Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55438857
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1812582 characters in sequence are not A, C, G, or T
File 98 of 167
Found at i:32531963 original size:38 final size:38
Alignment explanation
Indices: 32531912--32531986 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
32531902 TTATTTGTTT
32531912 GCATTGCTTAAAACTTACTAAGCTTATGAAAGCTTACA
1 GCATTGCTTAAAACTTACTAAGCTTATGAAAGCTTACA
32531950 GCATTGCTTAAAACTTACTAAGCTTATGAAAGCTTAC
1 GCATTGCTTAAAACTTACTAAGCTTATGAAAGCTTAC
32531987 TCCGTTGTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (38 bp):
GCATTGCTTAAAACTTACTAAGCTTATGAAAGCTTACA
Found at i:32531966 original size:19 final size:20
Alignment explanation
Indices: 32531912--32531972 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 20
32531902 TTATTTGTTT
32531912 GCATTGCTTAAAACTTACTAA
1 GCATTGCTTAAAACTTAC-AA
* * *
32531933 GC-TT-ATGAAAGCTTAC-A
1 GCATTGCTTAAAACTTACAA
32531950 GCATTGCTTAAAACTTACTAA
1 GCATTGCTTAAAACTTAC-AA
32531971 GC
1 GC
32531973 TTATGAAAGC
Statistics
Matches: 30, Mismatches: 6, Indels: 8
0.68 0.14 0.18
Matches are distributed among these distances:
17 3 0.10
18 2 0.07
19 18 0.60
20 2 0.07
21 5 0.17
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31
Consensus pattern (20 bp):
GCATTGCTTAAAACTTACAA
Found at i:32531985 original size:19 final size:19
Alignment explanation
Indices: 32531925--32531987 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
32531915 TTGCTTAAAA
32531925 CTTACTAAGCTTATGAAAG
1 CTTACTAAGCTTATGAAAG
* * *
32531944 CTTAC--AGCATTGCTTAAAA
1 CTTACTAAGC-TT-ATGAAAG
32531963 CTTACTAAGCTTATGAAAG
1 CTTACTAAGCTTATGAAAG
32531982 CTTACT
1 CTTACT
32531988 CCGTTGTTAC
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
17 3 0.09
18 2 0.06
19 24 0.71
20 2 0.06
21 3 0.09
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (19 bp):
CTTACTAAGCTTATGAAAG
Found at i:32533990 original size:18 final size:18
Alignment explanation
Indices: 32533967--32534002 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
32533957 ATAAACTGAG
32533967 TTCGTACATATTAAATAA
1 TTCGTACATATTAAATAA
32533985 TTCGTACATATTAAATAA
1 TTCGTACATATTAAATAA
32534003 GGATATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.11, G:0.06, T:0.39
Consensus pattern (18 bp):
TTCGTACATATTAAATAA
Found at i:32535962 original size:41 final size:41
Alignment explanation
Indices: 32535905--32536004 Score: 182
Period size: 41 Copynumber: 2.4 Consensus size: 41
32535895 TTCACGAGCT
*
32535905 TGCTCACACAAGCTGTCAATTAGGACGTAGCTACACAGTGG
1 TGCTCACACAAGCTGTCAATTAGGACGTAGCTACACAGTGC
32535946 TGCTCACACAAGCTGTCAATTAGGACGTAGCTACACAGTGC
1 TGCTCACACAAGCTGTCAATTAGGACGTAGCTACACAGTGC
*
32535987 TGCTCACACAAGATGTCA
1 TGCTCACACAAGCTGTCA
32536005 GGTATCCACA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 57 1.00
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (41 bp):
TGCTCACACAAGCTGTCAATTAGGACGTAGCTACACAGTGC
Found at i:32549699 original size:23 final size:23
Alignment explanation
Indices: 32549673--32549718 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
32549663 TTAGGAAACT
*
32549673 TCATACCCATGATTTTACCATGC
1 TCATACCCATGATATTACCATGC
* * *
32549696 TCATTCTCATGATATTCCCATGC
1 TCATACCCATGATATTACCATGC
32549719 CAATATCTCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.24, C:0.30, G:0.09, T:0.37
Consensus pattern (23 bp):
TCATACCCATGATATTACCATGC
Found at i:32554369 original size:68 final size:68
Alignment explanation
Indices: 32554260--32554394 Score: 180
Period size: 68 Copynumber: 2.0 Consensus size: 68
32554250 CTCGCGATCA
* ** * * * *
32554260 TATATGATGCCATGTTTACTGTCATTTCAGACTTCGTATGTTTCCATAACCTAGCTATGGTCTTA
1 TATATGATGACATGTTTACTGTCATGGCAGACTTCATATGTTGCCATAACCTAACCATGGTCTTA
32554325 CAC
66 CAC
* * *
32554328 TATATGATGACATGTTTACTGTCCTGGCGGACTTCATATGTTGCCATAGCCTAACCATGGTCTTA
1 TATATGATGACATGTTTACTGTCATGGCAGACTTCATATGTTGCCATAACCTAACCATGGTCTTA
32554393 CA
66 CA
32554395 GTCTTATAGG
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
68 57 1.00
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (68 bp):
TATATGATGACATGTTTACTGTCATGGCAGACTTCATATGTTGCCATAACCTAACCATGGTCTTA
CAC
Found at i:32555693 original size:16 final size:16
Alignment explanation
Indices: 32555672--32555709 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
32555662 GATTTATTTA
32555672 ATCAATTGAAAGGTGG
1 ATCAATTGAAAGGTGG
32555688 ATCAATTGAAAGGTGG
1 ATCAATTGAAAGGTGG
32555704 ATCAAT
1 ATCAAT
32555710 CTTCTACAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.39, C:0.08, G:0.26, T:0.26
Consensus pattern (16 bp):
ATCAATTGAAAGGTGG
Found at i:32559762 original size:19 final size:19
Alignment explanation
Indices: 32559740--32559822 Score: 69
Period size: 19 Copynumber: 4.4 Consensus size: 19
32559730 AGGATGCACC
* *
32559740 TCGTGTGCCAAGATGCGCT
1 TCGTATGCCAATATGCGCT
*
32559759 TCGTATGCCGATATGCGCT
1 TCGTATGCCAATATGCGCT
* * *
32559778 TTGTACGCCAATATGTGCT
1 TCGTATGCCAATATGCGCT
* * *
32559797 TCGTGTGCTAGTATGCG-T
1 TCGTATGCCAATATGCGCT
*
32559815 TAGTATGC
1 TCGTATGC
32559823 ACTTTGCGTG
Statistics
Matches: 49, Mismatches: 15, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
18 7 0.14
19 42 0.86
ACGTcount: A:0.17, C:0.22, G:0.28, T:0.34
Consensus pattern (19 bp):
TCGTATGCCAATATGCGCT
Found at i:32562417 original size:20 final size:21
Alignment explanation
Indices: 32562371--32562417 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
32562361 AATTTTAGTT
**
32562371 ATTATTTTTTTAACCTTTTAA
1 ATTATTTTCGTAACCTTTTAA
*
32562392 A-AATTTTCGTAA-CTTTTAA
1 ATTATTTTCGTAACCTTTTAA
32562411 ATTATTT
1 ATTATTT
32562418 AATAATTTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
19 8 0.38
20 12 0.57
21 1 0.05
ACGTcount: A:0.32, C:0.09, G:0.02, T:0.57
Consensus pattern (21 bp):
ATTATTTTCGTAACCTTTTAA
Found at i:32567855 original size:45 final size:45
Alignment explanation
Indices: 32567790--32567887 Score: 171
Period size: 45 Copynumber: 2.2 Consensus size: 45
32567780 TCCGACTTGC
* *
32567790 TTAATT-AAGGAAGAATAATAACCATTATATTAGTGATTAGTAGT
1 TTAATTAAAGGAAGAACAATAACCATTAAATTAGTGATTAGTAGT
32567834 TTAATTAAAGGAAGAACAATAACCATTAAATTAGTGATTAGTAGT
1 TTAATTAAAGGAAGAACAATAACCATTAAATTAGTGATTAGTAGT
32567879 TTAATTAAA
1 TTAATTAAA
32567888 AGTTAAGTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
44 6 0.12
45 45 0.88
ACGTcount: A:0.46, C:0.05, G:0.14, T:0.35
Consensus pattern (45 bp):
TTAATTAAAGGAAGAACAATAACCATTAAATTAGTGATTAGTAGT
Found at i:32568776 original size:16 final size:17
Alignment explanation
Indices: 32568755--32568786 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
32568745 TAATTTTAAA
32568755 AAATAA-TTTCTCAATT
1 AAATAATTTTCTCAATT
32568771 AAATAATTTTCTCAAT
1 AAATAATTTTCTCAAT
32568787 CTAATTCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (17 bp):
AAATAATTTTCTCAATT
Found at i:32569006 original size:29 final size:29
Alignment explanation
Indices: 32568964--32569022 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
32568954 ATTTCCATAC
32568964 TTAGTGAGAAAACCACATTCATTTTCGAA
1 TTAGTGAGAAAACCACATTCATTTTCGAA
32568993 TTAGTGAGAAAACCACATTCATTTTCGAA
1 TTAGTGAGAAAACCACATTCATTTTCGAA
32569022 T
1 T
32569023 GTAACACATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (29 bp):
TTAGTGAGAAAACCACATTCATTTTCGAA
Found at i:32570447 original size:50 final size:50
Alignment explanation
Indices: 32570372--32570503 Score: 158
Period size: 50 Copynumber: 2.6 Consensus size: 50
32570362 GGCTTGATAT
* * *
32570372 GTGTAAGACCATGTCTGGGATATGGCATCGACAC-CGATAAATGAGAACCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGAC-CTCGATAAATAAGAACAA
* * * * **
32570422 GTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGGTATATAAGAGTAA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATAAATAAGAACAA
*
32570472 GTGTAAGACCATGTCTGGGACATGACATCGAC
1 GTGTAAGACCATGTCTGGGACATGGCATCGAC
32570504 TTTGATATGT
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
49 1 0.01
50 68 0.99
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (50 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATAAATAAGAACAA
Found at i:32570551 original size:98 final size:99
Alignment explanation
Indices: 32570372--32570551 Score: 229
Period size: 98 Copynumber: 1.8 Consensus size: 99
32570362 GGCTTGATAT
* * * **
32570372 GTGTAAGACCATGTCTGGGATATGGCATCGACACCGATAAATGAGAACCAGTGTAAGACCATGTT
1 GTGTAAGACCATGTCTGGGACATGACATCGACACCGAT-AATGAGAACCAGTGAAAGACCATGCC
32570437 TGGGACATGGCATCGGCCTCGGTATATAAGAGTAA
65 TGGGACATGGCATCGGCCTCGGTATATAAGAGTAA
*** * *
32570472 GTGTAAGACCATGTCTGGGACATGACATCGACTTTGAT-ATGTA-AGCCAGTGAAAGACCGTGCC
1 GTGTAAGACCATGTCTGGGACATGACATCGACACCGATAATG-AGAACCAGTGAAAGACCATGCC
*
32570535 TGGGACATGGCGTCGGC
65 TGGGACATGGCATCGGC
