Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 80 of 167
Found at i:26054999 original size:23 final size:23
Alignment explanation
Indices: 26054971--26055014 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
26054961 CATGCTAATA
26054971 ATAAATGCAATC-ATCATGCATTC
1 ATAAAT-CAATCAATCATGCATTC
*
26054994 ATAAATCAATCAATTATGCAT
1 ATAAATCAATCAATCATGCAT
26055015 ATTAGGGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32
Consensus pattern (23 bp):
ATAAATCAATCAATCATGCATTC
Found at i:26058319 original size:40 final size:40
Alignment explanation
Indices: 26058262--26058530 Score: 378
Period size: 40 Copynumber: 6.8 Consensus size: 40
26058252 GATGATAACT
* *
26058262 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTACATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCC
*
26058302 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCC
*
26058342 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCC
* * *
26058382 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTACTTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCC
* * * * *
26058422 GGGTTAAGTTCGGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCC
* * *
26058462 GGGCTAAGTCCCGAAGGCAATGGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCC
* *
26058502 GGGCTATGTCCCGAAGGCA-TTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
26058531 AGCTATATCC
Statistics
Matches: 205, Mismatches: 24, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
39 8 0.04
40 197 0.96
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCC
Found at i:26058475 original size:120 final size:120
Alignment explanation
Indices: 26058262--26058530 Score: 423
Period size: 120 Copynumber: 2.2 Consensus size: 120
26058252 GATGATAACT
26058262 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTGTG
* * *
26058327 CGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCC
66 CGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAATGGTGCGAGTTACTACATCC
* * * *
26058382 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTACTTCCGGGTTAAGTTCGGAAGGCATTTGTG
1 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTGTG
* *
26058447 TGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAATGGTGCGAGTTACTATATCC
66 CGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAATGGTGCGAGTTACTACATCC
* * *
26058502 GGGCTATGTCCCGAAGGCA-TTGAGCGAGT
1 GGGCTAAGTCCCAAAGGCATTTGTGCGAGT
26058531 AGCTATATCC
Statistics
Matches: 137, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
119 9 0.07
120 128 0.93
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (120 bp):
GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTGTG
CGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAATGGTGCGAGTTACTACATCC
Found at i:26061077 original size:9 final size:9
Alignment explanation
Indices: 26061053--26061083 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
26061043 TCAAATCTGT
26061053 TTCATCTTC
1 TTCATCTTC
26061062 TTC-TCTTC
1 TTCATCTTC
26061070 TTCATCTTC
1 TTCATCTTC
26061079 TTCAT
1 TTCAT
26061084 TGGTTGCTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.10, C:0.32, G:0.00, T:0.58
Consensus pattern (9 bp):
TTCATCTTC
Found at i:26071980 original size:49 final size:49
Alignment explanation
Indices: 26071860--26072411 Score: 868
Period size: 49 Copynumber: 11.6 Consensus size: 49
26071850 CCCTTCGGGA
* * * *
26071860 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTC-GCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCAC-ATCGGCCATTAGGC
* *
26071907 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26071954 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26072003 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26072052 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26072101 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26072150 CTTATCACATATATATACACTTT---A--CAT----T-GGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26072189 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26072238 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26072285 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26072334 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26072383 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
26072412 TATTCAAATA
Statistics
Matches: 474, Mismatches: 14, Indels: 32
0.91 0.03 0.06
Matches are distributed among these distances:
39 33 0.07
40 1 0.00
42 1 0.00
44 6 0.01
46 4 0.01
47 86 0.18
48 1 0.00
49 342 0.72
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26072432 original size:184 final size:179
Alignment explanation
Indices: 26071987--26072411 Score: 573
Period size: 184 Copynumber: 2.3 Consensus size: 179
26071977 CACATTCATC
*
26071987 ACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC-ATCGGCCATTAGG
1 ACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAAT----CATT--G
*
26072051 CCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
60 ACTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
26072116 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTT
123 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTT
* * *
26072173 ACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 ACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAAT---CATT--GA
26072238 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
61 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
26072303 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCAT
126 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT--A----CAC-TT--T
26072366 CACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
1 -ACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
26072412 TATTCAAATA
Statistics
Matches: 221, Mismatches: 7, Indels: 14
0.91 0.03 0.06
Matches are distributed among these distances:
184 102 0.46
186 68 0.31
187 1 0.00
190 3 0.01
191 2 0.01
193 1 0.00
194 44 0.20
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (179 bp):
ACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAATCATTGACTTAT
CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTT
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTT
Found at i:26072432 original size:233 final size:232
Alignment explanation
Indices: 26071955--26072411 Score: 799
Period size: 233 Copynumber: 2.0 Consensus size: 232
26071945 CCATTAGGCC
26071955 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATA
26072020 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
65 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
26072085 ACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
130 ACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
26072150 CTTATCACATATATATACACTTTACATTGGCCATTCGGCC
195 CTTATCACATATATATACACTTTACATT-G-CATTCGAAA
* *
26072190 TTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC-ATATATAC
1 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATAC
26072254 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
* * *
26072319 CATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCC
131 CATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
26072384 TTATCACATATATATACACTTTCACATT
196 TTATCACATATATATACACTTT-ACATT
26072412 TATTCAAATA
Statistics
Matches: 216, Mismatches: 5, Indels: 3
0.96 0.02 0.01
Matches are distributed among these distances:
233 157 0.73
234 5 0.02
235 54 0.25
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (232 bp):
TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
CATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
TTATCACATATATATACACTTTACATTGCATTCGAAA
Found at i:26075034 original size:14 final size:14
Alignment explanation
Indices: 26075015--26075043 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26075005 CACTTGGTAC
26075015 TTTGAAGTGTTTGT
1 TTTGAAGTGTTTGT
26075029 TTTGAAGTGTTTGT
1 TTTGAAGTGTTTGT
26075043 T
1 T
26075044 CTTTGGGTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.28, T:0.59
Consensus pattern (14 bp):
TTTGAAGTGTTTGT
Found at i:26078826 original size:21 final size:21
Alignment explanation
Indices: 26078800--26078841 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
26078790 CAAAACAACG
*
26078800 TGGTTTTGCCTTTTAACTTTA
1 TGGTTTTGACTTTTAACTTTA
26078821 TGGTTTTGACTTTTAACTTTA
1 TGGTTTTGACTTTTAACTTTA
26078842 GAAAATGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.17, C:0.12, G:0.14, T:0.57
Consensus pattern (21 bp):
TGGTTTTGACTTTTAACTTTA
Found at i:26082527 original size:14 final size:14
Alignment explanation
Indices: 26082508--26082549 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
26082498 TGCATGATTG
26082508 TATGAAAGTTTCAT
1 TATGAAAGTTTCAT
26082522 TATGAAAGTTTCAT
1 TATGAAAGTTTCAT
*
26082536 TAAGAAA-TTTCAT
1 TATGAAAGTTTCAT
26082549 T
1 T
26082550 GATAGAGTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
13 7 0.26
14 20 0.74
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.43
Consensus pattern (14 bp):
TATGAAAGTTTCAT
Found at i:26086745 original size:42 final size:40
Alignment explanation
Indices: 26086594--26086746 Score: 135
Period size: 42 Copynumber: 3.7 Consensus size: 40
26086584 TGATTTTACG
* * *
26086594 TGTAAGAGCATATCTGGGATATGGCATCGTTATGAGATTTTG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGA--TTA
* * * *
26086636 TGTCAGACCATGTTTGGGACATGGCATCGATATGAGAATTA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAG-ATTA
* * * * *
26086677 TGTAAGACCATAACTGAGCTATTGGCATCGATATGTGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGAT--TA
*
26086720 TGTAAGACTATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
26086747 TGGTATGTTT
Statistics
Matches: 87, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
41 18 0.21
42 50 0.57
43 19 0.22
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (40 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTA
Found at i:26094678 original size:46 final size:43
Alignment explanation
Indices: 26094578--26094707 Score: 154
Period size: 46 Copynumber: 2.9 Consensus size: 43
26094568 TAGTATATTT
26094578 GTACCGATGCCATGTCCCAGACATATTCTTACACT-GACACATATC
1 GTACCGATG-CATGTCCCAGACATA-TCTTACACTAG-CACATATC
*
26094623 GTAGCCGATGCATGTCCCAGACATATCTTACACTAGCTTACATCTC
1 GTA-CCGATGCATGTCCCAGACATATCTTACACTAGC--ACATATC
* * *
26094669 GTGACCGATGCATGTCCTAGACATGTCTTACATTAGCAC
1 GT-ACCGATGCATGTCCCAGACATATCTTACACTAGCAC
26094708 TCGTCTTATT
Statistics
Matches: 76, Mismatches: 4, Indels: 11
0.84 0.04 0.12
Matches are distributed among these distances:
44 12 0.16
45 19 0.25
46 44 0.58
47 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (43 bp):
GTACCGATGCATGTCCCAGACATATCTTACACTAGCACATATC
Found at i:26096818 original size:19 final size:19
Alignment explanation
Indices: 26096781--26096818 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
26096771 CAACTCAGAA
*
26096781 TTGCACACGGTTTGAGCAC
1 TTGCACACGGTGTGAGCAC
26096800 TTGCACACGGGTGTG-GCAC
1 TTGCACAC-GGTGTGAGCAC
26096819 AGGTCATGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (19 bp):
TTGCACACGGTGTGAGCAC
Found at i:26107012 original size:48 final size:48
Alignment explanation
Indices: 26106924--26107022 Score: 144
Period size: 48 Copynumber: 2.1 Consensus size: 48
26106914 GGAGGAAAAG
** *
26106924 TCCCTGTTGAAGAGTAGATCATTCATAATAAAGTGGAGTTGCATGTAA
1 TCCCTGTTGAAGAGTAGATCATTCATAATAAAGCAGAGTTGCATGCAA
* * *
26106972 TCCCTGTTTAAGAGTAGATCATTCATAATTAAGCATAGTTGCATGCAA
1 TCCCTGTTGAAGAGTAGATCATTCATAATAAAGCAGAGTTGCATGCAA
26107020 TCC
1 TCC
26107023 TAGAGATAGG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (48 bp):
TCCCTGTTGAAGAGTAGATCATTCATAATAAAGCAGAGTTGCATGCAA
