Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 81 of 167
Found at i:26429274 original size:53 final size:53
Alignment explanation
Indices: 26429142--26429392 Score: 217
Period size: 55 Copynumber: 4.7 Consensus size: 53
26429132 ACACGGGTAC
* ** * * *
26429142 CTTACCATTGCCATGAATTGTCATGGTCTTACATGGTA---T-CATTTTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATGAAA
* *
26429191 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATGAAA
* * * * *
26429244 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTAATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTAT-GAAA
* * * * *
26429299 CTTATCAATTCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATGAAA
* * *
26429352 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACACGGTAC
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTAC
26429393 TCTTAAACCC
Statistics
Matches: 164, Mismatches: 27, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
49 35 0.21
52 2 0.01
53 47 0.29
54 15 0.09
55 63 0.38
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATGAAA
Found at i:26429332 original size:55 final size:53
Alignment explanation
Indices: 26429189--26429333 Score: 175
Period size: 53 Copynumber: 2.7 Consensus size: 53
26429179 ATCATTTTGA
* * * *
26429189 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGAGCCTTGCCTAATG
* *
26429242 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTAATAG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGAGCC-TTGCCTAAT-G
* * *
26429296 TAACTTATCAATTCCATGTCTTGACATGGTCTTACATG
1 -AACTCACCAATGCCATGTCTTGACATGGTCTTACATG
26429334 ATTTCCTTGC
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
52 2 0.03
53 43 0.55
54 1 0.01
55 32 0.41
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (53 bp):
AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGAGCCTTGCCTAATG
Found at i:26431742 original size:28 final size:28
Alignment explanation
Indices: 26431700--26431755 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
26431690 GGATAATGAT
*
26431700 GATCTCAAGTTTGAGGATCATATACATA
1 GATCTCAAGTCTGAGGATCATATACATA
26431728 GATCTCAAGTCTGAGGATCATATACATA
1 GATCTCAAGTCTGAGGATCATATACATA
26431756 TTAATCACTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (28 bp):
GATCTCAAGTCTGAGGATCATATACATA
Found at i:26433118 original size:18 final size:19
Alignment explanation
Indices: 26433088--26433139 Score: 63
Period size: 18 Copynumber: 2.7 Consensus size: 19
26433078 TCTAATTTCT
26433088 TTTTATGTTTATTATTATT-
1 TTTTAT-TTTATTATTATTA
*
26433107 TATTTA-TTTATTAATATTA
1 T-TTTATTTTATTATTATTA
26433126 TTTTATTTTATTAT
1 TTTTATTTTATTAT
26433140 GCTTACTGCC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 15 0.54
19 9 0.32
20 4 0.14
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTTATTTTATTATTATTA
Found at i:26434768 original size:18 final size:18
Alignment explanation
Indices: 26434737--26434794 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
26434727 AGCCCATTTG
* *
26434737 TTTTTATGTCTATTTTTC
1 TTTTTATATTTATTTTTC
*
26434755 TTTTTCTATTTATTTTTC
1 TTTTTATATTTATTTTTC
*
26434773 TTTTTATGTTTATTTTGTC
1 TTTTTATATTTATTTT-TC
26434792 TTT
1 TTT
26434795 ATACTTTGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
18 29 0.85
19 5 0.15
ACGTcount: A:0.10, C:0.09, G:0.05, T:0.76
Consensus pattern (18 bp):
TTTTTATATTTATTTTTC
Found at i:26440546 original size:99 final size:100
Alignment explanation
Indices: 26440418--26440696 Score: 332
Period size: 99 Copynumber: 2.7 Consensus size: 100
26440408 TTAAAATTTT
*
26440418 TATTGATACTATCAACCCATAATATAACCAATTAAAATACTTCTATTAAACTGAGAAAAAAATTA
1 TATTGATACTAT-AATCCATAATATAACCAATTAAAATACTTCTATTAAACTGAGAAAAAAATTA
*
26440483 AAAAAATTTAAAAGTCAATCCATAATTGC-GACATTG
65 AAAAAATTTAAAAGTCAATCCATAATT-CTGACAGTG
* **
26440519 TATTGATACTAT-ATCCATAATATAACCAATTAAAGTACTTCTATTAAACCAAGAAAAAAATTAG
1 TATTGATACTATAATCCATAATATAACCAATTAAAATACTTCTATTAAACTGAGAAAAAAATTA-
**
26440583 AAAAAA-TTAAAAGTCAATCCATAATTCTGTTAGTG
65 AAAAAATTTAAAAGTCAATCCATAATTCTGACAGTG
* * *
26440618 TGTTGATACTATCAATCCATAATACAACTAATTAAAATTCAATACTTCTATTAAA-TCGAGAAAA
1 TATTGATACTAT-AATCCATAATATAACCAATT--AA---AATACTTCTATTAAACT-GAGAAAA
*
26440682 AAATAGAAAAAAATT
59 AAAT-TAAAAAAATT
26440697 AAACCGAGAA
Statistics
Matches: 152, Mismatches: 14, Indels: 18
0.83 0.08 0.10
Matches are distributed among these distances:
98 1 0.01
99 82 0.54
100 6 0.04
101 29 0.19
103 2 0.01
106 30 0.20
107 2 0.01
ACGTcount: A:0.49, C:0.14, G:0.07, T:0.30
Consensus pattern (100 bp):
TATTGATACTATAATCCATAATATAACCAATTAAAATACTTCTATTAAACTGAGAAAAAAATTAA
AAAAATTTAAAAGTCAATCCATAATTCTGACAGTG
Found at i:26440722 original size:12 final size:12
Alignment explanation
Indices: 26440705--26440735 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
26440695 TTAAACCGAG
26440705 AAAAATTACAAA
1 AAAAATTACAAA
*
26440717 AAAAATTAGAAA
1 AAAAATTACAAA
26440729 AAAAATT
1 AAAAATT
26440736 GATGGGGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.19
Consensus pattern (12 bp):
AAAAATTACAAA
Found at i:26441725 original size:17 final size:18
Alignment explanation
Indices: 26441684--26441725 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
26441674 AGTTACATTA
26441684 TATATATATATGTTAACT
1 TATATATATATGTTAACT
*
26441702 TATTATATATAT-TTAAGT
1 TA-TATATATATGTTAACT
26441720 TATATA
1 TATATA
26441726 ATAAATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 4 0.18
18 9 0.41
19 9 0.41
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.52
Consensus pattern (18 bp):
TATATATATATGTTAACT
Found at i:26445892 original size:830 final size:827
Alignment explanation
Indices: 26444292--26445950 Score: 3131
Period size: 830 Copynumber: 2.0 Consensus size: 827
26444282 AAAGAAGATA
* *
26444292 TTTATTTATGACAAAATTCATAGAAACAAAATTAAATAAATCAGGGTATTACATGAAAAATAAAA
1 TTTAGTTATGACAAAATTCATAGAAACAAAATTAAATAAATCAGGGTATTACATGAAAAACAAAA
26444357 ATTAGACTTGGTTTAGGGACTATATTGGAATTTAAGAAAACATTGAGTAAAAATTGAAATATTCA
66 ATTAGACTTGGTTTAGGGACTATATTGGAATTTAAGAAAACATTGAGTAAAAATTGAAATATTCA
*
26444422 ATGAGAAATTGAATTGTGTTGTATTGATGTATTTTAATTGTTTTAATTTCGTATTTAACGTCATA
131 ATGAGAAATTGAATTGTGTTGTATTGATGTATTTTAATTGTTTTAATTCCGTATTTAACGTCATA
*
26444487 CCGAAATTTTCAACTAAAAAGAGGAATGATAAAATCGACGATGAATAGCCCAGAATCCATTGTGT
196 CCGAAATTTTCAACTAAAAAGAGGAATAATAAAATCGACGATGAATAGCCCAGAATCCATTGTGT
26444552 TTATATAATCCGAACTAAGTTGTAAATTATTGCATATGGTAAGCATTGGAGGTGAGAATTAATGT
261 TTATATAATCCGAACTAAGTTGTAAATTATTGCATATGGTAAGCATTGGAGGTGAGAATTAATGT
26444617 GTTTTACAATTGAATTAAATTCATAGTTGATTGAATTGGATTAATTTGGCATATGTTATGAATGT
326 GTTTTACAATTGAATTAAATTCATAGTTGATTGAATTGGATTAATTTGGCATATGTTATGAATGT
26444682 ATTGAGTAATTGAAATTGAAATGAATATATGTTTAAATGTGATAATGTGCAAATATGAGAATTGG
391 ATTGAGTAATTGAAATTGAAATGAATATATGTTTAAATGTGATAATGTGCAAATATGAGAATTGG
26444747 ATATTGGTTGTATTTGAAAAGTGAAATCAAACCCTATTAACTGTATCGGGCTGAGTCGGATATAG
456 ATATTGGTTGTATTTGAAAAGTGAAATCAAACCCTATTAACTGTATCGGGCTGAGTCGGATATAG
*
26444812 GTGGCATGCCATAGAATAGGAAGAGTTCAAGGATTTCTTCGACTTTGAGTTGATGAGGCATTGGT
521 GTGGCATGCCATAGAATAGGAAGAGTTCAAAGATTTCTTCGACTTTGAGTTGATGAGGCATTGGT
*
26444877 GCCAATTTTCTTCGGTTTAACCGATGAGACACTGTGTGTCAATTTATATAGCACTGGGCGCAATT
586 GCCAATTTGCTTCGGTTTAACCGATGAGACACTGTGTGTCAATTTATATAGCACTGGGCGCAATT
*
26444942 ATTACTTTGGATTTATCTGATGAGGCACTAGGTGTCAAACTAGTGTGTTGGTTGGATCCGTGTAT
651 ATTACTTTGGATTTATCCGATGAGGCACTAGGTGTCAAACTAGTGTGTTGGTTGGATCCGTGTAT
*
26445007 CAGTCCGATATTTGATACTGAAATGGCATGGTATGTGAAAATGAAATGTGAAATATGTTGTGAAC
716 CAGTCCGATATTTGATACTGAAATGGCATGGAATGTGAAAATGAAATGTGAAATATGTTGTGAAC
26445072 AAATGAAATATATTAGTTATGTACTCATGAATTGAATATGGAATGAG
781 AAATGAAATATATTAGTTATGTACTCATGAATTGAATATGGAATGAG
26445119 TTTAGTTATGACAAAATTCATAGAAACAAAATTAAATAAATCAGGGTATTACATGAAAAACAAAA
1 TTTAGTTATGACAAAATTCATAGAAACAAAATTAAATAAATCAGGGTATTACATGAAAAACAAAA
* *
26445184 ATTAGTCTTGGTTTAGGGACTATATTGGAATTTAAGCAAACATTGAGTAAAAATTGAAATATTCA
66 ATTAGACTTGGTTTAGGGACTATATTGGAATTTAAGAAAACATTGAGTAAAAATTGAAATATTCA
26445249 ATGAGAAATTGAATTGTGTTGTATTGATGTATTTTAATTGTTTTAATTCCGTATTTAACGTCATA
131 ATGAGAAATTGAATTGTGTTGTATTGATGTATTTTAATTGTTTTAATTCCGTATTTAACGTCATA
*
26445314 CCGAAATTTTCAACTAAAAAG-GGAATAATAAAATCGATGATGAATAGCCCAGAATCCACAGTTT
196 CCGAAATTTTCAACTAAAAAGAGGAATAATAAAATCGACGATGAATAGCCCAGAAT-C-CA--TT
*
26445378 GTGTTTATATAATTCGAACTAAGTTGTAAATTATTGCATATGGTAAGCATTGGAGGTGAGAATTA
257 GTGTTTATATAATCCGAACTAAGTTGTAAATTATTGCATATGGTAAGCATTGGAGGTGAGAATTA
26445443 ATGTGTTTTACAATTGAATTAAATTCATAGTTGATTGAATTGGATTAATTTGGCATATGTTATGA
322 ATGTGTTTTACAATTGAATTAAATTCATAGTTGATTGAATTGGATTAATTTGGCATATGTTATGA
26445508 ATGTATTGAGTAATTGAAATTGAAATGAATATATGTTTAAATGTGATAATGTGCAAATATGAGAA
387 ATGTATTGAGTAATTGAAATTGAAATGAATATATGTTTAAATGTGATAATGTGCAAATATGAGAA
26445573 TTGGATATTGGTTGTATTTGAAAAGTGAAATCAAACCCTATTAACTGTATCGGGCTGAGTCGGAT
452 TTGGATATTGGTTGTATTTGAAAAGTGAAATCAAACCCTATTAACTGTATCGGGCTGAGTCGGAT
26445638 ATAGGTGGCATGCCATAGAATAGGAAGAGTTCAAAGATTTCTTCGACTTTGAGTTGATGAGGCAT
517 ATAGGTGGCATGCCATAGAATAGGAAGAGTTCAAAGATTTCTTCGACTTTGAGTTGATGAGGCAT
* *
26445703 TGGTGCCAATTTGCTTTGGTTTAACCGATGAGACATTGTGTGTCAATTTATATAGCACTGGGCGC
582 TGGTGCCAATTTGCTTCGGTTTAACCGATGAGACACTGTGTGTCAATTTATATAGCACTGGGCGC
*
26445768 AATTATTATTTTGGATTTATCCGATGAGGCACTAGGTGTCAAACTAGTGTGTTGGTTGGATCCGT
647 AATTATTACTTTGGATTTATCCGATGAGGCACTAGGTGTCAAACTAGTGTGTTGGTTGGATCCGT
*
26445833 GTATCAGTCCGATATTTGATACTGAAATGGCATGGAATGTGAAACTGAAATGTGAAATATGTTGT
712 GTATCAGTCCGATATTTGATACTGAAATGGCATGGAATGTGAAAATGAAATGTGAAATATGTTGT
26445898 GAACAAATGAAATATATTAGTTATGTACTCATGAATTGAATATGGAATGAG
777 GAACAAATGAAATATATTAGTTATGTACTCATGAATTGAATATGGAATGAG
26445949 TT
1 TT
26445951 GTGCCATTGT
Statistics
Matches: 812, Mismatches: 16, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
826 32 0.04
827 212 0.26
828 2 0.00
830 566 0.70
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (827 bp):
TTTAGTTATGACAAAATTCATAGAAACAAAATTAAATAAATCAGGGTATTACATGAAAAACAAAA
ATTAGACTTGGTTTAGGGACTATATTGGAATTTAAGAAAACATTGAGTAAAAATTGAAATATTCA
ATGAGAAATTGAATTGTGTTGTATTGATGTATTTTAATTGTTTTAATTCCGTATTTAACGTCATA
CCGAAATTTTCAACTAAAAAGAGGAATAATAAAATCGACGATGAATAGCCCAGAATCCATTGTGT
TTATATAATCCGAACTAAGTTGTAAATTATTGCATATGGTAAGCATTGGAGGTGAGAATTAATGT
GTTTTACAATTGAATTAAATTCATAGTTGATTGAATTGGATTAATTTGGCATATGTTATGAATGT
ATTGAGTAATTGAAATTGAAATGAATATATGTTTAAATGTGATAATGTGCAAATATGAGAATTGG
ATATTGGTTGTATTTGAAAAGTGAAATCAAACCCTATTAACTGTATCGGGCTGAGTCGGATATAG
GTGGCATGCCATAGAATAGGAAGAGTTCAAAGATTTCTTCGACTTTGAGTTGATGAGGCATTGGT
GCCAATTTGCTTCGGTTTAACCGATGAGACACTGTGTGTCAATTTATATAGCACTGGGCGCAATT
ATTACTTTGGATTTATCCGATGAGGCACTAGGTGTCAAACTAGTGTGTTGGTTGGATCCGTGTAT
CAGTCCGATATTTGATACTGAAATGGCATGGAATGTGAAAATGAAATGTGAAATATGTTGTGAAC
AAATGAAATATATTAGTTATGTACTCATGAATTGAATATGGAATGAG
Found at i:26447845 original size:17 final size:17
Alignment explanation
Indices: 26447823--26447856 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
26447813 ATTAACATAC
26447823 TGCAAGACAATCAGATT
1 TGCAAGACAATCAGATT
26447840 TGCAAGACAATCAGATT
1 TGCAAGACAATCAGATT
