGCCACCAGGATAGATATATGTGGCAGAGC
1 CACCAGATTAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
25808387 CACCAGATTAGATAAATTGTGGCATAGCCACCAG
1 CACCAGATTAGAT-AATTGTGGCATAGCCACCAG
25808421 GATGCTTCCT
Statistics
Matches: 82, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
53 6 0.07
54 56 0.68
55 20 0.24
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (54 bp):
CACCAGATTAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:25811035 original size:66 final size:66
Alignment explanation
Indices: 25810961--25811102 Score: 203
Period size: 66 Copynumber: 2.2 Consensus size: 66
25810951 TCGTGTGACC
* * * *
25810961 CAAGTCAGTAACCTCCCTAGTTTTCCCATGGCCATGGCACACGGGTGTGTCTCCGGTCGTGTGGT
1 CAAGTCAGTAACCTCCCTAGTTTTCCCACGGCCATGGCACACGGGCGTGTCTCCGGCCATGTGGT
25811026 A
66 A
* ** * *
25811027 CAAGTCAGTGACCTCTTTAGTTTTTCCACGGCTATGGCACACGGGCGTGTCTCCGGCCATGTGGT
1 CAAGTCAGTAACCTCCCTAGTTTTCCCACGGCCATGGCACACGGGCGTGTCTCCGGCCATGTGGT
25811092 A
66 A
25811093 CAAGTCAGTA
1 CAAGTCAGTA
25811103 TCTATGCCTT
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.18, C:0.27, G:0.27, T:0.27
Consensus pattern (66 bp):
CAAGTCAGTAACCTCCCTAGTTTTCCCACGGCCATGGCACACGGGCGTGTCTCCGGCCATGTGGT
A
Found at i:25811117 original size:66 final size:66
Alignment explanation
Indices: 25810961--25811126 Score: 167
Period size: 66 Copynumber: 2.5 Consensus size: 66
25810951 TCGTGTGACC
* * * * * * * * * *
25810961 CAAGTCAGTAACCTCCCTAGTTTTCCCATGGCCATGGCACACGGGTGTGTCTCCGGTCGTGTGGT
1 CAAGTCAGTGACATCCTTATTTTTCACACGGCTATGGCACACGGGCGTGTCTCCGGCCATGTGGT
25811026 A
66 A
* *
25811027 CAAGTCAGTGACCTCTTTAGTTTTTC-CACGGCTATGGCACACGGGCGTGTCTCCGGCCATGTGG
1 CAAGTCAGTGACATCCTTA-TTTTTCACACGGCTATGGCACACGGGCGTGTCTCCGGCCATGTGG
25811091 TA
65 TA
25811093 CAAGTCAGT-ATCTATGCCTT-TTTTTCACACGGCT
1 CAAGTCAGTGA-C-AT-CCTTATTTTTCACACGGCT
25811127 TTTGATACAG
Statistics
Matches: 84, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
65 1 0.01
66 67 0.80
67 13 0.15
68 3 0.04
ACGTcount: A:0.17, C:0.28, G:0.25, T:0.30
Consensus pattern (66 bp):
CAAGTCAGTGACATCCTTATTTTTCACACGGCTATGGCACACGGGCGTGTCTCCGGCCATGTGGT
A
Found at i:25816584 original size:9 final size:9
Alignment explanation
Indices: 25816566--25816596 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
25816556 AGAAAACTCC
*
25816566 TAAACAACT
1 TAAACTACT
25816575 TAAACTACT
1 TAAACTACT
25816584 TAAACTACT
1 TAAACTACT
25816593 TAAA
1 TAAA
25816597 AATTATCCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.29
Consensus pattern (9 bp):
TAAACTACT
Found at i:25819286 original size:40 final size:40
Alignment explanation
Indices: 25819207--25819383 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
25819197 AAACCAAGTA
* * * * *
25819207 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCCAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
25819246 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
25819286 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
25819326 CCTTCGGG-CTTAGCCC-GAAATTAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
25819365 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
25819384 TTATCATCCG
Statistics
Matches: 121, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
38 3 0.02
39 45 0.37
40 72 0.60
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:25819340 original size:79 final size:80
Alignment explanation
Indices: 25819207--25819383 Score: 227
Period size: 79 Copynumber: 2.2 Consensus size: 80
25819197 AAACCAAGTA
* * * * **
25819207 CCTTCGGAATTTAG-CCGGATATAGCTACTTGCTCCAATGCCTTCGGGACTTAGCCCG-GTTATA
1 CCTTCGGAACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGAAAT-TA
*
25819270 GTAACTCGCACAAATG
65 GTAACTAGCACAAATG
25819286 CCTTCGGAACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGAAATTA
1 CCTTCGGAACTTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTA
*
25819349 GTTACTAGCACAAATG
65 GTAACTAGCACAAATG
*
25819365 CCTTCGGGACTTAGCCCGG
1 CCTTCGGAACTTAGCCCGG
25819384 TTATCATCCG
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
79 57 0.66
80 29 0.34
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CCTTCGGAACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAG
TAACTAGCACAAATG
Found at i:25831283 original size:20 final size:20
Alignment explanation
Indices: 25831254--25831298 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
25831244 AGCACATGTA
* *
25831254 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
25831274 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
25831294 TTCAT
1 TTCAT
25831299 TTTCGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:25834815 original size:200 final size:201
Alignment explanation
Indices: 25834431--25834825 Score: 641
Period size: 200 Copynumber: 2.0 Consensus size: 201
25834421 ACGAGTGAAA
*
25834431 GATTTGGATGTGCCGAAAACAACATTTAGAACCAGGTACGGACACTATGAATTTCTTGTGATCCT
1 GATTTGGATGTGCCGAAAACAACATTGAGAACCAGGTACGGACACTATGAATTTCTTGTGATCCT
* *
25834496 GTTTGGTTTAACTGAAGCACCTCAAGTATTTTATGGATTTGATTAACAGAATCTTCAGACCGTAT
66 GTTTGGTTTAACTGAAGCACCTCAAGTATTTTATGGATTTGATGAACAAAATCTTCAGACCGTAT
*
25834561 TTAGACAGATTTGTTGTGGTATTTATTGATGATATTTTGATATATTCTTGAGATGAGACTAAACA
131 TTAGACAGATTTGTTGTGGTATTTATTGATGATATTTTGATATATTCTTGAGATGAAACTAAACA
25834626 ATGCTC
196 ATGCTC
** * * *
25834632 GATTTGGATGTGCTTAAAACTACATTGAGAACCAGGTCCGGACACTATGAATTTCTTGTGATGCT
1 GATTTGGATGTGCCGAAAACAACATTGAGAACCAGGTACGGACACTATGAATTTCTTGTGATCCT
*
25834697 GTTTGGTTTAACT-AATGCACCTCCAGTA-TTTATGGATTTGATGAACAAAATCTTCAGACCGTA
66 GTTTGGTTTAACTGAA-GCACCTCAAGTATTTTATGGATTTGATGAACAAAATCTTCAGACCGTA
* * * *
25834760 TTTAGATAGATTTTTTGTGGTATTTATTGATGATATTTTTATATATTCTTGAGATGAAACTGAAC
130 TTTAGACAGATTTGTTGTGGTATTTATTGATGATATTTTGATATATTCTTGAGATGAAACTAAAC