Found at i:26109837 original size:38 final size:38
Alignment explanation
Indices: 26109795--26109870 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
26109785 ATTGATACTT
*
26109795 CGTGTAGGTGATGACACGATTAAGCTTCAAGCTCGTGA
1 CGTGTAGGGGATGACACGATTAAGCTTCAAGCTCGTGA
* ***
26109833 CGTGTAGGGGATGACATGATTACTTTTCAAGCTCGTGA
1 CGTGTAGGGGATGACACGATTAAGCTTCAAGCTCGTGA
26109871 TTCTGCAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (38 bp):
CGTGTAGGGGATGACACGATTAAGCTTCAAGCTCGTGA
Found at i:26113874 original size:48 final size:48
Alignment explanation
Indices: 26113815--26114161 Score: 507
Period size: 48 Copynumber: 7.1 Consensus size: 48
26113805 GCTGAAATTG
* *
26113815 ATGTATAAGATATGTATATGTGGTAAAGCCGAATTGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
26113863 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* * *
26113913 ATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
*
26113963 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* * *
26114011 ATGTATGAGATATGCATCTATGGTAAAGCCGAATGG-TCAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-AT
* *
26114061 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
26114109 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
26114157 ATGTA
1 ATGTA
26114162 GGCGATGTGT
Statistics
Matches: 274, Mismatches: 19, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
47 1 0.00
48 135 0.49
49 8 0.03
50 129 0.47
51 1 0.00
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:26113941 original size:50 final size:50
Alignment explanation
Indices: 26113822--26114158 Score: 508
Period size: 50 Copynumber: 6.9 Consensus size: 50
26113812 TTGATGTATA
* *
26113822 AGATATGTATATGTGGTAAAGCCGAATTGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
26113870 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
26113920 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
26113970 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* * *
26114018 AGATATGCATCTATGGTAAAGCCGAATGG-TCAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATG
* *
26114068 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
26114116 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
26114159 GTAGGCGATG
Statistics
Matches: 263, Mismatches: 18, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
47 1 0.00
48 120 0.46
49 10 0.04
50 131 0.50
51 1 0.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.32
Consensus pattern (50 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
Found at i:26114177 original size:98 final size:98
Alignment explanation
Indices: 26113815--26114158 Score: 532
Period size: 98 Copynumber: 3.5 Consensus size: 98
26113805 GCTGAAATTG
* * *
26113815 ATGTATAAGATATGTATATGTGGTAAAGCCGAATTGCTAATGTG-AA-ATATGTATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
*
26113878 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATAT
66 ATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* * *
26113913 ATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
26113978 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* * *
26114011 ATGTATGAGATATGCATCTATGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATGAGATATG
*
26114075 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
65 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
26114109 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
26114159 GTAGGCGATG
Statistics
Matches: 225, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
97 1 0.00
98 175 0.78
99 5 0.02
100 44 0.20
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.32
Consensus pattern (98 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:26114416 original size:37 final size:37
Alignment explanation
Indices: 26114311--26114416 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
26114301 AATATATTCT
*
26114311 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
26114348 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
* * *
26114385 GGGTAAGACTCGATAACTTCGTGTGGAGATTT
1 GGGTAAGACCCGATGACTACGTGTGGAGATTT
26114417 CATCTGAGCT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
Found at i:26118106 original size:30 final size:30
Alignment explanation
Indices: 26118072--26118128 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
26118062 TAGGCACTTC
*
26118072 CACACGGGTAAACCACACGCCCGTGTGAGG
1 CACACGGGCAAACCACACGCCCGTGTGAGG
26118102 CACACGGGCAAACCACACGCCCGTGTG
1 CACACGGGCAAACCACACGCCCGTGTG
26118129 TCATGGCCGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.26, C:0.37, G:0.28, T:0.09
Consensus pattern (30 bp):
CACACGGGCAAACCACACGCCCGTGTGAGG
Found at i:26126355 original size:28 final size:28
Alignment explanation
Indices: 26126312--26126375 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
26126302 TAGGAAGTAG
* *
26126312 TTGGGCCTGATAGGCCATATGAATGTGA
1 TTGGGCCTGATAGGCCATATGAACGAGA
* *
26126340 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATAGGCCATATGAACGAGA
26126368 TTGGGCCT
1 TTGGGCCT
26126376 AAAGGGGCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.20, C:0.17, G:0.36, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATAGGCCATATGAACGAGA
Found at i:26126722 original size:27 final size:27
Alignment explanation
Indices: 26126692--26126869 Score: 164
Period size: 27 Copynumber: 6.6 Consensus size: 27
26126682 TAATAAAGAG
* *
26126692 AAATTACCGAAGTACCCCCGATTTATA
1 AAATTACCGAAATACCCCCGATTTGTA
*
26126719 AAATTATCGAAATACCCCC-AGTTTGTA
1 AAATTACCGAAATACCCCCGA-TTTGTA
**
26126746 AAATTACCGAAATACCCCTAATTTGTA
1 AAATTACCGAAATACCCCCGATTTGTA
* *
26126773 AAATTACCGAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCCCGATTTGTA
* ** * *
26126799 AAACTACTAAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCCCGATTTGTA
* ** *
26126826 AAATTATCGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCCCGAT-TTGTA
*
26126853 AAATTATCGAAATACCC
1 AAATTACCGAAATACCC
26126870 TTGTAGTGTA
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
26 23 0.18
27 102 0.81
28 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCGAAATACCCCCGATTTGTA
Found at i:26126775 original size:54 final size:53
Alignment explanation
Indices: 26126692--26126869 Score: 187
Period size: 54 Copynumber: 3.3 Consensus size: 53
26126682 TAATAAAGAG
* ** *
26126692 AAATTACCGAAGTACCCCCGATTTATAAAATTATCGAAATACCCCCAGTTTGTA
1 AAATTACCGAAATACCCCTAATTTGTAAAATTATCGAAATACCCCC-GTTTGTA
* * * *
26126746 AAATTACCGAAATACCCCTAATTTGTAAAATTACCGAAATACCCTCGATTGTG
1 AAATTACCGAAATACCCCTAATTTGTAAAATTATCGAAATACCCCCGTTTGTA
* ** ** *
26126799 AAACTACTAAAATA-CCCTCAATTTGTAAAATTATCGAAATACCCTTGTAGTGTA
1 AAATTACCGAAATACCCCT-AATTTGTAAAATTATCGAAATACCCCCGT-TTGTA
*
26126853 AAATTATCGAAATACCC
1 AAATTACCGAAATACCC
26126870 TTGTAGTGTA
Statistics
Matches: 101, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
52 4 0.04
53 42 0.42
54 53 0.52
55 2 0.02
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (53 bp):
AAATTACCGAAATACCCCTAATTTGTAAAATTATCGAAATACCCCCGTTTGTA
Found at i:26126827 original size:53 final size:54
Alignment explanation
Indices: 26126712--26126843 Score: 169
Period size: 53 Copynumber: 2.5 Consensus size: 54
26126702 AGTACCCCCG
* * * * *
26126712 ATTTATAAAATTATCGAAATACCCCCAGTTTGTAAAATTACCGAAATACCCCTA
1 ATTTGTAAAATTATCGAAATACCCTCAGATTGTAAAACTACCAAAATACCCCTA
* * *
26126766 ATTTGTAAAATTACCGAAATACCCTC-GATTGTGAAACTACTAAAATA-CCCTCA
1 ATTTGTAAAATTATCGAAATACCCTCAGATTGTAAAACTACCAAAATACCCCT-A
26126819 ATTTGTAAAATTATCGAAATACCCT
1 ATTTGTAAAATTATCGAAATACCCT
26126844 TGTAGTGTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
52 4 0.06
53 41 0.60
54 23 0.34
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (54 bp):
ATTTGTAAAATTATCGAAATACCCTCAGATTGTAAAACTACCAAAATACCCCTA
Found at i:26126870 original size:27 final size:27
Alignment explanation
Indices: 26126822--26126908 Score: 129
Period size: 27 Copynumber: 3.2 Consensus size: 27
26126812 ACCCTCAATT
26126822 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
26126849 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
* * * *
26126876 TGTAAAATAACCGACATACCCCTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
26126903 GGTAAA
1 TGTAAA
26126909 GTGACTATTT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCTTGTAG
Found at i:26130224 original size:24 final size:25
Alignment explanation
Indices: 26130188--26130266 Score: 76
Period size: 24 Copynumber: 3.3 Consensus size: 25
26130178 CTTCTTTGTT
* *
26130188 TTCACCTCCACCATTGTGCTT-ATC
1 TTCATCTCTACCATTGTGCTTCATC
**
26130212 TTCATCTCTACCATCAT-CTTCATC
1 TTCATCTCTACCATTGTGCTTCATC
*
26130236 TGCATCTCTACC-TTCG-GCTTCATC
1 TTCATCTCTACCATT-GTGCTTCATC
26130260 TTCATCT
1 TTCATCT
26130267 TCTTCTCCAT
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
23 4 0.09
24 40 0.91
ACGTcount: A:0.16, C:0.37, G:0.06, T:0.41
Consensus pattern (25 bp):
TTCATCTCTACCATTGTGCTTCATC
Found at i:26142041 original size:40 final size:40
Alignment explanation
Indices: 26141964--26142141 Score: 238
Period size: 40 Copynumber: 4.5 Consensus size: 40
26141954 AAACCAAGTA
* * *
26141964 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
*
26142003 CCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
26142043 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* *
26142083 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACT-AGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CACAAATG
26142123 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
26142142 TTATCATCCG
Statistics
Matches: 125, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
39 15 0.12
40 110 0.88
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:26144322 original size:40 final size:38
Alignment explanation
Indices: 26144278--26144370 Score: 96
Period size: 40 Copynumber: 2.4 Consensus size: 38
26144268 GTACCTTTTG
* * *
26144278 GTGTGTAGGGTTGGATGGGTTGATTTTATCCCCATATTTA
1 GTGTGTAGGGTTGGATGGGTCGATTCTATCCCCACA--TA
** * *
26144318 GTGTGTAAAGCTGGGTGGGTCGATTCTATCCCCACATA
1 GTGTGTAGGGTTGGATGGGTCGATTCTATCCCCACATA
*
26144356 GTGTGTTGGGTTGGA
1 GTGTGTAGGGTTGGA
26144371 CGAAGATGGT
Statistics
Matches: 41, Mismatches: 12, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
38 12 0.29
40 29 0.71
ACGTcount: A:0.17, C:0.13, G:0.33, T:0.37
Consensus pattern (38 bp):
GTGTGTAGGGTTGGATGGGTCGATTCTATCCCCACATA
Found at i:26151483 original size:16 final size:18
Alignment explanation
Indices: 26151462--26151498 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
26151452 AGTCTCTAGT
26151462 AGTTT-ACTATAGTT-TC
1 AGTTTAACTATAGTTATC
26151478 AGTTTAACTATAGTTATC
1 AGTTTAACTATAGTTATC
26151496 AGT
1 AGT
26151499 ATATACTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.26
17 9 0.47
18 5 0.26
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (18 bp):
AGTTTAACTATAGTTATC
Found at i:26158441 original size:26 final size:26
Alignment explanation
Indices: 26158407--26158458 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
26158397 GATTTAATTC
26158407 TTTCTCATAGTCATCAAAGAAAGGAA
1 TTTCTCATAGTCATCAAAGAAAGGAA
26158433 TTTCTCATAGTCATCAAAGAAAGGAA
1 TTTCTCATAGTCATCAAAGAAAGGAA
26158459 GTGGATATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (26 bp):
TTTCTCATAGTCATCAAAGAAAGGAA
Found at i:26161532 original size:6 final size:6
Alignment explanation
Indices: 26161517--26161631 Score: 94
Period size: 6 Copynumber: 19.7 Consensus size: 6
26161507 ATTTAGGGTT
* * * ** *
26161517 ATTTCG ATTTTA ATTTTG ATTTTG ATTTTG ATTTAG -GGTT- ATTTCG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
** * **
26161563 ATTTTG -GGTT- ATTTAG ATTTCA ATTTTG ATTTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG A-TTTTG ATTTTG ATTTTG