26447857 AAACATAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.24
Consensus pattern (17 bp):
TGCAAGACAATCAGATT
Found at i:26457901 original size:27 final size:27
Alignment explanation
Indices: 26457871--26457927 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
26457861 TATACAATAA
26457871 GGAGTTTTCAATCATGGTACTTATTGT
1 GGAGTTTTCAATCATGGTACTTATTGT
26457898 GGAGTTTTCAATCATGGTACTTATTGT
1 GGAGTTTTCAATCATGGTACTTATTGT
26457925 GGA
1 GGA
26457928 CTGACTCCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.23, C:0.11, G:0.25, T:0.42
Consensus pattern (27 bp):
GGAGTTTTCAATCATGGTACTTATTGT
Found at i:26458851 original size:24 final size:24
Alignment explanation
Indices: 26458823--26458892 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
26458813 TTTTAACAAG
26458823 ATTTAATATTAAATTTAATCTAAT
1 ATTTAATATTAAATTTAATCTAAT
* * *
26458847 ATTTAATATTAGATTAAATTTAAT
1 ATTTAATATTAAATTTAATCTAAT
* *
26458871 ATTAAAATGATTAAGTTTAATC
1 ATT-TAAT-ATTAAATTTAATC
26458893 ATAGTTGAAC
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
24 24 0.67
25 3 0.08
26 9 0.25
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (24 bp):
ATTTAATATTAAATTTAATCTAAT
Found at i:26462152 original size:18 final size:18
Alignment explanation
Indices: 26462124--26462159 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
26462114 TAGAATGTTA
26462124 ATTTGGTATCGAT-TTTT
1 ATTTGGTATCGATATTTT
26462141 ATTTGAGTATCGATATTTT
1 ATTTG-GTATCGATATTTT
26462160 TTTTATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 8 0.47
19 4 0.24
ACGTcount: A:0.22, C:0.06, G:0.17, T:0.56
Consensus pattern (18 bp):
ATTTGGTATCGATATTTT
Found at i:26464196 original size:51 final size:51
Alignment explanation
Indices: 26464139--26464342 Score: 363
Period size: 51 Copynumber: 4.0 Consensus size: 51
26464129 CATTCACATA
26464139 ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
1 ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
26464190 ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
1 ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
* * *
26464241 ACAAAGTGACCTTCACATAGTACCACACTTGTGTCCAAAACTATTTTATTC
1 ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
* *
26464292 ACAAAGTGGCCTTCACATAGTACCACGCTTGTGTCCAAAGCTATTTTATTC
1 ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
26464343 CTAAGATTCA
Statistics
Matches: 147, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 147 1.00
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.30
Consensus pattern (51 bp):
ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
Found at i:26466264 original size:26 final size:26
Alignment explanation
Indices: 26466235--26466342 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
26466225 TGATACAAAT
26466235 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
26466261 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26466287 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26466313 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26466339 TGAT
1 TGAT
26466343 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26476763 original size:22 final size:22
Alignment explanation
Indices: 26476738--26476782 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
26476728 TAAGATAAAA
*
26476738 TATTTAATTTTAAAAGATATTT
1 TATTTAATTCTAAAAGATATTT
* *
26476760 TATTTAATTCTAATATATATTT
1 TATTTAATTCTAAAAGATATTT
26476782 T
1 T
26476783 TAAAACTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (22 bp):
TATTTAATTCTAAAAGATATTT
Found at i:26483437 original size:46 final size:46
Alignment explanation
Indices: 26483379--26483471 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
26483369 CTGCAATAAC
26483379 ATACATACAACGAGTCTATAGTCCATACAAGTATAGAAAACTATGG
1 ATACATACAACGAGTCTATAGTCCATACAAGTATAGAAAACTATGG
26483425 ATACATACAACGAGTCTATAGTCCATACAAGTATAGAAAACTATGG
1 ATACATACAACGAGTCTATAGTCCATACAAGTATAGAAAACTATGG
26483471 A
1 A
26483472 AGAAACACTG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (46 bp):
ATACATACAACGAGTCTATAGTCCATACAAGTATAGAAAACTATGG
Found at i:26487250 original size:24 final size:24
Alignment explanation
Indices: 26487193--26487265 Score: 83
Period size: 24 Copynumber: 3.0 Consensus size: 24
26487183 GGCTACTCAT
* * *
26487193 CTGGAAGAAACAGTTATGTGAGCA
1 CTGGAAGAAGCAGTCATGTCAGCA
*
26487217 CTGGAAGAAGCAGTCATGTCAGCG
1 CTGGAAGAAGCAGTCATGTCAGCA
* * *
26487241 CTGGAAGAAGTAGCCATGGCAGCA
1 CTGGAAGAAGCAGTCATGTCAGCA
26487265 C
1 C
26487266 AATTACCCTT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.33, C:0.19, G:0.32, T:0.16
Consensus pattern (24 bp):
CTGGAAGAAGCAGTCATGTCAGCA
Found at i:26496664 original size:43 final size:43
Alignment explanation
Indices: 26496617--26496729 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 43
26496607 TATAACAGCA
*
26496617 TTAGCTGAGTAAATGGCACTAAGTGTGAGATACAATTATAGCT
1 TTAGCTAAGTAAATGGCACTAAGTGTGAGATACAATTATAGCT
* ** * *
26496660 TTAGCTAATTATTTGGCACTAAGTGTGCGATACAATTCTAGC-
1 TTAGCTAAGTAAATGGCACTAAGTGTGAGATACAATTATAGCT
* * * *
26496702 TTCGACTAATTAATTAGCACTAAGTGTG
1 TTAG-CTAAGTAAATGGCACTAAGTGTG
26496730 TGAGTTCGTT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
42 3 0.05
43 57 0.95
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (43 bp):
TTAGCTAAGTAAATGGCACTAAGTGTGAGATACAATTATAGCT
Found at i:26497786 original size:139 final size:139
Alignment explanation
Indices: 26497536--26497815 Score: 479
Period size: 139 Copynumber: 2.0 Consensus size: 139
26497526 ATGTTTATAG
* * *
26497536 ATTTTTTGGAGATCTGCTCTGGTTAGAAGTCGATGGAGACGTCATCACACTATTCAGCTATTATT
1 ATTTTTTGGAGATCTGCTCTAGTTAGAAGTCGATGGAGACGTCATCACACTATCCAGCTATCATT
* *
26497601 TCGGTAATTAATGTTTTGGGATTTGGTTATGTGGCATGTATAGGCTAGAAGTATATGAATATGTT
66 TCGGTAATTAATATTTTGGGATTTGGTTATATGGCATGTATAGGCTAGAAGTATATGAATATGTT
26497666 TGGTGATGT
131 TGGTGATGT
* * * *
26497675 ATTTTTTGGAGATCTGCTCTAGTTGGAAGTTGATGGAGATGTCATCACACTATCCAGTTATCATT
1 ATTTTTTGGAGATCTGCTCTAGTTAGAAGTCGATGGAGACGTCATCACACTATCCAGCTATCATT
26497740 TCGGTAATTAATATTTTGGGATTTGGTTATATGGCATGTATAGGCTAGAAGTATATGAATATGTT
66 TCGGTAATTAATATTTTGGGATTTGGTTATATGGCATGTATAGGCTAGAAGTATATGAATATGTT
26497805 TGGTGATGT
131 TGGTGATGT
26497814 AT
1 AT
26497816 ATATCTAGCC
Statistics
Matches: 132, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
139 132 1.00
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.40
Consensus pattern (139 bp):
ATTTTTTGGAGATCTGCTCTAGTTAGAAGTCGATGGAGACGTCATCACACTATCCAGCTATCATT
TCGGTAATTAATATTTTGGGATTTGGTTATATGGCATGTATAGGCTAGAAGTATATGAATATGTT
TGGTGATGT
Found at i:26499652 original size:23 final size:23
Alignment explanation
Indices: 26499623--26499706 Score: 141
Period size: 23 Copynumber: 3.7 Consensus size: 23
26499613 GAAATTAATT
* *
26499623 CCACACGGGTGTGTGCCCTATAC
1 CCACACGGGCGTGTGCCCTATTC
*
26499646 ACACACGGGCGTGTGCCCTATTC
1 CCACACGGGCGTGTGCCCTATTC
26499669 CCACACGGGCGTGTGCCCTATTC
1 CCACACGGGCGTGTGCCCTATTC
26499692 CCACACGGGCGTGTG
1 CCACACGGGCGTGTG
26499707 GAGTCTTAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 57 1.00
ACGTcount: A:0.15, C:0.36, G:0.29, T:0.20
Consensus pattern (23 bp):
CCACACGGGCGTGTGCCCTATTC
Found at i:26508702 original size:17 final size:17
Alignment explanation
Indices: 26508676--26508709 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26508666 TAATTTACCC
*
26508676 TTCAATTTACATGCTTT
1 TTCAACTTACATGCTTT
26508693 TTCAACTTACATGCTTT
1 TTCAACTTACATGCTTT
26508710 AATCATCCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.21, G:0.06, T:0.50
Consensus pattern (17 bp):
TTCAACTTACATGCTTT
Found at i:26511594 original size:31 final size:31
Alignment explanation
Indices: 26511546--26511621 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 31
26511536 TGCCCCAAGA
*
26511546 TACATGGGCGTGTGAGTCCACACGGCCCACG
1 TACATGGGCGTGTGAGTCCACACGGCCCACC
* * *
26511577 TACACGGGCATGTGAGTCCACACGGCCTACC
1 TACATGGGCGTGTGAGTCCACACGGCCCACC
26511608 TACATGGGCGTGTG
1 TACATGGGCGTGTG
26511622 TCCCTTTATG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (31 bp):
TACATGGGCGTGTGAGTCCACACGGCCCACC
Found at i:26529330 original size:27 final size:27
Alignment explanation
Indices: 26529300--26529444 Score: 177
Period size: 27 Copynumber: 5.4 Consensus size: 27
26529290 ATTACCAAAG
* * *
26529300 TACCCCCGACTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
26529327 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
26529354 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
26529381 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
26529408 TACCCTCGATTGT-GA-AATTACCGTTT
1 TACCCTCGATT-TACAGAATTACCGTTT
*
26529434 TACCTTCGATT
1 TACCCTCGATT
26529445 GTGAAATTAC
Statistics
Matches: 107, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
26 20 0.19
27 86 0.80
28 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.11, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:26529347 original size:54 final size:53
Alignment explanation
Indices: 26529273--26529402 Score: 127
Period size: 54 Copynumber: 2.4 Consensus size: 53
26529263 ATTATTGAAA
*
26529273 TACCCTCGACTTGTAA-AATTACCAAAGTACCCCCGACTTACATAATTACCGTTT
1 TACCCTCGA-TT-TAAGAATTACCAAAGTACCCCCGACTTACAGAATTACCGTTT
**** * * * *
26529327 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTA-AGAATTACCAAAGTACCCCCGACTTACAGAATTACCGTTT
*
26529381 TACCCTTGATTTATAGAATTAC
1 TACCCTCGATTTA-AGAATTAC
26529403 TGTTTTACCC
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
52 2 0.03
53 3 0.05
54 58 0.92
ACGTcount: A:0.29, C:0.25, G:0.10, T:0.36
Consensus pattern (53 bp):
TACCCTCGATTTAAGAATTACCAAAGTACCCCCGACTTACAGAATTACCGTTT
Found at i:26529463 original size:26 final size:26
Alignment explanation
Indices: 26529408--26529561 Score: 94
Period size: 27 Copynumber: 5.8 Consensus size: 26
26529398 ATTACTGTTT
***
26529408 TACCCTCGATTGTGAAATTACCGTTT
1 TACCCTCGATTGTGAAATTACCGAAA
* *
26529434 TACCTTCGATTGTGAAATTACTGAAA
1 TACCCTCGATTGTGAAATTACCGAAA
* * * *
26529460 TACCC-CTATAGGGTAGAATTACCAAAA
1 TACCCTCGATTGTG-A-AATTACCGAAA
* * * *
26529487 TACCCCTAGTTTGTAAAATTACCAAAA
1 TA-CCCTCGATTGTGAAATTACCGAAA
* *
26529514 TACCACTGGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTGTGAAATTACCGAAA
* * *
26529541 TATCCTCAATTCGTAAAATTA
1 TACCCTCGATT-GTGAAATTA
26529562 TTAAAATACC
Statistics
Matches: 97, Mismatches: 25, Indels: 11
0.73 0.19 0.08
Matches are distributed among these distances:
25 5 0.05
26 32 0.33
27 54 0.56
28 4 0.04
29 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.32
Consensus pattern (26 bp):
TACCCTCGATTGTGAAATTACCGAAA
Found at i:26529506 original size:27 final size:27
Alignment explanation
Indices: 26529476--26529613 Score: 109
Period size: 27 Copynumber: 5.1 Consensus size: 27
26529466 TATAGGGTAG
*
26529476 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* ** *
26529503 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
* * *
26529530 AATTACCGAAATA-TCCTCAATTCGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