32570552 ATCTTACCCT
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
98 34 0.50
99 1 0.01
100 33 0.49
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (99 bp):
GTGTAAGACCATGTCTGGGACATGACATCGACACCGATAATGAGAACCAGTGAAAGACCATGCCT
GGGACATGGCATCGGCCTCGGTATATAAGAGTAA
Found at i:32576800 original size:48 final size:49
Alignment explanation
Indices: 32576545--32577238 Score: 438
Period size: 48 Copynumber: 14.8 Consensus size: 49
32576535 CACATTATAA
* * *
32576545 GAGCCAGTGTAAGACCATATATGGGACATGGCATCGGCATT-AAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAGATGT
* * *
32576593 AAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTT-AAGATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAGATGT
* * ***
32576641 AAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG-AGACAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAGATGT
* * * *
32576689 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGC-TTG-ATATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAGATGT
* * * *
32576736 --GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTTGATG-TGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAGATGT
* * * * * *
32576782 GAGCCAGTGTAAGACCATGTCCGGG--GTGG--TTGAACCTT-AAGA-AT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG-GCATTGAAGATGT
* * * * * * *
32576826 -AG--A-T-T-GGA-TAT-TCAT--GCCATGACATTTGG--GTG-ATATGT
1 GAGCCAGTGTAAGACCATGTC-TGGGACATGGCA-TCGGCATTGAAGATGT
* * * * * * ** *
32576864 GTGCTAGAGTAAGA-CATGTCTGGGACAT-ACATCAGCCA--CATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GGCATTGAAGATGT
*
32576910 GAGCCAGTGTAAGACCATGTCTGGGACATGGTATCGGCATT-AAGATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAGATGT
* * ***
32576958 AAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG-AGACAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAGATGT
* * * *
32577006 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGC-TTG-ATATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAGATGT
* ** *
32577053 --GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-AGATGT
* * * * * *
32577101 GAGCCAGTGTAAGACCATGCCTAGGACATGGCATCGGCCTCGATATATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-AGATGT
** * * *
32577151 GAGTAAGTGTAAGACCATGTCTGGGACATGGCATCGACTTTGATG-TGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAGATGT
* ** *
32577199 GAGCCAGTGTAAGACCATGTCCGGGGTATGGCGTCGGCAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
32577239 CTTACCCTAT
Statistics
Matches: 504, Mismatches: 104, Indels: 76
0.74 0.15 0.11
Matches are distributed among these distances:
35 1 0.00
36 2 0.00
37 7 0.01
38 3 0.01
39 2 0.00
40 4 0.01
41 2 0.00
43 3 0.01
44 11 0.02
45 73 0.14
46 29 0.06
47 27 0.05
48 262 0.52
50 78 0.15
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAGATGT
Found at i:32577210 original size:193 final size:189
Alignment explanation
Indices: 32576856--32577219 Score: 452
Period size: 193 Copynumber: 1.9 Consensus size: 189
32576846 GACATTTGGG
*
32576856 TGATATGTGTGCTAGAGTAAGACATGTCTGGGACATACATCAGCCACATTATGAGAGCCAGTGTA
1 TGATATGTGTGCTAGAGTAAGACATGTCTGGGACATACATCAGCCACATGATGAGAGCCAGTGTA
* * * *
32576921 AGACCATGTCTGGGACATGGTATCGGCATTAAGATGTAAGCTAGTGTAAGACCATGTCTGGGACA
66 AGACCATGCCTAGGACATGGCATCGGCATGAAGATGTAAGCTAGTGTAAGACCATGTCTGGGACA
* *
32576986 TGGCATCGGCATTGAGACAAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCT
131 TGGCATCGACATTGAGACAAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCT
* * *
32577045 TGATATGTGT-C-AGTGTAAGACCATGTCTGGGACATGGCATC-GGCACCGATAGATGAGAGCCA
1 TGATATGTGTGCTAGAGTAAGA-CATGTCTGGGACAT-ACATCAGCCA-C-AT-GATGAGAGCCA
* *
32577107 GTGTAAGACCATGCCTAGGACATGGCATCGGCCTCGATATATG-AGAG-TAAGTGTAAGACCATG
61 GTGTAAGACCATGCCTAGGACATGGCATCGGCAT-GA-AGATGTA-AGCT-AGTGTAAGACCATG
* ***
32577170 TCTGGGACATGGCATCGACTTTGATG-TGTGAGCCAGTGTAAGACCATGTC
122 TCTGGGACATGGCATCGACATTGA-GACAAGAGCCAGTGTAAGACCATGTC
32577220 CGGGGTATGG
Statistics
Matches: 149, Mismatches: 16, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
187 8 0.05
188 18 0.12
189 15 0.10
190 2 0.01
191 40 0.27
192 3 0.02
193 62 0.42
194 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (189 bp):
TGATATGTGTGCTAGAGTAAGACATGTCTGGGACATACATCAGCCACATGATGAGAGCCAGTGTA
AGACCATGCCTAGGACATGGCATCGGCATGAAGATGTAAGCTAGTGTAAGACCATGTCTGGGACA
TGGCATCGACATTGAGACAAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCT
Found at i:32579876 original size:26 final size:26
Alignment explanation
Indices: 32579840--32579893 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
32579830 TAACAAGTGA
*
32579840 GCTAATATTTGCTTCTATTTTGTTTT
1 GCTAATATTTGCTTCTATATTGTTTT
*
32579866 GCTAATATTTGTTTCTATATTGTTTT
1 GCTAATATTTGCTTCTATATTGTTTT
32579892 GC
1 GC
32579894 ATGCAAAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.17, C:0.11, G:0.13, T:0.59
Consensus pattern (26 bp):
GCTAATATTTGCTTCTATATTGTTTT
Found at i:32580561 original size:23 final size:23
Alignment explanation
Indices: 32580531--32580577 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
32580521 TTATCTAACG
32580531 TAGCTCACATTGAGTTCAAAACA
1 TAGCTCACATTGAGTTCAAAACA
32580554 TAGCTCACATTGAGTTCAAAACA
1 TAGCTCACATTGAGTTCAAAACA
32580577 T
1 T
32580578 TGAAGGGACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (23 bp):
TAGCTCACATTGAGTTCAAAACA
Found at i:32585809 original size:35 final size:35
Alignment explanation
Indices: 32585770--32585839 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
32585760 TGGGTGACAT
** *
32585770 TGTGTAAACGGTATATAGGTCCTCCAGGGCAACAC
1 TGTGTAAACAATATATAGGTCATCCAGGGCAACAC
* **
32585805 TGTGTAAGCAATATATAGGTCATTTAGGGCAACAC
1 TGTGTAAACAATATATAGGTCATCCAGGGCAACAC
32585840 CTCGAAAGGG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (35 bp):
TGTGTAAACAATATATAGGTCATCCAGGGCAACAC
Found at i:32587248 original size:47 final size:47
Alignment explanation
Indices: 32587188--32587317 Score: 163
Period size: 47 Copynumber: 2.8 Consensus size: 47
32587178 GTGCGAATAA
* * * *** *
32587188 TACCTTAATTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAAGAGAAGT
* *
32587235 TACCTTGATTTGGCTACGGGTCATGGT-TCAGGTACTCCAAGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTAT-AGGTACTCCAAGAGAAGT
32587282 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
32587318 TATCGATTGT
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
46 1 0.01
47 69 0.97
48 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAAGAGAAGT
Found at i:32590285 original size:48 final size:48
Alignment explanation
Indices: 32590211--32590485 Score: 245
Period size: 50 Copynumber: 5.7 Consensus size: 48
32590201 TAAGATGCCA
* * *
32590211 ATGCCAAGTCCCGGACATGGTCTTACACTAGCTCACACATCAAAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACACATCAAAGCCG
* * * * * * *
32590259 ATGCCATGTCCCAAACATGGTATTACACTAACTCTCATATATCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-A-GCTCACACATCAAAGCCG
* * * * * * *
32590309 ATGCCATGTCCCAGACATGTTCTTACACTGGCTCTCATCTACCGATGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA-C-ATCAAAGCCG
* *
32590359 ATGCCATGTCCCAGACATGGTCTTACACT-G---ACACATCTCAAGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACACATC-AAAGCCG
* * * *
32590404 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTC-TCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCAC-ACATCAAAGCCG
*
32590452 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTC
32590486 TCGTAATGTG
Statistics
Matches: 184, Mismatches: 33, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
44 2 0.01
45 33 0.18
46 3 0.02
48 67 0.36
49 5 0.03
50 74 0.40
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACACATCAAAGCCG
Found at i:32590489 original size:48 final size:48
Alignment explanation
Indices: 32590205--32590487 Score: 295
Period size: 48 Copynumber: 5.9 Consensus size: 48
32590195 ATAGGGTAAG
* * *
32590205 ATGCCAATGCCAAGTCCCGGACATGGTCTTACACTAGCTCACA-CATCA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATC-TCA
* * * * * * * *
32590253 AAGTCGATGCCATGTCCCAAACATGGTATTACACTAACTCTCATATATCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC--ATCTCA
* * * * *
32590303 AGGCCGATGCCATGTCCCAGACATGTTCTTACACTGGCTCTCATCTACCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCT--CA
** * *
32590353 ATGCTGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCA
*
32590399 A-GCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCA
*
32590446 ATGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC
32590488 GTAATGTGGC
Statistics
Matches: 196, Mismatches: 31, Indels: 16
0.81 0.13 0.07
Matches are distributed among these distances:
45 31 0.16
46 3 0.02
47 8 0.04
48 81 0.41
49 1 0.01
50 72 0.37
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.25
Consensus pattern (48 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCA
Found at i:32590500 original size:48 final size:46
Alignment explanation
Indices: 32590200--32590514 Score: 212
Period size: 48 Copynumber: 6.6 Consensus size: 46
32590190 CAAACATAGG
* * * *
32590200 GTAAGATGCCAATGCCAAGTCCCGGACATGGTCTTACACTAGCTCACAC
1 GTAAG-TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCT--CTC
* * * * **
32590249 ATCAAAGT--CGATGCCATGTCCCAAACATGGTATTACACTAACTCTC
1 GT--AAGTGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC
* * * *
32590295 ATATATCGAGGCCGATGCCATGTCCCAGACATGTTCTTACACTGGCTCTC
1 GTA-A--G-TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC
* * ** * *
32590345 ATCTACCGATGCTGATGCCATGTCCCAGACATGGTCTTACACTGACACATC
1 --GTA-AG-TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TC
*
32590396 -TCAA--GCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC
1 GT-AAGTGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC
32590440 GTCTCAA-TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC
1 G--T-AAGTGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC
32590488 GTAATGTGGCCAATG-CATGTCCCAGAC
1 GTAA-GT-GCCAATGCCATGTCCCAGAC
32590515 TTATCTTACA
Statistics
Matches: 218, Mismatches: 29, Indels: 40
0.76 0.10 0.14
Matches are distributed among these distances:
44 3 0.01
45 36 0.17
46 5 0.02
47 18 0.08
48 77 0.35
49 2 0.01
50 70 0.32
51 5 0.02
52 2 0.01
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (46 bp):
GTAAGTGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC
Found at i:32591084 original size:30 final size:31
Alignment explanation
Indices: 32591044--32591104 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
32591034 CATAATTTAT
*
32591044 ACTTTGAC-AAAATGACCATTTTGCCCCTAG
1 ACTTTGACAAAAATGACCATTTTACCCCTAG
* * *
32591074 ACTTTTACAAAAATTACGATTTTACCCCTAG
1 ACTTTGACAAAAATGACCATTTTACCCCTAG
32591105 GCTCGTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 7 0.27
31 19 0.73
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.33
Consensus pattern (31 bp):
ACTTTGACAAAAATGACCATTTTACCCCTAG
Found at i:32597228 original size:50 final size:50
Alignment explanation
Indices: 32597165--32597399 Score: 207
Period size: 50 Copynumber: 4.8 Consensus size: 50
32597155 CATCAAAGTC
* * *
32597165 GATGCCATGTCCCAAACATGGTCTTACATTGACTCTCATATATCGAGGCA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATCTCGAGGCA
* * * * *
32597215 GATGCCATATCCCAGACATGGCCTTACACTGGCTCTCATCTGTCG-GTGCCA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATCTCGAG-G-CA
* * * * *
32597266 -ATGCCATGTCCTAGACATGGTCTTACACTGA----GACATCTCAAGTC-
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATCTCGAGGCA
* * * *
32597310 GATGCCATGTCCCAGACATGGTCTTATACT-AGCTTTCATATCTCGAAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATCTCGAGGCA
* * *
32597360 GATGCCATGTCCCAAACATGGTCTTACACTGGCTGTCATA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATA
32597400 AAGTGGCCGA
Statistics
Matches: 146, Mismatches: 28, Indels: 22
0.74 0.14 0.11
Matches are distributed among these distances:
44 1 0.01
45 28 0.19
46 4 0.03
47 1 0.01
49 9 0.06
50 101 0.69
51 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (50 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATCTCGAGGCA
Found at i:32597330 original size:45 final size:47
Alignment explanation
Indices: 32597121--32597390 Score: 174
Period size: 50 Copynumber: 5.6 Consensus size: 47
32597111 GATGCCGACA
* * * *
32597121 CCATGTCCCGGGCATGGTCTTACACTG-GCTTACA-CATCAAAGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTGAG--TACATC-TCGAAGCCGATG
* * * * * * *
32597169 CCATGTCCCAAACATGGTCTTACATTGACTCTCATATATCGAGGCAGATG
1 CCATGTCCCAGACATGGTCTTACACTGA--GT-ACATCTCGAAGCCGATG
* * * ** *
32597219 CCATATCCCAGACATGGCCTTACACTG-GCTCTCATCTGTCGGTGCCAATG
1 CCATGTCCCAGACATGGTCTTACACTGAG-T-ACATC--TCGAAGCCGATG
* *
32597269 CCATGTCCTAGACATGGTCTTACACTGAG-ACATCTC-AAGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTGAGTACATCTCGAAGCCGATG
* *
32597314 CCATGTCCCAGACATGGTCTTATACT-AGCTTTCATATCTCGAAGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGAG---T-ACATCTCGAAGCCGATG
*
32597364 CCATGTCCCAAACATGGTCTTACACTG
1 CCATGTCCCAGACATGGTCTTACACTG
32597391 GCTGTCATAA
Statistics
Matches: 169, Mismatches: 37, Indels: 29
0.72 0.16 0.12
Matches are distributed among these distances:
44 2 0.01
45 29 0.17
46 2 0.01
48 31 0.18
49 7 0.04
50 97 0.57
51 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
CCATGTCCCAGACATGGTCTTACACTGAGTACATCTCGAAGCCGATG
Found at i:32597365 original size:95 final size:95
Alignment explanation
Indices: 32597215--32597390 Score: 244
Period size: 95 Copynumber: 1.9 Consensus size: 95
32597205 TATCGAGGCA
* * * ** * *
32597215 GATGCCATATCCCAGACATGGCCTTACACTGGCTCTCATCTGTCGGTGCCAATGCCATGTCCTAG
1 GATGCCATATCCCAGACATGGCCTTACACTAGCTCTCATATCTCGAAGCCAATGCCATGTCCCAA
32597280 ACATGGTCTTACACTGAGACATCTCAAGTC
66 ACATGGTCTTACACTGAGACATCTCAAGTC
* * * * *
32597310 GATGCCATGTCCCAGACATGGTCTTATACTAGCTTTCATATCTCGAAGCCGATGCCATGTCCCAA
1 GATGCCATATCCCAGACATGGCCTTACACTAGCTCTCATATCTCGAAGCCAATGCCATGTCCCAA
32597375 ACATGGTCTTACACTG
66 ACATGGTCTTACACTG
32597391 GCTGTCATAA
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
95 69 1.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (95 bp):
GATGCCATATCCCAGACATGGCCTTACACTAGCTCTCATATCTCGAAGCCAATGCCATGTCCCAA
ACATGGTCTTACACTGAGACATCTCAAGTC
Found at i:32597989 original size:30 final size:31
Alignment explanation
Indices: 32597948--32598008 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
32597938 CATAATCTAT
*
32597948 ACTTTTTC-AAAATGACCATTTTACCCCTAG
1 ACTTTTACAAAAATGACCATTTTACCCCTAG
* *
32597978 ACTTTTACAAAAATTACGATTTTACCCCTAG
1 ACTTTTACAAAAATGACCATTTTACCCCTAG
32598009 GCTCGTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 7 0.26
31 20 0.74
ACGTcount: A:0.33, C:0.25, G:0.07, T:0.36
Consensus pattern (31 bp):
ACTTTTACAAAAATGACCATTTTACCCCTAG
Found at i:32599940 original size:24 final size:24
Alignment explanation
Indices: 32599817--32599938 Score: 208
Period size: 24 Copynumber: 5.0 Consensus size: 24
32599807 ATGGCTGTCA
32599817 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
32599841 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
32599865 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
32599889 GGAGAGGATTTTGGAGCTGATAAA
1 GGAGAGGATTTAGGAGCTGATAAG
*
32599913 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAGGATTTAGGAGCTGAT-AAG
32599938 G
1 G
32599939 AGCAAGAGTT
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
24 89 0.97
25 3 0.03
ACGTcount: A:0.34, C:0.05, G:0.40, T:0.21
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:32602304 original size:24 final size:24
Alignment explanation
Indices: 32602277--32602374 Score: 151
Period size: 24 Copynumber: 4.0 Consensus size: 24
32602267 CAGGCTGTCA
32602277 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
32602301 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * *
32602325 GGAGAGGATTTAGAAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
32602349 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
32602374 G
1 G
32602375 AGCAAGAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
24 64 0.96
25 3 0.04
ACGTcount: A:0.37, C:0.05, G:0.38, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:32603489 original size:19 final size:19
Alignment explanation
Indices: 32603462--32603511 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
32603452 TATTTTGGGC
* *
32603462 TTAACGGGCCGAAATCAGG
1 TTAATGGGCCAAAATCAGG
**
32603481 TTAATGGGCCAAAATTGGG
1 TTAATGGGCCAAAATCAGG
32603500 TTAATGGGCCAA
1 TTAATGGGCCAA
32603512 CGGGGCCCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (19 bp):
TTAATGGGCCAAAATCAGG
Found at i:32603883 original size:26 final size:26
Alignment explanation
Indices: 32603776--32603886 Score: 150
Period size: 27 Copynumber: 4.2 Consensus size: 26
32603766 AGGAAGCGTC
* *
32603776 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
*
32603803 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
32603830 CTGGTGGCTCTGCCACGATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
32603857 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
32603883 CTGG
1 CTGG
32603887 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 16 0.21
27 58 0.76
28 2 0.03
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:32607671 original size:34 final size:34
Alignment explanation
Indices: 32607627--32607693 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
32607617 GTGTTAGTAC
* *
32607627 AGCCAAAATCGGGTAAAGATTTTGTGATTTATAT
1 AGCCAAAATCGGGTAAAAAATTTGTGATTTATAT
*
32607661 AGCCAGAATCGGGTAAAAAATTTGTGATTTATA
1 AGCCAAAATCGGGTAAAAAATTTGTGATTTATA
32607694 GCGAAGCATC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33