26161610 ATTTTG ATTTTG ATTTTG ATTT
1 ATTTTG ATTTTG ATTTTG ATTT
26161632 CAATTTAGGG
Statistics
Matches: 84, Mismatches: 20, Indels: 10
0.74 0.18 0.09
Matches are distributed among these distances:
5 5 0.06
6 73 0.87
7 6 0.07
ACGTcount: A:0.19, C:0.03, G:0.17, T:0.62
Consensus pattern (6 bp):
ATTTTG
Found at i:26161565 original size:16 final size:16
Alignment explanation
Indices: 26161541--26161582 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
26161531 TTTGATTTTG
*
26161541 ATTTTGATTTAGGGTT
1 ATTTAGATTTAGGGTT
* *
26161557 ATTTCGATTTTGGGTT
1 ATTTAGATTTAGGGTT
26161573 ATTTAGATTT
1 ATTTAGATTT
26161583 CAATTTTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.19, C:0.02, G:0.21, T:0.57
Consensus pattern (16 bp):
ATTTAGATTTAGGGTT
Found at i:26162007 original size:62 final size:61
Alignment explanation
Indices: 26161900--26162035 Score: 209
Period size: 62 Copynumber: 2.2 Consensus size: 61
26161890 GTTAAAGTGT
* *
26161900 TTGGTTATTGTCTGCCATGTGCATGACAGAAATTATTATGGTTGTATTAAATTATTTTTGTA
1 TTGGTTATTGTCTACCATGTGCATGACAGAAATGATTATGGTTGTATTAAATTA-TTTTGTA
* * * *
26161962 TTGGTTACTGTCTACCATGTGCATGACAGAAATGGTTGTGTTTGTATTAAATTATTTTGTA
1 TTGGTTATTGTCTACCATGTGCATGACAGAAATGATTATGGTTGTATTAAATTATTTTGTA
26162023 TTGGTTATTGTCT
1 TTGGTTATTGTCT
26162036 GACAAAAATG
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
61 19 0.28
62 48 0.72
ACGTcount: A:0.24, C:0.09, G:0.21, T:0.47
Consensus pattern (61 bp):
TTGGTTATTGTCTACCATGTGCATGACAGAAATGATTATGGTTGTATTAAATTATTTTGTA
Found at i:26162160 original size:15 final size:15
Alignment explanation
Indices: 26162140--26162189 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
26162130 AAATAAGAAA
26162140 TGTCTGGTAGTGATG
1 TGTCTGGTAGTGATG
26162155 TGTCTGGTAGTGATG
1 TGTCTGGTAGTGATG
* ***
26162170 TATCTTAAAGTGATG
1 TGTCTGGTAGTGATG
26162185 TGTCT
1 TGTCT
26162190 AATAGGATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.18, C:0.08, G:0.32, T:0.42
Consensus pattern (15 bp):
TGTCTGGTAGTGATG
Found at i:26164043 original size:68 final size:66
Alignment explanation
Indices: 26163903--26164064 Score: 234
Period size: 68 Copynumber: 2.4 Consensus size: 66
26163893 CACTTGTGTA
* * *
26163903 TGACTTTTTTTTAATATGCATGCAGTGATTATTGGTGCGTATGACTATTTTTAATATACATGATG
1 TGACTATTTTTTAATATGCATGCAGTGATTATTGATGCGTAAGACTATTTTTAATATACATGATG
26163968 T
66 T
* * * * *
26163969 TAACTATTTTTTAATATGCATGCAGTGATTGTTGATGTGTAAGATTATTTTTTTAATATACATGT
1 TGACTATTTTTTAATATGCATGCAGTGATTATTGATGCGTAAGACTA--TTTTTAATATACATGA
26164034 TGT
64 TGT
26164037 TGACTATTTTTTAATATGCATGCAGTGA
1 TGACTATTTTTTAATATGCATGCAGTGA
26164065 GCGTGAGTAT
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
66 40 0.47
68 45 0.53
ACGTcount: A:0.27, C:0.08, G:0.17, T:0.48
Consensus pattern (66 bp):
TGACTATTTTTTAATATGCATGCAGTGATTATTGATGCGTAAGACTATTTTTAATATACATGATG
T
Found at i:26164116 original size:2 final size:2
Alignment explanation
Indices: 26164111--26164937 Score: 1654
Period size: 2 Copynumber: 413.5 Consensus size: 2
26164101 TGTTTTTTAG
26164111 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26164153 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26164195 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26164237 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26164279 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26164321 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26164363 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26164405 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26164447 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26164489 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26164531 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26164573 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26164615 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26164657 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26164699 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26164741 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26164783 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26164825 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26164867 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
26164909 GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
26164938 ATTGTTGGTG
Statistics
Matches: 825, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 825 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:26165617 original size:21 final size:21
Alignment explanation
Indices: 26165591--26165640 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
26165581 CAAGTGGTTG
* *
26165591 CCCCAACTTAGTAATAG-GCTA
1 CCCCAACTTAGCAAGAGAG-TA
*
26165612 CCCCAAATTAGCAAGAGAGTA
1 CCCCAACTTAGCAAGAGAGTA
26165633 CCCCAACT
1 CCCCAACT
26165641 CAACAGGCTG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 23 0.96
22 1 0.04
ACGTcount: A:0.36, C:0.32, G:0.14, T:0.18
Consensus pattern (21 bp):
CCCCAACTTAGCAAGAGAGTA
Found at i:26166454 original size:36 final size:36
Alignment explanation
Indices: 26166399--26166475 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
26166389 GTTAGCCATG
*
26166399 TATACCAGCAGTCAAGTATAACAACATAAGCAACAA
1 TATACCAGCAGCCAAGTATAACAACATAAGCAACAA
* * *
26166435 TATACCAGTAGCCATGTATAACAACATAAGTAACAA
1 TATACCAGCAGCCAAGTATAACAACATAAGCAACAA
26166471 TATAC
1 TATAC
26166476 TAGCGACAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.48, C:0.21, G:0.10, T:0.21
Consensus pattern (36 bp):
TATACCAGCAGCCAAGTATAACAACATAAGCAACAA
Found at i:26166855 original size:3 final size:3
Alignment explanation
Indices: 26166847--26166905 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
26166837 CTCTTCTCAT
26166847 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
26166895 TCA TCA TCA TC
1 TCA TCA TCA TC
26166906 TTCTTCTTCT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.32, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:26166910 original size:3 final size:3
Alignment explanation
Indices: 26166904--26167714 Score: 1622
Period size: 3 Copynumber: 270.3 Consensus size: 3
26166894 ATCATCATCA
26166904 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
26166952 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
26167000 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
26167048 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
26167096 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
26167144 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
26167192 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
26167240 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
26167288 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
26167336 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
26167384 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
26167432 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
26167480 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
26167528 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
26167576 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
26167624 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
26167672 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
26167715 TTTTGTTTTC
Statistics
Matches: 808, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 808 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:26175052 original size:30 final size:30
Alignment explanation
Indices: 26175012--26175089 Score: 79
Period size: 31 Copynumber: 2.6 Consensus size: 30
26175002 GTAATTTGAT
*
26175012 ACAT-AAACTTTAATTTGGTGCAATTGTAC
1 ACATGAAACTTTAATTTGGTGCAAATGTAC
* * *
26175041 ACATGAAACTTTTATTATGGTTCAAATGTAT
1 ACATGAAACTTTAATT-TGGTGCAAATGTAC
*
26175072 ATATGAAA-TTTGAATTTG
1 ACATGAAACTTT-AATTTG
26175090 ATCAATCATA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
29 4 0.10
30 15 0.38
31 21 0.52
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (30 bp):
ACATGAAACTTTAATTTGGTGCAAATGTAC
Found at i:26178930 original size:133 final size:133
Alignment explanation
Indices: 26178676--26178979 Score: 385
Period size: 133 Copynumber: 2.3 Consensus size: 133
26178666 GATCTGCTGT
* * * * **
26178676 AATTTGATTTGCTTTACTCCTGCTCAGTAAAGATAAGATCTGTATGTTTAGCCTACTTTACTCCT
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGTA-GTATAGCCTACTCCACTCCT
* * * * *
26178741 GCTCAATGAAGATAAGGCTGGTGGCTGAAATCTACTCCATTGCCGATATATAGAGATAAGACTCG
65 ACTCAATGAAGATAAGGCTGGTGACTGAAATCTACTCCATCGCCGATACATAGAGATAAGACTCA
26178806 CCAA
130 CCAA
* *
26178810 AATTTGATCTGCTTCACTCCTACTCAGTGAAGATAAGATCTAGTA-TATAGCCTGCTCCACTCCT
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCT-GTAGTATAGCCTACTCCACTCCT
* * * * * * *
26178874 ACTCAGTGAAGATAAGGCTGGTGATTGGAATCTGCTCCATCGCCGGTACATGGAGATAAGATTCA
65 ACTCAATGAAGATAAGGCTGGTGACTGAAATCTACTCCATCGCCGATACATAGAGATAAGACTCA
*
26178939 TCAA
130 CCAA
*
26178943 AATTCGATCTGCTTCACTCCTGCTCAGTGAAGATAAG
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAG
26178980 GCTGGTGATT
Statistics
Matches: 146, Mismatches: 23, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
133 106 0.73
134 37 0.25
135 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (133 bp):
AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGTAGTATAGCCTACTCCACTCCTA
CTCAATGAAGATAAGGCTGGTGACTGAAATCTACTCCATCGCCGATACATAGAGATAAGACTCAC
CAA
Found at i:26178969 original size:90 final size:90
Alignment explanation
Indices: 26178861--26179348 Score: 949
Period size: 90 Copynumber: 5.4 Consensus size: 90
26178851 AGTATATAGC
* *
26178861 CTGCTCCACTCCTACTCAGTGAAGATAAGGCTGGTGATTGGAATCTGCTCCATCGCCGGTACATG
1 CTGCTTCACTCCTGCTCAGTGAAGATAAGGCTGGTGATTGGAATCTGCTCCATCGCCGGTACATG
26178926 GAGATAAGATTCATCAAAATTCGAT
66 GAGATAAGATTCATCAAAATTCGAT
26178951 CTGCTTCACTCCTGCTCAGTGAAGATAAGGCTGGTGATTGGAATCTGCTCCATCGCCGGTACATG
1 CTGCTTCACTCCTGCTCAGTGAAGATAAGGCTGGTGATTGGAATCTGCTCCATCGCCGGTACATG
26179016 GAGATAAGATTCATCAAAATTCGAT
66 GAGATAAGATTCATCAAAATTCGAT
26179041 CTGCTTCACTCCTGCTCAGTGAAGATAAGGCTGGTGATTGGAATCTGCTCCATCGCCGGTACATG
1 CTGCTTCACTCCTGCTCAGTGAAGATAAGGCTGGTGATTGGAATCTGCTCCATCGCCGGTACATG
26179106 GAGATAAGATTCATCAAAATTCGAT
66 GAGATAAGATTCATCAAAATTCGAT
26179131 CTGCTTCACTCCTGCTCAGTGAAGATAAGGCTGGTGATTGGAATCTGCTCCATCGCCGGTACATG
1 CTGCTTCACTCCTGCTCAGTGAAGATAAGGCTGGTGATTGGAATCTGCTCCATCGCCGGTACATG
26179196 GAGATAAGATTCATCAAAATTCGAT
66 GAGATAAGATTCATCAAAATTCGAT
26179221 CTGCTTCACTCCTGCTCAGTGAAGATAAGGCTGGTGATTGGAATCTGCTCCATCGCCGGTACATG
1 CTGCTTCACTCCTGCTCAGTGAAGATAAGGCTGGTGATTGGAATCTGCTCCATCGCCGGTACATG
26179286 GAGATAAGATTCATCAAAATTCGAT
66 GAGATAAGATTCATCAAAATTCGAT
*
26179311 CTGCTTCACTCCTGCTCAGTGAAGATAAGGCTGATGAT
1 CTGCTTCACTCCTGCTCAGTGAAGATAAGGCTGGTGAT
26179349 ATCTGTAATC
Statistics
Matches: 395, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 395 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (90 bp):
CTGCTTCACTCCTGCTCAGTGAAGATAAGGCTGGTGATTGGAATCTGCTCCATCGCCGGTACATG
GAGATAAGATTCATCAAAATTCGAT
Found at i:26195318 original size:3 final size:3
Alignment explanation
Indices: 26195310--26195334 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
26195300 GTTATTTACC
26195310 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
26195335 TCCTTTCCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:26197471 original size:27 final size:27
Alignment explanation
Indices: 26197433--26197491 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
26197423 TTTAATGGAG
26197433 GCACCAAATTGGATTAAAAAAAATATT
1 GCACCAAATTGGATTAAAAAAAATATT