25834825 A
195 A
25834826 TGCCGAGCAT
Statistics
Matches: 179, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
200 96 0.54
201 83 0.46
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.37
Consensus pattern (201 bp):
GATTTGGATGTGCCGAAAACAACATTGAGAACCAGGTACGGACACTATGAATTTCTTGTGATCCT
GTTTGGTTTAACTGAAGCACCTCAAGTATTTTATGGATTTGATGAACAAAATCTTCAGACCGTAT
TTAGACAGATTTGTTGTGGTATTTATTGATGATATTTTGATATATTCTTGAGATGAAACTAAACA
ATGCTC
Found at i:25836080 original size:200 final size:200
Alignment explanation
Indices: 25835719--25836112 Score: 601
Period size: 200 Copynumber: 2.0 Consensus size: 200
25835709 ACGAGTGAAA
* *
25835719 GATTTGGATGTGCTGAAAACTACATTTAGAACCAGGTACGGACACTTTGAAATTCTTGTGATCCT
1 GATTTGGATGTGCTGAAAACTACATTTAGAACCAGGTACAGACACTATGAAATTCTTGTGATCCT
** **
25835784 GTTTGGTTTAACTAAAGCACCTCCAGTATTTTATGGATTTGATGAACAAAATCTTCAGACTTTTT
66 GTTTGGTTTAACTAAAGCACCTCCAGTATTTTATGGATTTGATGAACAAAATCTTCAGACCGTAG
25835849 TTAGACAGATTTGTTGTGGTATTACTGATGATATTTTGATATATTCTTGAGATGAGACTAAACAA
131 TTAGACAGATTTGTTGTGGTATTACTGATGATATTTTGATATATTCTTGAGATGAGACTAAACAA
25835914 TGCTC
196 TGCTC
* * ** *
25835919 GATTTGGATGTGCTTAAAACTACATTTAGAACCAGGTCCAGACACTATGAGTTTCTTGTGATGCT
1 GATTTGGATGTGCTGAAAACTACATTTAGAACCAGGTACAGACACTATGAAATTCTTGTGATCCT
* * *
25835984 GTTTGGTTTAACTAATGCACCTCTAGTA-TTTATGGATTTGATGAACAGAATCTTCAGACCGTAG
66 GTTTGGTTTAACTAAAGCACCTCCAGTATTTTATGGATTTGATGAACAAAATCTTCAGACCGTAG
* * * * *
25836048 TTAGATAGATTTTTTGTGGTATTTATTGATGATATTTTTATATATTCTTGAGATGAGACTGAACA
131 TTAGACAGATTTGTTGTGGTA-TTACTGATGATATTTTGATATATTCTTGAGATGAGACTAAACA
25836113 TGCCGAGCAT
Statistics
Matches: 174, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
199 50 0.29
200 124 0.71
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (200 bp):
GATTTGGATGTGCTGAAAACTACATTTAGAACCAGGTACAGACACTATGAAATTCTTGTGATCCT
GTTTGGTTTAACTAAAGCACCTCCAGTATTTTATGGATTTGATGAACAAAATCTTCAGACCGTAG
TTAGACAGATTTGTTGTGGTATTACTGATGATATTTTGATATATTCTTGAGATGAGACTAAACAA
TGCTC
Found at i:25836382 original size:57 final size:56
Alignment explanation
Indices: 25836294--25836407 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 56
25836284 ACCGTGAAAC
25836294 ATATCTGAAGTCAGAAGTTTTCTAGGATTAGCTGGTTATTACCAGATATTTGTAAA
1 ATATCTGAAGTCAGAAGTTTTCTAGGATTAGCTGGTTATTACCAGATATTTGTAAA
25836350 NATATCTGAAGTCAGAAGTTTTCTAGGATTAGCTGGTTATTACCAGATATTTGTAAA
1 -ATATCTGAAGTCAGAAGTTTTCTAGGATTAGCTGGTTATTACCAGATATTTGTAAA
25836407 A
1 A
25836408 AGGTTCTCGA
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
56 1 0.02
57 56 0.98
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.37
Consensus pattern (56 bp):
ATATCTGAAGTCAGAAGTTTTCTAGGATTAGCTGGTTATTACCAGATATTTGTAAA
Found at i:25837784 original size:40 final size:39
Alignment explanation
Indices: 25837747--25837838 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
25837737 GCTACTCGTT
*
25837747 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* *
25837787 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
25837826 CAAATGCCTTCGG
1 CAAATGCCTTCGG
25837839 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 33 0.69
40 15 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:25837818 original size:39 final size:40
Alignment explanation
Indices: 25837728--25837891 Score: 176
Period size: 40 Copynumber: 4.1 Consensus size: 40
25837718 CGGAATTTAA
** *
25837728 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
25837768 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
25837807 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
25837847 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
25837887 CCGGA
1 CCGGA
25837892 CATCATTCAA
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.30
40 58 0.55
41 12 0.11
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:25844877 original size:75 final size:75
Alignment explanation
Indices: 25844754--25844901 Score: 278
Period size: 75 Copynumber: 2.0 Consensus size: 75
25844744 CATTCTGGCC
25844754 CTGTTTCACGAGAACTTTAATATCTCTTAATACACTGTTCATATGATTGTTTCGTTACTTTCATA
1 CTGTTTCACGAGAACTTTAATATCTCTTAATACACTGTTCATATGATTGTTTCGTTACTTTCATA
25844819 TGAAAATACA
66 TGAAAATACA
* *
25844829 CTGTTTCACGAGACCTTTAATATCTCTTAATATACTGTTCATATGATTGTTTCGTTACTTTCATA
1 CTGTTTCACGAGAACTTTAATATCTCTTAATACACTGTTCATATGATTGTTTCGTTACTTTCATA
25844894 TGAAAATA
66 TGAAAATA
25844902 GATTCATCAA
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 71 1.00
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.43
Consensus pattern (75 bp):
CTGTTTCACGAGAACTTTAATATCTCTTAATACACTGTTCATATGATTGTTTCGTTACTTTCATA
TGAAAATACA
Found at i:25866983 original size:40 final size:40
Alignment explanation
Indices: 25866923--25867106 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 40
25866913 TATTCGAATG
*
25866923 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
** * *
25866963 ATATCCGAACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
25867003 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* *
25867043 ATATCCGGGCCAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
25867083 ATATCCGGGCTAAGA-CCTGAAGGC
1 ATATCCGGGCTAAGATCC-GAAGGC
25867107 CTTGTGCGAG
Statistics
Matches: 122, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 3 0.02
40 116 0.95
41 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:25867063 original size:80 final size:80
Alignment explanation
Indices: 25866923--25867106 Score: 237
Period size: 80 Copynumber: 2.3 Consensus size: 80
25866913 TATTCGAATG
* * * *
25866923 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGAACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGAACCAAGATCCGAAGGCA
* *
25866988 TTTGTGCGAGTTG-CT
66 TTTATGCGAG-TGACC
* **