Consensus pattern (34 bp):
AGCCAAAATCGGGTAAAAAATTTGTGATTTATAT
Found at i:32611764 original size:11 final size:11
Alignment explanation
Indices: 32611748--32611778 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
32611738 ATTTTGTCCC
32611748 TTTTTGGCTCA
1 TTTTTGGCTCA
32611759 TTTTTGGCTCA
1 TTTTTGGCTCA
32611770 TTTTTGGCT
1 TTTTTGGCT
32611779 ATTGGTGCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.06, C:0.16, G:0.19, T:0.58
Consensus pattern (11 bp):
TTTTTGGCTCA
Found at i:32626105 original size:47 final size:47
Alignment explanation
Indices: 32626046--32626175 Score: 170
Period size: 47 Copynumber: 2.8 Consensus size: 47
32626036 GTGCGAATAA
* ** * * *
32626046 TACCTTAATTTGGCTACGGGCCATTATATAGGTATTTTGAGAGAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTAAGAGAAGT
* *
32626093 TACCTTGATTTGGCTACGGGCCATGGTTTAGGTACTCTAAGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTAAGAGAAGT
* *
32626140 TACCTTGATTTGGCTGCGAGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
32626176 TATCGATTGT
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTAAGAGAAGT
Found at i:32644804 original size:38 final size:38
Alignment explanation
Indices: 32644750--32644852 Score: 188
Period size: 38 Copynumber: 2.7 Consensus size: 38
32644740 GCATATACTG
32644750 GGCCGAAGCCTTTTCATATTTCATATTTCATAACACTA
1 GGCCGAAGCCTTTTCATATTTCATATTTCATAACACTA
* *
32644788 GGTCGAAGCCTTTTCATATTTCATATTTCATAACACTG
1 GGCCGAAGCCTTTTCATATTTCATATTTCATAACACTA
32644826 GGCCGAAGCCTTTTCATATTTCATATT
1 GGCCGAAGCCTTTTCATATTTCATATT
32644853 ACTGGGCCGA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 62 1.00
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.39
Consensus pattern (38 bp):
GGCCGAAGCCTTTTCATATTTCATATTTCATAACACTA
Found at i:32644841 original size:31 final size:31
Alignment explanation
Indices: 32644806--32644869 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
32644796 CCTTTTCATA
32644806 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
32644837 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
32644868 TT
1 TT
32644870 ATTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:32645139 original size:25 final size:24
Alignment explanation
Indices: 32645077--32645159 Score: 105
Period size: 25 Copynumber: 3.4 Consensus size: 24
32645067 CTGGAGGCCT
*
32645077 AGCCTCTTTTAAT-AACTAGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
**
32645101 AGCCCTTTCGATAAACTGGGGCAA
1 AGCCCTTTTAATAAACTGGGGCAA
32645125 AGGCCCTTTTAATAAACTGGGGCAAA
1 A-GCCCTTTTAATAAACTGGGGC-AA
32645151 AGCCCTTTT
1 AGCCCTTTT
32645160 CGGTAAACTG
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 6 0.12
24 15 0.29
25 27 0.53
26 3 0.06
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:32645166 original size:26 final size:26
Alignment explanation
Indices: 32645090--32645184 Score: 108
Period size: 25 Copynumber: 3.8 Consensus size: 26
32645080 CTCTTTTAAT
*
32645090 AACTAGGGC-AAAGCCC-TTTCGATA
1 AACTGGGGCAAAAGCCCTTTTCGATA
* *
32645114 AACTGGGGCAAAGGCCCTTTT-AATA
1 AACTGGGGCAAAAGCCCTTTTCGATA
*
32645139 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAAGCCCTTTTCGATA
* *
32645165 AACTGTGGCATAA-CCCTTTT
1 AACTGGGGCAAAAGCCCTTTT
32645185 TGCACTTCCT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
24 8 0.13
25 36 0.60
26 16 0.27
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.25
Consensus pattern (26 bp):
AACTGGGGCAAAAGCCCTTTTCGATA
Found at i:32645255 original size:20 final size:20
Alignment explanation
Indices: 32645232--32645278 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
32645222 TTATGAATAC
32645232 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
32645251 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
32645272 ATCATGT
1 ATCATGT
32645279 ATATCAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:32645816 original size:258 final size:258
Alignment explanation
Indices: 32645359--32645847 Score: 879
Period size: 258 Copynumber: 1.9 Consensus size: 258
32645349 AAACAGTCAT
32645359 TTTCATAATATAAGGGCAATTTCATAATTTTACCAAATATTAGGGATTTTCCATGTTCATTATCA
1 TTTCATAATATAAGGGCAATTTCATAATTTTACCAAATATTAGGGATTTTCCATGTTCATTATCA
* * *
32645424 ATTACTAACAATTCATGTGTTTAAACAGCGATTCTGGCCCATTTTCAGCGAAACTGAGTTATTGG
66 ATTACTAACAATTCATGTGTTTAAACAGCGATTCTAGCCCATTTTCAGCGAAACCGAGTTATTGC
*
32645489 GCCTAAAACCTCTAATGGGCCCTACATAGCCGATTTAGTCATCTAGGCCCGTTCAGCCTATATTC
131 GCCAAAAACCTCTAATGGGCCCTACATAGCCGATTTAGTCATCTAGGCCCGTTCAGCCTATATTC
*
32645554 CATAATGGTATTACCAATCTTAACGCCCAATTTAACCAGATTTCATTTCCTACCAAATTTACC
196 CATAATGGTATTACCAATCTTAACACCCAATTTAACCAGATTTCATTTCCTACCAAATTTACC
* *
32645617 TTTCATAATATAATGGCAATTTCATAATTTTACCAAATATTAGGGATTTTCCATGTTCATTATTA
1 TTTCATAATATAAGGGCAATTTCATAATTTTACCAAATATTAGGGATTTTCCATGTTCATTATCA
* * *
32645682 GTTACTAACAATTCATGTGTTTGAACAGCGATTCTAGCCCATTTTCAGTGAAACCGAGTTATTGC
66 ATTACTAACAATTCATGTGTTTAAACAGCGATTCTAGCCCATTTTCAGCGAAACCGAGTTATTGC
32645747 GCCAAAAACCTCTAATGGGCCCTACATAGCCGATTTAGTCATCTAGGCCCGTTCAGCCTATATTC
131 GCCAAAAACCTCTAATGGGCCCTACATAGCCGATTTAGTCATCTAGGCCCGTTCAGCCTATATTC
*
32645812 CATAATGGTATTACCAATCTTAACACGCAATTTAAC
196 CATAATGGTATTACCAATCTTAACACCCAATTTAAC
32645848 AATTTACCCA
Statistics
Matches: 220, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
258 220 1.00
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.34
Consensus pattern (258 bp):
TTTCATAATATAAGGGCAATTTCATAATTTTACCAAATATTAGGGATTTTCCATGTTCATTATCA
ATTACTAACAATTCATGTGTTTAAACAGCGATTCTAGCCCATTTTCAGCGAAACCGAGTTATTGC
GCCAAAAACCTCTAATGGGCCCTACATAGCCGATTTAGTCATCTAGGCCCGTTCAGCCTATATTC
CATAATGGTATTACCAATCTTAACACCCAATTTAACCAGATTTCATTTCCTACCAAATTTACC
Found at i:32653380 original size:40 final size:41
Alignment explanation
Indices: 32653325--32653419 Score: 147
Period size: 41 Copynumber: 2.3 Consensus size: 41
32653315 CGGTTATTTG
* *
32653325 TGGCACTTAGTGTGCGA-ATCGACATAGCTTTGTCTATATA
1 TGGCACTTAGTGTGCGAGATCGACATAGCTTCGGCTATATA
* *
32653365 TGGCACTTAGTGTGCGAGATCGAGATAGCTTCGGCTATATT
1 TGGCACTTAGTGTGCGAGATCGACATAGCTTCGGCTATATA
32653406 TGGCACTTAGTGTG
1 TGGCACTTAGTGTG
32653420 TGATTTAAGA
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
40 17 0.34
41 33 0.66
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (41 bp):
TGGCACTTAGTGTGCGAGATCGACATAGCTTCGGCTATATA
Found at i:32653403 original size:41 final size:40
Alignment explanation
Indices: 32653325--32653462 Score: 150
Period size: 40 Copynumber: 3.4 Consensus size: 40
32653315 CGGTTATTTG
* * *
32653325 TGGCACTTAGTGTGCGAATCGACATAGCTTTGTCTATATA
1 TGGCACTTAGTGTGCGAATCGAGATAGCTTCGGCTATATA
*
32653365 TGGCACTTAGTGTGCGAGATCGAGATAGCTTCGGCTATATT
1 TGGCACTTAGTGTGCGA-ATCGAGATAGCTTCGGCTATATA
* * ** * * *
32653406 TGGCACTTAGTGTGTGATTTAAGATAACTTCAGCTATGTA
1 TGGCACTTAGTGTGCGAATCGAGATAGCTTCGGCTATATA
* *
32653446 CGACACTTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
32653463 GATATTGAGT
Statistics
Matches: 82, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 47 0.57
41 35 0.43
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGAATCGAGATAGCTTCGGCTATATA
Found at i:32657808 original size:47 final size:46
Alignment explanation
Indices: 32657644--32658000 Score: 248
Period size: 47 Copynumber: 7.6 Consensus size: 46
32657634 ATATATTGCT
* * * *
32657644 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATACGCG-TGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGC-ATCATCT--GTGATGCC
* * *
32657694 GATGCATGTCCCAGACATGTCTTACACTAGCA-CAACTATTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCATCATCTGTGATGCC
* * *
32657738 AATGCGTGTCCCAGACACGTCTTACACTAGCTATC-TCTGTCGATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGC-ATCATCTGT-GATGCC
* * *
32657785 GATGCATGTCCCAGACATATCTTACACTGGCACTCATCTCTG-TGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCA-TCATCTGTGATGCC
* * *
32657831 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT-ATGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGC-ATCATCTGTGAT-GCC
* * * *
32657879 GACGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTG-GATGTC
1 GATGCATGTCCCAGACATGTCTTACACTAG-CATCATCTGTGATGCC
* * * * *
32657925 GACGCCATGTCCCAGACATGGTATTACACTGGCTCTCATAATGTG--GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGC-ATCAT-CTGTGATGCC
* *
32657973 GAGGCATTTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
32658001 GGCGCACAAA
Statistics
Matches: 249, Mismatches: 38, Indels: 44
0.75 0.11 0.13
Matches are distributed among these distances:
44 30 0.12
45 4 0.02
46 42 0.17
47 94 0.38
48 57 0.23
49 17 0.07
50 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCATCATCTGTGATGCC
Found at i:32657893 original size:94 final size:93
Alignment explanation
Indices: 32657644--32658000 Score: 343
Period size: 94 Copynumber: 3.8 Consensus size: 93