26197460 GCACCAAATTGGATTAAAAAAAATATT
1 GCACCAAATTGGATTAAAAAAAATATT
26197487 GCACC
1 GCACC
26197492 GTATTTTCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.49, C:0.15, G:0.12, T:0.24
Consensus pattern (27 bp):
GCACCAAATTGGATTAAAAAAAATATT
Found at i:26197593 original size:135 final size:133
Alignment explanation
Indices: 26197353--26197594 Score: 466
Period size: 135 Copynumber: 1.8 Consensus size: 133
26197343 GTTTTCTAAA
26197353 TGCACCGTATTTTCATAGGTATTTTCGAAGGTAAATGAAAAAAAAATTATTAATTTTTGTTGCTG
1 TGCACCGTATTTTCATAGGTATTTTCGAAGGTAAATGAAAAAAAAATTATTAATTTTTGTTGCTG
26197418 CCTCCTTTAATGGAGGCACCAAATTGGATTAAAAAAAATATTGCACCAAATTGGATTAAAAAAAA
66 CCTCCTTTAATGGAGGCACCAAATTGGATTAAAAAAAATATTGCACCAAATTGGATTAAAAAAAA
26197483 TAT
131 TAT
26197486 TGCACCGTATTTTCATAGGTATTTTCGAAGGTAAATGGAAAAAAAAAATTATTAATTTTTGTTGC
1 TGCACCGTATTTTCATAGGTATTTTCGAAGGTAAAT-G-AAAAAAAAATTATTAATTTTTGTTGC
26197551 TGCCTCCTTTAATGGAGGCACCAAATTGGATTAAAAAAAATATT
64 TGCCTCCTTTAATGGAGGCACCAAATTGGATTAAAAAAAATATT
26197595 TGTTAGTGCC
Statistics
Matches: 107, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
133 36 0.34
134 1 0.01
135 70 0.65
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (133 bp):
TGCACCGTATTTTCATAGGTATTTTCGAAGGTAAATGAAAAAAAAATTATTAATTTTTGTTGCTG
CCTCCTTTAATGGAGGCACCAAATTGGATTAAAAAAAATATTGCACCAAATTGGATTAAAAAAAA
TAT
Found at i:26197957 original size:27 final size:28
Alignment explanation
Indices: 26197913--26197968 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 28
26197903 ATTTTTATAT
26197913 ACATAACTAACAGATTAAATATTGCTTA
1 ACATAACTAACAGATTAAATATTGCTTA
**
26197941 ACATAA-TAACATTTTAAATATTGCTTA
1 ACATAACTAACAGATTAAATATTGCTTA
26197968 A
1 A
26197969 AACATAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 20 0.77
28 6 0.23
ACGTcount: A:0.46, C:0.12, G:0.05, T:0.36
Consensus pattern (28 bp):
ACATAACTAACAGATTAAATATTGCTTA
Found at i:26198374 original size:30 final size:30
Alignment explanation
Indices: 26198339--26198398 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
26198329 TATTTTATTA
26198339 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* *
26198369 TTAATTTTGTTATTATTTTAGAGGTATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
26198399 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.02, G:0.15, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:26200014 original size:13 final size:13
Alignment explanation
Indices: 26199971--26200004 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
26199961 CAATACTTTT
26199971 GAAAAGTGTTGTG
1 GAAAAGTGTTGTG
26199984 GAAAAGTGTTGTG
1 GAAAAGTGTTGTG
26199997 GAAAAGTG
1 GAAAAGTG
26200005 CTTTTGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.38, T:0.26
Consensus pattern (13 bp):
GAAAAGTGTTGTG
Found at i:26204203 original size:22 final size:22
Alignment explanation
Indices: 26204173--26204235 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
26204163 CTATTATGTT
*
26204173 AAATAGTAGCAAAATAATAATA
1 AAATAGTAGCAAAATAATAAGA
* * *
26204195 AAATGGTAGCAAAACAATGAGA
1 AAATAGTAGCAAAATAATAAGA
26204217 AAATAGTAAG-AAAATAATA
1 AAATAGT-AGCAAAATAATA
26204236 TTGAAAAACA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
22 31 0.94
23 2 0.06
ACGTcount: A:0.62, C:0.05, G:0.14, T:0.19
Consensus pattern (22 bp):
AAATAGTAGCAAAATAATAAGA
Found at i:26207618 original size:19 final size:19
Alignment explanation
Indices: 26207594--26207636 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
26207584 AAATATATAT
26207594 TTAATAATACACCACATAA
1 TTAATAATACACCACATAA
* *
26207613 TTAATAGTTCACCACATAA
1 TTAATAATACACCACATAA
26207632 -TAATA
1 TTAATA
26207637 TTGTCCAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.49, C:0.19, G:0.02, T:0.30
Consensus pattern (19 bp):
TTAATAATACACCACATAA
Found at i:26209712 original size:50 final size:50
Alignment explanation
Indices: 26209637--26209732 Score: 174
Period size: 50 Copynumber: 1.9 Consensus size: 50
26209627 CCATGGCAAC
* *
26209637 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAGTGA
26209687 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAA
1 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAA
26209733 ATGGCAAGTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAGTGA
Found at i:26209781 original size:31 final size:31
Alignment explanation
Indices: 26209743--26210545 Score: 1572
Period size: 31 Copynumber: 25.9 Consensus size: 31
26209733 ATGGCAAGTA
26209743 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26209774 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26209805 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26209836 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26209867 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26209898 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26209929 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26209960 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26209991 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26210022 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26210053 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26210084 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26210115 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26210146 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26210177 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26210208 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26210239 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26210270 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26210301 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26210332 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26210363 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26210394 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26210425 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
* *
26210456 AAAAGTGGTAGCTTCGGCTACCTG-GCAAGTA
1 AAAAGTGGTAGCTTCGGCTACCTGATCAA-TG
26210487 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
26210518 AAAAGTGGTAGCTTCGGCTACCTGATCA
1 AAAAGTGGTAGCTTCGGCTACCTGATCA
26210546 TCGGCTACTT
Statistics
Matches: 766, Mismatches: 4, Indels: 4
0.99 0.01 0.01
Matches are distributed among these distances:
30 3 0.00
31 760 0.99
32 3 0.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGGCTACCTGATCAATG
Found at i:26210567 original size:46 final size:46
Alignment explanation
Indices: 26210500--26210591 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
26210490 AGTGGTAGCT
* *
26210500 TCGGCTACCTGATCAATGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
* * *
26210546 TCGGCTACTTGATTAGTGAAAAATGGTAGCTCCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
26210592 GTGAATAGTG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (46 bp):
TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
Found at i:26210595 original size:31 final size:31
Alignment explanation
Indices: 26210547--26210614 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
26210537 ACCTGATCAT
* * *
26210547 CGGCTACTTGATTAGTGAAAAATGGTAGCTC
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
* * *
26210578 CGGCTACCTGATCAGTGAATAGTGATAGCTT
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
26210609 CGGCTA
1 CGGCTA
26210615 TAAGTGACAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (31 bp):
CGGCTACCTGATCAGTGAAAAATGATAGCTC
Found at i:26217176 original size:50 final size:50
Alignment explanation
Indices: 26217100--26217273 Score: 258
Period size: 50 Copynumber: 3.5 Consensus size: 50
26217090 CCATGGAAAC
*
26217100 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * * *
26217150 AAGTGATAAATAATAACTTCAGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
26217200 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGGTCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
26217250 CAAGTGAAAAGTGGTAGCTTCGGC
1 -AAGTGATAAGTGATAGCTTCGGC
26217274 AACCTGATCA
Statistics
Matches: 109, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
50 88 0.81
51 21 0.19
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:26217287 original size:31 final size:31
Alignment explanation
Indices: 26217252--26217400 Score: 235
Period size: 31 Copynumber: 4.8 Consensus size: 31
26217242 ACAAATGACA
*
26217252 AGTGAAAAGTGGTAGCTTCGGCAACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
26217283 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
26217314 AGTGAAAAATGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
26217345 AGTGAAAAATGGTAGCTCCGGCTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
26217376 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
26217401 AAGTGACAAG
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 109 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:26217541 original size:46 final size:47
Alignment explanation
Indices: 26217420--26217541 Score: 147
Period size: 47 Copynumber: 2.6 Consensus size: 47
26217410 GTGATTTCCC
* * *
26217420 TATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACTG
1 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATACTG
* * * *
26217467 TATAAGACCATATCTAGGATATGACATCAGTGAGATATGTGATTC-G
1 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATACTG
* * *
26217513 TGTAAGACCATAGCTGGGCTATGGCATCA
1 TATAAGACCATATCTGGGATATGGCATCA
26217542 TTATGTGAAG
Statistics
Matches: 63, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
46 25 0.40
47 38 0.60
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (47 bp):
TATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATACTG
Found at i:26225801 original size:36 final size:36
Alignment explanation
Indices: 26225705--26225803 Score: 103
Period size: 36 Copynumber: 2.8 Consensus size: 36
26225695 ATTTTCACTA
**
26225705 AGGGTTCACATGATATATACAACTCGC--AGTTCCT
1 AGGGTTCACATGATATATATGACTCGCATAGTTCCT
* * * * * * *
26225739 AAGATTCGCATAATACATGTGTCTCGCATAGTTCCT
1 AGGGTTCACATGATATATATGACTCGCATAGTTCCT
26225775 AGGGTTCACATGATATATATGACTCGCAT
1 AGGGTTCACATGATATATATGACTCGCAT
26225804 GTAACACATA
Statistics
Matches: 47, Mismatches: 16, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
34 18 0.38
36 29 0.62
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (36 bp):
AGGGTTCACATGATATATATGACTCGCATAGTTCCT
Found at i:26228627 original size:10 final size:10
Alignment explanation
Indices: 26228612--26228638 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
26228602 TCATATCCAG
26228612 CACGATTAGA
1 CACGATTAGA
26228622 CACGATTAGA
1 CACGATTAGA
26228632 CACGATT
1 CACGATT
26228639 TTTTATACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (10 bp):
CACGATTAGA
Found at i:26229441 original size:61 final size:61
Alignment explanation
Indices: 26229360--26229482 Score: 246
Period size: 61 Copynumber: 2.0 Consensus size: 61
26229350 AAAACATATA
26229360 TATATTTAGAAATAATTATTTATAAAAAAAACATGGAAATGCATACAAGATTAAATTAATT
1 TATATTTAGAAATAATTATTTATAAAAAAAACATGGAAATGCATACAAGATTAAATTAATT
26229421 TATATTTAGAAATAATTATTTATAAAAAAAACATGGAAATGCATACAAGATTAAATTAATT
1 TATATTTAGAAATAATTATTTATAAAAAAAACATGGAAATGCATACAAGATTAAATTAATT
26229482 T
1 T
26229483 TGCTATACAT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.52, C:0.05, G:0.08, T:0.35
Consensus pattern (61 bp):
TATATTTAGAAATAATTATTTATAAAAAAAACATGGAAATGCATACAAGATTAAATTAATT
Found at i:26231069 original size:14 final size:15
Alignment explanation
Indices: 26231050--26231082 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
26231040 GAGTCAAAGC
*
26231050 TAAAAAT-TTTATAT
1 TAAAAATATTTAAAT
26231064 TAAAAATATTTAAAT
1 TAAAAATATTTAAAT