25867003 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCCAAG-TCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGAACCAAGAT-CCGAAGGC
*
25867067 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
*
25867083 ATATCCGGGCTAAGACCTGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
25867107 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 3 0.03
80 88 0.97
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGAACCAAGATCCGAAGGCA
TTTATGCGAGTGACC
Found at i:25867411 original size:74 final size:74
Alignment explanation
Indices: 25867290--25867436 Score: 276
Period size: 74 Copynumber: 2.0 Consensus size: 74
25867280 ACAAGCTTCT
25867290 GGCTTTTAGTCAAGTTGATTCCTTATGTATGAATATAAGGGTTGGAAATGTGAAGTAGGTATGAT
1 GGCTTTTAGTCAAGTTGATTCCTTATGTATGAATATAAGGGTTGGAAATGTGAAGTAGGTATGAT
25867355 TCTGAGAAC
66 TCTGAGAAC
*
25867364 GGCTTTTAGTCAAGTTGATTCTTTATGTATGAATATAAGGGTTGGAAATGTGAAGTAGGTATGAT
1 GGCTTTTAGTCAAGTTGATTCCTTATGTATGAATATAAGGGTTGGAAATGTGAAGTAGGTATGAT
*
25867429 TGTGAGAA
66 TCTGAGAA
25867437 TATGTGTATA
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 71 1.00
ACGTcount: A:0.30, C:0.06, G:0.28, T:0.36
Consensus pattern (74 bp):
GGCTTTTAGTCAAGTTGATTCCTTATGTATGAATATAAGGGTTGGAAATGTGAAGTAGGTATGAT
TCTGAGAAC
Found at i:25870183 original size:27 final size:27
Alignment explanation
Indices: 25870152--25870240 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
25870142 CCAAAATTGA
*
25870152 TAAAATGACTATAATACCCCTGTAGGG
1 TAAAATGACCATAATACCCCTGTAGGG
* * *
25870179 TAAAATGACCATAATGCCCTTATAGGG
1 TAAAATGACCATAATACCCCTGTAGGG
* *
25870206 TAAAATGACCGTAATACCCCTGTATGG
1 TAAAATGACCATAATACCCCTGTAGGG
25870233 TAAAATGA
1 TAAAATGA
25870241 TGATTATGCC
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
TAAAATGACCATAATACCCCTGTAGGG
Found at i:25870235 original size:54 final size:54
Alignment explanation
Indices: 25870152--25870255 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 54
25870142 CCAAAATTGA
*
25870152 TAAAATGACTATAATACCCCTGTAGGGTAAAATGACCATAATGCCCTTATAGGG
1 TAAAATGACCATAATACCCCTGTAGGGTAAAATGACCATAATGCCCTTATAGGG
* * ** *
25870206 TAAAATGACCGTAATACCCCTGTATGGTAAAATGATGATTATGCCCTTAT
1 TAAAATGACCATAATACCCCTGTAGGGTAAAATGACCATAATGCCCTTAT
25870256 GCTCCGTGTG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (54 bp):
TAAAATGACCATAATACCCCTGTAGGGTAAAATGACCATAATGCCCTTATAGGG
Found at i:25870677 original size:32 final size:32
Alignment explanation
Indices: 25870618--25870679 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
25870608 GCTTAGGCCC
* * *
25870618 ACTCTGCTATTGTATAGGGCTGAAGCCCAGCT
1 ACTCTGCTACTGAATAAGGCTGAAGCCCAGCT
25870650 ACTCTGCTACTGAATAAGGCT-ACAGCCCAG
1 ACTCTGCTACTGAATAAGGCTGA-AGCCCAG
25870680 ACTGTTTTGC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 1 0.04
32 25 0.96
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (32 bp):
ACTCTGCTACTGAATAAGGCTGAAGCCCAGCT
Found at i:25876106 original size:27 final size:27
Alignment explanation
Indices: 25876076--25876253 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
25876066 ATATTGAGTC
* * * *
25876076 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
25876103 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
25876130 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
25876158 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
25876185 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
25876212 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
25876239 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
25876254 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:25876215 original size:82 final size:81
Alignment explanation
Indices: 25876097--25876252 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
25876087 TGCTATATAA
* *
25876097 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
25876162 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
25876179 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
25876243 CACTTAGTGC
65 CACTTAGTGC
25876253 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:25884170 original size:27 final size:27
Alignment explanation
Indices: 25884140--25884317 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
25884130 ATATTGAGTC
* * * *
25884140 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
25884167 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
25884194 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
25884222 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
25884249 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
25884276 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
25884303 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
25884318 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:25884279 original size:82 final size:81
Alignment explanation
Indices: 25884161--25884316 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
25884151 TGCTATATAA
* *
25884161 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
25884226 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
25884243 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
25884307 CACTTAGTGC
65 CACTTAGTGC
25884317 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:25889612 original size:27 final size:27
Alignment explanation
Indices: 25889528--25889867 Score: 224
Period size: 27 Copynumber: 12.6 Consensus size: 27
25889518 TATAGGGTAG
** *
25889528 AATTACTGAAATACCCTTG-TAGGGTAG
1 AATTACTGAAATACCCTTGAT-TTGTAA
* * ** *
25889555 AATTACTGAAATGCCATTG-TAGGGTAG
1 AATTACTGAAATACCCTTGAT-TTGTAA
* **
25889582 AATTACTGAAATACCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGATTTGTAA
* *
25889609 AATTACTG-AATACCGTAG-TTTGTAA
1 AATTACTGAAATACCCTTGATTTGTAA
*
25889634 AATTACTGAAATACCCTCGATTTGTAA