32657634 ATATATTGCT
* * *
32657644 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA-TACGCGTGCTGATGCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAGTA--TG-GCCGATGCATGTCCCAG
*
32657708 ACATGTCTTACACTAGCA--CAACTAT-TAGCC
63 ACATGTCTTACACTAGCACTCATCT-TGT-GCC
* * * *
32657738 AATG-CGTGTCCCAGACA-CGTCTTACACTAGCTATC-TCTGTCGAT-GCCGATGCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCAT-AGT--ATGGCCGATGCATGTCCCAG
* *
32657799 ACATATCTTACACTGGCACTCATCTCTGTGCC
63 ACATGTCTTACACTAGCACTCATCT-TGTGCC
* * *
32657831 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGACGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAGTATGGCCGATGCATGTCCCAGACA
* * * *
32657896 TGTCTTACACTAGCCCTCGTCTGGATGTC
66 TGTCTTACACTAGCACTCATCTTG-TGCC
* * * * * * * *
32657925 GACGCCATGTCCCAGACATGGTATTACACTGGCTCTCATAATGTGGCCGAGGCATTTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAGTATGGCCGATGCATGTCCCAGACA
32657990 TGTCTTACACT
66 TGTCTTACACT
32658001 GGCGCACAAA
Statistics
Matches: 219, Mismatches: 32, Indels: 24
0.80 0.12 0.09
Matches are distributed among these distances:
91 33 0.15
92 16 0.07
93 27 0.12
94 123 0.56
95 19 0.09
96 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAGTATGGCCGATGCATGTCCCAGACA
TGTCTTACACTAGCACTCATCTTGTGCC
Found at i:32657904 original size:141 final size:137
Alignment explanation
Indices: 32657644--32658003 Score: 386
Period size: 141 Copynumber: 2.6 Consensus size: 137
32657634 ATATATTGCT
* * *
32657644 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATACGCGTGCTGATGCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-T-C-TGTGCCGATGCATGTCCCAGA
* * * *
32657709 CATGTCTTACACTAGCACAACTATTAGCCAATGCGTGTCCCAGACACGTCTTACACTAGCTATC-
63 CATGTCTTACACTGGCACAACTATTAGCCAACGCATGTCCCAGACACGTCTTACACTAGCCATCG
32657773 TCTGTCGATGCC
128 TCTG--GATGCC
* *
32657785 GATG-CATGTCCCAGACAT-ATCTTACACTGGCACTCATCTCTGTGCCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-TCTGTGCCGATG-CATGTCCCAGAC
* * ** * *
32657848 ATGGTCTTACACTGGCTATCATAGTA-TGGCTGACGCATGTCCCAGACATGTCTTACACTAGCCC
64 AT-GTCTTACACTGGC-A-CA-ACTATTAGCCAACGCATGTCCCAGACACGTCTTACACTAGCCA
*
32657912 TCGTCTGGATGTC
125 TCGTCTGGATGCC
* * ** * *
32657925 GACGCCATGTCCCAGACATGGTATTACACTGGCTCTCATAATGTGGCCGAGGCATTTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTCTGT-GCCGATGCATGTCCCAGACA
32657990 TGTCTTACACTGGC
65 TGTCTTACACTGGC
32658004 GCACAAATCA
Statistics
Matches: 185, Mismatches: 25, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
137 8 0.04
138 15 0.08
139 29 0.16
140 36 0.19
141 68 0.37
142 29 0.16
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (137 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTCTGTGCCGATGCATGTCCCAGACAT
GTCTTACACTGGCACAACTATTAGCCAACGCATGTCCCAGACACGTCTTACACTAGCCATCGTCT
GGATGCC
Found at i:32660925 original size:13 final size:12
Alignment explanation
Indices: 32660907--32660971 Score: 57
Period size: 13 Copynumber: 5.5 Consensus size: 12
32660897 AGATTTTTCT
32660907 TAAATATTATCAC
1 TAAATATTAT-AC
*
32660920 TAAATA--ATGC
1 TAAATATTATAC
32660930 TAAATATTATTAC
1 TAAATATTA-TAC
*
32660943 TAAATA--ATTC
1 TAAATATTATAC
32660953 TAAATATTATCAC
1 TAAATATTAT-AC
32660966 TAAATA
1 TAAATA
32660972 AATCAAAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
10 15 0.36
11 3 0.07
12 3 0.07
13 21 0.50
ACGTcount: A:0.49, C:0.11, G:0.02, T:0.38
Consensus pattern (12 bp):
TAAATATTATAC
Found at i:32660937 original size:23 final size:23
Alignment explanation
Indices: 32660907--32660972 Score: 114
Period size: 23 Copynumber: 2.9 Consensus size: 23
32660897 AGATTTTTCT
32660907 TAAATATTATCACTAAATAATGC
1 TAAATATTATCACTAAATAATGC
* *
32660930 TAAATATTATTACTAAATAATTC
1 TAAATATTATCACTAAATAATGC
32660953 TAAATATTATCACTAAATAA
1 TAAATATTATCACTAAATAA
32660973 ATCAAAATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.50, C:0.11, G:0.02, T:0.38
Consensus pattern (23 bp):
TAAATATTATCACTAAATAATGC
Found at i:32660980 original size:23 final size:23
Alignment explanation
Indices: 32660907--32660980 Score: 105
Period size: 23 Copynumber: 3.2 Consensus size: 23
32660897 AGATTTTTCT
32660907 TAAATATTATCACTAAAT-AATGC
1 TAAATATTATCACTAAATAAAT-C
* *
32660930 TAAATATTATTACTAAATAATTC
1 TAAATATTATCACTAAATAAATC
32660953 TAAATATTATCACTAAATAAATC
1 TAAATATTATCACTAAATAAATC
*
32660976 AAAAT
1 TAAAT
32660981 TTAAAAATTA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
23 43 0.96
24 2 0.04
ACGTcount: A:0.51, C:0.11, G:0.01, T:0.36
Consensus pattern (23 bp):
TAAATATTATCACTAAATAAATC
Found at i:32662444 original size:23 final size:22
Alignment explanation
Indices: 32662414--32662459 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
32662404 TTATCTATTT
32662414 TTATTTAA-GTTAAAATATTATA
1 TTATTTAATGTTAAAA-ATTATA
*
32662436 TTATATTAATTTTAAAAATTATA
1 TTAT-TTAATGTTAAAAATTATA
32662459 T
1 T
32662460 ATGTGATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 11 0.52
24 6 0.29
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
TTATTTAATGTTAAAAATTATA
Found at i:32665859 original size:24 final size:25
Alignment explanation
Indices: 32665824--32665872 Score: 91
Period size: 24 Copynumber: 2.0 Consensus size: 25
32665814 TTTTAAGGGC
32665824 ATTCCTTGTTGAAGATTGTTGGAAA
1 ATTCCTTGTTGAAGATTGTTGGAAA
32665849 ATTCC-TGTTGAAGATTGTTGGAAA
1 ATTCCTTGTTGAAGATTGTTGGAAA
32665873 TGTGGAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 19 0.79
25 5 0.21
ACGTcount: A:0.29, C:0.08, G:0.24, T:0.39
Consensus pattern (25 bp):
ATTCCTTGTTGAAGATTGTTGGAAA
Found at i:32674668 original size:18 final size:18
Alignment explanation
Indices: 32674645--32674679 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32674635 GTAGGTTTTC
*
32674645 AAAATGGAAATGGAAACG
1 AAAATGAAAATGGAAACG
32674663 AAAATGAAAATGGAAAC
1 AAAATGAAAATGGAAAC
32674680 TTGCAATTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.60, C:0.06, G:0.23, T:0.11
Consensus pattern (18 bp):
AAAATGAAAATGGAAACG
Found at i:32675390 original size:196 final size:202
Alignment explanation
Indices: 32674929--32675534 Score: 758
Period size: 196 Copynumber: 3.0 Consensus size: 202
32674919 CGGGTTAGAC
* * *
32674929 CATATTATAGAGTATTGGGTCTAAAAAGCCCAAGAAGTACTCGTAATTGGACTCAATGTGAGAGA
1 CATATTATAGAGTACTGGGTCCAAAAAGCCCAAGAAGTACTCGTAATTGGACTCGATGTGAGAGA
** * *
32674994 GACCTAAAACCCCTCATATACTGAGATGGGACAACAAAACCTTAGTATCATTAACTAGGGTTGTC
66 GACCTAAAACCCCTCATATAAGGAGGTGGGACAAC-AAACCCTAGTATCATT-A-T--GGTTGTC
* **
32675059 GCCCTCTATATCCTAGATAAACTAGGATATTGTTTTTCTAGTGAAAATAAACTTCTATGACTCTA
126 ACCCTCTATATCCTAGATAAACTAGGATATTGTTTTTCTAGTGAAAATAAACTTCTACAACTCTA
32675124 CAAAGGTTGGAT
191 CAAAGGTTGGAT
* * * * * *
32675136 CATATTACAGAGTACTGGGTCCAAAAAGTCTAAGAAGTACTCTTAATT-GAGCTCGATGTAAGAA
1 CATATTATAGAGTACTGGGTCCAAAAAGCCCAAGAAGTACTCGTAATTGGA-CTCGATGTGAGAG
* * * * *
32675200 AGACCTAAAATCTCTCATGTAAGGAGGTGGGACAACAAACCCTACTATCA-T-T-GTCG-C-CCC
65 AGACCTAAAACCCCTCATATAAGGAGGTGGGACAACAAACCCTAGTATCATTATGGTTGTCACCC
* *
32675260 T-TTTATCCTAGATAAACTAGGATATTGTTTTTCTAGTGAAAATAAACTTCTACAACTCTATAAA
130 TCTATATCCTAGATAAACTAGGATATTGTTTTTCTAGTGAAAATAAACTTCTACAACTCTACAAA
32675324 GGTTGGAT
195 GGTTGGAT
* * *
32675332 CATATTATAGAGTACTAGGTCCAAAAAGCCGAAGAAGTACTCGTAATTGGATTCGATGTGAGAGA
1 CATATTATAGAGTACTGGGTCCAAAAAGCCCAAGAAGTACTCGTAATTGGACTCGATGTGAGAGA
* * * *
32675397 GACCCAAAACCCCTTATATAAGGAGGTGAGACAGAAAAACCCTAGTATCATTAACTAGGGTTGTC
66 GACCTAAAACCCCTCATATAAGGAGGTGGGACA-ACAAACCCTAGTATCATT-A-T--GGTTGTC
* * * *
32675462 ACCCTCTATATCCTAGATAAACTACGATATTATTTTTCTAATGGAAATAAACTTCTACAACTCTA
126 ACCCTCTATATCCTAGATAAACTAGGATATTGTTTTTCTAGTGAAAATAAACTTCTACAACTCTA
32675527 CAAAGGTT
191 CAAAGGTT
32675535 CTACCTTCTT
Statistics
Matches: 341, Mismatches: 45, Indels: 26
0.83 0.11 0.06
Matches are distributed among these distances:
196 148 0.43
197 20 0.06
198 2 0.01
199 3 0.01
201 1 0.00
202 1 0.00
204 3 0.01
205 2 0.01
206 18 0.05
207 143 0.42
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (202 bp):
CATATTATAGAGTACTGGGTCCAAAAAGCCCAAGAAGTACTCGTAATTGGACTCGATGTGAGAGA
GACCTAAAACCCCTCATATAAGGAGGTGGGACAACAAACCCTAGTATCATTATGGTTGTCACCCT
CTATATCCTAGATAAACTAGGATATTGTTTTTCTAGTGAAAATAAACTTCTACAACTCTACAAAG
GTTGGAT
Found at i:32678047 original size:13 final size:13
Alignment explanation
Indices: 32678029--32678054 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32678019 CATTTCCAAG
32678029 TCATTTTCATTTT
1 TCATTTTCATTTT
32678042 TCATTTTCATTTT
1 TCATTTTCATTTT
32678055 GGAGAAAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (13 bp):
TCATTTTCATTTT
Found at i:32685614 original size:10 final size:10
Alignment explanation
Indices: 32685599--32685624 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
32685589 TAAAAAATAA
32685599 TTTTTTGAAT
1 TTTTTTGAAT
32685609 TTTTTTGAAT