** **
26529557 AATTATTAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAATTTGTAA
* *
26529584 AATTA-CAGAAATACCCTTAACTTTCTAA
1 AATTACCA-AAATACCCCTAA-TTTGTAA
26529612 AA
1 AA
26529614 ATTATAGAAA
Statistics
Matches: 86, Mismatches: 21, Indels: 7
0.75 0.18 0.06
Matches are distributed among these distances:
26 3 0.03
27 73 0.85
28 10 0.12
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:26529662 original size:27 final size:27
Alignment explanation
Indices: 26529555--26529662 Score: 94
Period size: 27 Copynumber: 3.9 Consensus size: 27
26529545 CTCAATTCGT
* * * *
26529555 AAAATTATTAAAATACCCCTAATTTAC
1 AAAATTACTGAAATACCCTTAGTTTAC
* *
26529582 AAAATTACAGAAATACCCTTAACTTT-C
1 AAAATTACTGAAATACCCTT-AGTTTAC
*
26529609 TAAAAATTA-TAGAAATACCATTAGTTTAC
1 --AAAATTACT-GAAATACCCTTAGTTTAC
*
26529638 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTAGTTT
26529663 GTAGATTTAC
Statistics
Matches: 65, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
27 38 0.58
28 9 0.14
29 18 0.28
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.33
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTAGTTTAC
Found at i:26530628 original size:25 final size:24
Alignment explanation
Indices: 26530590--26530659 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
26530580 AGGAAGTGCT
*
26530590 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
26530614 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
26530639 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
26530660 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:26530672 original size:24 final size:24
Alignment explanation
Indices: 26530589--26530672 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
26530579 GAGGAAGTGC
* *
26530589 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
26530614 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
26530638 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
26530662 TAAAAGAGGCT
1 TAAAAG-GGCT
26530673 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:26530928 original size:31 final size:31
Alignment explanation
Indices: 26530879--26530961 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
26530869 CGCTTACAGT
26530879 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
26530909 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
26530940 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
26530962 TCGAGACTGA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 16 0.31
31 36 0.69
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:26531009 original size:29 final size:28
Alignment explanation
Indices: 26530975--26531029 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
26530965 AGACTGAATT
* *
26530975 AGGGCTTAGGCCCATACTGCTACTGTTTA
1 AGGGCTAAGGCCCAGACTG-TACTGTTTA
26531004 AGGGCTAAGGCCCAGACTGTACTGTT
1 AGGGCTAAGGCCCAGACTGTACTGTT
26531030 ACTGAATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (28 bp):
AGGGCTAAGGCCCAGACTGTACTGTTTA
Found at i:26531049 original size:33 final size:33
Alignment explanation
Indices: 26530967--26531057 Score: 93
Period size: 33 Copynumber: 2.8 Consensus size: 33
26530957 ATATGTCGAG
*
26530967 ACTGAATTAGGGCTTAGGCCCATACTGCTACTGTT
1 ACTGAA-TAGGGCTTAGGCCCAGACTG-TACTGTT
*
26531002 --T--A-AGGGCTAAGGCCCAGACTGTACTGTT
1 ACTGAATAGGGCTTAGGCCCAGACTGTACTGTT
* *
26531030 ACTGAATAGGGCTTTGGCCCAGATTGTA
1 ACTGAATAGGGCTTAGGCCCAGACTGTA
26531058 TTGACACTGT
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
28 7 0.15
29 17 0.37
30 1 0.02
31 1 0.02
32 1 0.02
33 19 0.41
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (33 bp):
ACTGAATAGGGCTTAGGCCCAGACTGTACTGTT
Found at i:26533150 original size:27 final size:27
Alignment explanation
Indices: 26533120--26533180 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
26533110 CGACTTGTAA
*
26533120 AATTACCAAAGTACCCCCGATTTACAT
1 AATTACCAAAGTACCCCCGATTTACAG
**** *
26533147 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCCCGATTTACAG
26533174 AATTACC
1 AATTACC
26533181 GTTTTACCCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCGATTTACAG
Found at i:26533178 original size:54 final size:54
Alignment explanation
Indices: 26533104--26533233 Score: 138
Period size: 54 Copynumber: 2.4 Consensus size: 54
26533094 ATTATTGAAA
*
26533104 TACCCTCGACTTGTA-A-AATTACCAAAGTACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGA-TT-TACAGAATTACCAAAGTACCCCCGATTTACAGAATTACCGTTT
**** * * *
26533158 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCAAAGTACCCCCGATTTACAGAATTACCGTTT
* *
26533212 TACCCTTGATTAACAGAATTAC
1 TACCCTCGATTTACAGAATTAC
26533234 TATTTTACCG
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
52 2 0.03
53 3 0.05
54 59 0.92
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCAAAGTACCCCCGATTTACAGAATTACCGTTT
Found at i:26533181 original size:27 final size:27
Alignment explanation
Indices: 26533131--26533275 Score: 177
Period size: 27 Copynumber: 5.4 Consensus size: 27
26533121 ATTACCAAAG
* *
26533131 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
26533158 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
26533185 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
26533212 TACCCTTGATTAACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
26533239 TACCGTCGATTGT-GA-AATTACCGTTT
1 TACCCTCGATT-TACAGAATTACCGTTT
26533265 TACCCTCGATT
1 TACCCTCGATT
26533276 GTGAAATTAC
Statistics
Matches: 102, Mismatches: 15, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
26 19 0.19
27 83 0.81
ACGTcount: A:0.26, C:0.23, G:0.11, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:26533294 original size:26 final size:26
Alignment explanation
Indices: 26533239--26533409 Score: 101
Period size: 27 Copynumber: 6.4 Consensus size: 26
26533229 ATTACTATTT
* ****
26533239 TACCGTCGATTGTGAAATTACCGTTT
1 TACCCTCGATTGTGAAATTACCAAAA
**
26533265 TACCCTCGATTGTGAAATTACTGAAA
1 TACCCTCGATTGTGAAATTACCAAAA
* * * *
26533291 TACCC-CTATAGGGTAGAATTACAAAAA
1 TACCCTCGATTGTG-A-AATTACCAAAA
* * *
26533318 TACCCCTAGTTTGTAAAATTACCAAAA
1 TA-CCCTCGATTGTGAAATTACCAAAA
* * *
26533345 TACCACTGGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTGTGAAATTACCAAAA
* * *
26533372 TATCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGA-TTGTGAAATTACCAAAA
*
26533399 TACCCTTGATT
1 TACCCTCGATT
26533410 TACAAAATTA
Statistics
Matches: 110, Mismatches: 29, Indels: 12
0.73 0.19 0.08
Matches are distributed among these distances:
25 5 0.05
26 33 0.30
27 66 0.60
28 4 0.04
29 2 0.02
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.32
Consensus pattern (26 bp):
TACCCTCGATTGTGAAATTACCAAAA
Found at i:26533410 original size:27 final size:27
Alignment explanation
Indices: 26533307--26533508 Score: 124
Period size: 27 Copynumber: 7.4 Consensus size: 27
26533297 TATAGGGTAG
* *
26533307 AATTACAAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* *
26533334 AATTACCAAAATACCAC-TGGTTTGTGA
1 AATTACCAAAATACC-CTTGATTTGTAA
* * **
26533361 AATTACCGAAATATCCTCAATTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
**
26533388 AATTACCAAAATACCCTTGATTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
26533415 AATTA-TAGAAATACCCTTGACTTTCTAAA
1 AATTACCA-AAATACCCTTGA-TTTGT-AA
* * * **
26533444 AATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCTTGATTTGTAA
** * *
26533471 AATTACGGAAATACCCTTGGTTTGTAT
1 AATTACCAAAATACCCTTGATTTGTAA
*
26533498 ATTTACCAAAA
1 AATTACCAAAA
26533509 CACCATTGTA
Statistics
Matches: 137, Mismatches: 31, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
26 2 0.01
27 108 0.79
28 7 0.05
29 20 0.15
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:26533418 original size:54 final size:55
Alignment explanation
Indices: 26533307--26533488 Score: 165
Period size: 54 Copynumber: 3.3 Consensus size: 55
26533297 TATAGGGTAG
* * * ***
26533307 AATTACAAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCAC-TGGTTTGTGA
1 AATTACAGAAATACCCTTCAATTTGTAAAATTACCAAAATACC-CTTGGTTTACAA
* * *
26533361 AATTACCGAAATATCC-TCAATTTGTAAAATTACCAAAATACCCTTGATTTACAA
1 AATTACAGAAATACCCTTCAATTTGTAAAATTACCAAAATACCCTTGGTTTACAA
* * * * * *
26533415 AATTATAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAA
1 AATTACAGAAATACCCTTCAATTTGT-AAAATTACCA-AAATACCCTTGGTTTACAA
*
26533471 AATTACGGAAATACCCTT
1 AATTACAGAAATACCCTT
26533489 GGTTTGTATA
Statistics
Matches: 104, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
53 2 0.02
54 55 0.53
55 7 0.07
56 40 0.38
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (55 bp):
AATTACAGAAATACCCTTCAATTTGTAAAATTACCAAAATACCCTTGGTTTACAA
Found at i:26533585 original size:27 final size:27
Alignment explanation
Indices: 26533547--26533611 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
26533537 ACCCCTAATA
*
26533547 GGTAAAAAGACCATAA-AGCCACTGTAG
1 GGTAAAATGACCATAATA-CCACTGTAG
* * * *
26533574 GGTAAAGTGACCGTAATACCCCTGTAT
1 GGTAAAATGACCATAATACCACTGTAG
26533601 GGTAAAATGAC
1 GGTAAAATGAC
26533612 GAATATGCCC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCATAATACCACTGTAG
Found at i:26534457 original size:25 final size:25
Alignment explanation
Indices: 26534429--26534488 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
26534419 GCTAAAATGA
*
26534429 CTCTGCCCCAGTTTACCGAAAAGGG
1 CTCTGCCCCAGTTTACCAAAAAGGG
* *
26534454 CTCTACCCCAGTTTATCAAAAAGGG
1 CTCTGCCCCAGTTTACCAAAAAGGG
*
26534479 CTTTGCCCCA
1 CTCTGCCCCA
26534489 ATTATTAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.23
Consensus pattern (25 bp):
CTCTGCCCCAGTTTACCAAAAAGGG
Found at i:26534493 original size:24 final size:25
Alignment explanation
Indices: 26534429--26534498 Score: 61
Period size: 25 Copynumber: 2.8 Consensus size: 25
26534419 GCTAAAATGA
* * * *
26534429 CTCTGCCCCAGTTTACCGAAAAGGG
1 CTCTACCCCAGATTATCAAAAAGGG
*
26534454 CTCTACCCCAGTTTATCAAAAAGGG
1 CTCTACCCCAGATTATCAAAAAGGG
* * *
26534479 CTTTGCCCCA-ATTATTAAAA
1 CTCTACCCCAGATTATCAAAA
26534499 GAGGCTAGGC
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
24 8 0.21
25 30 0.79
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.26
Consensus pattern (25 bp):
CTCTACCCCAGATTATCAAAAAGGG
Found at i:26534762 original size:31 final size:31
Alignment explanation
Indices: 26534711--26534793 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
26534701 CGCTTACAGT
*
26534711 AAAGGCTTCGG-CTAGTGATATGATTCATGA
1 AAAGGCTTCGGCCCAGTGATATGATTCATGA
*
26534741 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTCATGA
26534772 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
26534794 TCGAGACTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 16 0.32
31 34 0.68
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTCATGA
Found at i:26542705 original size:23 final size:22
Alignment explanation
Indices: 26542673--26542719 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
26542663 ACCGGGCCAT
26542673 AAAAAAATTCATTCAAATTAAA
1 AAAAAAATTCATTCAAATTAAA
* *
26542695 AAAAAACATTCATTCATATTCAA
1 AAAAAA-ATTCATTCAAATTAAA
26542718 AA
1 AA