26231079 TAAA
1 TAAA
26231083 TTATTACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TAAAAATATTTAAAT
Found at i:26233425 original size:14 final size:14
Alignment explanation
Indices: 26233406--26233443 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
26233396 GTATGGGTCG
26233406 TGGGCAGAGGGCAC
1 TGGGCAGAGGGCAC
*
26233420 TGGGCAGAAGGCAC
1 TGGGCAGAGGGCAC
*
26233434 CGGGCAGAGG
1 TGGGCAGAGG
26233444 TGCTAGTCAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.24, C:0.21, G:0.50, T:0.05
Consensus pattern (14 bp):
TGGGCAGAGGGCAC
Found at i:26234679 original size:16 final size:16
Alignment explanation
Indices: 26234658--26234689 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26234648 CATGAGATAC
*
26234658 AACTTTACGTTAAGTT
1 AACTTTACGCTAAGTT
26234674 AACTTTACGCTAAGTT
1 AACTTTACGCTAAGTT
26234690 GAGCAAGTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (16 bp):
AACTTTACGCTAAGTT
Found at i:26234959 original size:6 final size:7
Alignment explanation
Indices: 26234933--26234958 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
26234923 AAATTCTAAT
26234933 TTTTTTA
1 TTTTTTA
26234940 TTTTTTA
1 TTTTTTA
26234947 TTTTTTA
1 TTTTTTA
26234954 TTTTT
1 TTTTT
26234959 AACAAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:26236879 original size:5 final size:5
Alignment explanation
Indices: 26236863--26236932 Score: 79
Period size: 5 Copynumber: 13.6 Consensus size: 5
26236853 TTCTTTTGTT
*
26236863 ATATA TATATA ATATA ATAATA ATATA ATATA ATCTA ATATTA ATATA
1 ATATA -ATATA ATATA AT-ATA ATATA ATATA ATATA ATA-TA ATATA
* *
26236911 ATA-A AAATA ATATA TTATA ATA
1 ATATA ATATA ATATA ATATA ATA
26236933 AAAATCTTAA
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
4 3 0.05
5 37 0.67
6 15 0.27
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:26236890 original size:16 final size:16
Alignment explanation
Indices: 26236869--26236924 Score: 73
Period size: 16 Copynumber: 3.6 Consensus size: 16
26236859 TGTTATATAT
26236869 ATATAATATAATAATA
1 ATATAATATAATAATA
*
26236885 ATATAATATAAT-CTA
1 ATATAATATAATAATA
26236900 ATATTAATATAATAA-A
1 ATA-TAATATAATAATA
26236916 A-ATAATATA
1 ATATAATATA
26236925 TTATAATAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
14 7 0.19
15 6 0.17
16 23 0.64
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAATATAATAATA
Found at i:26239594 original size:16 final size:16
Alignment explanation
Indices: 26239573--26239603 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26239563 CGGCAAATCC
*
26239573 CGAAATGTCGAAAAGT
1 CGAAATGCCGAAAAGT
26239589 CGAAATGCCGAAAAG
1 CGAAATGCCGAAAAG
26239604 CTAAAACTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.16, G:0.26, T:0.13
Consensus pattern (16 bp):
CGAAATGCCGAAAAGT
Found at i:26239856 original size:29 final size:29
Alignment explanation
Indices: 26239814--26239898 Score: 109
Period size: 29 Copynumber: 3.0 Consensus size: 29
26239804 GCATGACTGT
26239814 GAATGTGATTTGGGCCTAATGGGCCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
* * * *
26239843 GAATGTGATTTGGGCATAATGAGTCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAC
* *
26239872 GAATGAGA-TTGGGCCTAGTGGGCCATA
1 GAATGTGATTTGGGCCTAATGGGCCATA
26239899 TACATGTATG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 15 0.32
29 32 0.68
ACGTcount: A:0.27, C:0.13, G:0.32, T:0.28
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAC
Found at i:26245850 original size:21 final size:21
Alignment explanation
Indices: 26245826--26245904 Score: 81
Period size: 21 Copynumber: 3.7 Consensus size: 21
26245816 TTTGTTATAT
26245826 ATATAATATAATAATATAATA
1 ATATAATATAATAATATAATA
*
26245847 ATATAGTA-ATATAATATAATGTA
1 ATATAATATA-ATAATATAA--TA
*
26245870 ATATTAATATAATAA-AAAATA
1 ATA-TAATATAATAATATAATA
*
26245891 ATATATTATAATAA
1 ATATAATATAATAA
26245905 AAATCTTAAG
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
20 11 0.22
21 21 0.43
23 8 0.16
24 8 0.16
25 1 0.02
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (21 bp):
ATATAATATAATAATATAATA
Found at i:26245879 original size:6 final size:5
Alignment explanation
Indices: 26245821--26245903 Score: 73
Period size: 5 Copynumber: 16.4 Consensus size: 5
26245811 TTTCTTTTGT
26245821 TATATA TATAA TAT-A -ATAA TATAA TA-ATA TAGTAA TATAA TATAA
1 TATA-A TATAA TATAA TATAA TATAA TATA-A TA-TAA TATAA TATAA
* * * *
26245866 TGTAA TATTAA TATAA TAAAA AATAA TATAT TATAA TA
1 TATAA TA-TAA TATAA TATAA TATAA TATAA TATAA TA
26245904 AAAATCTTAA
Statistics
Matches: 63, Mismatches: 8, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
3 2 0.03
4 3 0.05
5 45 0.71
6 12 0.19
7 1 0.02
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:26249784 original size:13 final size:12
Alignment explanation
Indices: 26249759--26249792 Score: 59
Period size: 13 Copynumber: 2.8 Consensus size: 12
26249749 TTGTTATTTG
26249759 AATCTGAATCTA
1 AATCTGAATCTA
26249771 AATCTGATATCTA
1 AATCTGA-ATCTA
26249784 AATCTGAAT
1 AATCTGAAT
26249793 ATGAAACTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (12 bp):
AATCTGAATCTA
Found at i:26256125 original size:26 final size:26
Alignment explanation
Indices: 26256089--26256198 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
26256079 TGATACAAAT
*
26256089 TGATAAAAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
26256115 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
26256141 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
26256167 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
26256193 TGATAA
1 TGATAA
26256199 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:26264240 original size:25 final size:25
Alignment explanation
Indices: 26264199--26264293 Score: 72
Period size: 25 Copynumber: 3.8 Consensus size: 25
26264189 TCCTGTACAC
*
26264199 GTATGCTCA-TACAAGCTGTGAATCA
1 GTATGCTCACT-CGAGCTGTGAATCA
*
26264224 GTATGCTCACTCGAGCTAT-ATATCA
1 GTATGCTCACTCGAGCTGTGA-ATCA
* *
26264249 GTATGCTCTCAT-GAGCTGTAAATC-
1 GTATGCTCAC-TCGAGCTGTGAATCA
* *
26264273 GATATACTCACACGAGCTGTG
1 G-TATGCTCACTCGAGCTGTG
26264294 GGTCAGAACG
Statistics
Matches: 56, Mismatches: 8, Indels: 12
0.74 0.11 0.16
Matches are distributed among these distances:
24 2 0.04
25 51 0.91
26 3 0.05
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (25 bp):
GTATGCTCACTCGAGCTGTGAATCA
Found at i:26269027 original size:11 final size:10
Alignment explanation
Indices: 26268958--26269043 Score: 56
Period size: 10 Copynumber: 8.6 Consensus size: 10
26268948 CACATTAGCA
26268958 TTTAATTAATT
1 TTTAA-TAATT
26268969 TTTAA-AATT
1 TTTAATAATT
26268978 TTTAA-AATAT
1 TTTAATAAT-T
**
26268988 TAAAAATATATT
1 T-TTAATA-ATT
*
26269000 TTT-AT-AGT
1 TTTAATAATT
26269008 TTTAATAATT
1 TTTAATAATT
26269018 TTTAAATAA-T
1 TTT-AATAATT
*
26269028 TTTAATGATT
1 TTTAATAATT
26269038 TTTAAT
1 TTTAAT
26269044 TTTAAAAAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 17
0.71 0.08 0.20
Matches are distributed among these distances:
8 5 0.08
9 18 0.30
10 20 0.33
11 12 0.20
12 3 0.05
13 2 0.03
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (10 bp):
TTTAATAATT
Found at i:26273424 original size:13 final size:13
Alignment explanation
Indices: 26273406--26273468 Score: 67
Period size: 13 Copynumber: 4.8 Consensus size: 13
26273396 TTAGCTATAA
26273406 TTTTGAAAAGTGC
1 TTTTGAAAAGTGC
*
26273419 TTTTGAAAAATG-
1 TTTTGAAAAGTGC
* *
26273431 TTGTGGAAAAATGC
1 TT-TTGAAAAGTGC
26273445 TTTT-AAGAAGTGC
1 TTTTGAA-AAGTGC
26273458 TTTTGAAAAGT
1 TTTTGAAAAGT
26273469 TTGGTTTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
12 4 0.10
13 34 0.81
14 4 0.10
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (13 bp):
TTTTGAAAAGTGC
Found at i:26276514 original size:95 final size:94
Alignment explanation
Indices: 26276415--26276928 Score: 525
Period size: 95 Copynumber: 5.4 Consensus size: 94
26276405 ATTAGAGAAA
*
26276415 CGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGTAAATCAAATGAACTTAAGTTGT
1 CGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGAACTTAAGTTG-
** *
26276480 GAACTTAAATCAACGAGCCATTTGAAGCAG
65 GAACTTAAATCAGTGAGCCATTTGGAGCAG
* * * * * * * *
26276510 CGATATTAAATTAGCTAACTCAGAGAGGATTGTTCATGATATTAAACCATATGAACTTAGGCTGC
1 CGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGAACTTAAGTTGG
* * * *
26276575 AATCTTAGATCAGTGAG-GATATTAGAGCAA
66 AA-CTTAAATCAGTGAGCCAT-TTGGAGCAG
* * * *
26276605 TGATATTAAATCAGCTAACTCAGATAGGATTGTTCATGATAGTAGATCAAATGAACTT-AGATTG
1 CGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGAACTTAAG-TTG
* * *
26276669 CGATCTTAAATCAGTGACCCATTTGGAGTAG
65 -GAACTTAAATCAGTGAGCCATTTGGAGCAG
* * *
26276700 GGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTT-AGCTTG
1 CGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGAACTTAAG-TTG
* * *
26276764 CAATCCTAAATTC-GTGAGTCATTTGGAGCAG
65 GAA-CTTAAA-TCAGTGAGCCATTTGGAGCAG
* ** * *
26276795 CGATATTAAATCAGCTAACTCAGAGAAAATCATTCATGATAGTAAATCGAATGAACTTAGGTTGT
1 CGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGAACTTAAGTTG-
* * *
26276860 GATA-TTAAATCAGGGAGTCATTTGGAGTAG
65 GA-ACTTAAATCAGTGAGCCATTTGGAGCAG
* * * * *
26276890 CGGTATTAAATCAGCTACCTTAGAGAATATTTTTCATGA
1 CGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGA
26276929 CAAATAAACT
Statistics
Matches: 344, Mismatches: 64, Indels: 22
0.80 0.15 0.05
Matches are distributed among these distances:
94 8 0.02
95 328 0.95
96 7 0.02
97 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (94 bp):
CGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGAACTTAAGTTGG
AACTTAAATCAGTGAGCCATTTGGAGCAG
Found at i:26276657 original size:190 final size:189
Alignment explanation
Indices: 26276334--26276915 Score: 661
Period size: 190 Copynumber: 3.1 Consensus size: 189
26276324 TGGAAATAAA
* * * * *** **
26276334 CTAACTCAAATAGGATTGTTGATGATGATAAACCAAATGAATTTAGGCTATGATCTTAGATCAAC
1 CTAACTCAGAGAGGATTGTTCATGAT-ATAAACCAAATGAACTTAGGCTGCAATCTTAGATCAGT
* * *
26276399 AAGCAAATTAGAGAAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGTAAATCA
65 GAGCATATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGTAAATCA
* * * *
26276464 AATGAACTTAAGTTGTGAACTTAAATCAACGAGCCATTTGAAGCAGCGATATTAAATTAG
130 AATGAACTTAAGTTGTGAACTTAAATCAGCGAGCCATTTGGAGTAGCGATATTAAATCAG
*
26276524 CTAACTCAGAGAGGATTGTTCATGATATTAAACCATATGAACTTAGGCTGCAATCTTAGATCAGT
1 CTAACTCAGAGAGGATTGTTCATGATA-TAAACCAAATGAACTTAGGCTGCAATCTTAGATCAGT
* * * *
26276589 GAGGATATTAGAGCAATGATATTAAATCAGCTAACTCAGATAGGATTGTTCATGATAGTAGATCA
65 GAGCATATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGTAAATCA
* * * * *
26276654 AATGAACTT-AGATTGCGATCTTAAATCAGTGACCCATTTGGAGTAGGGATATTAAATCAG
130 AATGAACTTAAG-TTGTGAACTTAAATCAGCGAGCCATTTGGAGTAGCGATATTAAATCAG
* * * * *
26276714 CTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTTA-GCTTGCAATCCTAAATTC-
1 CTAACTCAGAGAGGATTGTTCATGAT-ATAAACCAAATGAACTTAGGC-TGCAATCTTAGA-TCA
* * * * **
26276777 GTGAGTCAT-TTGGAGCAGCGATATTAAATCAGCTAACTCAGAGAAAATCATTCATGATAGTAAA
63 GTGAG-CATATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGTAAA
* * * * *
26276841 TCGAATGAACTTAGGTTGTGATA-TTAAATCAGGGAGTCATTTGGAGTAGCGGTATTAAATCAG
127 TCAAATGAACTTAAGTTGTGA-ACTTAAATCAGCGAGCCATTTGGAGTAGCGATATTAAATCAG
* *
26276904 CTACCTTAGAGA
1 CTAACTCAGAGA
26276916 ATATTTTTCA
Statistics
Matches: 331, Mismatches: 53, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
189 5 0.02
190 320 0.97
191 6 0.02
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (189 bp):
CTAACTCAGAGAGGATTGTTCATGATATAAACCAAATGAACTTAGGCTGCAATCTTAGATCAGTG
AGCATATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGTAAATCAA
ATGAACTTAAGTTGTGAACTTAAATCAGCGAGCCATTTGGAGTAGCGATATTAAATCAG
Found at i:26276928 original size:285 final size:285
Alignment explanation
Indices: 26276416--26276928 Score: 640
Period size: 285 Copynumber: 1.8 Consensus size: 285
26276406 TTAGAGAAAC
* * * *
26276416 GATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGTAAATCAAATGAACTTAAGTTGTG
1 GATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTTAAGTTGTC
* * ** **
26276481 AACTTAAATCAACGAGCCATTTGAAGCAGCGATATTAAATTAGCTAACTCAGAGAGGATTGTTCA
66 AACCTAAATCAACGAGCCATTTGAAGCAGCGATATTAAATCAGCTAACTCAGAGAAAATCATTCA
* * * * * *
26276546 TGATATTAAACCATATGAACTTAGGCTGCAATCTTAGATCAGTGAGGATATTAGAGCAATGATAT
131 TGATAGTAAACCATATGAACTTAGGCTGCAATATTAAATCAGGGAGCATATTAGAGCAACGATAT
* *
26276611 TAAATCAGCTAACTCAGATAGGATTGTTCATGATAGTAGATCAAATGAACTTAGATTGCGATCTT
196 TAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAGATCAAATGAACTTAGATTGCGATCTT
26276676 AAATCAGTGACCCATTTGGAGTAGG
261 AAATCAGTGACCCATTTGGAGTAGG
26276701 GATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTT-AGCTTG-
1 GATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTTAAG-TTGT
** * *
26276764 CAATCCTAAATTC-GTGAGTCATTTGGAGCAGCGATATTAAATCAGCTAACTCAGAGAAAATCAT
65 CAA-CCTAAA-TCAACGAGCCATTTGAAGCAGCGATATTAAATCAGCTAACTCAGAGAAAATCAT
* * ** * * *
26276828 TCATGATAGTAAATCGA-ATGAACTTAGGTTGTGATATTAAATCAGGGAGTCAT-TTGGAGTAGC
128 TCATGATAGTAAA-CCATATGAACTTAGGCTGCAATATTAAATCAGGGAG-CATATTAGAGCAAC
* * * * *
26276891 GGTATTAAATCAGCTACCTTAGAGAATATTTTTCATGA
191 GATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGA
26276929 CAAATAAACT
Statistics
Matches: 189, Mismatches: 34, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
284 4 0.02
285 179 0.95
286 6 0.03
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (285 bp):
GATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTTAAGTTGTC
AACCTAAATCAACGAGCCATTTGAAGCAGCGATATTAAATCAGCTAACTCAGAGAAAATCATTCA
TGATAGTAAACCATATGAACTTAGGCTGCAATATTAAATCAGGGAGCATATTAGAGCAACGATAT
TAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAGATCAAATGAACTTAGATTGCGATCTT
AAATCAGTGACCCATTTGGAGTAGG
Found at i:26289439 original size:27 final size:26
Alignment explanation
Indices: 26289409--26289471 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
26289399 AGATAATTAA
26289409 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
26289436 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
26289463 AATATAAAT
1 AATA-AAAT
26289472 AAAAAGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:26289458 original size:15 final size:15
Alignment explanation
Indices: 26289438--26289467 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26289428 ATAATCCTAA
*
26289438 TAATTATCTTAATAT
1 TAATTATCCTAATAT
26289453 TAATTATCCTAATAT
1 TAATTATCCTAATAT
26289468 AAATAAAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:26299222 original size:24 final size:26
Alignment explanation
Indices: 26299172--26299224 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
26299162 GTATTATAAG
* *
26299172 AAAACATATCTATTCTTTTATACAAT
1 AAAACATATCTAATCTTTTATAAAAT
*
26299198 AAAAGATATCTAAT-TTTTA-AAAAT
1 AAAACATATCTAATCTTTTATAAAAT
26299222 AAA
1 AAA
26299225 TTCCATATCG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 7 0.29
25 5 0.21
26 12 0.50
ACGTcount: A:0.51, C:0.09, G:0.02, T:0.38
Consensus pattern (26 bp):
AAAACATATCTAATCTTTTATAAAAT
Found at i:26309374 original size:6 final size:6
Alignment explanation
Indices: 26309363--26309391 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
26309353 CCTTTGATGT
26309363 GGGATA GGGATA GGGATA GGGATA GGGAT
1 GGGATA GGGATA GGGATA GGGATA GGGAT
26309392 CGTGATGAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.52, T:0.17
Consensus pattern (6 bp):
GGGATA
Found at i:26310499 original size:38 final size:39
Alignment explanation
Indices: 26310439--26310513 Score: 91
Period size: 39 Copynumber: 1.9 Consensus size: 39
26310429 AAAAAATAGT
** * *
26310439 AGAGGATTTTTTTCAACAG-AAAATATTTTGCAACAGCC
1 AGAGGATTTTCCTCAACAGAAAAATATTCTACAACAGCC
26310477 AGAGGATTTTCCTCAATC-GAAAAATATTCTACAACAG
1 AGAGGATTTTCCTCAA-CAGAAAAATATTCTACAACAG
26310514 AAAATATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
38 15 0.48
39 16 0.52
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (39 bp):
AGAGGATTTTCCTCAACAGAAAAATATTCTACAACAGCC
Found at i:26315913 original size:14 final size:14
Alignment explanation
Indices: 26315894--26315928 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
26315884 GTTTGCATGT
*
26315894 AAAATGGTTTTCGG
1 AAAATGATTTTCGG
*
26315908 AAAATGATTTTTGG
1 AAAATGATTTTCGG
26315922 AAAATGA
1 AAAATGA
26315929 GTTATTTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.23, T:0.34
Consensus pattern (14 bp):
AAAATGATTTTCGG
Found at i:26321659 original size:20 final size:19
Alignment explanation
Indices: 26321605--26321660 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 19
26321595 CAAAATTATT
**
26321605 ATTTTAGAAAATTTATAAA
1 ATTTTAGAATTTTTATAAA
26321624 ATTTTA-ACATTCTTTATAAA
1 ATTTTAGA-ATT-TTTATAAA
*
26321644 TTTTTTAGAATTTTTAT
1 -ATTTTAGAATTTTTAT
26321661 TTTTTTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
18 1 0.03
19 7 0.23
20 13 0.43
21 8 0.27
22 1 0.03
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.54
Consensus pattern (19 bp):
ATTTTAGAATTTTTATAAA
Found at i:26328205 original size:40 final size:39
Alignment explanation
Indices: 26328116--26328259 Score: 143
Period size: 39 Copynumber: 3.6 Consensus size: 39
26328106 TTGAATGATG
* * *
26328116 TCCGGGCTAAGTCCTGAAGGC--TTGTGCTAAGTGACAATA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGCGAA-TTACTATA
*
26328155 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGA-TACTA-A
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGA-ATTACTATA
*
26328194 TTCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTATA
1 -TCCGGGCTAAGTCCGAAGGCATTTGTGCGAATTACTATA
* *
26328234 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
26328260 AACGAGGAGC
Statistics
Matches: 88, Mismatches: 9, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
38 1 0.01
39 49 0.56
40 30 0.34
41 7 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAATTACTATA
Found at i:26332368 original size:44 final size:44
Alignment explanation
Indices: 26332319--26332406 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
26332309 TCTGATGTCC
26332319 TACAATTGATTAGCACAGTTCTTATTTACAAACCATAATCACTA
1 TACAATTGATTAGCACAGTTCTTATTTACAAACCATAATCACTA
*
26332363 TACAATTGATTAGCATAGTTCTTATTTACAAACCATAATCACTA
1 TACAATTGATTAGCACAGTTCTTATTTACAAACCATAATCACTA
26332407 AACCCACAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.39, C:0.19, G:0.07, T:0.35
Consensus pattern (44 bp):
TACAATTGATTAGCACAGTTCTTATTTACAAACCATAATCACTA
Found at i:26337353 original size:49 final size:49
Alignment explanation
Indices: 26337290--26337393 Score: 199
Period size: 49 Copynumber: 2.1 Consensus size: 49
26337280 CATTATTATC
26337290 ATTATTATTATATAGTATTATTAATAAAAAAAATTATTTTATATTTTTT
1 ATTATTATTATATAGTATTATTAATAAAAAAAATTATTTTATATTTTTT
*
26337339 ATTATTATTATATAGTATTATTAATAAAAAAAATTATTTTTTATTTTTT
1 ATTATTATTATATAGTATTATTAATAAAAAAAATTATTTTATATTTTTT
26337388 ATTATT
1 ATTATT
26337394 GTATTCATCA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 54 1.00
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (49 bp):
ATTATTATTATATAGTATTATTAATAAAAAAAATTATTTTATATTTTTT
Found at i:26344219 original size:44 final size:44
Alignment explanation
Indices: 26344146--26344233 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
26344136 GGATTTTATC
* *
26344146 TTCCTGAAGTTGTAGTGGAGTAAGATAAAGCTACAAATT-CTATA
1 TTCCTGAAGTTGCAGTGGAATAAGATAAAGCTAC-AATTCCTATA
*
26344190 TTCCTGAAGTTGCAGT-GAATCAGATTAAAGCTACAATTCCTATA
1 TTCCTGAAGTTGCAGTGGAATAAGA-TAAAGCTACAATTCCTATA
26344234 CCCTTGAAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
43 10 0.26
44 29 0.74
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (44 bp):
TTCCTGAAGTTGCAGTGGAATAAGATAAAGCTACAATTCCTATA
Found at i:26344319 original size:94 final size:93
Alignment explanation
Indices: 26344216--26344623 Score: 313
Period size: 94 Copynumber: 4.3 Consensus size: 93
26344206 GAATCAGATT
* * * * *
26344216 AAAGCTACAATTCCTATACCCTTGAAGTTTTAGGGGGTCGGAATAAAATTACAATTGTGAATCTT
1 AAAGCTACAAATCCTATACCCCTGAAGTTGTAGGGAGT-AGAATAAAATTACAATTGTGAATCTT
*
26344281 ATCTCTCTGAAGTTACAGTGGAGCAAGAA
65 ATCTCCCTGAAGTTACAGTGGAGCAAGAA
* * * * * * * * * * *
26344310 AAAACTACAAACCCTATATCCTTAAAGTTGTAGTGGAATAGATTGAAACTACAATAGCGAATCTT
1 AAAGCTACAAATCCTATACCCCTGAAGTTGTAG-GGAGTAGAATAAAATTACAATTGTGAATCTT
*
26344375 ATC-CCCTTGAAGTTACAGTGGAGCAAGAT
65 ATCTCCC-TGAAGTTACAGTGGAGCAAGAA
* * ** *
26344404 AAAGCTACAAGTCCTATACCCCTGAAGTTGCA-ATACGTTAGAATAAAATTACAA-TGTCAAATC
1 AAAGCTACAAATCCTATACCCCTGAAGTTGTAGGGA-G-TAGAATAAAATTACAATTGT-GAATC
*
26344467 TTATCTCCCTGAAGATACAGTGGAGCAA-AA
63 TTATCTCCCTGAAGTTACAGTGGAGCAAGAA
* * * * ** * ** * *
26344497 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGG-GTCAGATTGAAGCTATAACAGCGAATT
1 -AAAGCTACAAATCCTATACCCCTGAAGTTGTAG-GGAGT-AGAATAAAATTACAATTGTGAATC
* * ** *
26344561 TTGTCTCCTTGAAGTTACAGTGGAATAAGAT
63 TTATCTCCCTGAAGTTACAGTGGAGCAAGAA
* * *
26344592 GAAGTTACAAATCCTATACCCTTGAAGTTGTA
1 AAAGCTACAAATCCTATACCCCTGAAGTTGTA
26344624 ATGGAATAGA
Statistics
Matches: 246, Mismatches: 56, Indels: 24
0.75 0.17 0.07
Matches are distributed among these distances:
92 1 0.00
93 5 0.02
94 232 0.94
95 8 0.03
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (93 bp):
AAAGCTACAAATCCTATACCCCTGAAGTTGTAGGGAGTAGAATAAAATTACAATTGTGAATCTTA
TCTCCCTGAAGTTACAGTGGAGCAAGAA
Found at i:26344422 original size:188 final size:188
Alignment explanation
Indices: 26344194--26344621 Score: 479
Period size: 188 Copynumber: 2.3 Consensus size: 188
26344184 TCTATATTCC
* * ** * ** *
26344194 TGAAGTTGCAGT-GAATC-AGATTAAAGCTACAATTCCTATACCCTTGAAGTTTTAGGGGGTCGG
1 TGAAGTTACAGTGGAA-CAAGA-TAAAGCTACAAATCCTATACCCTTGAAGTTGCAAGACGTCAG
* * *
26344257 AATAAAATTACAATTGT-GAATCTTATCTCTCTGAAGTTACAGTGGAGCAAGAA-AAAACTACAA
64 AATAAAATTACAA-TGTCAAATCTTATCTCCCTGAAGATACAGTGGAGCAA-AATAAAACTACAA
* * * *
26344320 ACCCTATATCCTTAAAGTTGTAGTGGAAT-AGATTGAAACTACAATAGCGAATCTTATCCCCT
127 ACCCTATACCCCTAAAGTTGCAGTGG-ATCAGATTGAAACTACAACAGCGAATCTTATCCCCT
* * * * *
26344382 TGAAGTTACAGTGGAGCAAGATAAAGCTACAAGTCCTATACCCCTGAAGTTGCAATACGTTAGAA
1 TGAAGTTACAGTGGAACAAGATAAAGCTACAAATCCTATACCCTTGAAGTTGCAAGACGTCAGAA
* * *
26344447 TAAAATTACAATGTCAAATCTTATCTCCCTGAAGATACAGTGGAGCAAAATGAAGCTACAAATCC
66 TAAAATTACAATGTCAAATCTTATCTCCCTGAAGATACAGTGGAGCAAAATAAAACTACAAACCC
* * * * * * *
26344512 TATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGCTATAACAGCGAATTTTGTCTCCT
131 TATACCCCTAAAGTTGCAGTGGATCAGATTGAAACTACAACAGCGAATCTTATCCCCT
* * *
26344570 TGAAGTTACAGTGGAATAAGATGAAGTTACAAATCCTATACCCTTGAAGTTG
1 TGAAGTTACAGTGGAACAAGATAAAGCTACAAATCCTATACCCTTGAAGTTG
26344622 TAATGGAATA
Statistics
Matches: 200, Mismatches: 35, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
187 6 0.03
188 189 0.94
189 5 0.03
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.28
Consensus pattern (188 bp):
TGAAGTTACAGTGGAACAAGATAAAGCTACAAATCCTATACCCTTGAAGTTGCAAGACGTCAGAA
TAAAATTACAATGTCAAATCTTATCTCCCTGAAGATACAGTGGAGCAAAATAAAACTACAAACCC
TATACCCCTAAAGTTGCAGTGGATCAGATTGAAACTACAACAGCGAATCTTATCCCCT
Found at i:26344635 original size:94 final size:93
Alignment explanation
Indices: 26344275--26344688 Score: 418
Period size: 94 Copynumber: 4.4 Consensus size: 93
26344265 TACAATTGTG
** * * * * *
26344275 AATCTTATCT-CTCTGAAGTTACAGTGGAGCAAGAAAAAACTACAAACCCTATATCCTTAAAGTT