1 AATTACTGAAATACCCTTGATTTGTAA
** * * * * *
25889661 AATTACCAAAATGCCCCTGGTTTATGA
1 AATTACTGAAATACCCTTGATTTGTAA
* * *
25889688 AATTACCGAACTACCCTCGATTTGTAA
1 AATTACTGAAATACCCTTGATTTGTAA
* ** * *
25889715 AGTTACCAAAATACCCCTGATTTGGAA
1 AATTACTGAAATACCCTTGATTTGTAA
* * *
25889742 AATTACCGAAATACCCTAGATTTGGAA
1 AATTACTGAAATACCCTTGATTTGTAA
* * **
25889769 AATTACAGAAATACCCCTGATTTACAA
1 AATTACTGAAATACCCTTGATTTGTAA
**
25889796 AATTA-TAGAAATACCCTTGACTTTCAAA
1 AATTACT-GAAATACCCTTGA-TTTGTAA
* *
25889824 AATTA-TAGAAATACCATTGGTTTGTAA
1 AATTACT-GAAATACCCTTGATTTGTAA
*
25889851 AATCACTGAAATACCCT
1 AATTACTGAAATACCCT
25889868 AGGTTTATAG
Statistics
Matches: 251, Mismatches: 56, Indels: 12
0.79 0.18 0.04
Matches are distributed among these distances:
25 13 0.05
26 16 0.06
27 197 0.78
28 25 0.10
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGATTTGTAA
Found at i:25889853 original size:55 final size:53
Alignment explanation
Indices: 25889723--25889869 Score: 141
Period size: 55 Copynumber: 2.7 Consensus size: 53
25889713 AAAGTTACCA
* * * **
25889723 AAATACCCCTGATTTGGAAAATTACCGAAATACCCTAGATTTGGAAAATTACAG
1 AAATACCACTGATTTGCAAAATTA-TGAAATACCCTAGATTTCAAAAATTACAG
* * * *
25889777 AAATACCCCTGATTTACAAAATTATAGAAATACCCTTGACTTTCAAAAATTATAG
1 AAATACCACTGATTTGCAAAATTAT-GAAATACCCTAGA-TTTCAAAAATTACAG
* * * *
25889832 AAATACCATTGGTTTGTAAAATCACTGAAATACCCTAG
1 AAATACCACTGATTTGCAAAATTA-TGAAATACCCTAG
25889870 GTTTATAGAT
Statistics
Matches: 76, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
54 34 0.45
55 41 0.54
56 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (53 bp):
AAATACCACTGATTTGCAAAATTATGAAATACCCTAGATTTCAAAAATTACAG
Found at i:25889959 original size:27 final size:27
Alignment explanation
Indices: 25889929--25890006 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
25889919 CCCTAATAGA
* *
25889929 TAAAAAGATCGTAAGGCCCCTGTAGGG
1 TAAAAAGACCGTAAAGCCCCTGTAGGG
*
25889956 TAAAATGACCGTAAAGCCCCTGTAGGG
1 TAAAAAGACCGTAAAGCCCCTGTAGGG
**
25889983 TAAAGTGACCGTAATA-CCCCTGTA
1 TAAAAAGACCGTAA-AGCCCCTGTA
25890007 TTATAAAATG
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 45 0.98
28 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (27 bp):
TAAAAAGACCGTAAAGCCCCTGTAGGG
Found at i:25890013 original size:27 final size:27
Alignment explanation
Indices: 25889927--25890017 Score: 94
Period size: 27 Copynumber: 3.4 Consensus size: 27
25889917 ACCCCTAATA
* * *
25889927 GATAAAAAGATCGTAAGGCCCCTGTAG
1 GATAAAATGACCGTAAAGCCCCTGTAG
*
25889954 GGTAAAATGACCGTAAAGCCCCTGTAG
1 GATAAAATGACCGTAAAGCCCCTGTAG
* * *
25889981 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GATAAAATGACCGTAA-AGCCCCTGTAG
*
25890008 TATAAAATGA
1 GATAAAATGA
25890018 TGATTATGCC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
27 53 0.98
28 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (27 bp):
GATAAAATGACCGTAAAGCCCCTGTAG
Found at i:25890216 original size:27 final size:27
Alignment explanation
Indices: 25890186--25890238 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
25890176 CATTCGCTGT
25890186 TACTGGTACCTATGCCACAATTACTGA
1 TACTGGTACCTATGCCACAATTACTGA
** * *
25890213 TACTGGTGGCTTTGCCACATTTACTG
1 TACTGGTACCTATGCCACAATTACTG
25890239 TTTCTAATAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.34
Consensus pattern (27 bp):
TACTGGTACCTATGCCACAATTACTGA
Found at i:25892263 original size:28 final size:29
Alignment explanation
Indices: 25892209--25892263 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
25892199 ACAGGGGTTT
* *
25892209 TCACACAGCTTGGCACACGCCTGTGTCCC
1 TCACACAGCATGACACACGCCTGTGTCCC
25892238 TCACACAGCAATGACACAC-CC-GTGTC
1 TCACACAGC-ATGACACACGCCTGTGTC
25892264 TTAGGGGCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 5 0.22
29 11 0.48
30 7 0.30
ACGTcount: A:0.24, C:0.40, G:0.18, T:0.18
Consensus pattern (29 bp):
TCACACAGCATGACACACGCCTGTGTCCC
Found at i:25893334 original size:50 final size:49
Alignment explanation
Indices: 25893259--25893436 Score: 229
Period size: 48 Copynumber: 3.7 Consensus size: 49
25893249 GATGCCGACA
* *
25893259 CCATGTCCTAGACATGGTCTTACACTGGCTCTTATATATCG-GTGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTC-TATATATCGAGTG-CGATG
*
25893309 CCATGTCCCAGACATGGTCTTACACTAGCTCT-TATAT-GAATGCTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTATATATCGAGTGC-GATG
* * * * *
25893357 CCATGTTCCAAACATGGTCTTACACTGGCTC-ACATATCGAGGGCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTATATATCGAGTGCGATG
25893405 CCATGTCCCAGACATGGTCTTACACTAGCTCT
1 CCATGTCCCAGACATGGTCTTACACTAGCTCT
25893437 CATAACCCTA
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
47 2 0.02
48 75 0.68
49 5 0.05
50 29 0.26
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (49 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTCTATATATCGAGTGCGATG
Found at i:25903015 original size:48 final size:48
Alignment explanation
Indices: 25902951--25903084 Score: 155
Period size: 48 Copynumber: 2.8 Consensus size: 48
25902941 ATATCGGTGT
* * * * *
25902951 CGATGCCAT-TTCCCAAACATGGCCTTACACAAGCTCTTATATGAA-TG
1 CGATGCCATGTT-CCAAACATGGTCTTACACTAGCTCTCATATCAAGGG
* *
25902998 CTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAAGGG
1 C-GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCAAGGG
* *
25903047 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTC
25903085 CTAACCCTAG
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
47 1 0.01
48 68 0.93
49 4 0.05
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCAAGGG
Found at i:25911604 original size:46 final size:45
Alignment explanation
Indices: 25911524--25911881 Score: 237
Period size: 46 Copynumber: 7.7 Consensus size: 45
25911514 AAGTTATTAT
* * *