26542720 TGTCCCTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.28
Consensus pattern (22 bp):
AAAAAAATTCATTCAAATTAAA
Found at i:26544677 original size:48 final size:48
Alignment explanation
Indices: 26544571--26544928 Score: 360
Period size: 48 Copynumber: 7.4 Consensus size: 48
26544561 CATGTCCCGG
* * * * *
26544571 ACATGGTCTTACACTGGCTCTCATACATCGATGTCGATGCCATGTCCCAG
1 ACATGGTCTTACACTAGCTCTCATA-A-CAATGCCGATGCCATGTTCCAA
* * * * *
26544621 ACACGGTCTTACATTGGCTCACATAACAATGCCGATGCCATGTTCTAA
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
* * *** * * *
26544669 ATATGGTCTTACACTGGCT-TGCATATTGAGGCCGATGCCATG-TCTTAG
1 ACATGGTCTTACACTAGCTCT-CATAACAATGCCGATGCCATGTTC-CAA
* * *
26544717 ACATAGTCTTACACTAGCTCTCATAACAATGTCGATGTCATGTTCCAA
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
* * ** *** * * * *
26544765 ATATGGTCTTACACTGGCTAGCATATTGAGGCCGATGTCATGTCCCAG
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
*
26544813 ACATGGTCTTACAGTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
*
26544861 ACATGGTTTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
26544909 ACATGGTCTTACACTAGCTC
1 ACATGGTCTTACACTAGCTC
26544929 ACACATAACC
Statistics
Matches: 249, Mismatches: 55, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
47 2 0.01
48 221 0.89
49 4 0.02
50 22 0.09
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (48 bp):
ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
Found at i:26544742 original size:96 final size:96
Alignment explanation
Indices: 26544573--26544928 Score: 444
Period size: 96 Copynumber: 3.7 Consensus size: 96
26544563 TGTCCCGGAC
* * * * *
26544573 ATGGTCTTACACTGGCTCTCATACATCGATGTCGATGCCATGTCCCAGACACGGTCTTACATTGG
1 ATGGTCTTACACTGGCTCTCAT--ATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
* *
26544638 CTCACATAACAATGCCGATGCCATGTTCTAAAT
64 CTCTCATAACAATGCCGATGCCATGTTCCAAAT
* ** *
26544671 ATGGTCTTACACTGGCT-TGCATATTGAGGCCGATGCCATGTCTTAGACATAGTCTTACACTAGC
1 ATGGTCTTACACTGGCTCT-CATATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
* *
26544735 TCTCATAACAATGTCGATGTCATGTTCCAAAT
65 TCTCATAACAATGCCGATGCCATGTTCCAAAT
** * * *
26544767 ATGGTCTTACACTGGCTAGCATATTGAGGCCGATGTCATGTCCCAGACATGGTCTTACAGTAGCT
1 ATGGTCTTACACTGGCTCTCATATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
*
26544832 CTCATAACAATGCCGATGCCATGTTCCAAAC
66 CTCATAACAATGCCGATGCCATGTTCCAAAT
* * * * * * *
26544863 ATGGTTTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCT
1 ATGGTCTTACACTGGCTCTCATATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
26544928 C
66 C
26544929 ACACATAACC
Statistics
Matches: 222, Mismatches: 34, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
96 201 0.91
97 1 0.00
98 20 0.09
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (96 bp):
ATGGTCTTACACTGGCTCTCATATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
CTCATAACAATGCCGATGCCATGTTCCAAAT
Found at i:26544822 original size:144 final size:144
Alignment explanation
Indices: 26544560--26544931 Score: 399
Period size: 144 Copynumber: 2.6 Consensus size: 144
26544550 AATGCCAATA
* * * * * * *
26544560 CCATGTCCCGGACATGGTCTTACACTGGCTCTCATACATCGATGTCGATGCCATGTCCCAGACAC
1 CCATGTTCCAGACATGGTCTTACACTAGCTCTCATA-A-CAATGTCGATGCCATGTTCCAAACAT
* * * * * *
26544625 GGTCTTACATTGGCTCACATAACAATGCCGATGCCATGTTCTAAATATGGTCTTACACTGGCT-T
64 GGTCTTACACTGGCTCACATAACAAGGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCT
***
26544689 GCATATTGAGGCCGATG
129 -CATAACAAGGCCGATG
* * * *
26544706 CCATG-TCTTAGACATAGTCTTACACTAGCTCTCATAACAATGTCGATGTCATGTTCCAAATATG
1 CCATGTTC-CAGACATGGTCTTACACTAGCTCTCATAACAATGTCGATGCCATGTTCCAAACATG
*** * * *
26544770 GTCTTACACTGGCT-AGCATATTGAGGCCGATGTCATGTCCCAGACATGGTCTTACAGTAGCTCT
65 GTCTTACACTGGCTCA-CATAACAAGGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCT
*
26544834 CATAACAATGCCGATG
129 CATAACAAGGCCGATG
* * *
26544850 CCATGTTCCAAACATGGTTTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAAACATGG
1 CCATGTTCCAGACATGGTCTTACACTAGCTCTCATAACAATGTCGATGCCATGTTCCAAACATGG
*
26544915 TCTTACACTAGCTCACA
66 TCTTACACTGGCTCACA
26544932 CATAACCCTA
Statistics
Matches: 186, Mismatches: 35, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
143 1 0.01
144 150 0.81
145 6 0.03
146 29 0.16
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (144 bp):
CCATGTTCCAGACATGGTCTTACACTAGCTCTCATAACAATGTCGATGCCATGTTCCAAACATGG
TCTTACACTGGCTCACATAACAAGGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCA
TAACAAGGCCGATG
Found at i:26546144 original size:24 final size:24
Alignment explanation
Indices: 26546117--26546164 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
26546107 ACCAAACAAA
26546117 TATCTTCCACTAACCTATTAATAG
1 TATCTTCCACTAACCTATTAATAG
26546141 TATCTTCCACTAACCTATTAATAG
1 TATCTTCCACTAACCTATTAATAG
26546165 GTTAACTTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.04, T:0.38
Consensus pattern (24 bp):
TATCTTCCACTAACCTATTAATAG
Found at i:26554570 original size:27 final size:27
Alignment explanation
Indices: 26554540--26554715 Score: 102
Period size: 27 Copynumber: 6.5 Consensus size: 27
26554530 ATTGAGTCCG
* * *
26554540 CACACTCAGTGCTATATAATCAACTAA
1 CACACTTAGTGCTACATAATCAAATAA
* **
26554567 CACACTTAGTGCTACGTAATCAAATCG
1 CACACTTAGTGCTACATAATCAAATAA
* **
26554594 CACACTTAGTGCTACATAGTCAAACTCG
1 CACACTTAGTGCTACATAATCAAA-TAA
** ** * **
26554622 CACACTTAGTGCCGCATGGTCAATTCG
1 CACACTTAGTGCTACATAATCAAATAA
* ** **
26554649 CACACTTAGTGC-ATCATATTCATTTCG
1 CACACTTAGTGCTA-CATAATCAAATAA
* * **
26554676 CACACTTAGTGCAACATAGTCAAATCG
1 CACACTTAGTGCTACATAATCAAATAA
26554703 CACACTTAGTGCT
1 CACACTTAGTGCT
26554716 GTACAATTTA
Statistics
Matches: 126, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (27 bp):
CACACTTAGTGCTACATAATCAAATAA
Found at i:26554698 original size:54 final size:55
Alignment explanation
Indices: 26554538--26554715 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 55
26554528 ATATTGAGTC
* * * ** * * *
26554538 CGCACACTCAGTGCTATATAATC-AACTAACACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
** * *
26554592 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
* **
26554647 CGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
26554701 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26554716 GTACAATTTA
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
54 60 0.58
55 43 0.42
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:26556993 original size:21 final size:20
Alignment explanation
Indices: 26556956--26556995 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
26556946 CCTTAGAAAC
* *
26556956 AGGGCACACGTCTGTGTGGA
1 AGGGCACACGCCCGTGTGGA
26556976 AGGGCAACACGCCCGTGTGG
1 AGGGC-ACACGCCCGTGTGG
26556996 CCATTAGGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.20, C:0.25, G:0.40, T:0.15
Consensus pattern (20 bp):
AGGGCACACGCCCGTGTGGA
Found at i:26565869 original size:20 final size:21
Alignment explanation
Indices: 26565844--26565883 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26565834 CTCTTGAAAC
26565844 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
26565864 AGGGCAACACGTCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
26565884 TCATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:26568464 original size:22 final size:23
Alignment explanation
Indices: 26568416--26568464 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
26568406 TTCCTTCTAG
* *
26568416 GGTTCACATAGACATACATATAG
1 GGTTCACATAGACAAACATATAA
* *
26568439 GGTTCACATATA-AAACATGTAA
1 GGTTCACATAGACAAACATATAA
26568461 GGTT
1 GGTT
26568465 TGCATAGTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (23 bp):
GGTTCACATAGACAAACATATAA
Found at i:26572506 original size:47 final size:47
Alignment explanation
Indices: 26572389--26572865 Score: 549
Period size: 47 Copynumber: 10.7 Consensus size: 47
26572379 TGTGTACGTG
* * ** *
26572389 TAACGTGGTGCTAAGTGGATATACCATGATTACACGTATTGATACAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
*
26572436 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 -TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
*
26572484 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
* *
26572531 TAACGTGGTGCTAAGTGGATATACCACGG-T---TATA-CG--T--G
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
* * *
26572569 TAACGTGGTACTAAGTGGATATACCACGGTT--A-A-A-CG--T--G
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
* * *
26572607 TAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
* *
26572654 GTAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 -TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
*
26572702 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
*
26572749 TAACGTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG------
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
* *
26572787 TAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
*
26572834 TAACGCGGTGCTAAGTGGATATACCACGGTTA
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA
26572866 AACATGTAAC
Statistics
Matches: 379, Mismatches: 29, Indels: 43
0.84 0.06 0.10
Matches are distributed among these distances:
38 92 0.24
39 3 0.01
40 4 0.01
41 3 0.01
42 2 0.01
43 5 0.01
44 2 0.01
45 2 0.01
46 2 0.01
47 181 0.48
48 83 0.22
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.31
Consensus pattern (47 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT
Found at i:26572583 original size:38 final size:38
Alignment explanation
Indices: 26572531--26572903 Score: 233
Period size: 38 Copynumber: 8.8 Consensus size: 38
26572521 ATTGATTCAT
*
26572531 TAACGTGGTGCTAAGTGGATATACCACGGTTATACGTG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACGTG
*
26572569 TAACGTGGTACTAAGTGGATATACCACGGTTAAACGTG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACGTG
* *
26572607 TAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATG
1 TAACGTGGTGCTAAGTGGATATACCACG-GT-----TA---A-ACGTG
* * * *
26572655 TAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTT--A-A-A-CG--T--G
* * *
26572702 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTT--A-A-A-CG--T--G
*
26572749 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACGTG
* * * *
26572787 TAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTT--A-A-A-CG--T--G
* *
26572834 TAACGCGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACGTG
* *
26572872 TAACATGGTGCTAAGTGGATATGCCACGGTTA
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA
26572904 TACATGTTAA
Statistics
Matches: 278, Mismatches: 31, Indels: 52
0.77 0.09 0.14
Matches are distributed among these distances:
38 121 0.44
39 1 0.00
40 3 0.01
41 1 0.00
42 5 0.02
43 2 0.01
44 5 0.02
45 4 0.01
47 106 0.38
48 30 0.11
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAACGTG
Found at i:26572762 original size:218 final size:218
Alignment explanation
Indices: 26572384--26572818 Score: 798
Period size: 218 Copynumber: 2.0 Consensus size: 218
26572374 AAAAATGTGT
* * *
26572384 ACGTGTAACGTGGTGCTAAGTGGATATACCATGATTACACGTATTGATACATGTAACGTGGTGCT