1 AATCTTATCTCCT-TGAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTT
* * * *
26344339 GTAGTGGAATAGATTGAAACTACAATAGCG
65 GCAATGG-ATAGATTGAAACTACAACAGCA
* * *
26344369 AATCTTATCCCCTTGAAGTTACAGTGGAGCAAGATAAAGCTACAAGTCCTATACCCCTGAAGTTG
1 AATCTTATCTCCTTGAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTG
* * * * * *
26344434 CAATACGTTAGAATAAAATTACAA-TGTCA
66 CAAT-GGATAGATTGAAACTACAACAG-CA
* * *
26344463 AATCTTATCTCCCTGAAGATACAGTGGAGCAAAATGAAGCTACAAATCCTATACCCCTGAAGTTG
1 AATCTTATCTCCTTGAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTG
* * * * *
26344528 CAGTGGGTCAGATTGAAGCTATAACAGCG
66 CAATGGAT-AGATTGAAACTACAACAGCA
* * ** * *
26344557 AATTTTGTCTCCTTGAAGTTACAGTGGAATAAGATGAAGTTACAAATCCTATACCCTTGAAGTTG
1 AATCTTATCTCCTTGAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTG
*
26344622 TAATGGAATAGATTGAAACTACAACAGCA
66 CAATGG-ATAGATTGAAACTACAACAGCA
* * *
26344651 AACCTTATCTCCTTGAAGTTGCAATGGAGCAAGATGAA
1 AATCTTATCTCCTTGAAGTTACAGTGGAGCAAGATGAA
26344689 ACTGTGACAC
Statistics
Matches: 259, Mismatches: 55, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
93 3 0.01
94 251 0.97
95 5 0.02
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (93 bp):
AATCTTATCTCCTTGAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTG
CAATGGATAGATTGAAACTACAACAGCA
Found at i:26345982 original size:15 final size:15
Alignment explanation
Indices: 26345964--26345994 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26345954 TAATTTCGTC
26345964 CTATTTCATTTTTAT
1 CTATTTCATTTTTAT
*
26345979 CTATTTTATTTTTAT
1 CTATTTCATTTTTAT
26345994 C
1 C
26345995 CCTTTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.13, G:0.00, T:0.68
Consensus pattern (15 bp):
CTATTTCATTTTTAT
Found at i:26346000 original size:15 final size:15
Alignment explanation
Indices: 26345966--26346004 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
26345956 ATTTCGTCCT
* *
26345966 ATTTCATTTTTATCT
1 ATTTTATTTTTATCC
26345981 ATTTTATTTTTATCC
1 ATTTTATTTTTATCC
*
26345996 CTTTTATTT
1 ATTTTATTT
26346005 CATTTTCGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.18, C:0.13, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTATTTTTATCC
Found at i:26346617 original size:19 final size:17
Alignment explanation
Indices: 26346575--26346620 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 17
26346565 TATTATTATT
26346575 TCTTATTATTGTATTCA
1 TCTTATTATTGTATTCA
*
26346592 TCATATTATTGTCATTTCA
1 TCTTATTATTGT-A-TTCA
*
26346611 TTTTATTATT
1 TCTTATTATT
26346621 TATGTTGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 11 0.46
18 1 0.04
19 12 0.50
ACGTcount: A:0.24, C:0.11, G:0.04, T:0.61
Consensus pattern (17 bp):
TCTTATTATTGTATTCA
Found at i:26351823 original size:32 final size:32
Alignment explanation
Indices: 26351773--26351836 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
26351763 CTCTAATGGA
* * *
26351773 AATTCCTGCAGTCATCCTCGATTTATTAGTGT
1 AATTCCCGCAGCCATCCTCGACTTATTAGTGT
*
26351805 AATTCCCGCAGCCGTCCTCGACTTATTAGTGT
1 AATTCCCGCAGCCATCCTCGACTTATTAGTGT
26351837 CCTCCCTGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.36
Consensus pattern (32 bp):
AATTCCCGCAGCCATCCTCGACTTATTAGTGT
Found at i:26352837 original size:112 final size:110
Alignment explanation
Indices: 26352640--26352861 Score: 347
Period size: 112 Copynumber: 2.0 Consensus size: 110
26352630 AACAGGCGGC
* * *
26352640 GTCCCTTGTGCAGGAGCAGCCGCTACGCTCTCAACGTCATCCGCTAAGGTTCCTTCTACACCGGG
1 GTCCCTTGTGCAGGAGAAGCCGCTACACTCTCAACGTCATCCGCCAAGGTTCCTTCTACACCGGG
*
26352705 GTCCATTTACTAATCAAAACAAAAACATTTTAACCGTCAGAAGTCAT
66 ATCCATTTACTAATCAAAAC-AAAA-ATTTTAACCGTCAGAAGTCAT
* *
26352752 GTCCCTTGTGCAGGAGAAGCCGCTACACTTTCAATGTCATCCGCCAAGGTT-CTCTCTACACCGG
1 GTCCCTTGTGCAGGAGAAGCCGCTACACTCTCAACGTCATCCGCCAAGGTTCCT-TCTACACCGG
*
26352816 GATCCATTTACTAATCAAAACATAAATTTTAACCGTCAGAAGTCAT
65 GATCCATTTACTAATCAAAACAAAAATTTTAACCGTCAGAAGTCAT
26352862 CACACAGTTA
Statistics
Matches: 102, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
110 21 0.21
111 5 0.05
112 76 0.75
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (110 bp):
GTCCCTTGTGCAGGAGAAGCCGCTACACTCTCAACGTCATCCGCCAAGGTTCCTTCTACACCGGG
ATCCATTTACTAATCAAAACAAAAATTTTAACCGTCAGAAGTCAT
Found at i:26354554 original size:29 final size:29
Alignment explanation
Indices: 26354491--26354558 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
26354481 TAATCAACCG
26354491 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
26354520 CACACACTTAGTGCCATGCA-TTTGAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
26354549 CGCACACTTA
1 CGCACACTTA
26354559 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:26354728 original size:29 final size:29
Alignment explanation
Indices: 26354665--26354732 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
26354655 TACTCAACCG
26354665 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
26354694 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
26354723 CGCACACTTA
1 CGCACACTTA
26354733 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:26354873 original size:29 final size:30
Alignment explanation
Indices: 26354834--26354912 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
26354824 CTTAATAATC
26354834 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
26354864 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
26354893 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26354913 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:26354906 original size:174 final size:174
Alignment explanation
Indices: 26354380--26354881 Score: 932
Period size: 174 Copynumber: 2.9 Consensus size: 174
26354370 AACTCAAGGT
* *
26354380 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
26354445 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
26354510 ACTTTAAACTCACACACTTAGTGCCATGCATTTGAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
26354554 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
26354619 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATACTCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
26354684 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
26354728 ACTTACCTTTTCCGCTGTCCAAAATCGACTCAGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
26354793 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
26354858 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
26354882 TGTACAATTT
Statistics
Matches: 319, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 319 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:26358579 original size:40 final size:40
Alignment explanation
Indices: 26358516--26358748 Score: 317
Period size: 40 Copynumber: 5.8 Consensus size: 40
26358506 ATTTGAATTT
* *
26358516 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGAGTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGA-TA
* *
26358556 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATA
* *
26358596 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTG--ATA
*
26358638 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATA
*
26358678 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGATA
** *
26358718 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
26358749 TTGTGGTAAT
Statistics
Matches: 176, Mismatches: 12, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 130 0.74
41 6 0.03
42 37 0.21
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATA
Found at i:26358667 original size:82 final size:81
Alignment explanation
Indices: 26358516--26358748 Score: 326
Period size: 82 Copynumber: 2.9 Consensus size: 81
26358506 ATTTGAATTT
* * * * *
26358516 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGAGTATATCCGGGCTAAGACCCGCAGGCA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAATATATCCGGGCTAAGACCCGAAGGCA
* *
26358580 TTTGTGCGAGTTGATA
66 ATTGTGCAAGTTGATA
*
26358596 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-ATATATCCGGGCTAAGACCCGAAGGC
26358661 AATTGTGCAAGTTGATA
65 AATTGTGCAAGTTGATA
* * ** *
26358678 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-CTATGCCCGGGTTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAATATATCCGGGCTAAGACCCGAAGGCA
26358742 ATTGTGC
66 ATTGTGC
26358749 TTGTGGTAAT
Statistics
Matches: 137, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
80 60 0.44
81 3 0.02
82 74 0.54
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (81 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAATATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCAAGTTGATA
Found at i:26358733 original size:122 final size:122
Alignment explanation
Indices: 26358516--26358748 Score: 360
Period size: 122 Copynumber: 1.9 Consensus size: 122
26358506 ATTTGAATTT
* * *
26358516 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGAGTATATCCGGGCTAAGACCCGCAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGAGTATATCCGGGCTAAGACCCGAAGGCAT
* * * *
26358581 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
66 TCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATA
26358638 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGA-TATATCCGGGCTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAG-TGAGTATATCCGGGCTAAGACCCGAAGGCA
* * *
26358702 TTCGTGCGAGTTGCTATGCCCGGGTTAAGACCCGAAGGCAATTGTGC
65 TTCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTGTGC
26358749 TTGTGGTAAT
Statistics
Matches: 100, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
122 97 0.97
123 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (122 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGAGTATATCCGGGCTAAGACCCGAAGGCAT
TCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATA
Found at i:26360706 original size:40 final size:40
Alignment explanation
Indices: 26360624--26360718 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
26360614 CCATCTTTGT
* * * *
26360624 CCAACCCAACACACC-A-TGTGGGGATAAAATCGACCCAC
1 CCAACCCTACACACCAAGTATGGGGATAAAATCAACCAAC
* * *
26360662 CCAACCTTACACACCAAGTATGGGGGTAAAATCAACCAAT
1 CCAACCCTACACACCAAGTATGGGGATAAAATCAACCAAC
26360702 CCAACCCTACACACCAA
1 CCAACCCTACACACCAA
26360719 ATGGTACCGT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
38 13 0.28
39 1 0.02
40 33 0.70
ACGTcount: A:0.39, C:0.36, G:0.13, T:0.13
Consensus pattern (40 bp):
CCAACCCTACACACCAAGTATGGGGATAAAATCAACCAAC
Found at i:26362594 original size:30 final size:30
Alignment explanation
Indices: 26362559--26362618 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
26362549 TATTTTATTA
26362559 TTAATTTTGTTATTATTTTAAAGACATTTG
1 TTAATTTTGTTATTATTTTAAAGACATTTG
* * *
26362589 TTAATTTTTTTATTATTTTAGAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGACATTTG
26362619 CTTGTTAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.03, G:0.12, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGACATTTG
Found at i:26364981 original size:30 final size:30
Alignment explanation
Indices: 26364927--26364983 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
26364917 CAACAGACGA
* *
26364927 CACACGGCCATGTCACCCAGTCGTGTGTCT
1 CACACGGCCAAGTCACACAGTCGTGTGTCT
26364957 CACACGGCCAAGTCACAC-GCTCGTGTG
1 CACACGGCCAAGTCACACAG-TCGTGTG
26364984 GACCTAAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.19, C:0.37, G:0.25, T:0.19
Consensus pattern (30 bp):
CACACGGCCAAGTCACACAGTCGTGTGTCT
Found at i:26366663 original size:35 final size:35
Alignment explanation
Indices: 26366624--26366697 Score: 132
Period size: 35 Copynumber: 2.1 Consensus size: 35
26366614 GTTTACTTAA
26366624 ATTCCTATTTAGTCCTTAAA-TCGAGACTAATTTTT
1 ATTCCTATTTAGTCCTTAAACT-GAGACTAATTTTT
26366659 ATTCCTATTTAGTCCTTAAACTGAGACTAATTTTT