1 TTTTTTGAAT
32685619 TTTTTT
1 TTTTTT
32685625 AAAAAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (10 bp):
TTTTTTGAAT
Found at i:32690784 original size:19 final size:19
Alignment explanation
Indices: 32690760--32690799 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
32690750 TCATTTTTAG
32690760 AATTTTAGAATTTTCTTTT
1 AATTTTAGAATTTTCTTTT
* *
32690779 AATTTTAGGATTTTTTTTT
1 AATTTTAGAATTTTCTTTT
32690798 AA
1 AA
32690800 GTACACAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.03, G:0.07, T:0.62
Consensus pattern (19 bp):
AATTTTAGAATTTTCTTTT
Found at i:32690918 original size:12 final size:13
Alignment explanation
Indices: 32690881--32690927 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 13
32690871 TATATTTTTT
32690881 TATAATTTCAAAAAA
1 TATAATTT--AAAAA
32690896 TAATAATTTAAAAA
1 T-ATAATTTAAAAA
32690910 TAT-ATTTAAAAA
1 TATAATTTAAAAA
32690922 TA-AATT
1 TATAATT
32690928 CCAATTTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
12 14 0.47
13 2 0.07
14 6 0.20
15 1 0.03
16 7 0.23
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (13 bp):
TATAATTTAAAAA
Found at i:32691858 original size:8 final size:8
Alignment explanation
Indices: 32691847--32691873 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
32691837 CCTTTACTTA
32691847 TTTAAAAT
1 TTTAAAAT
32691855 TTTAAAAT
1 TTTAAAAT
32691863 TTTAAAAT
1 TTTAAAAT
32691871 TTT
1 TTT
32691874 TTAAAATACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (8 bp):
TTTAAAAT
Found at i:32692476 original size:30 final size:30
Alignment explanation
Indices: 32692442--32692501 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
32692432 CATTCATCGT
32692442 GTGCCTAAAACACAACCTACCCACTCTTTC
1 GTGCCTAAAACACAACCTACCCACTCTTTC
*
32692472 GTGCCTAAAACACAACCTACCCCCTCTTTC
1 GTGCCTAAAACACAACCTACCCACTCTTTC
32692502 CATCATCTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.28, C:0.42, G:0.07, T:0.23
Consensus pattern (30 bp):
GTGCCTAAAACACAACCTACCCACTCTTTC
Found at i:32694416 original size:22 final size:22
Alignment explanation
Indices: 32694388--32694432 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
32694378 ATGAGAATTG
32694388 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
32694410 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
32694432 T
1 T
32694433 TTTTTATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:32704715 original size:24 final size:24
Alignment explanation
Indices: 32704637--32704715 Score: 63
Period size: 24 Copynumber: 3.4 Consensus size: 24
32704627 AAATATTGCG
*
32704637 AATTGTATTTACAGAAATGTCGCA
1 AATTGTATTTACAGAAATGTCACA
* * * * **
32704661 AAATGTA-CTATAG-AATGCCATG
1 AATTGTATTTACAGAAATGTCACA
* *
32704683 AACTATATTTACAGAAATGTCACA
1 AATTGTATTTACAGAAATGTCACA
32704707 AATTGTATT
1 AATTGTATT
32704716 GTAGAATTAC
Statistics
Matches: 37, Mismatches: 16, Indels: 4
0.65 0.28 0.07
Matches are distributed among these distances:
22 10 0.27
23 8 0.22
24 19 0.51
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.33
Consensus pattern (24 bp):
AATTGTATTTACAGAAATGTCACA
Found at i:32705045 original size:54 final size:54
Alignment explanation
Indices: 32704987--32705158 Score: 141
Period size: 54 Copynumber: 3.2 Consensus size: 54
32704977 TCCCATAAAG
* * *
32704987 AGAAGGTCGTCAACATAAATCAGCGGGCCGCAAGATTCATAAAATCACGCATGT
1 AGAAGGTCGTCAACATAAATCAGCAGACCGCAAGATTCATAAAATCACGCAAGT
* * *** * * *
32705041 AGAAGGTCATGATTGTAAATCAGCAGACCGCTAGATTCATAAAATCCCGTAAGT
1 AGAAGGTCGTCAACATAAATCAGCAGACCGCAAGATTCATAAAATCACGCAAGT
* * * ** * *
32705095 AGAAGGTCGTGATCGTAAATCA--ATGAACCGTGAGATTCATAAAATCTCGTAAGT
1 AGAAGGTCGTCAACATAAATCAGCA-G-ACCGCAAGATTCATAAAATCACGCAAGT
*
32705149 AGAATGTCGT
1 AGAAGGTCGT
32705159 GATTGTAAAT
Statistics
Matches: 99, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
52 1 0.01
53 1 0.01
54 97 0.98
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (54 bp):
AGAAGGTCGTCAACATAAATCAGCAGACCGCAAGATTCATAAAATCACGCAAGT
Found at i:32705159 original size:54 final size:54
Alignment explanation
Indices: 32705019--32705441 Score: 393
Period size: 54 Copynumber: 7.8 Consensus size: 54
32705009 GCGGGCCGCA
* * * * ***
32705019 AGATTCATAAAATCAC-GCATGTAGAAGGTCATGATTGTAAATCAGCAGACCGCT-
1 AGATTCATAAAATC-CTGTAAGTAGAAGGTCGTGATCGTAAATCAATGGACCG-TG
* *
32705073 AGATTCATAAAATCCCGTAAGTAGAAGGTCGTGATCGTAAATCAATGAACCGTG
1 AGATTCATAAAATCCTGTAAGTAGAAGGTCGTGATCGTAAATCAATGGACCGTG
* * * * *
32705127 AGATTCATAAAAT-CTCGTAAGTAGAATGTCGTGATTGTAAATAAATGGCCCATG
1 AGATTCATAAAATCCT-GTAAGTAGAAGGTCGTGATCGTAAATCAATGGACCGTG
* ** * * * * *
32705181 AAATTTTTAAAATCCAGTAAGTAAAAGGTCGTGATCGTAAATCAAAGGATCGCG
1 AGATTCATAAAATCCTGTAAGTAGAAGGTCGTGATCGTAAATCAATGGACCGTG
* * * * * ** **
32705235 AGATTAATAAAACCCCGTAAGTAGAAAGTTGTGATCGTAAATCAACAGACCACG
1 AGATTCATAAAATCCTGTAAGTAGAAGGTCGTGATCGTAAATCAATGGACCGTG
* * * * * *
32705289 AGATTCGTAAAATCCTATAAATAGAAGGTTGTGATCGTAAATCAATGGATCGCG
1 AGATTCATAAAATCCTGTAAGTAGAAGGTCGTGATCGTAAATCAATGGACCGTG
* * * *
32705343 AGATTCGTAAAATCCTGTAAGTAGAAGGTCATGATCGTAAATTAATGGACCATG
1 AGATTCATAAAATCCTGTAAGTAGAAGGTCGTGATCGTAAATCAATGGACCGTG
* * * *
32705397 AGATTCATAAAATCCTGTAACTAAAATGTCGTGATTGTAAATCAA
1 AGATTCATAAAATCCTGTAAGTAGAAGGTCGTGATCGTAAATCAA
32705442 CTGTAGCTCT
Statistics
Matches: 299, Mismatches: 66, Indels: 8
0.80 0.18 0.02
Matches are distributed among these distances:
53 3 0.01
54 295 0.99
55 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (54 bp):
AGATTCATAAAATCCTGTAAGTAGAAGGTCGTGATCGTAAATCAATGGACCGTG
Found at i:32706341 original size:54 final size:54
Alignment explanation
Indices: 32706271--32706408 Score: 168
Period size: 54 Copynumber: 2.6 Consensus size: 54
32706261 CGTATAATCT
* * * **
32706271 AGTAAAAGGTCGTCATCATAAATCAGCTGATTGAGAGTTTCGTAAAATCCTGTA
1 AGTAAAAGGTCGTCATCATAAATCAACTGATCGAGAGATTCGTAAAATCCTAAA
* * * * *
32706325 AGTAGAAGGTCATCATCGTAAATCAACAGATCGTGAGATTCGTAAAATCCTAAA
1 AGTAAAAGGTCGTCATCATAAATCAACTGATCGAGAGATTCGTAAAATCCTAAA
* *
32706379 AGTAAAAGGTCGTGATTATAAATCAACTGA
1 AGTAAAAGGTCGTCATCATAAATCAACTGA
32706409 AGCTTTTCAA
Statistics
Matches: 68, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 68 1.00
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (54 bp):
AGTAAAAGGTCGTCATCATAAATCAACTGATCGAGAGATTCGTAAAATCCTAAA
Found at i:32708179 original size:33 final size:33
Alignment explanation
Indices: 32708142--32708206 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
32708132 ACGTTCACGG
* *
32708142 TGCCATAACCTA-GTTATGGTCTTTTCATTTAAA
1 TGCCATAACCTAGGCTATGGTC-TTACATTTAAA
32708175 TGCCATAACCTAGGCTATGGTCTTACATTTAA
1 TGCCATAACCTAGGCTATGGTCTTACATTTAA
32708207 CACTTTGCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 21 0.72
34 8 0.28
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (33 bp):
TGCCATAACCTAGGCTATGGTCTTACATTTAAA
Found at i:32711643 original size:54 final size:54
Alignment explanation
Indices: 32711561--32711799 Score: 179
Period size: 54 Copynumber: 4.5 Consensus size: 54
32711551 TAACACGCCT
* ** * ** *
32711561 AGATTCGTAAAATTACGTTAGTAGAAGGTTGTGATCATAAAGCAATGAACCGCG
1 AGATTCATAAAATCCCGTAAGTAGAAGGTCATGATCATAAATCAATGAACCGCG
*
32711615 AGATTCATAAAATCCCGTAAGTAGAAGGTCATGATCATAAATC-A-GATA---TG
1 AGATTCATAAAATCCCGTAAGTAGAAGGTCATGATCATAAATCAATGA-ACCGCG
* * * ** * *
32711665 AGATT-AGTAAAATCCCATAAGTAGAAGGTCATAATCTTAAATCAGCGGACCACG
1 AGATTCA-TAAAATCCCGTAAGTAGAAGGTCATGATCATAAATCAATGAACCGCG
* ** * * * * *
32711719 AGATTCGTAAAATTTCTTAAGTAGAAGGTCGTGAT-AGTAAATCAGTGCACCGCA
1 AGATTCATAAAATCCCGTAAGTAGAAGGTCATGATCA-TAAATCAATGAACCGCG
32711773 AGATT-AGTAAAATCCCGTAAGTAGAAG
1 AGATTCA-TAAAATCCCGTAAGTAGAAG
32711800 ATCGCGGTCA
Statistics
Matches: 146, Mismatches: 29, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
49 1 0.01
50 39 0.27
51 1 0.01
52 3 0.02
53 2 0.01
54 100 0.68
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.25
Consensus pattern (54 bp):
AGATTCATAAAATCCCGTAAGTAGAAGGTCATGATCATAAATCAATGAACCGCG
Found at i:32711924 original size:108 final size:107
Alignment explanation
Indices: 32711613--32711940 Score: 299
Period size: 108 Copynumber: 3.1 Consensus size: 107
32711603 CAATGAACCG
* *
32711613 CGAGATTCATAAAATCCCGTAAGTAGAAGGTCATGATCATAAATCAG-ATAT--GAGATTAGTAA
1 CGAGATTCATAAAATCTCATAAGTAGAAGGTCATGATCATAAATCAGCATATGCGAGATTAGTAA
* * * *
32711675 AATCCCATAAGTAGAAGGTCATAATCTTAAATCAGCGGACCA
66 AATCCCATAAGTAGAAGGTCGTCATCATAAATTAGCGGACCA
* * * * ** *
32711717 CGAGATTCGTAAAATTTCTTAAGTAGAAGGTCGTGAT-AGTAAATCAGTGCA-CCGCAAGATTAG
1 CGAGATTCATAAAATCTCATAAGTAGAAGGTCATGATCA-TAAATCA--GCATATGCGAGATTAG
* * * * *
32711780 TAAAATCCCGTAAGTAGAAGATCG-CGGTCATGAATTAGCGGACTA
63 TAAAATCCCATAAGTAGAAGGTCGTC-ATCATAAATTAGCGGACCA
* * * * * * *
32711825 TGAGATTCATAAAATCTCAAAAGTAGAAGGCCTTGATCATAAATTAGCAGTTTGCGAGATTTGTA