1 ACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACATGGTGCT
26572449 AAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATGCCACGGT
66 AAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATGCCACGGT
* *
26572514 TACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTA
131 TACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTA
26572579 CTAAGTGGATATACCACGGTTAA
196 CTAAGTGGATATACCACGGTTAA
26572602 ACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACATGGTGCT
1 ACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACATGGTGCT
26572667 AAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATGCCACGGT
66 AAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATGCCACGGT
*
26572732 TACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTG
131 TACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTA
* *
26572797 CTAAGTGGATATGCCATGGTTA
196 CTAAGTGGATATACCACGGTTA
26572819 CATATATTGA
Statistics
Matches: 209, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
218 209 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (218 bp):
ACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACATGGTGCT
AAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATGCCACGGT
TACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTA
CTAAGTGGATATACCACGGTTAA
Found at i:26572845 original size:85 final size:85
Alignment explanation
Indices: 26572702--26572903 Score: 377
Period size: 85 Copynumber: 2.4 Consensus size: 85
26572692 ATTGATTCAT
*
26572702 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGG
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGCGGTGCTAAGTGG
26572767 ATATACCACGGTTAAACATG
66 ATATACCACGGTTAAACATG
*
26572787 TAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTCATTAACGCGGTGCTAAGTGG
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGCGGTGCTAAGTGG
26572852 ATATACCACGGTTAAACATG
66 ATATACCACGGTTAAACATG
*
26572872 TAACATGGTGCTAAGTGGATATGCCACGGTTA
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTA
26572904 TACATGTTAA
Statistics
Matches: 113, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 113 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (85 bp):
TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGCGGTGCTAAGTGG
ATATACCACGGTTAAACATG
Found at i:26575755 original size:42 final size:42
Alignment explanation
Indices: 26575683--26575867 Score: 149
Period size: 42 Copynumber: 4.3 Consensus size: 42
26575673 CATGTCCCTA
* * * *
26575683 ACATGGTCTTATATG-GGTCTCCATACCGATGCCATATCTCAG
1 ACATGGTCTTATACGAAGTCT-CATATCGATGCCATATCCCAG
* * *
26575725 ATATGGTCTTATACGAAGTCTCATGTCGATGCTGATGCCATGTCCCAA
1 ACATGGTCTTATACGAAGTCTCA--T--AT-C-GATGCCATATCCCAG
* * *
26575773 ACATGGTCTTATACG-GGACCTCATATCGATGCCATGTCCCAG
1 ACATGGTCTTATACGAAG-TCTCATATCGATGCCATATCCCAG
* * * *
26575815 ACATGATCTTACACGAAATCTCATATCAATGCCATATCCCAG
1 ACATGGTCTTATACGAAGTCTCATATCGATGCCATATCCCAG
*
26575857 ATATGGTCTTA
1 ACATGGTCTTA
26575868 CATGAAATCA
Statistics
Matches: 114, Mismatches: 20, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
42 72 0.63
43 5 0.04
44 3 0.03
46 2 0.02
47 2 0.02
48 30 0.26
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (42 bp):
ACATGGTCTTATACGAAGTCTCATATCGATGCCATATCCCAG
Found at i:26575825 original size:90 final size:90
Alignment explanation
Indices: 26575671--26575838 Score: 230
Period size: 90 Copynumber: 1.9 Consensus size: 90
26575661 AAATACCAAA
* * * * * *
26575671 GCCATGTCCCTAACATGGTCTTATATGGGTCTCCATACCGATGCCATATCTCAGATATGGTCTTA
1 GCCATGTCCCAAACATGGTCTTATACGGGCCTCCATACCGATGCCATATCCCAGACATGATCTTA
* *
26575736 TACGAAGTCTCATGTCGATGCTGAT
66 CACGAAATCTCATGTCGATGCTGAT
* *
26575761 GCCATGTCCCAAACATGGTCTTATACGGGACCT-CATATCGATGCCATGTCCCAGACATGATCTT
1 GCCATGTCCCAAACATGGTCTTATACGGG-CCTCCATACCGATGCCATATCCCAGACATGATCTT
26575825 ACACGAAATCTCAT
65 ACACGAAATCTCAT
26575839 ATCAATGCCA
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
90 65 0.97
91 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (90 bp):
GCCATGTCCCAAACATGGTCTTATACGGGCCTCCATACCGATGCCATATCCCAGACATGATCTTA
CACGAAATCTCATGTCGATGCTGAT
Found at i:26575868 original size:42 final size:44
Alignment explanation
Indices: 26575709--26575918 Score: 176
Period size: 42 Copynumber: 4.7 Consensus size: 44
26575699 GTCTCCATAC
* * *
26575709 CGATGCCATATCTCAGATATGGTCTTATACGAAGTCTCATGTCGATG
1 CGATGCCATATCCCAGATATGGTCTTACACGAAATCTCA--TC-ATG
* * * * ** *
26575756 CTGATGCCATGTCCCAAACATGGTCTTATACGGGACCTCAT-AT-
1 C-GATGCCATATCCCAGATATGGTCTTACACGAAATCTCATCATG
* * *
26575799 CGATGCCATGTCCCAGACATGATCTTACACGAAATCTCAT-AT-
1 CGATGCCATATCCCAGATATGGTCTTACACGAAATCTCATCATG
* * *
26575841 CAATGCCATATCCCAGATATGGTCTTACATGAAATCACATACCGATG
1 CGATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT--C-ATG
26575888 CCGATGCCATATCCCAGATATGGTCTTACAC
1 -CGATGCCATATCCCAGATATGGTCTTACAC
26575919 TGGCACACAT
Statistics
Matches: 134, Mismatches: 22, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
42 69 0.51
43 1 0.01
44 2 0.01
46 3 0.02
47 1 0.01
48 58 0.43
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (44 bp):
CGATGCCATATCCCAGATATGGTCTTACACGAAATCTCATCATG
Found at i:26575928 original size:48 final size:48
Alignment explanation
Indices: 26575843--26576062 Score: 153
Period size: 48 Copynumber: 4.6 Consensus size: 48
26575833 TCTCATATCA
* * * *
26575843 ATGCCATATCCCAGATATGGTCTTACA-T-GAAATCACATACCGATGCCG
1 ATGCCATGTCCCAGATATGGTCTTACACTAG-CA-CACATACCAACGCCG
* * *
26575891 ATGCCATATCCCAGATATGGTCTTACACTGGCACACATATCAACGCCG
1 ATGCCATGTCCCAGATATGGTCTTACACTAGCACACATACCAACGCCG
** * * * * ***
26575939 ACT-CTTTGTCCCAAACATGGTCCTACACTAGC-CACATATCAACATTG
1 A-TGCCATGTCCCAGATATGGTCTTACACTAGCACACATACCAACGCCG
* * ** *
26575986 ATGCCATGTCCCAGATATGGTCTTACACTAGCTCTCAT-CTTGGATGCCG
1 ATGCCATGTCCCAGATATGGTCTTACACTAGCACACATAC--CAACGCCG
* *
26576035 ATGCCATGTCCCAAACATGGTCTTACAC
1 ATGCCATGTCCCAGATATGGTCTTACAC
26576063 GGGATCTCAT
Statistics
Matches: 136, Mismatches: 29, Indels: 13
0.76 0.16 0.07
Matches are distributed among these distances:
46 1 0.01
47 37 0.27
48 66 0.49
49 31 0.23
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGATATGGTCTTACACTAGCACACATACCAACGCCG
Found at i:26585332 original size:40 final size:40
Alignment explanation
Indices: 26585277--26585657 Score: 633
Period size: 40 Copynumber: 9.5 Consensus size: 40
26585267 ATTAGTCGAC
26585277 AATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACA
26585317 AATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACA
26585357 AATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACA
26585397 AATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACA
26585437 AATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACA
26585477 AATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACA
** *
26585517 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACA
* **
26585557 AATGCCTTTGGGACTTAGCCCGGA-ATTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAGTTCGCACA
* *
26585597 AATGCCTTCGGGACTTAGCCCGGA-ATTAGTCA-CTAGCACA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGT-AGTTCGCACA
*
26585637 AATGCCTTCAGGACTTAGCCC
1 AATGCCTTCGGGACTTAGCCC
26585658 CGTTATCATC
Statistics
Matches: 331, Mismatches: 8, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
39 1 0.00
40 329 0.99
41 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACA
Found at i:26588651 original size:30 final size:30
Alignment explanation
Indices: 26588615--26588675 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
26588605 TTCCCGAGCC
26588615 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * *
26588645 TAGGGGCAAAATTGTAAATTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
26588675 T
1 T
26588676 GAGTTAAGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:26589548 original size:51 final size:51
Alignment explanation
Indices: 26589489--26589679 Score: 269
Period size: 51 Copynumber: 3.8 Consensus size: 51
26589479 CTAGGTTGCA
* * *
26589489 TGTGTAGTACTAAGTGCAAGCTACAATGCGTACCCGATAACTTTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTTGATCACG
* * * * * *
26589540 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-AGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTTGATCACG
*
26589590 TGTGTAGTACTAAGTGCAGGCTACTATGCGTAATC-GATAACTTTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGT-ACCAGATAACTTTGATCACG
26589641 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
26589680 GTTTGGCTAC
Statistics
Matches: 122, Mismatches: 15, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
50 43 0.35
51 79 0.65
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTTGATCACG
Found at i:26589603 original size:101 final size:101
Alignment explanation
Indices: 26589489--26589682 Score: 325
Period size: 101 Copynumber: 1.9 Consensus size: 101
26589479 CTAGGTTGCA
*
26589489 TGTGTAGTACTAAGTGCAAGCTACAATGCGTACCCGATAACTTTGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAAGCTACAATGCGTAACCGATAACTTTGATCACGTGTGTAGTACTAAG
* *
26589554 TGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
66 TGCAGGCTACTACGCGTACCAGATAGTTAGGTCACG
* * *
26589590 TGTGTAGTACTAAGTGCAGGCTACTATGCGTAATCGATAACTTTGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAAGCTACAATGCGTAACCGATAACTTTGATCACGTGTGTAGTACTAAG
*
26589655 TGCAGGCTACTATGCGTACCAGATAGTT
66 TGCAGGCTACTACGCGTACCAGATAGTT
26589683 TGGCTACATA
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
101 86 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAAGCTACAATGCGTAACCGATAACTTTGATCACGTGTGTAGTACTAAG
TGCAGGCTACTACGCGTACCAGATAGTTAGGTCACG
Found at i:26593632 original size:46 final size:46
Alignment explanation
Indices: 26593317--26593632 Score: 232
Period size: 46 Copynumber: 6.7 Consensus size: 46
26593307 ATGTCAATGT
**
26593317 CATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA-GTTGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCTC--ATCTCAATGCCGATGC
* * *
26593364 CATGTCCCAGACATGGTCTTACACTGACT-ATCGTCATCGAGGCCGACGC
1 CATGTCCCAGACATGGTCTTACACTGGCTCATC-TCA---ATGCCGATGC
* * * * ** *
26593413 CATGTCCCAGATATGGCCTTACACTAGCTCTCATATATCTGTGTCGATGC
1 CATGTCCCAGACATGGTCTTACACT-G-GCTC--ATCTCAATGCCGATGC
* * * *
26593463 CATGTCCCAGACATGCTCTTACACTGACACATCTC-GTAGCCGATG-
1 CATGTCCCAGACATGGTCTTACACTGGCTCATCTCAAT-GCCGATGC
* * * * *
26593508 CATGTCCCAGACAT-TTATTACACTGGCTTACGTCTCGAGGCCGATG-
1 CATGTCCCAGACATGGTCTTACACTGGC-T-CATCTCAATGCCGATGC
* *
26593554 CATGTCCCAGACAT-ATCTTACACTAGCTCTCATCTCAATGCCGATGC
1 CATGTCCCAGACATGGTCTTACACT-G-GCTCATCTCAATGCCGATGC
*
26593601 CATGTCCCAGACACGGTCTTACACTGGCTCAT
1 CATGTCCCAGACATGGTCTTACACTGGCTCAT
26593633 AATAACCCAT
Statistics
Matches: 215, Mismatches: 36, Indels: 37
0.75 0.12 0.13
Matches are distributed among these distances:
44 13 0.06
45 19 0.09
46 62 0.29
47 44 0.20
48 13 0.06
49 29 0.13
50 29 0.13
51 2 0.01
53 2 0.01
54 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCATCTCAATGCCGATGC
Found at i:26598197 original size:43 final size:42