25911524 GAGCCAGTGTAAGACCATGTATGAGACATGGCATCGGCATTGATATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TTGAGATGA
* *
25911572 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTTCGAGAAGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTT-GAGATG-A
* * * * ** *
25911619 -AACCAATGTAAGACACGTCTGAGACATGCATCAACTACGAGAT--
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCT-TGAGATGA
* *
25911662 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TTGAGATGA
* ** *
25911710 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAACTTCGAGAAGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTT-GAGATG-A
* * * * * *
25911757 -AACCAATGTAAGACACGTCTGAGACATGCATCAAG-TACGAGAT--
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC-GGCT-TGAGATGA
* * *
25911800 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGTCTTGAGAT-A
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTTGAGATGA
* *
25911846 TAAACCAGTGTAAGACTATGTCTGGGACATGGCATC
1 -GAGCCAGTGTAAGAC-ATGTCTGGGACAT-GCATC
25911882 AACATTTTAC
Statistics
Matches: 240, Mismatches: 50, Indels: 41
0.73 0.15 0.12
Matches are distributed among these distances:
44 18 0.08
45 33 0.14
46 106 0.44
47 59 0.25
48 24 0.10
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.23
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTTGAGATGA
Found at i:25911776 original size:138 final size:138
Alignment explanation
Indices: 25911528--25911884 Score: 583
Period size: 138 Copynumber: 2.6 Consensus size: 138
25911518 TATTATGAGC
* * *
25911528 CAGTGTAAGACCATGTATGAGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACATGTCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCTAGTGTAAGACATGTCT
**
25911593 GGGACATGCATCGGCTTCGAGAAGTAAACCAATGTAAGACACGTCTGAGACATGCATCAACTACG
66 GGGACATGCATCAACTTCGAGAAGTAAACCAATGTAAGACACGTCTGAGACATGCATCAACTACG
25911658 AGATGTGT
131 AGATGTGT
25911666 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCTAGTGTAAGACATGTCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCTAGTGTAAGACATGTCT
*
25911731 GGGACATGCATCAACTTCGAGAAGTAAACCAATGTAAGACACGTCTGAGACATGCATCAAGTACG
66 GGGACATGCATCAACTTCGAGAAGTAAACCAATGTAAGACACGTCTGAGACATGCATCAACTACG
25911796 AGATGTGT
131 AGATGTGT
* * * *
25911804 CAGTGTAAGACCATGTCTGGGACATGGCATCGTC-TTGAGAT-ATAAACCAGTGTAAGACTATGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGA-GAGCTAGTGTAAGAC-ATGT
25911867 CTGGGACATGGCATCAAC
64 CTGGGACAT-GCATCAAC
25911885 ATTTTACCCC
Statistics
Matches: 206, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
136 1 0.00
137 19 0.09
138 178 0.86
139 8 0.04
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.23
Consensus pattern (138 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCTAGTGTAAGACATGTCT
GGGACATGCATCAACTTCGAGAAGTAAACCAATGTAAGACACGTCTGAGACATGCATCAACTACG
AGATGTGT
Found at i:25911799 original size:92 final size:92
Alignment explanation
Indices: 25911577--25911883 Score: 272
Period size: 92 Copynumber: 3.3 Consensus size: 92
25911567 TATGAGAGCT
* * * ** * *
25911577 AGTGTAAGACATGTCTGGGACAT-GCATC-GGCTTCGAGAAGTAAACCAATGTAAGACACGTCTG
1 AGTGTAAGACATGTCTGGGACATGGCATCAAGCATCGAG-A-TGAGGCAGTGTAAGACATGTCTG
* * * **
25911640 AGACATGCATCAACTACGAGATGT--GTC
64 GGACATGCATCAACTTCGAGAAGTAAACC
* *
25911667 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCATTGAGATGAGAGCTAGTGTAAGACATGTCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCAAGCATCGAGATGAG-GC-AGTGTAAGACATGTCT
25911731 GGGACATGCATCAACTTCGAGAAGTAAACC
63 GGGACATGCATCAACTTCGAGAAGTAAACC
* * * * * *
25911761 AATGTAAGACACGTCTGAGACAT-GCATCAAGTA-CGAGATGTGTCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGGCATCAAGCATCGAGATGAGGCAGTGTAAGA-CATGTCTGG
**
25911824 GACATGGCATCGTCTT-GAGATA-TAAACC
65 GACAT-GCATCAACTTCGAGA-AGTAAACC
25911852 AGTGTAAGACTATGTCTGGGACATGGCATCAA
1 AGTGTAAGAC-ATGTCTGGGACATGGCATCAA
25911884 CATTTTACCC
Statistics
Matches: 180, Mismatches: 25, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
90 20 0.11
91 50 0.28
92 80 0.44
93 21 0.12
94 9 0.05
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.23
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGGCATCAAGCATCGAGATGAGGCAGTGTAAGACATGTCTGGG
ACATGCATCAACTTCGAGAAGTAAACC
Found at i:25911850 original size:91 final size:92
Alignment explanation
Indices: 25911715--25911883 Score: 238
Period size: 91 Copynumber: 1.8 Consensus size: 92
25911705 GATGAGAGCT
25911715 AGTGTAAGACATGTCTGGGACATGCATCAACTTCGAGAAGTAAACCAATGTAAGAC-ACGTCTGA
1 AGTGTAAGACATGTCTGGGACATGCATCAACTTCGAGAAGTAAACCAATGTAAGACTACGTCTGA
25911779 GACAT-GCATCAAGTACGAGATGTGTC
66 GACATGGCATCAAGTACGAGATGTGTC
** * *
25911805 AGTGTAAGACCATGTCTGGGACATGGCATCGTCTT-GAGATA-TAAACCAGTGTAAGACTATGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAACTTCGAGA-AGTAAACCAATGTAAGACTACGTC
*
25911868 TGGGACATGGCATCAA
63 TGAGACATGGCATCAA
25911884 CATTTTACCC
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
90 9 0.13
91 33 0.48
92 20 0.29
93 7 0.10
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCAACTTCGAGAAGTAAACCAATGTAAGACTACGTCTGA
GACATGGCATCAAGTACGAGATGTGTC
Found at i:25924530 original size:40 final size:40
Alignment explanation
Indices: 25924405--25924562 Score: 124
Period size: 40 Copynumber: 3.8 Consensus size: 40
25924395 TCAATGATTT
* * *
25924405 GCCGAAGCCATTACAATCTCGCACACTTAGTGCCATTTCAATAA
1 GCCGAAGCTATTCCAA-CTCGCACACTTAGTGCCATTT--GT-A
* * *
25924449 ACCGAAGCTATCTCGATA-TCGCACACTTAGTGCC-TCATGTA
1 GCCGAAGCTAT-TCCA-ACTCGCACACTTAGTGCCAT-TTGTA
*
25924490 GCCGAAGCTATTCCAACTCGCACACTTAATGCCATTTGTA
1 GCCGAAGCTATTCCAACTCGCACACTTAGTGCCATTTGTA
*** *
25924530 GTTAAAGCTATTTCGAAC-CGCACACTTAGTGCC
1 GCCGAAGCTA-TTCCAACTCGCACACTTAGTGCC
25924563 GAACTTAATC
Statistics
Matches: 93, Mismatches: 15, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