1 CGAGATTCATAAAATCTCATAAGTAGAAGGTCATGATCATAAATCAGCA-TATGCGAGATTAGTA
* * ** *
32711890 AAATCCCATAAGTTGAAGGTCGTCATCGTAAATTAGCAAACCT
65 AAATCCCATAAGTAGAAGGTCGTCATCATAAATTAGCGGACCA
32711933 CGAGATTC
1 CGAGATTC
32711941 GTAATAAGCC
Statistics
Matches: 173, Mismatches: 40, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
103 1 0.01
104 39 0.23
106 4 0.02
107 1 0.01
108 126 0.73
109 2 0.01
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (107 bp):
CGAGATTCATAAAATCTCATAAGTAGAAGGTCATGATCATAAATCAGCATATGCGAGATTAGTAA
AATCCCATAAGTAGAAGGTCGTCATCATAAATTAGCGGACCA
Found at i:32712311 original size:54 final size:54
Alignment explanation
Indices: 32712253--32712542 Score: 291
Period size: 54 Copynumber: 5.4 Consensus size: 54
32712243 ACATCATTAG
* * * *
32712253 AAGGTCGTGAT-AGTAAATCAGCGGGCCAGGAGATTCGTAAAATCCTATAAATAA
1 AAGGTCGTGATCA-TAAATCAGCGGACCACGAGATTTGTAAAATCCTATAAGTAA
* * *
32712307 AAGGTCGTGATCATAAATTAGCAGACTACGAGATTTGTAAAATTCCT-TAAGTAA
1 AAGGTCGTGATCATAAATCAGCGGACCACGAGATTTGTAAAA-TCCTATAAGTAA
* * * * *
32712361 AAGGTCATGATCGTAAA-CTGGTGGACCACGAGATTTGTAAAATCCTGTAAGTAA
1 AAGGTCGTGATCATAAATC-AGCGGACCACGAGATTTGTAAAATCCTATAAGTAA
* * *
32712415 AAGGTTGTGATCATCAATCAGCGGACCACGAGATTTGTAAAAT-CTAGTAAGTAC
1 AAGGTCGTGATCATAAATCAGCGGACCACGAGATTTGTAAAATCCTA-TAAGTAA
** ** * * *
32712469 AAGGTCGTGATCATAAATCAGTAGACCTTGAGATTCGAAAAATCCTGTAAGTAA
1 AAGGTCGTGATCATAAATCAGCGGACCACGAGATTTGTAAAATCCTATAAGTAA
* **
32712523 AAGGTTGTGATTGTAAATCA
1 AAGGTCGTGATCATAAATCA
32712543 ACTGAAGCTC
Statistics
Matches: 194, Mismatches: 35, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
53 6 0.03
54 180 0.93
55 8 0.04
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (54 bp):
AAGGTCGTGATCATAAATCAGCGGACCACGAGATTTGTAAAATCCTATAAGTAA
Found at i:32713198 original size:400 final size:401
Alignment explanation
Indices: 32712398--32713275 Score: 891
Period size: 400 Copynumber: 2.2 Consensus size: 401
32712388 ACGAGATTTG
* * * * * **
32712398 TAAAATC-CTGTAAGTAAAAGGTTGTGATCATCAATCAGCGGACCACGAGATTTGTAAAATCTAG
1 TAAAATCAC-GTAAGTAGAAGGTTGTGATCATAAATTAGCGGA-CATGAGATTCGTAAAATCCCG
* * * * ** *
32712462 TAAGTACAAGGTCGTGATCATAAATCAGTAGACCTTGAGATTCGAAAAATCCTGTAAGTAAAAGG
64 TAAGTAAAAGGTCCTAATCATAAATCAGCAGACCACGAGATTCGAAAAATCCAGTAAGTAAAAGG
* * * * *
32712527 TTGTGATTGTAAATCAACTGAAGCTCTTCAGAAAATTACTTGTTTTTCTGAGAAGATCAATCTAT
129 TCGTGATTGTAAACCAACTGAAGCTCTTCAGAAAATTACTTGTTTTTCTAAGAAGATCAATCCAA
* ** *
32712592 TTCAAGCTTCATTCAGAAGTATGGTGAAGAGAACTAGCTTTAGCCACACGAAGGAATTGTAAAAA
194 TTCAAGCCTCATTCAGAAGTATGGTGAAGAGAACTAGCTTTAGCCACAAAAAGGAATTATAAAAA
* * * * *
32712657 AAATTGATTCATTTATTCTTCTTTTTTCAAGGTCAGTTTTGAGTTCTTCCTCAACATGGCTATAT
259 AAATTAATTCATCTATTCTTCTTTTTTCAAGGTCAGTTTTGAGTTATTCCTCAACACGCCTATAT
* * * * *
32712722 GCATAATCTCTAACATCTAACTTAATCTGAATGGTAGAGTGGTTAGTTTTGAGTTCTTCCTGAAC
324 GCATAATCTCTAACATCTAACTTAATCTGAAGGGAACAGTGGTCAGTTTTGAGTTCTTCCTCAAC
**
32712787 ATGAATAGATTCA
389 ACCAATAGATTCA
* * *
32712800 TAAAATCACGTAAGTAGAAGGTTGTGATCATAAATTAGTGGA-ATGTGAGTCGTAAAATCCCGTA
1 TAAAATCACGTAAGTAGAAGGTTGTGATCATAAATTAGCGGACATGAGATTCGTAAAATCCCGTA
* * * *
32712864 AGTAGAAGGTCCTAATCGTAAATCAGCGGACCACGAGATTCGTAAAATCTCAG-AAG-ATAAAGG
66 AGTAAAAGGTCCTAATCATAAATCAGCAGACCACGAGATTCGAAAAATC-CAGTAAGTA-AAAGG
* * * *
32712927 TCGTGATTGTAAACCAATTGAAGCTTTTCAGAAAGTT-CTTGATTTTTCTAAGAAGATCGATCCA
129 TCGTGATTGTAAACCAACTGAAGCTCTTCAGAAAATTACTTG-TTTTTCTAAGAAGATCAATCCA
* * **
32712991 ATTCAAGCCTCATTTCAGACGTATGGTGAAGAGAACTAGCTTTTGCTTCAAAAAGGCAA-TAT-A
193 ATTCAAGCCTCA-TTCAGAAGTATGGTGAAGAGAACTAGCTTTAGCCACAAAAAGG-AATTATAA
* * * *
32713054 ACAGAATTAATTCCA-CTA-TCTTCTTTCTTTCAAGGTTAGTTTTGAGTTATTTCTCAACACGCC
256 AAAAAATTAATT-CATCTATTCTTCTTT-TTTCAAGGTCAGTTTTGAGTTATTCCTCAACACGCC
* * * * * ** * *
32713117 TATATTCATTATCTTTAGCATCTAATTTGCTCTGAAGGGAACA-TATGTCCA-TTTTGAGTTTTT
319 TATATGCATAATCTCTAACATCTAACTTAATCTGAAGGGAACAGT-GGT-CAGTTTTGAGTTCTT
** *
32713180 CCTCAACACCCCTAGATTCG
382 CCTCAACACCAATAGATTCA
* * * * *
32713200 TAAAATTCTA--TAAGTAGAAGATCGCGATCGTAAATTAGCGGACCTCGAGATTCGTAAAATCCC
1 TAAAA-TC-ACGTAAGTAGAAGGTTGTGATCATAAATTAGCGGACAT-GAGATTCGTAAAATCCC
*
32713263 TTAAGTAAAAGGT
63 GTAAGTAAAAGGT
32713276 TGTGATCTTA
Statistics
Matches: 387, Mismatches: 75, Indels: 28
0.79 0.15 0.06
Matches are distributed among these distances:
399 14 0.04
400 260 0.67
401 47 0.12
402 65 0.17
403 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32
Consensus pattern (401 bp):
TAAAATCACGTAAGTAGAAGGTTGTGATCATAAATTAGCGGACATGAGATTCGTAAAATCCCGTA
AGTAAAAGGTCCTAATCATAAATCAGCAGACCACGAGATTCGAAAAATCCAGTAAGTAAAAGGTC
GTGATTGTAAACCAACTGAAGCTCTTCAGAAAATTACTTGTTTTTCTAAGAAGATCAATCCAATT
CAAGCCTCATTCAGAAGTATGGTGAAGAGAACTAGCTTTAGCCACAAAAAGGAATTATAAAAAAA
ATTAATTCATCTATTCTTCTTTTTTCAAGGTCAGTTTTGAGTTATTCCTCAACACGCCTATATGC
ATAATCTCTAACATCTAACTTAATCTGAAGGGAACAGTGGTCAGTTTTGAGTTCTTCCTCAACAC
CAATAGATTCA
Found at i:32713288 original size:54 final size:54
Alignment explanation
Indices: 32713193--32713366 Score: 163
Period size: 54 Copynumber: 3.2 Consensus size: 54
32713183 CAACACCCCT
* * * * * *
32713193 AGATTCGTAAAAT-TCTATAAGTAGAAGATCGCGATCGTAAATTAGCGGACCTCG
1 AGATTCATAAAATCCCT-TAAGTAAAAGGTCGTGATCATAAATTAGCGGACCTCG
* * * *
32713247 AGATTCGTAAAATCCCTTAAGTAAAAGGTTGTGATCTTAAATTAGCGGA-TTGCG
1 AGATTCATAAAATCCCTTAAGTAAAAGGTCGTGATCATAAATTAGCGGACCT-CG
* * * * * * *
32713301 AGATTCATAAAATCCCTTAATTATAATGTCGTGATAATAAATTAGTGGTCCACG
1 AGATTCATAAAATCCCTTAAGTAAAAGGTCGTGATCATAAATTAGCGGACCTCG
32713355 AGATTCATAAAA
1 AGATTCATAAAA
32713367 GGTCGTGATT
Statistics
Matches: 99, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
53 1 0.01
54 96 0.97
55 2 0.02
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (54 bp):
AGATTCATAAAATCCCTTAAGTAAAAGGTCGTGATCATAAATTAGCGGACCTCG
Found at i:32713513 original size:54 final size:54
Alignment explanation
Indices: 32713397--32713528 Score: 133
Period size: 54 Copynumber: 2.4 Consensus size: 54
32713387 GAGCCATGAG
* * * *
32713397 ATTCGTATAATCTAGTAAGTAAAAAGTCATCATCGTAAATCAGCTAACTTAGAG
1 ATTCGTAAAATATAGTAAGTAAAAAGTCATCATCGTAAATCAGCTAACGTAGAA
* * * * * *
32713451 TTTTGTAAAATATCGTAAGTAGAACGTCATCATCGTAAATCAGCGTACCGT-GAA
1 ATTCGTAAAATATAGTAAGTAAAAAGTCATCATCGTAAATCAGC-TAACGTAGAA
*
32713505 ATTCGTAAAATCTCAG-AAGTAAAA
1 ATTCGTAAAATAT-AGTAAGTAAAA
32713529 GGTTTTGATT
Statistics
Matches: 61, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
54 56 0.92
55 5 0.08
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (54 bp):
ATTCGTAAAATATAGTAAGTAAAAAGTCATCATCGTAAATCAGCTAACGTAGAA
Found at i:32714653 original size:54 final size:54
Alignment explanation
Indices: 32714591--32714850 Score: 208
Period size: 54 Copynumber: 4.8 Consensus size: 54
32714581 CAACACGCCT
* **
32714591 AGATTCGTAAAATTCCGTAAGTAGAAGGTCATGATTGTAAATTAGCGGACTGCA
1 AGATTCGTAAAATTCCGTAAGTAGAAGGTCATGATTGTAAATCAGCGGACCACA
* * * * *
32714645 AGATTCGTAAAA-TCCTATAAGTAGACGGTTATGATTGTGAATCAGCTGACCACA
1 AGATTCGTAAAATTCC-GTAAGTAGAAGGTCATGATTGTAAATCAGCGGACCACA
* ****
32714699 AGATTCGTAAAATT--GATAAAGTAGAAGGTCATGATTGCAAATCAATTCACCACA
1 AGATTCGTAAAATTCCG-T-AAGTAGAAGGTCATGATTGTAAATCAGCGGACCACA
* ** * * *
32714753 AGATTTGTAAAA-TCTCGTAAGTAGAAGGTTGTAATCGTAAATCAGCGGACCACG
1 AGATTCGTAAAATTC-CGTAAGTAGAAGGTCATGATTGTAAATCAGCGGACCACA
* * * * *
32714807 AGATT--TATAATAACACATAAGTAAAAGGTCGTGATTGTAAATCA
1 AGATTCGTAAAAT-TC-CGTAAGTAGAAGGTCATGATTGTAAATCA
32714851 ACTGAAGCTT
Statistics
Matches: 162, Mismatches: 35, Indels: 18
0.75 0.16 0.08
Matches are distributed among these distances:
52 4 0.02
53 5 0.03
54 150 0.93
55 2 0.01
56 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.27
Consensus pattern (54 bp):
AGATTCGTAAAATTCCGTAAGTAGAAGGTCATGATTGTAAATCAGCGGACCACA
Found at i:32714796 original size:108 final size:107
Alignment explanation
Indices: 32714591--32714852 Score: 240
Period size: 108 Copynumber: 2.4 Consensus size: 107
32714581 CAACACGCCT
* * * * **
32714591 AGATTCGTAAAATTCCGTAAGTAGAAGGTCATGATTGTAAATTAGCGGACTGCAAGATTCGTAAA
1 AGATTCGTAAAATT-CGTAAGTAGAAGGTCATGATTGCAAATCAACGCACCACAAGATTCGTAAA
* * * * *
32714656 ATCCTATAAGTAGACGGTTATGATTGTGAATCAGCTGACCACA
65 ATCCTATAAGTAGAAGGTTATAATCGTAAATCAGCGGACCACA
** *
32714699 AGATTCGTAAAATT-GATAAAGTAGAAGGTCATGATTGCAAATCAATTCACCACAAGATTTGTAA
1 AGATTCGTAAAATTCG-T-AAGTAGAAGGTCATGATTGCAAATCAACGCACCACAAGATTCGTAA
* * *
32714763 AAT-CTCGTAAGTAGAAGGTTGTAATCGTAAATCAGCGGACCACG
64 AATCCT-ATAAGTAGAAGGTTATAATCGTAAATCAGCGGACCACA
** ** * * * *
32714807 AGATTTATAATAACACATAAGTAAAAGGTCGTGATTGTAAATCAAC
1 AGATTCGTAA-AATTCGTAAGTAGAAGGTCATGATTGCAAATCAAC
32714853 TGAAGCTTTT
Statistics
Matches: 123, Mismatches: 26, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
106 1 0.01
107 3 0.02
108 116 0.94
109 3 0.02
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (107 bp):