Alignment explanation
Indices: 26598149--26598251 Score: 163
Period size: 43 Copynumber: 2.4 Consensus size: 42
26598139 TTCAACGAAC
*
26598149 TCGCACACTTAGTGCCAATTAATT-CTTCGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAAATAATTAC-T-GAAGCTATAATTGTA
26598192 TCGCACACTTAGTGCCAAATAATTAGCTGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAAATAATTA-CTGAAGCTATAATTGTA
26598235 TCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
26598252 TTACATTAAA
Statistics
Matches: 57, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
43 55 0.96
44 1 0.02
45 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (42 bp):
TCGCACACTTAGTGCCAAATAATTACTGAAGCTATAATTGTA
Found at i:26604455 original size:29 final size:29
Alignment explanation
Indices: 26604386--26604501 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
26604376 TACCTATATC
* ** *
26604386 TGGCCCACCAGGCCC-AATCACAACTGTA
1 TGGCCCATCAGGCCCAAATCACATTTATA
* * * **
26604414 CGGTCCATTAGGCCCAAATTGCATTTATA
1 TGGCCCATCAGGCCCAAATCACATTTATA
26604443 TGGCCCATCAGGCCCAAATCACATTTATA
1 TGGCCCATCAGGCCCAAATCACATTTATA
*
26604472 TGGCCCATCAGGCCCAAATCACATTCATA
1 TGGCCCATCAGGCCCAAATCACATTTATA
26604501 T
1 T
26604502 TCATGCTTGC
Statistics
Matches: 72, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
28 11 0.15
29 61 0.85
ACGTcount: A:0.29, C:0.32, G:0.16, T:0.23
Consensus pattern (29 bp):
TGGCCCATCAGGCCCAAATCACATTTATA
Found at i:26610416 original size:46 final size:47
Alignment explanation
Indices: 26610348--26610473 Score: 132
Period size: 46 Copynumber: 2.7 Consensus size: 47
26610338 ATCTCGTAGT
* * * * *
26610348 CGATG-CATGTGCCATATATGTCTTACACTGGC-TTACGTCCCAAGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCACT-CGTCCCAAGGC
* * *
26610394 CGAT-TCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCACTCGTCCCAAGGC
*
26610440 CGATGCCATGTTCCAGACATGGTCTTACACTAGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGC
26610474 TCTCATAATG
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
46 40 0.60
47 14 0.21
48 13 0.19
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGTCTTACACTAGCACTCGTCCCAAGGC
Found at i:26625457 original size:40 final size:40
Alignment explanation
Indices: 26625388--26625508 Score: 156
Period size: 40 Copynumber: 3.0 Consensus size: 40
26625378 CAGATGATAA
* * *
26625388 CGAAGGCATTTGTG-CTAGTGACTAATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCCAACT-ACTATTTCCGGGCTAAGTCC
26625428 CGAAGGCATTTGTGCCAACTACTATTTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCCAACTACTATTTCCGGGCTAAGTCC
* **
26625468 CGAAGGCATTTGTGCGAGTTACTAATTT-CGGGCTAAGTCC
1 CGAAGGCATTTGTGCCAACTACT-ATTTCCGGGCTAAGTCC
26625508 C
1 C
26625509 CACACTATCA
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
40 66 0.90
41 7 0.10
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (40 bp):
CGAAGGCATTTGTGCCAACTACTATTTCCGGGCTAAGTCC
Found at i:26626535 original size:17 final size:17
Alignment explanation
Indices: 26626496--26626536 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
26626486 ATATTACTTG
*
26626496 TGATTATGGAATTGAAT
1 TGATTATGGAATTAAAT
26626513 TGATTATGGAATATAAAT
1 TGATTATGGAAT-TAAAT
26626531 T-ATTAT
1 TGATTAT
26626537 TAACTGTTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (17 bp):
TGATTATGGAATTAAAT
Found at i:26626969 original size:24 final size:24
Alignment explanation
Indices: 26626942--26626994 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
26626932 ACAACCACTG
* *
26626942 CCTCCTACTTTACCACCTGTTATA
1 CCTCCTACTATACCACCTGTGATA
* *
26626966 CCTCCTACTATACCCCCTGTGATG
1 CCTCCTACTATACCACCTGTGATA
26626990 CCTCC
1 CCTCC
26626995 ACCTCCTCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.17, C:0.43, G:0.08, T:0.32
Consensus pattern (24 bp):
CCTCCTACTATACCACCTGTGATA
Found at i:26631683 original size:10 final size:10
Alignment explanation
Indices: 26631668--26631692 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
26631658 GAACTCATAT
26631668 TAGCTTAATC
1 TAGCTTAATC
26631678 TAGCTTAATC
1 TAGCTTAATC
26631688 TAGCT
1 TAGCT
26631693 ATTCCGAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.40
Consensus pattern (10 bp):
TAGCTTAATC
Found at i:26635646 original size:33 final size:33
Alignment explanation
Indices: 26635604--26635671 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
26635594 TTTTGCAACT
26635604 TATGCAAAATAGTCCTTTTAGGTGTTTCCATGC
1 TATGCAAAATAGTCCTTTTAGGTGTTTCCATGC
26635637 TATGCAAAATAGTCCTTTTAGGTGTTTCCATGC
1 TATGCAAAATAGTCCTTTTAGGTGTTTCCATGC
26635670 TA
1 TA
26635672 ACACCTTTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.40
Consensus pattern (33 bp):
TATGCAAAATAGTCCTTTTAGGTGTTTCCATGC
Found at i:26637406 original size:18 final size:18
Alignment explanation
Indices: 26637383--26637435 Score: 106
Period size: 18 Copynumber: 2.9 Consensus size: 18
26637373 GAACTTGCAT
26637383 ACTGTTTACTATTACTGC
1 ACTGTTTACTATTACTGC
26637401 ACTGTTTACTATTACTGC
1 ACTGTTTACTATTACTGC
26637419 ACTGTTTACTATTACTG
1 ACTGTTTACTATTACTG
26637436 TAATGGGCCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.45
Consensus pattern (18 bp):
ACTGTTTACTATTACTGC
Found at i:26641357 original size:40 final size:40
Alignment explanation
Indices: 26641280--26641416 Score: 208
Period size: 40 Copynumber: 3.5 Consensus size: 40
26641270 AAACCAAGTA
** *
26641280 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
26641319 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26641359 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26641399 CCTTCGGG-CTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
26641417 TTATCAATCC
Statistics
Matches: 91, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
39 23 0.25
40 68 0.75
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:26644391 original size:46 final size:45
Alignment explanation
Indices: 26644306--26644439 Score: 146
Period size: 46 Copynumber: 2.9 Consensus size: 45
26644296 CATTGGGTGG
* * *
26644306 TATGTGAGCCAGTGTAAGACATGTCTGGGACATGTATCAGCCACAT
1 TATGAGAGCAAGTGTAAGACATGTCTGGGACATGCATCAGCC-CAT
* * *
26644352 TATGAGAGCTAGTTTAAGACATGTCTGGGAAATGCATCAG--CAT
1 TATGAGAGCAAGTGTAAGACATGTCTGGGACATGCATCAGCCCAT
* *
26644395 TGAGACGAGAGCAAGTGTAAGACATGTCTAGGACATGCATCAGCC
1 T---ATGAGAGCAAGTGTAAGACATGTCTGGGACATGCATCAGCC
26644440 TCAAGATATA
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
43 4 0.05
46 69 0.95
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (45 bp):
TATGAGAGCAAGTGTAAGACATGTCTGGGACATGCATCAGCCCAT
Found at i:26644553 original size:49 final size:49
Alignment explanation
Indices: 26644491--26644611 Score: 156
Period size: 49 Copynumber: 2.5 Consensus size: 49
26644481 TGTTGCGTGT
*
26644491 CAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGC
* * * * *
26644540 CAGTGTACA-ACCTGTCCGGGACATGGCATTGGCCTCGATATATGAAAGT
1 CAGTGTA-AGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
26644589 CAGTGTAAGACCTGTCTGGGACA
1 CAGTGTAAGACCTGTCTGGGACA
26644612 CAGCATCAAC
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
48 2 0.03
49 59 0.95
50 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.21
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
Found at i:26655577 original size:42 final size:41
Alignment explanation
Indices: 26655469--26655585 Score: 103
Period size: 43 Copynumber: 2.8 Consensus size: 41
26655459 ATCTGAGATA
* * *
26655469 TCGTGTAAGACCGTCTCTAGGACACAGGCCTCGATTGAGTTT
1 TCGTGTAAGACCATGTCTAGGACACAGGCATCGATTGAG-TT
* * *
26655511 TACGTATAAGACCATGTTTGGGACATC-GGCATCGTATCTGA-TT
1 T-CGTGTAAGACCATGTCTAGGACA-CAGGCATCG-AT-TGAGTT
* *
26655554 TCGTGTAAGACCCTGTCTAGGACAAAGGCATC
1 TCGTGTAAGACCATGTCTAGGACACAGGCATC
26655586 AATATTGAAT
Statistics
Matches: 59, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
42 26 0.44
43 27 0.46
44 3 0.05
45 3 0.05
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTAGGACACAGGCATCGATTGAGTT
Found at i:26661919 original size:49 final size:47
Alignment explanation
Indices: 26661717--26661934 Score: 185
Period size: 46 Copynumber: 4.6 Consensus size: 47
26661707 AGTGGCATGT
* * **
26661717 GAGCCAGTGTAAGATATGTCAGGGACATGCATCGGC-CAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC-CGAAGATGA
* * ** *
26661763 GAGCCAGTGCAAGACATGTCTGGGACATGTATCGGCATTG-AGACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACCGAAGATGA
* *
26661809 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC-CTCG-AGATATA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC-CGAAGAT-GA
* * * **
26661856 CAAGCTAGTGTAAGACCTGTCTGGGACATGGCATCAACACCGATAGATGA
1 -GAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCACCGA-AGATGA
* *
26661906 GAGCCAGTGTAAGACCTTTCTGGGACATG
1 GAGCCAGTGTAAGACATGTCTGGGACATG
26661935 GCATTGGCCT
Statistics
Matches: 139, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
46 72 0.52
47 1 0.01
48 27 0.19
49 33 0.24
50 2 0.01
51 4 0.03
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACCGAAGATGA
Found at i:26661928 original size:97 final size:99
Alignment explanation
Indices: 26661807--26661989 Score: 239
Period size: 98 Copynumber: 1.9 Consensus size: 99
26661797 GCATTGAGAC
* *
26661807 GAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATAT-ACAAG-CTAGTGTAA
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCAAGATATGA-AAGTC-AGTGTAA
* *
26661869 GACCTGTCTGGGAC-ATGGCATCAACACCGATAGAT
64 GACCTGTCTAGGACTACGGCATCAACACCGATAGAT
* * * * *
26661904 GAGAGCCAGTGTAAGACCTTTCTGGGACATGGCATTGGCCTTAATATATGAAAGTCAGTGTAAGA
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCAAGATATGAAAGTCAGTGTAAGA
26661969 CCTGTCTAGGACTACGGCATC
66 CCTGTCTAGGACTACGGCATC
26661990 GAATTTAATG
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
97 27 0.37
98 37 0.51
99 9 0.12
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (99 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCAAGATATGAAAGTCAGTGTAAGA
CCTGTCTAGGACTACGGCATCAACACCGATAGAT
Found at i:26661963 original size:49 final size:48
Alignment explanation
Indices: 26661721--26661990 Score: 180
Period size: 49 Copynumber: 5.6 Consensus size: 48
26661711 GCATGTGAGC
** * * *
26661721 CAGTGTAAGATATGTCAGGGACAT-GCATCGGCCAC-AT-TATGAGAG
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAG
* * * * * * * *
26661766 CCAGTGCAAGACATGTCTGGGACAT-GTATCGGCATTG--AGACGAGAG
1 -CAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAG
* *
26661812 CTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATAT-ACAAG
1 C-AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGA-AAG
** * *
26661860 CTAGTGTAAGACCTGTCTGGGACATGGCATCAACAC-CGATAGATGAGAG
1 C-AGTGTAAGACCTGTCTGGGACATGGCATCGGC-CTCGATATATGAAAG
* * **
26661909 CCAGTGTAAGACCTTTCTGGGACATGGCATTGGCCTTAATATATGAAAG
1 -CAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAG
* *
26661958 TCAGTGTAAGACCTGTCTAGGACTACGGCATCG
1 -CAGTGTAAGACCTGTCTGGGAC-ATGGCATCG
26661991 AATTTAATGT
Statistics
Matches: 177, Mismatches: 35, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
45 1 0.01