39 1 0.01
40 43 0.46
41 18 0.19
42 1 0.01
43 1 0.01
44 26 0.28
45 2 0.02
46 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (40 bp):
GCCGAAGCTATTCCAACTCGCACACTTAGTGCCATTTGTA
Found at i:25934262 original size:20 final size:20
Alignment explanation
Indices: 25934237--25934276 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
25934227 TCTATTGAAA
*
25934237 TTGTAAATATATCGAACCCC
1 TTGTAAATATATCAAACCCC
25934257 TTGTAAATATATCAAACCCC
1 TTGTAAATATATCAAACCCC
25934277 GTAGGTAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.30
Consensus pattern (20 bp):
TTGTAAATATATCAAACCCC
Found at i:25962749 original size:20 final size:19
Alignment explanation
Indices: 25962712--25962768 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 19
25962702 CTTGTTTTAA
25962712 AAATAATTTAAC-TGATTG
1 AAATAATTTAACTTGATTG
25962730 ACAA-AATTCTAACTTGATTG
1 A-AATAATT-TAACTTGATTG
*
25962750 AAATCATTTTAACTTGATT
1 AAAT-AATTTAACTTGATT
25962769 TAAAAGTTGA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
18 5 0.15
19 8 0.24
20 17 0.52
21 3 0.09
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40
Consensus pattern (19 bp):
AAATAATTTAACTTGATTG
Found at i:25965178 original size:27 final size:27
Alignment explanation
Indices: 25965098--25965326 Score: 275
Period size: 27 Copynumber: 8.5 Consensus size: 27
25965088 TATAAACATA
*
25965098 TATCACAT-AGGGACAAAATAGTCATTC
1 TATCACATAAGGG-CAAAATAGTCATTT
* * *
25965125 TA-CTACATAAGGGCAACACAATCATTT
1 TATC-ACATAAGGGCAAAATAGTCATTT
* * * *
25965152 TACCATATGAGGGCAAAATAGTTATTT
1 TATCACATAAGGGCAAAATAGTCATTT
* *
25965179 TATCAAATAAGGG-AAAATTAGACATTT
1 TATCACATAAGGGCAAAA-TAGTCATTT
25965206 TATCACATAAGGGCAAAATAGTCATTT
1 TATCACATAAGGGCAAAATAGTCATTT
*
25965233 TATCACAAAAGGGCAAAATAGTCATTT
1 TATCACATAAGGGCAAAATAGTCATTT
* *
25965260 TATCAGATAAGGGTAAAATAGTCATTT
1 TATCACATAAGGGCAAAATAGTCATTT
*
25965287 TATCACATAAGGGAAAAATAGTCATTT
1 TATCACATAAGGGCAAAATAGTCATTT
*
25965314 TATCATATAAGGG
1 TATCACATAAGGG
25965327 GGTCCAGTGT
Statistics
Matches: 173, Mismatches: 24, Indels: 10
0.84 0.12 0.05
Matches are distributed among these distances:
26 5 0.03
27 159 0.92
28 9 0.05
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (27 bp):
TATCACATAAGGGCAAAATAGTCATTT
Found at i:25968950 original size:27 final size:27
Alignment explanation
Indices: 25968917--25969091 Score: 253
Period size: 27 Copynumber: 6.5 Consensus size: 27
25968907 TATAAAAATA
*
25968917 TATCACAT-AGAGGCAAAACAGTCATTT
1 TATCACATAAG-GGCAAAATAGTCATTT
* *
25968944 TACCACATAAGGGCAAAATAATCATTT
1 TATCACATAAGGGCAAAATAGTCATTT
* *
25968971 TACCACATGAGGGCAAAATAGTCATTT
1 TATCACATAAGGGCAAAATAGTCATTT
* *
25968998 TATCACATAAGGGCAAATTAGTCTTTT
1 TATCACATAAGGGCAAAATAGTCATTT
* *
25969025 TATCACATAAGGGAAAAATAATCATTT
1 TATCACATAAGGGCAAAATAGTCATTT
25969052 TATCACATAAGGGCAAAATAGTCATTT
1 TATCACATAAGGGCAAAATAGTCATTT
25969079 TATCACATAAGGG
1 TATCACATAAGGG
25969092 GTTCTAGTGT
Statistics
Matches: 132, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
27 130 0.98
28 2 0.02
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.29
Consensus pattern (27 bp):
TATCACATAAGGGCAAAATAGTCATTT
Found at i:25973810 original size:8 final size:8
Alignment explanation
Indices: 25973799--25973833 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
25973789 CTTTCTAACT
25973799 TTTCAGCC
1 TTTCAGCC
*
25973807 TTTCAGCT
1 TTTCAGCC
*
25973815 TTTCAGCT
1 TTTCAGCC
25973823 TTTCAGCC
1 TTTCAGCC
25973831 TTT
1 TTT
25973834 GTAGTTTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.11, C:0.29, G:0.11, T:0.49
Consensus pattern (8 bp):
TTTCAGCC
Found at i:25981234 original size:14 final size:14
Alignment explanation
Indices: 25981215--25981246 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
25981205 ATTTAAACAT
25981215 CTCATAAAATATAA
1 CTCATAAAATATAA
25981229 CTCATAAAATATAA
1 CTCATAAAATATAA
25981243 CTCA
1 CTCA
25981247 ATTCCATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.53, C:0.19, G:0.00, T:0.28
Consensus pattern (14 bp):
CTCATAAAATATAA
Found at i:25982042 original size:46 final size:46
Alignment explanation
Indices: 25981975--25982149 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
25981965 TGTAACCCGC
25981975 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACAT
25982021 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTCACAT
* * * * *
25982071 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACAT
*
25982114 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
25982150 ATGCCCAAAT
Statistics
Matches: 111, Mismatches: 7, Indels: 22
0.79 0.05 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.05
44 1 0.01
46 63 0.57
47 26 0.23
48 1 0.01
49 1 0.01
50 7 0.06
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACAT
Found at i:25982095 original size:93 final size:93
Alignment explanation
Indices: 25981983--25982154 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
25981973 GCCCATAAGT
* *
25981983 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
25982048 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
25982076 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
25982141 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
25982155 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:25985859 original size:42 final size:42
Alignment explanation
Indices: 25985742--25985859 Score: 130
Period size: 43 Copynumber: 2.8 Consensus size: 42
25985732 ATTCCAATGT
* * *
25985742 CATATCCCAAATATGGTCTTACATGTAATCTCGTATCGATAC
1 CATATCCCAGATATGGTCTTACACGTAATCTCATATCGATAC
* * * *
25985784 CAATAGCCCAGCTATGGTCTTACACG-AAGTCTCATATTGATGC
1 C-ATATCCCAGATATGGTCTTACACGTAA-TCTCATATCGATAC
* *
25985827 CATATCCTAGATATGGTCTTATACGTAATCTCA