1 ATTCCTATTTAGTCCTTAAACTGAGACTAATTTTT
26366694 ATTC
1 ATTC
26366698 TTCTCATTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
35 37 0.97
36 1 0.03
ACGTcount: A:0.28, C:0.18, G:0.08, T:0.46
Consensus pattern (35 bp):
ATTCCTATTTAGTCCTTAAACTGAGACTAATTTTT
Found at i:26383552 original size:12 final size:12
Alignment explanation
Indices: 26383532--26383567 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
26383522 ATTCATTTGA
*
26383532 CATTTATGCATT
1 CATTCATGCATT
26383544 CATTCATGCATT
1 CATTCATGCATT
*
26383556 CATTCATTCATT
1 CATTCATGCATT
26383568 GCATATCTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:26392400 original size:75 final size:73
Alignment explanation
Indices: 26391836--26393205 Score: 1607
Period size: 75 Copynumber: 18.5 Consensus size: 73
26391826 TTCCGTTTTC
** *
26391836 AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
26391901 TCTGTTT-
66 TCTGTTTA
** * * * ** * ** *
26391908 TCAAAATTCAACCCATATTACGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
26391973 TCTGTTT-
66 TCTGTTTA
** ** *
26391980 TCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
26392045 TCTGTTT-
66 TCTGTTTA
** * * * ** * ** *
26392052 TCAAAATTCAACCCATATTACGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
26392117 TCTGTTT-
66 TCTGTTTA
** * *
26392124 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCA
26392188 ATTTCTGTCTTTCA
63 ATTTCTG--TTT-A
** * ** *
26392202 AAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAAT
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
26392267 TTCTGTTT-
65 TTCTGTTTA
** * *
26392275 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACACGCTGAGGTAATTTCGATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
26392340 TCTGTTGTAA
66 TCTGTT-T-A
* *
26392350 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACACGCTGAGGTAATTTCGATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
26392415 TCTGTTGTAA
66 TCTGTT-T-A
* *
26392425 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACACGCTGAGGTAATTTCGATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
26392490 TCTGTTGTAA
66 TCTGTT-T-A
* *
26392500 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACACGCTGAGGTAATTTCGATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
26392565 TCTGTTGTAA
66 TCTGTT-T-A
* *
26392575 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACACGCTGAGGTAATTTCGATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
26392640 TCTGTTGTAA
66 TCTGTT-T-A
* *
26392650 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACACGCTGAGGTAATTTCGATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
26392715 TCTGTTGTAA
66 TCTGTT-T-A
*
26392725 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
26392790 TCTGTTT-
66 TCTGTTTA
** * ** * * * *
26392797 TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATG-TTATGGTATTTTCAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA-GGTAATTTCAAT
26392861 TTCTGCCTTTCA
65 TTCTG--TTT-A
*
26392873 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
26392938 TCTGTTT-
66 TCTGTTTA
** * ** * * * *
26392945 TCAAAATTCAACT-ATATTGCGAGAAATGAGTTGAGCCTCAAGACATG-TTATGGTATTTTCAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA-GGTAATTTCAAT
26393008 TTCTGCCTTTCA
65 TTCTG--TTT-A
*
26393020 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
26393085 TCTGTTT-
66 TCTGTTTA
** * ** * * * *
26393092 TCAAAATTCAACT-ATATTGCGAGAAATGAGTTGAGCCTCAAGACATG-TTATGGTATTTTCAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA-GGTAATTTCAAT
26393155 TTCTGCCTTTCA
65 TTCTG--TTT-A
26393167 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
26393206 TGGGTCATAC
Statistics
Matches: 1154, Mismatches: 113, Indels: 58
0.87 0.09 0.04
Matches are distributed among these distances:
70 4 0.00
71 93 0.08
72 357 0.31
73 12 0.01
74 33 0.03
75 464 0.40
76 127 0.11
77 27 0.02
78 5 0.00
79 31 0.03
80 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (73 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
TCTGTTTA
Found at i:26393006 original size:147 final size:145
Alignment explanation
Indices: 26391832--26393245 Score: 1808
Period size: 150 Copynumber: 9.6 Consensus size: 145
26391822 TTACTTCCGT
**
26391832 TTTC-AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTT
1 TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTT
* * *
26391896 CAATTTCTGTTTTCAAAATTCAACCCATATTACGAGAAATGAGTTGAGCCTCAAGACACATTGAG
66 CAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT-AG
26391961 GTATTTTCAATTTCTG
130 GTATTTTCAATTTCTG
**
26391977 TTTTC---AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATT
1 -TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
* * *
26392039 TCAATTTCTGTTTTCAAAATTCAACCCATATTACGAGAAATGAGTTGAGCCTCAAGACACATTGA
65 TCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT-A
26392104 GGTATTTTCAATTTCTG
129 GGTATTTTCAATTTCTG
* * *
26392121 TTTTC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTAT
1 -TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTAA
26392183 TTTCAATTTCTGTCTTTCAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
63 TTTCAATTTCTGT-TTTC----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
*
26392248 ACATTGAGGTATTTTCAATTTCTG
123 ACGTT-AGGTATTTTCAATTTCTG
* *
26392272 TTTTC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACACGCTGAGGTAATT
1 -TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
* ** * ** * *
26392334 TCGATTTCTGTTGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACACGC
65 TCAATTTCTGTT-T--TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-
* * *
26392399 TGAGGTAATTTCGATTTCTG
126 TTAGGTATTTTCAATTTCTG
* * *
26392419 TTGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACACGCTGAGGTAATT
1 TT-TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
* ** * ** * *
26392484 TCGATTTCTGTTGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACACGC
65 TCAATTTCTGTT-T--TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-
* * *
26392549 TGAGGTAATTTCGATTTCTG
126 TTAGGTATTTTCAATTTCTG
* * *
26392569 TTGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACACGCTGAGGTAATT
1 TT-TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
* ** * ** * *
26392634 TCGATTTCTGTTGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACACGC
65 TCAATTTCTGTT-T--TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG-
* * *
26392699 TGAGGTAATTTCGATTTCTG
126 TTAGGTATTTTCAATTTCTG
*
26392719 TTGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
1 TT-TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
*
26392784 TCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTTAT
65 TCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTA-
26392849 GGTATTTTCAATTTCTG
129 GGTATTTTCAATTTCTG
26392866 CCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
1 --TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
*
26392931 TTCAATTTCTGTTTTCAAAATTCAACT-ATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTTA
64 TTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTA
26392995 TGGTATTTTCAATTTCTG
129 -GGTATTTTCAATTTCTG
26393013 CCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
1 --TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
*
26393078 TTCAATTTCTGTTTTCAAAATTCAACT-ATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTTA
64 TTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTA
26393142 TGGTATTTTCAATTTCTG
129 -GGTATTTTCAATTTCTG
* * *
26393160 CCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCATACGCTGAGGTG
1 --TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCTGAGGTA
* *
26393225 TTTTCCATTTCTGTTCTTCAA
62 ATTTCAATTTCTGTT-TTCAA
26393246 TTTCTATTTT
Statistics
Matches: 1202, Mismatches: 45, Indels: 38
0.94 0.04 0.03
Matches are distributed among these distances:
144 182 0.15
146 33 0.03
147 367 0.31
148 89 0.07
149 52 0.04
150 371 0.31
151 108 0.09
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (145 bp):
TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTT
CAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAGG
TATTTTCAATTTCTG
Found at i:26404895 original size:13 final size:13
Alignment explanation
Indices: 26404863--26404896 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
26404853 ACCCTGATTC
26404863 TATAAAAAACTTA
1 TATAAAAAACTTA
*
26404876 TAAAAAAAACTTA
1 TATAAAAAACTTA
*
26404889 TTTAAAAA
1 TATAAAAA
26404897 GAAGAAAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (13 bp):
TATAAAAAACTTA
Found at i:26405306 original size:20 final size:20
Alignment explanation
Indices: 26405261--26405309 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
26405251 AATTCAAAAA
* *
26405261 CGATTTAAACATTTTTAACT
1 CGATTGAAACATTTTTAAAT
26405281 -GTATTGAAACATTTTTAAAT
1 CG-ATTGAAACATTTTTAAAT
26405301 CGATTGAAA
1 CGATTGAAA
26405310 AATTGTAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 1 0.04
20 23 0.92
21 1 0.04
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (20 bp):
CGATTGAAACATTTTTAAAT
Found at i:26407539 original size:37 final size:37
Alignment explanation
Indices: 26407497--26407571 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
26407487 GGGGAGTGGG
* *
26407497 AAAGAGAAATTGTTGTAGGGATAAGATTTAATAGATA
1 AAAGAGAAATTGTGGTAGGGAAAAGATTTAATAGATA
26407534 AAAGAGAAATTGTGGTAGGGAAAAGATTTAATAGATA
1 AAAGAGAAATTGTGGTAGGGAAAAGATTTAATAGATA
26407571 A
1 A
26407572 TTTTGGTTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.48, C:0.00, G:0.25, T:0.27
Consensus pattern (37 bp):
AAAGAGAAATTGTGGTAGGGAAAAGATTTAATAGATA
Found at i:26408023 original size:16 final size:16
Alignment explanation
Indices: 26408002--26408055 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
26407992 TTTGGTTCAC
26408002 TGTAATAGAATAGAGT
1 TGTAATAGAATAGAGT
*
26408018 TGTAATTGAATAGAGT
1 TGTAATAGAATAGAGT
* *
26408034 TGTATTGGAATAGAGT
1 TGTAATAGAATAGAGT
26408050 TGTAAT
1 TGTAAT
26408056 CAGTAATTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.37, C:0.00, G:0.26, T:0.37
Consensus pattern (16 bp):
TGTAATAGAATAGAGT
Found at i:26408256 original size:26 final size:25
Alignment explanation
Indices: 26408209--26408260 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
26408199 ATGATTACTG
*
26408209 TTATTGTTATTAAATTTTAATAAAA
1 TTATTGTTAATAAATTTTAATAAAA
*
26408234 TTATTGTTAAATATATTTTAATAAAA
1 TTATTGTT-AATAAATTTTAATAAAA
26408260 T
1 T
26408261 AATAATAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (25 bp):
TTATTGTTAATAAATTTTAATAAAA
Found at i:26408401 original size:23 final size:21
Alignment explanation
Indices: 26408370--26408412 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
26408360 TTAAATATGA
26408370 ATTAAAAAATCATAATATATAAT
1 ATTAAAAAA--ATAATATATAAT
*
26408393 ATTATAAAAATAATATATAA
1 ATTAAAAAAATAATATATAA
26408413 CCTACTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
ATTAAAAAAATAATATATAAT
Found at i:26428939 original size:16 final size:16
Alignment explanation
Indices: 26428920--26428950 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26428910 CTTCTTCACT
26428920 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
26428936 TACTTACTTACTTAA
1 TACTCACTTACTTAA
26428951 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:26428956 original size:20 final size:20
Alignment explanation
Indices: 26428917--26428956 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
26428907 AAACTTCTTC
* *
26428917 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
26428937 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
26428957 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Done.