46 65 0.37
47 1 0.01
48 29 0.16
49 71 0.40
50 10 0.06
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAG
Found at i:26665552 original size:18 final size:19
Alignment explanation
Indices: 26665508--26665545 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
26665498 CAAAAATAAA
26665508 TAAATATTTGTATTATATT
1 TAAATATTTGTATTATATT
*
26665527 TAAATATTT-TATTTTATT
1 TAAATATTTGTATTATATT
26665545 T
1 T
26665546 TCATATTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (19 bp):
TAAATATTTGTATTATATT
Found at i:26665674 original size:50 final size:50
Alignment explanation
Indices: 26665620--26665729 Score: 184
Period size: 50 Copynumber: 2.2 Consensus size: 50
26665610 ACTTCAAATT
*
26665620 TCAATAATTGAGCTTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGC
1 TCAATTATTGAGCTTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGC
* * *
26665670 TCAATTATTGTGGTTTTCTTGTTGGCACCTCAAATTTCAATAAGAAAAGC
1 TCAATTATTGAGCTTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGC
26665720 TCAATTATTG
1 TCAATTATTG
26665730 TGGTGACCCA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 56 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (50 bp):
TCAATTATTGAGCTTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGC
Found at i:26665730 original size:50 final size:50
Alignment explanation
Indices: 26665633--26665733 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
26665623 ATAATTGAGC
26665633 TTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGCTCAATTATTGTGG
1 TTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGCTCAATTATTGTGG
*
26665683 TTTTCTTGTTGGCACCTCAAATTTCAATAAGAAAAGCTCAATTATTGTGG
1 TTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGCTCAATTATTGTGG
26665733 T
1 T
26665734 GACCCAACTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.39
Consensus pattern (50 bp):
TTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGCTCAATTATTGTGG
Found at i:26678295 original size:48 final size:48
Alignment explanation
Indices: 26678242--26678342 Score: 175
Period size: 48 Copynumber: 2.1 Consensus size: 48
26678232 TTTATATGAA
26678242 TTGAAATAATTTGAACATATGTGGTAAATTTGACTGAGTGAATAGTAG
1 TTGAAATAATTTGAACATATGTGGTAAATTTGACTGAGTGAATAGTAG
* * *
26678290 TTGAAATAATTTTAATATATGTGGTAAATTTGACTGGGTGAATAGTAG
1 TTGAAATAATTTGAACATATGTGGTAAATTTGACTGAGTGAATAGTAG
26678338 TTGAA
1 TTGAA
26678343 GTAGGGTTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.37, C:0.03, G:0.23, T:0.38
Consensus pattern (48 bp):
TTGAAATAATTTGAACATATGTGGTAAATTTGACTGAGTGAATAGTAG
Found at i:26678598 original size:24 final size:25
Alignment explanation
Indices: 26678570--26678622 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 25
26678560 AATATGAGAA
26678570 AGTATGTGATATTTTCATGAG-GGG
1 AGTATGTGATATTTTCATGAGAGGG
26678594 AGTATGTGATATTTTCATGAGAGGG
1 AGTATGTGATATTTTCATGAGAGGG
26678619 AGTA
1 AGTA
26678623 AATACGCGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 21 0.75
25 7 0.25
ACGTcount: A:0.28, C:0.04, G:0.32, T:0.36
Consensus pattern (25 bp):
AGTATGTGATATTTTCATGAGAGGG
Found at i:26683520 original size:29 final size:28
Alignment explanation
Indices: 26683450--26683521 Score: 83
Period size: 28 Copynumber: 2.5 Consensus size: 28
26683440 AGATCTTTTT
*
26683450 TGGTCA-TCTAACCATGAAAAGTTATAAA
1 TGGTCACTCT-ACTATGAAAAGTTATAAA
* * *
26683478 TAGTCACCCAACTATGAAAAGTTATAAAA
1 TGGTCACTCTACTATGAAAAGTTAT-AAA
26683507 TGGTCACTCTACTAT
1 TGGTCACTCTACTAT
26683522 TCATTTTTGT
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
28 19 0.54
29 16 0.46
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.29
Consensus pattern (28 bp):
TGGTCACTCTACTATGAAAAGTTATAAA
Found at i:26685114 original size:7 final size:8
Alignment explanation
Indices: 26685094--26685127 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
26685084 CTCACATTAA
26685094 TAAAAAAT
1 TAAAAAAT
26685102 TAAAAAAT
1 TAAAAAAT
26685110 TAAAAAAT
1 TAAAAAAT
26685118 T-AAAAAT
1 TAAAAAAT
26685125 TAA
1 TAA
26685128 GATAAAATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 7 0.28
8 18 0.72
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
TAAAAAAT
Found at i:26685115 original size:16 final size:15
Alignment explanation
Indices: 26685094--26685127 Score: 59
Period size: 15 Copynumber: 2.2 Consensus size: 15
26685084 CTCACATTAA
26685094 TAAAAAATTAAAAAAT
1 TAAAAAATT-AAAAAT
26685110 TAAAAAATTAAAAAT
1 TAAAAAATTAAAAAT
26685125 TAA
1 TAA
26685128 GATAAAATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAAATTAAAAAT
Found at i:26685264 original size:20 final size:19
Alignment explanation
Indices: 26685236--26685275 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
26685226 AACGATAATA
26685236 AATTATAAAAATTATAAAT
1 AATTATAAAAATTATAAAT
*
26685255 AATTATTAAAAATTCTAAAT
1 AATTA-TAAAAATTATAAAT
26685275 A
1 A
26685276 TATATAATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
AATTATAAAAATTATAAAT
Found at i:26688448 original size:5 final size:5
Alignment explanation
Indices: 26688405--26688442 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
26688395 TTTAAGTAAT
26688405 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATA
26688443 ATATAACTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:26688470 original size:16 final size:19
Alignment explanation
Indices: 26688422--26688463 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
26688412 ATAATATAAT
* *
26688422 ATAATATAA-TATAATATA
1 ATAATATAACTAAAACATA
26688440 ATAATATAACTAAAACATA
1 ATAATATAACTAAAACATA
26688459 A-AATA
1 ATAATA
26688464 AACAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (19 bp):
ATAATATAACTAAAACATA
Found at i:26696891 original size:30 final size:29
Alignment explanation
Indices: 26696843--26696903 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
26696833 CAAGTAGCCG
26696843 AAGCTAGTTAAATAGCACACTTAGTGCCA
1 AAGCTAGTTAAATAGCACACTTAGTGCCA
*
26696872 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-TTAAATAGCACACTTAGTGCCA
26696902 AA
1 AA
26696904 ACTTCATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (29 bp):
AAGCTAGTTAAATAGCACACTTAGTGCCA
Found at i:26702445 original size:27 final size:27
Alignment explanation
Indices: 26702415--26702592 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26702405 ATATTGAGTC
* * * *
26702415 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
26702442 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26702469 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26702497 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26702524 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26702551 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26702578 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26702593 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26702554 original size:82 final size:81
Alignment explanation
Indices: 26702436--26702591 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26702426 TGCTATATAA
* *
26702436 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26702501 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26702518 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26702582 CACTTAGTGC
65 CACTTAGTGC
26702592 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26703093 original size:12 final size:12
Alignment explanation
Indices: 26703076--26703102 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26703066 ATGGCATACT
26703076 TATGTATATATA
1 TATGTATATATA
26703088 TATGTATATATA
1 TATGTATATATA
26703100 TAT
1 TAT
26703103 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:26707106 original size:18 final size:18
Alignment explanation
Indices: 26707043--26707106 Score: 51
Period size: 18 Copynumber: 3.5 Consensus size: 18
26707033 TATTATTTAA
* *
26707043 ATAAT-ATATAATATAAT
1 ATAATAATATAATAAAAC
* *
26707060 ATAATATAATATAATATAAT
1 AT-A-ATAATATAATAAAAC
26707080 ATAATAATATAACTAAAAC
1 ATAATAATATAA-TAAAAC
26707099 ATAA-AATA
1 ATAATAATA
26707107 AAGAAAGAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
17 2 0.05
18 14 0.34
19 11 0.27
20 14 0.34
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAATAATATAATAAAAC
Found at i:26707108 original size:5 final size:5
Alignment explanation
Indices: 26707048--26707085 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
26707038 TTTAAATAAT
26707048 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATA
26707086 ATATAACTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:26707172 original size:13 final size:14
Alignment explanation
Indices: 26707149--26707199 Score: 63
Period size: 14 Copynumber: 3.8 Consensus size: 14
26707139 ACAGAAGGTT
*
26707149 GAAACGAAAAAGGGA
1 GAAA-GAAAAAGGAA
26707164 GAAAGAAAAAGGAA
1 GAAAGAAAAAGGAA
26707178 GAAAG-AAAA--AA
1 GAAAGAAAAAGGAA
26707189 GAAAGAAAAAG
1 GAAAGAAAAAG
26707200 AAAGGGGAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 7 0.21
12 4 0.12
13 4 0.12
14 14 0.42
15 4 0.12
ACGTcount: A:0.71, C:0.02, G:0.27, T:0.00
Consensus pattern (14 bp):
GAAAGAAAAAGGAA
Found at i:26707915 original size:16 final size:17
Alignment explanation
Indices: 26707877--26707915 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
26707867 TAAGTAAATA
26707877 ATATT-ATATTATAATT
1 ATATTAATATTATAATT
26707893 ATATTAATATTATAA-T
1 ATATTAATATTATAATT
26707909 ATATTAA
1 ATATTAA
26707916 ATGAATAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATATTAATATTATAATT
Found at i:26717981 original size:77 final size:77
Alignment explanation
Indices: 26717854--26718005 Score: 205
Period size: 77 Copynumber: 2.0 Consensus size: 77
26717844 AGTGCAATGC
* * * * * *
26717854 GGTAATCCGCTATATCGATAGGTTGCAATAAAATTGCCTGTTTAGTCAAAGGTACGTAGCGTAGC
1 GGTAATCCGCTATACCGATAGGTTGCAATAAAACTACCAGTTCAGTCAAAGGTACGTAGCGTAAC
*
26717919 TAATGTACATGT
66 TAACGTACATGT
* * * *
26717931 GGTAATCCGTTATACCGATATGTTGTAGTAAAACTACCAGTTCAGTCAAAGGTACGTAGCGTAAC
1 GGTAATCCGCTATACCGATAGGTTGCAATAAAACTACCAGTTCAGTCAAAGGTACGTAGCGTAAC
26717996 TAACGTACAT
66 TAACGTACAT
26718006 ACGGTACAGT
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
77 64 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.30
Consensus pattern (77 bp):
GGTAATCCGCTATACCGATAGGTTGCAATAAAACTACCAGTTCAGTCAAAGGTACGTAGCGTAAC
TAACGTACATGT
Found at i:26718166 original size:92 final size:92
Alignment explanation
Indices: 26717931--26718313 Score: 525
Period size: 92 Copynumber: 4.2 Consensus size: 92
26717921 ATGTACATGT
* * * * *
26717931 GGTAATCCGTTATACCGATATGTTGTAGTAAAACTACCAGTTCAGTCAAAGGTACGTAGCGTAAC
1 GGTAATCCGCTATACCGATAGGTTGCAGTAAAACTGCCAGTTCAGTCAAAGGTACGTAGCGTAGC
*
26717996 TAACGTACATACGGTACAGTGCAGTGC
66 TAACGTACATACGGTACAGTGCAATGC
* * * * * * * *
26718023 -TTAATTCGTTATACCGATAGCTTACAGTAAAATTGCTAGTTCAGTCAAAGGTATGTAGCGTAGC
1 GGTAATCCGCTATACCGATAGGTTGCAGTAAAACTGCCAGTTCAGTCAAAGGTACGTAGCGTAGC
*
26718087 TAACGTACATGCGGTACAGTGCAATGC
66 TAACGTACATACGGTACAGTGCAATGC
* * *
26718114 GGTAATCCGCTATATCGATAGGTTGCAGTAAAATTGCCAGTTCAGTCAAAGGTACGTAGTGTAGC