1 CATATCCCAGATATGGTCTTACACGTAATCTCA
25985860 GTAACCCAAA
Statistics
Matches: 62, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 28 0.45
43 34 0.55
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGTAATCTCATATCGATAC
Found at i:25989297 original size:43 final size:43
Alignment explanation
Indices: 25989207--25989318 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 43
25989197 ACAGAGATGT
* * *
25989207 GATTACATGTAAGACTATGTCTGGGACATTGGCATTGTATTAA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAGTAA
* * *
25989250 GATTACATGTAAGACCATGTATGGGACATTGGGATCGTTAGT-C
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TAGTAA
* *
25989293 GATTACGTGTAAGACCTTGTCTGGGA
1 GATTACATGTAAGACCATGTCTGGGA
25989319 TAGTGTAATA
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 56 0.95
44 3 0.05
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAGTAA
Found at i:25991622 original size:25 final size:25
Alignment explanation
Indices: 25991583--25991631 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
25991573 TTTTATTATA
*
25991583 ACATATATTAACTTATTATTTAATT
1 ACATATATTAACTTATTATATAATT
25991608 ACATAT-TTAACCTTATTATATAAT
1 ACATATATTAA-CTTATTATATAAT
25991632 ATGATTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (25 bp):
ACATATATTAACTTATTATATAATT
Found at i:25998357 original size:34 final size:32
Alignment explanation
Indices: 25998261--25998362 Score: 98
Period size: 34 Copynumber: 3.1 Consensus size: 32
25998251 TATGCATTTA
* * *
25998261 TGATACTGTACTGAAATGGGCTACGCCTACAC
1 TGATACTGTACTGATATGGGCTAAGCCCACAC
*
25998293 TTATACTGTTACTG-TATTGGGCTAAGGCCCACAC
1 TGATACTG-TACTGATA-TGGGCTAA-GCCCACAC
* *
25998327 TGATACTGCGACTGATATGGGCTTAAGCCCAGAC
1 TGATACTG-TACTGATATGGGC-TAAGCCCACAC
25998361 TG
1 TG
25998363 TTCAACACTG
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
32 8 0.14
33 12 0.21
34 32 0.56
35 5 0.09
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (32 bp):
TGATACTGTACTGATATGGGCTAAGCCCACAC
Found at i:25999414 original size:21 final size:22
Alignment explanation
Indices: 25999390--25999434 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
25999380 TCATATTATT
* *
25999390 CATAATATAACATA-ATTAAAA
1 CATAATACAACATATATCAAAA
*
25999411 CATAATCCAACATATATCAAAA
1 CATAATACAACATATATCAAAA
25999433 CA
1 CA
25999435 AATTTATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.58, C:0.18, G:0.00, T:0.24
Consensus pattern (22 bp):
CATAATACAACATATATCAAAA
Found at i:26005159 original size:25 final size:25
Alignment explanation
Indices: 26005120--26005168 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
26005110 TTTTATTATA
26005120 ACATATATTAACTTATAATTTAATT
1 ACATATATTAACTTATAATTTAATT
*
26005145 ACATAT-TTAACCTTATTATTTAAT
1 ACATATATTAA-CTTATAATTTAAT
26005169 ACGATTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (25 bp):
ACATATATTAACTTATAATTTAATT
Found at i:26010251 original size:25 final size:25
Alignment explanation
Indices: 26010217--26010266 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
26010207 AGCATGATAG
26010217 TATGATTGTGTGAAAATTTAGTTAA
1 TATGATTGTGTGAAAATTTAGTTAA
*
26010242 TATGATTGTGTGAATATTTAGTTAA
1 TATGATTGTGTGAAAATTTAGTTAA
26010267 GGAATTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (25 bp):
TATGATTGTGTGAAAATTTAGTTAA
Found at i:26014134 original size:19 final size:19
Alignment explanation
Indices: 26014102--26014147 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
26014092 ACAACATATT
* * *
26014102 ATAATGTCACATTATTTAC
1 ATAATATCAAATTATTCAC
26014121 ATAATATCAAATTATTCAC
1 ATAATATCAAATTATTCAC
26014140 ATATATAT
1 ATA-ATAT
26014148 ACTTAAAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.43, C:0.13, G:0.02, T:0.41
Consensus pattern (19 bp):
ATAATATCAAATTATTCAC
Found at i:26026678 original size:15 final size:15
Alignment explanation
Indices: 26026658--26026686 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26026648 ATGCTTCACA
26026658 CACCGTGTTATCAAT
1 CACCGTGTTATCAAT
26026673 CACCGTGTTATCAA
1 CACCGTGTTATCAA
26026687 GCAACAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (15 bp):
CACCGTGTTATCAAT
Found at i:26032555 original size:27 final size:27
Alignment explanation
Indices: 26032525--26032702 Score: 153
Period size: 27 Copynumber: 6.6 Consensus size: 27
26032515 TTATTGAGCC
* * *
26032525 CGCACACTCACTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
26032552 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
26032579 CGCACACTTAGTGCCACATAGTCCAACT
1 CGCACACTTAGTGCTACATAAT-CAACT
** ** *
26032607 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
26032634 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
26032661 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
*
26032688 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
26032703 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 101 0.80
28 26 0.20
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:26032610 original size:55 final size:55
Alignment explanation
Indices: 26032547--26032701 Score: 179
Period size: 55 Copynumber: 2.8 Consensus size: 55
26032537 GCTATATAAT
* * *
26032547 CAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCCA-CATAGTC
1 CAACTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCATCATA-TC
** * * *
26032602 CAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTG-CATCATATT
1 CAACTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCATCATATC
** * *
26032656 CATTTCGCACACTTAGTGCAACATAGTCGAATCGCACCCTTAGTGC
1 CAACTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGC
26032702 TGTACAATTT
Statistics
Matches: 83, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 40 0.48
55 43 0.52
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (55 bp):
CAACTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCATCATATC
Found at i:26032666 original size:82 final size:81
Alignment explanation
Indices: 26032546--26032701 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
26032536 TGCTATATAA
* *
26032546 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCCACATAGTCCAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCCAA-TCGCA
26032611 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
26032628 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCCAATCGCA
*
26032692 CCCTTAGTGC
65 CACTTAGTGC
26032702 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCCAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26041461 original size:45 final size:45
Alignment explanation
Indices: 26041397--26041537 Score: 209
Period size: 43 Copynumber: 3.2 Consensus size: 45
26041387 CCAAAACATG
* * * *
26041397 TGTCACATATATCACGAACTCAAACCACTACTCAATGAGTTCGGA
1 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGA
26041442 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGA
*
26041487 T-T-ACATAGATCATGAACTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGA
26041530 --TCACATAT
1 TGTCACATAT
26041538 TTCCTAGTGA
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
42 1 0.01
43 45 0.51
44 1 0.01
45 42 0.47
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.25
Consensus pattern (45 bp):
TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGA
Found at i:26041470 original size:22 final size:21
Alignment explanation
Indices: 26041445--26041513 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 21
26041435 GTTCGGATGT
26041445 CACATATATCATGAACTCAGAC
1 CACATA-ATCATGAACTCAGAC
* ** *
26041467 CACA-ACTCAATGAGTTCAGAT
1 CACATAATC-ATGAACTCAGAC
*
26041488 TACATAGATCATGAACTCAGAC
1 CACATA-ATCATGAACTCAGAC
26041510 CACA
1 CACA
26041514 ACTCAATGAG
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
20 2 0.06
21 13 0.38
22 17 0.50
23 2 0.06
ACGTcount: A:0.41, C:0.26, G:0.12, T:0.22
Consensus pattern (21 bp):
CACATAATCATGAACTCAGAC
Found at i:26041528 original size:21 final size:21
Alignment explanation
Indices: 26041461--26041534 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 21
26041451 TATCATGAAC
26041461 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
** * **
26041482 TCAGATTACATAGATC-ATGAAC
1 TCAGACCACA-A-CTCAATGAGT
26041504 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
*
26041525 TCAGATCACA
1 TCAGACCACA
26041535 TATTTCCTAG
Statistics
Matches: 39, Mismatches: 11, Indels: 6
0.70 0.20 0.11
Matches are distributed among these distances:
20 2 0.05
21 22 0.56
22 13 0.33
23 2 0.05
ACGTcount: A:0.39, C:0.26, G:0.14, T:0.22
Consensus pattern (21 bp):
TCAGACCACAACTCAATGAGT
Found at i:26046898 original size:68 final size:67
Alignment explanation
Indices: 26046826--26047009 Score: 248
Period size: 68 Copynumber: 2.7 Consensus size: 67
26046816 CATCATGTGT
* * * *
26046826 ACAAGAAGGCTAC-GAGATACTATATAGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCGT
1 ACAAGAAGGCTACGGAGAGA-TAAAT-GTAGCTAGGTCACATGTGTGATACAGGATGTATCCCAT
26046890 GTAG
64 GTAG
26046894 ACAAGAGAGG-TACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATACAGGATGTATCCCAT
1 ACAAGA-AGGCTACG-GAGAGATAAATGTAGCTAGGTCACATGTGTGATACAGGATGTATCCCAT
26046958 GTAG
64 GTAG
*
26046962 ACAAG-AGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGAGTGAT
1 ACAAGAAG-GCTACG-GAGAGATAAATGTAGCTAGGTCACATGTGTGAT
26047010 TCCAAGTGAA
Statistics
Matches: 106, Mismatches: 5, Indels: 10
0.88 0.04 0.08
Matches are distributed among these distances:
66 2 0.02
67 1 0.01
68 91 0.86
69 7 0.07
70 5 0.05
ACGTcount: A:0.34, C:0.14, G:0.29, T:0.23
Consensus pattern (67 bp):
ACAAGAAGGCTACGGAGAGATAAATGTAGCTAGGTCACATGTGTGATACAGGATGTATCCCATGT
AG
Found at i:26049069 original size:16 final size:16
Alignment explanation
Indices: 26049045--26049080 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
26049035 ATGACTTCTC
26049045 TTTTAAATTTTTGTTGA
1 TTTTAAATTTTTGTT-A
26049062 TTTT-AATTTTTGTTA
1 TTTTAAATTTTTGTTA
26049077 TTTT
1 TTTT
26049081 TTTTATTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.26
16 10 0.53
17 4 0.21
ACGTcount: A:0.19, C:0.00, G:0.08, T:0.72
Consensus pattern (16 bp):
TTTTAAATTTTTGTTA
Found at i:26051519 original size:40 final size:39
Alignment explanation
Indices: 26051460--26051637 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 39
26051450 TGGATGATAA
* * *
26051460 CCGGGCTAAGTCCCAAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTA-TAT
26051500 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
26051540 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
26051580 CCGGGCTATGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAT
* *
26051620 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
26051638 TACTTGGCTT
Statistics
Matches: 125, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
39 16 0.13
40 108 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:26053580 original size:55 final size:55
Alignment explanation
Indices: 26053467--26053587 Score: 129
Period size: 55 Copynumber: 2.2 Consensus size: 55
26053457 TGCCCTTTAG
* *
26053467 CCGTGGGCAACACTGACTTATCAACACGGCCATGGCACACACCCATGCTGCATGC
1 CCGTGGACAACACTGACTTATCAACACGGCCATGGCACACACCCATGCTGCATAC
* * ** * *
26053522 CCGTGGACGACACTGTCTT-TCAAACACGGCCATGGTGCACGCCCATG-TGGCTTAC
1 CCGTGGACAACACTGACTTATC-AACACGGCCATGGCACACACCCATGCT-GCATAC
*
26053577 CCGTGTACAAC
1 CCGTGGACAAC
26053588 TTTGAGCTAA
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
54 3 0.06
55 51 0.94
ACGTcount: A:0.23, C:0.35, G:0.23, T:0.19
Consensus pattern (55 bp):
CCGTGGACAACACTGACTTATCAACACGGCCATGGCACACACCCATGCTGCATAC
Done.