1 GGTAATCCGCTATACCGATAGGTTGCAGTAAAACTGCCAGTTCAGTCAAAGGTACGTAGCGTAGC
* **
26718179 TAACGAACATACGACACAGTGCAATGC
66 TAACGTACATACGGTACAGTGCAATGC
*
26718206 GGTAATCCGCTATACCGATAGGTTGCAGTAAAACTGCCAGTTCAGTCAAAGGTATGTAGCGTAGC
1 GGTAATCCGCTATACCGATAGGTTGCAGTAAAACTGCCAGTTCAGTCAAAGGTACGTAGCGTAGC
* *
26718271 TAACGTACATATGGTACAGTCCAATGC
66 TAACGTACATACGGTACAGTGCAATGC
* *
26718298 AGTAATTCGCTATACC
1 GGTAATCCGCTATACC
26718314 AATATCGATA
Statistics
Matches: 253, Mismatches: 37, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
91 78 0.31
92 175 0.69
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (92 bp):
GGTAATCCGCTATACCGATAGGTTGCAGTAAAACTGCCAGTTCAGTCAAAGGTACGTAGCGTAGC
TAACGTACATACGGTACAGTGCAATGC
Found at i:26718844 original size:21 final size:20
Alignment explanation
Indices: 26718777--26718854 Score: 66
Period size: 21 Copynumber: 3.7 Consensus size: 20
26718767 GTCCAAACGC
*
26718777 CCGTGTGAAGGGTAGCACACGG
1 CCGTGTGAAGAG--GCACACGG
* *
26718799 CCGTGTGACAGAGGCACATGC
1 CCGTGTGA-AGAGGCACACGG
*
26718820 CCGTGTGAAGTAGGGACACGG
1 CCGTGTGAAG-AGGCACACGG
* *
26718841 CCGTATGAACAGGC
1 CCGTGTGAAGAGGC
26718855 CGTGTAACTC
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
20 5 0.11
21 29 0.64
22 8 0.18
23 3 0.07
ACGTcount: A:0.24, C:0.24, G:0.37, T:0.14
Consensus pattern (20 bp):
CCGTGTGAAGAGGCACACGG
Found at i:26719663 original size:26 final size:26
Alignment explanation
Indices: 26719620--26719669 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
26719610 TAAAATGAAA
* * * *
26719620 TAAAAATAAGTAGTAGAATAAAAACT
1 TAAAAAGAAGAAGAAGAAGAAAAACT
26719646 TAAAAAGAAGAAGAAGAAGAAAAA
1 TAAAAAGAAGAAGAAGAAGAAAAA
26719670 AATTCATCCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.68, C:0.02, G:0.16, T:0.14
Consensus pattern (26 bp):
TAAAAAGAAGAAGAAGAAGAAAAACT
Found at i:26724276 original size:21 final size:19
Alignment explanation
Indices: 26724239--26724281 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
26724229 TAGAAAATGA
26724239 TTTTTAAAAAATGAATTTAT
1 TTTTTAAAAAATGAATTT-T
* *
26724259 TTTTTAGAAAATTTAATTTT
1 TTTTTA-AAAAATGAATTTT
26724279 TTT
1 TTT
26724282 AGTGTTTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (19 bp):
TTTTTAAAAAATGAATTTT
Found at i:26735628 original size:15 final size:15
Alignment explanation
Indices: 26735610--26735639 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26735600 ACTAGAAGTG
26735610 CTCTCAACAGAAACC
1 CTCTCAACAGAAACC
*
26735625 CTCTTAACAGAAACC
1 CTCTCAACAGAAACC
26735640 TTTAAGTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.37, G:0.07, T:0.17
Consensus pattern (15 bp):
CTCTCAACAGAAACC
Found at i:26742329 original size:26 final size:26
Alignment explanation
Indices: 26742271--26742354 Score: 131
Period size: 26 Copynumber: 3.3 Consensus size: 26
26742261 CTGGAGGCCT
26742271 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
26742295 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
26742321 AGCCCTTTTCAATAAACTGGGGCAT-
1 AGCCCTTTTCAATAAACTGGGGCATA
26742346 AGCCCTTTT
1 AGCCCTTTT
26742355 GCACTTCCTC
Statistics
Matches: 57, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
23 5 0.09
24 7 0.12
25 19 0.33
26 26 0.46
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:26742429 original size:20 final size:20
Alignment explanation
Indices: 26742404--26742478 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
26742394 TTATGATTAC
*
26742404 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
*
26742424 ATCATGTCCATATCATACAT
1 ATCATGTGCATATCATACAT
26742444 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
26742464 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
26742479 TCTCACATAT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 8 0.16
20 41 0.80
21 2 0.04
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:26742435 original size:11 final size:11
Alignment explanation
Indices: 26742419--26742471 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 11
26742409 GTGCATTTCA
26742419 TACATATCATG
1 TACATATCATG
*
26742430 TCCATATCA--
1 TACATATCATG
26742439 TACATATCATG
1 TACATATCATG
* *
26742450 TGCATATCATA
1 TACATATCATG
26742461 T-CA-ATCATG
1 TACATATCATG
26742470 TA
1 TA
26742472 TATCATATCT
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
9 14 0.41
10 2 0.06
11 18 0.53
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.36
Consensus pattern (11 bp):
TACATATCATG
Found at i:26742476 original size:9 final size:10
Alignment explanation
Indices: 26742421--26742477 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
26742411 GCATTTCATA
26742421 CATATCATGT
1 CATATCATGT
*
26742431 CCATATCAT-A
1 -CATATCATGT
26742441 CATATCATGT
1 CATATCATGT
*
26742451 GCATATCATAT
1 -CATATCATGT
26742462 CA-ATCATGT
1 CATATCATGT
26742471 -ATATCAT
1 CATATCAT
26742478 ATCTCACATA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.37
Consensus pattern (10 bp):
CATATCATGT
Found at i:26756281 original size:13 final size:13
Alignment explanation
Indices: 26756263--26756315 Score: 97
Period size: 13 Copynumber: 4.1 Consensus size: 13
26756253 GAAGTAATTG
26756263 CACACGGGCGTGT
1 CACACGGGCGTGT
26756276 CACACGGGCGTGT
1 CACACGGGCGTGT
*
26756289 CACATGGGCGTGT
1 CACACGGGCGTGT
26756302 CACACGGGCGTGT
1 CACACGGGCGTGT
26756315 C
1 C
26756316 TTTGCCGAGC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.15, C:0.30, G:0.38, T:0.17
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:26770535 original size:54 final size:54
Alignment explanation
Indices: 26770453--26770604 Score: 304
Period size: 54 Copynumber: 2.8 Consensus size: 54
26770443 ATGCATTAAA
26770453 ACATAGATGTATTCATTGGAAGAATGATACATTGGACTAGACCTTCGGGCAGAG
1 ACATAGATGTATTCATTGGAAGAATGATACATTGGACTAGACCTTCGGGCAGAG
26770507 ACATAGATGTATTCATTGGAAGAATGATACATTGGACTAGACCTTCGGGCAGAG
1 ACATAGATGTATTCATTGGAAGAATGATACATTGGACTAGACCTTCGGGCAGAG
26770561 ACATAGATGTATTCATTGGAAGAATGATACATTGGACTAGACCT
1 ACATAGATGTATTCATTGGAAGAATGATACATTGGACTAGACCT
26770605 AAGATGAATT
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 98 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.27
Consensus pattern (54 bp):
ACATAGATGTATTCATTGGAAGAATGATACATTGGACTAGACCTTCGGGCAGAG
Found at i:26773631 original size:47 final size:47
Alignment explanation
Indices: 26773579--26773745 Score: 244
Period size: 47 Copynumber: 3.6 Consensus size: 47
26773569 GATAATTGTG
* *
26773579 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26773626 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
26773673 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
26773720 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
26773746 TCCCGAAGGG
Statistics
Matches: 108, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 108 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:26773918 original size:37 final size:37
Alignment explanation
Indices: 26773864--26773955 Score: 157
Period size: 37 Copynumber: 2.5 Consensus size: 37
26773854 CCGAGCTCTA
* *
26773864 AAGACCCGATGATTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGG
26773901 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGG
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGG
*
26773938 AAGACCTGATGACTACGT
1 AAGACCCGATGACTACGT
26773956 NNNNNNNNNN
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 52 1.00
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGG
Found at i:26775410 original size:68 final size:63
Alignment explanation
Indices: 26775317--26775507 Score: 212
Period size: 61 Copynumber: 3.0 Consensus size: 63
26775307 ATTTTAATAT
*
26775317 ATTTAATATTAAATTTAAATTAATATTTATCTTATTAGTATTTTATTAATTTAATATTAAAGTGA
1 ATTTAATATTAAA-TTAAATTAATATTTATCTTATTAGTATTATATT-ATTTAATATTAAAGT-A
*
26775382 TT
63 -G
*
26775384 ATCTTAATATTAAATTAAATTAAATATTTATCTTA-TAGGTA-TATATCATATTAA-ATT-AA-T
1 AT-TTAATATTAAATTAAATT-AATATTTATCTTATTA-GTATTATATTAT-TTAATATTAAAGT
26775444 AG
62 AG
* *
26775446 ATTTAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTATTTAATATTAAAG
1 ATTTAATATTAAATTAAAT-TAATATTTATCTT-ATTAGTATTATATTATTTAATATTAAAG
26775508 AAATTAAGTT
Statistics
Matches: 107, Mismatches: 6, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
61 28 0.26
62 11 0.10
63 12 0.11
64 3 0.03
65 2 0.02
66 5 0.05
67 19 0.18
68 27 0.25
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (63 bp):
ATTTAATATTAAATTAAATTAATATTTATCTTATTAGTATTATATTATTTAATATTAAAGTAG
Found at i:26782443 original size:48 final size:49
Alignment explanation
Indices: 26782375--26782504 Score: 147
Period size: 48 Copynumber: 2.7 Consensus size: 49
26782365 ACATCAAAGT
* *
26782375 CGATGCC-ATGTCCTAAACAGGTCTTATACTGACTATCATATATCGAGGC
1 CGATGCCGA-GTCCCAAACAGGTCTTACACTGACTATCATATATCGAGGC
* * * * *
26782424 CGAT-CCGTGTCCCAGACAGGTTTTACACTTACTTTCATATATCGAGGC
1 CGATGCCGAGTCCCAAACAGGTCTTACACTGACTATCATATATCGAGGC
* **
26782472 TGATGTTGAGTCCCAAACAGGTCTTACACTGAC
1 CGATGCCGAGTCCCAAACAGGTCTTACACTGAC
26782505 ACACAACAAG
Statistics
Matches: 65, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
48 39 0.60
49 26 0.40
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (49 bp):
CGATGCCGAGTCCCAAACAGGTCTTACACTGACTATCATATATCGAGGC
Found at i:26782582 original size:48 final size:46
Alignment explanation
Indices: 26782522--26782639 Score: 139
Period size: 46 Copynumber: 2.5 Consensus size: 46
26782512 AAGCTGACGC
* * * *
26782522 CATGTCCTAGACAAGTCTTACACTGGCT-TGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CA-ATAT-GAGGCCGATG
*
26782570 CATGTCCCAGACATGTCTTACACTGGCTCTCAATATGTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCAATATGAGGCCGATG
* *
26782616 CATGTCTCAGATATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
26782640 AGCACACATA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
46 31 0.50
47 3 0.05
48 27 0.44
49 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCAATATGAGGCCGATG
Found at i:26785437 original size:18 final size:18
Alignment explanation
Indices: 26785414--26785449 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
26785404 TTCCCGGGTG
26785414 GTAGTCGATTATCAACTC
1 GTAGTCGATTATCAACTC
**
26785432 GTAGTCTTTTATCAACTC
1 GTAGTCGATTATCAACTC
26785450 CAACCGTCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (18 bp):
GTAGTCGATTATCAACTC
Found at i:26789582 original size:40 final size:40
Alignment explanation
Indices: 26789474--26789650 Score: 254
Period size: 40 Copynumber: 4.5 Consensus size: 40
26789464 TGGATGATAA
* *
26789474 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
26789514 CCGGGCTAAGTCCC-AAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26789553 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26789593 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
26789633 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
26789651 TACTTGGTTT
Statistics
Matches: 127, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
39 51 0.40
40 76 0.60
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Done.