AGATTCGTAAAATTCGTAAGTAGAAGGTCATGATTGCAAATCAACGCACCACAAGATTCGTAAAA
TCCTATAAGTAGAAGGTTATAATCGTAAATCAGCGGACCACA
Found at i:32715165 original size:54 final size:54
Alignment explanation
Indices: 32715101--32715339 Score: 164
Period size: 54 Copynumber: 4.4 Consensus size: 54
32715091 CAACACGCCT
* *
32715101 AGATTCGTAAAATCATGTTAGTAGAAGGTCGTGATCATAAATTAGCGGACCGTG
1 AGATTCGTAAAATCATGTAAGTAGAAGGTCGTGATCATAAATCAGCGGACCGTG
* * * * * * * ***
32715155 AGATTTGTAAAATCTTGTAAGTTGAATGTCATGATTGA-AAATTAGCGGACTACG
1 AGATTCGTAAAATCATGTAAGTAGAAGGTCGTGA-TCATAAATCAGCGGACCGTG
** *** * ** * *
32715209 AGATTTATAAAATCCCATAAGTAGAAGGTTGTGATTGTAAATCAACGAAGCACG-G
1 AGATTCGTAAAATCATGTAAGTAGAAGGTCGTGATCATAAATCAGCGGA-C-CGTG
*
32715264 -GATTCGTAAAAT-ATGGTAAGTAGAAGGTCGTGATCATAAATCAGCAGACC-TCG
1 AGATTCGTAAAATCAT-GTAAGTAGAAGGTCGTGATCATAAATCAGCGGACCGT-G
* **
32715317 AGATTCATAAAATCCCGTAAGTA
1 AGATTCGTAAAATCATGTAAGTA
32715340 ATATGCCGTG
Statistics
Matches: 137, Mismatches: 39, Indels: 18
0.71 0.20 0.09
Matches are distributed among these distances:
52 1 0.01
53 3 0.02
54 129 0.94
55 4 0.03
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.28
Consensus pattern (54 bp):
AGATTCGTAAAATCATGTAAGTAGAAGGTCGTGATCATAAATCAGCGGACCGTG
Found at i:32715233 original size:510 final size:508
Alignment explanation
Indices: 32714252--32715761 Score: 1751
Period size: 510 Copynumber: 3.0 Consensus size: 508
32714242 TTATATTTGA
* * * *** * * *
32714252 AAAATCAT-GTAAGTAGAAGGTCGTGATCGTAAATCAAC-GAACTGTGAGATTCCTAAAATCCCG
1 AAAAT-ATCGTAAGTAGAAGGTCGTAATCATAAATCAGCAG-ACCACGAGATTCATAAAATCACA
* * *
32714315 TAAGTAAAAAGTTGTGATTGTAAATCAACTGAAGCTCTTAAGAAAGTTCCTTGTTTTACTAAATA
64 TAAGTAAAAAGTCGTGATTGTAAATCAACTGAAGCTCTTAAGAAAGTTCCTTGTTTTTCTAAGTA
* * * *
32714380 GATCGATCCATGTCAAGCCTCATTTCAGATATTTGGTGAAAAGAATTAGCTTTAGCCTCACAAAG
129 GATCGATCCATTTCAAGCCTCATTTCAGATATATGGTGAAGAGAACTAGCTTTAGCCTCACAAAG
* *
32714445 GCAATGTAACAAATTTAATTCTTTTATTCTCTTT-TTTCAAGGTCAGTTTTGAGTTCTTCCTCAA
194 GCAATGTAACAAATTTAATTCCTCTA-TCT-TTTCTTTCAAGGTCAGTTTTGAGTTCTTCCTCAA
* * * * * * *
32714509 CATGCCTATGTTAACCATCTGTAGCATCTAACTTGCTTTAAAGGCCAAAAAGGTCAATTTTTAGT
257 CACGCCTATATTAATCATCTCTAGCATCTAACTTGCTTTGAAGGGCAGAAAGGTCAATTTTTAGT
* *
32714574 TCTTCTTCAACACGCCTAGATTCGTAAAATTC-CGTAAGTAGAAGGTCATGATTGTAAATTAGCG
322 TCTTCTTCAACACGCCTAGATTCGTAAAA-TCACGTAAGTAGAAGGTCGTGATCGTAAATTAGCG
* * * ** * * * * *
32714638 GACTGCAAGATTCGTAAAATCCTATAAGTAGACGGTTATGATTGTGAATCAGCTGACCACAAGAT
386 GACCGCGAGATTTGTAAAATCCTATAAGTAGAATGTCATGATTGTAAATCAGCGGACTACGAGAT
* * * * *** *
32714703 TCGTAAAAT-TGATAAAGTAGAAGGTCATGATTGCAAATCAATTCACCACAAGATTTGT
451 TTGTAAAATCTCAT-AAGTAGAAGGTCGTGATTGTAAATCAACGAACCACAAGATTCGT
* * * * *
32714761 AAAATCTCGTAAGTAGAAGGTTGTAATCGTAAATCAGCGGACCACGAGATTTATAATAA-CACAT
1 AAAATATCGTAAGTAGAAGGTCGTAATCATAAATCAGCAGACCACGAGATTCATAA-AATCACAT
* * * * * * *
32714825 AAGTAAAAGGTCGTGATTGTAAATCAACTGAAGCTTTTAAGTAAGTTCCTTATTTTTCTGAGCAA
65 AAGTAAAAAGTCGTGATTGTAAATCAACTGAAGCTCTTAAGAAAGTTCCTTGTTTTTCTAAGTAG
* *
32714890 ATCGATCCATTTCAAGCCTCATTTCAAATATATGGTGAAGAGAACTAGCTTCAGCCTCACAAAGG
130 ATCGATCCATTTCAAGCCTCATTTCAGATATATGGTGAAGAGAACTAGCTTTAGCCTCACAAAGG
* * *
32714955 CAATGTAACAAATTTGATTCCTCTAACTTAATTCTTTCAAGGTTAGTTTTGAGTTCTTCCTCAAC
195 CAATGTAACAAATTTAATTCCTCTATCTT--TTCTTTCAAGGTCAGTTTTGAGTTCTTCCTCAAC
* *
32715020 ACGCTTATATTAATCATCTCTAGCATCTAACTTGCTTTGAAGGGCAGAAAGGTCAGTTTTTAGTT
258 ACGCCTATATTAATCATCTCTAGCATCTAACTTGCTTTGAAGGGCAGAAAGGTCAATTTTTAGTT
* * *
32715085 CTTCTTCAACACGCCTAGATTCGTAAAATCATGTTAGTAGAAGGTCGTGATCATAAATTAGCGGA
323 CTTCTTCAACACGCCTAGATTCGTAAAATCACGTAAGTAGAAGGTCGTGATCGTAAATTAGCGGA
* * * * * *
32715150 CCGTGAGATTTGTAAAATCTTGTAAGTTGAATGTCATGATTGAAAATTAGCGGACTACGAGATTT
388 CCGCGAGATTTGTAAAATCCTATAAGTAGAATGTCATGATTGTAAATCAGCGGACTACGAGATTT
* * * * **
32715215 ATAAAATCCCATAAGTAGAAGGTTGTGATTGTAAATCAACGAAGCACGGGATTCGT
453 GTAAAATCTCATAAGTAGAAGGTCGTGATTGTAAATCAACGAACCACAAGATTCGT
* * * * *
32715271 AAAATATGGTAAGTAGAAGGTCGTGATCATAAATCAGCAGACCTCGAGATTCATAAAATCCCGTA
1 AAAATATCGTAAGTAGAAGGTCGTAATCATAAATCAGCAGACCACGAGATTCATAAAATCACATA
* * * *
32715336 AGTAATATGCCGTGATTGTAAATCAACAT-AAGCTCTTAAGAAAGTTCTTTGTTTTTCTAAGTAG
66 AGTAAAAAGTCGTGATTGTAAATCAAC-TGAAGCTCTTAAGAAAGTTCCTTGTTTTTCTAAGTAG
* * * ***
32715400 ATCGAACCATTTCAATCCTCATTTTAGGCGTATGGTGAAGAGAACTAGCTTTAGCCTCACAAAGG
130 ATCGATCCATTTCAAGCCTCATTTCAGATATATGGTGAAGAGAACTAGCTTTAGCCTCACAAAGG
* *
32715465 TAATGTAACAAATTTAATTCCTCTATCCTCTTTCTTTTAAGGTCAGTTTTGAGTTCTTCCTCAAC
195 CAATGTAACAAATTTAATTCCTCTAT-CT-TTTCTTTCAAGGTCAGTTTTGAGTTCTTCCTCAAC
* * ** * *
32715530 TCGCCTATATTAATCATCTCTAGCATCTAACTTGCTCTGAAAAG-ATGAGATGTCAATTTTTAGT
258 ACGCCTATATTAATCATCTCTAGCATCTAACTTGCTTTGAAGGGCA-GAAAGGTCAATTTTTAGT
* * * * * * * *
32715594 TTTTCTTCAAAATGCCTAGATTCGTCAAAATTACGTCAGTAGAAAGTCGTGATCGTAAATCAGTG
322 TCTTCTTCAACACGCCTAGATTCGT-AAAATCACGTAAGTAGAAGGTCGTGATCGTAAATTAGCG
* * * * * ** *
32715659 GAACACGAGATTTGTAAAATCCTATAAATAGAATGTCATGATCGTAAATGAATGGA-TAGCGAGG
386 GACCGCGAGATTTGTAAAATCCTATAAGTAGAATGTCATGATTGTAAATCAGCGGACTA-CGAGA
*
32715723 TTTGTAAAATCTCATAAGTAAAAGGTCGTGATTGTAAAT
450 TTTGTAAAATCTCATAAGTAGAAGGTCGTGATTGTAAAT
32715762 TAGCGGATCA
Statistics
Matches: 842, Mismatches: 144, Indels: 28
0.83 0.14 0.03
Matches are distributed among these distances:
507 1 0.00
508 3 0.00
509 189 0.22
510 528 0.63
511 120 0.14
512 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (508 bp):
AAAATATCGTAAGTAGAAGGTCGTAATCATAAATCAGCAGACCACGAGATTCATAAAATCACATA
AGTAAAAAGTCGTGATTGTAAATCAACTGAAGCTCTTAAGAAAGTTCCTTGTTTTTCTAAGTAGA
TCGATCCATTTCAAGCCTCATTTCAGATATATGGTGAAGAGAACTAGCTTTAGCCTCACAAAGGC
AATGTAACAAATTTAATTCCTCTATCTTTTCTTTCAAGGTCAGTTTTGAGTTCTTCCTCAACACG
CCTATATTAATCATCTCTAGCATCTAACTTGCTTTGAAGGGCAGAAAGGTCAATTTTTAGTTCTT
CTTCAACACGCCTAGATTCGTAAAATCACGTAAGTAGAAGGTCGTGATCGTAAATTAGCGGACCG
CGAGATTTGTAAAATCCTATAAGTAGAATGTCATGATTGTAAATCAGCGGACTACGAGATTTGTA
AAATCTCATAAGTAGAAGGTCGTGATTGTAAATCAACGAACCACAAGATTCGT
Found at i:32715701 original size:54 final size:54
Alignment explanation
Indices: 32715631--32715966 Score: 227
Period size: 54 Copynumber: 6.2 Consensus size: 54
32715621 AAATTACGTC
32715631 AGTAGAAAGTCGTGATCGTAAATCAGTGGAACACGAGATTTGTAAAATCCTATA
1 AGTAGAAAGTCGTGATCGTAAATCAGTGGAACACGAGATTTGTAAAATCCTATA
* * * * * * *
32715685 AATAGAATGTCATGATCGTAAATGAATGGATA-GCGAGGTTTGTAAAAT-CTCATA
1 AGTAGAAAGTCGTGATCGTAAATCAGTGGA-ACACGAGATTTGTAAAATCCT-ATA
* * * * *
32715739 AGTA-AAAGGTCGTGATTGTAAATTAGCGGATCACGAGGTTTGTAAAATTCCT-TA
1 AGTAGAAA-GTCGTGATCGTAAATCAGTGGAACACGAGATTTGTAAAA-TCCTATA
* * * * * * **
32715793 AGTA-AAAGGTCATGATCGTAAATCTGTGGACCATGAGATTAGTGAAATCCCGTA
1 AGTAGAAA-GTCGTGATCGTAAATCAGTGGAACACGAGATTTGTAAAATCCTATA
* * * * *
32715847 AGTAGAAAGTTGTGATGGTAAATCAGTGG-ACTACGATATTCGTAAAATCC-AGTC
1 AGTAGAAAGTCGTGATCGTAAATCAGTGGAAC-ACGAGATTTGTAAAATCCTA-TA
* * * * * * * * * **
32715901 AGTAGAAGGTCTTAATAGTAAATCAGTAGACCTCGATATTCGTAAAATCCCGTA
1 AGTAGAAAGTCGTGATCGTAAATCAGTGGAACACGAGATTTGTAAAATCCTATA
*
32715955 AGTAGAAGGTCG
1 AGTAGAAAGTCG
32715967 CCATCATAAA
Statistics
Matches: 221, Mismatches: 49, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
53 8 0.04
54 205 0.93
55 6 0.03
56 2 0.01
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (54 bp):
AGTAGAAAGTCGTGATCGTAAATCAGTGGAACACGAGATTTGTAAAATCCTATA
Found at i:32715841 original size:108 final size:108
Alignment explanation
Indices: 32715631--32715896 Score: 261
Period size: 108 Copynumber: 2.5 Consensus size: 108
32715621 AAATTACGTC
* * *
32715631 AGTAGAAAGTCGTGATCGTAAATCAGTGGAACACGAGATTTGTAAAATCCTATAAATAGAATGTC
1 AGTAGAAAGTCGTGATCGTAAATCAGCGGAACACGAGATTTGTAAAATCCTATAAATAAAAGGTC
* * * * *
32715696 ATGATCGTAAATGAATGGATAGCGAGGTTTGTAAAATCTCATA
66 ATGATCGTAAATCAATGGACAGCGAGATTAGTAAAATCCCATA
* * * * *
32715739 AGTA-AAAGGTCGTGATTGTAAATTAGCGGATCACGAGGTTTGTAAAATTCCT-TAAGTAAAAGG
1 AGTAGAAA-GTCGTGATCGTAAATCAGCGGAACACGAGATTTGTAAAA-TCCTATAAATAAAAGG
** * * *
32715802 TCATGATCGTAAATCTGTGGACCA-TGAGATTAGTGAAATCCCGTA
64 TCATGATCGTAAATCAATGGA-CAGCGAGATTAGTAAAATCCCATA
* * * * *
32715847 AGTAGAAAGTTGTGATGGTAAATCAGTGG-ACTACGATATTCGTAAAATCC
1 AGTAGAAAGTCGTGATCGTAAATCAGCGGAAC-ACGAGATTTGTAAAATCC
32715897 AGTCAGTAGA
Statistics
Matches: 127, Mismatches: 26, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
107 7 0.06
108 112 0.88
109 8 0.06
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.28
Consensus pattern (108 bp):
AGTAGAAAGTCGTGATCGTAAATCAGCGGAACACGAGATTTGTAAAATCCTATAAATAAAAGGTC
ATGATCGTAAATCAATGGACAGCGAGATTAGTAAAATCCCATA
Found at i:32716030 original size:108 final size:106
Alignment explanation
Indices: 32715777--32716031 Score: 242
Period size: 108 Copynumber: 2.4 Consensus size: 106
32715767 GATCACGAGG
* * * * * *
32715777 TTTGTAAAATTCCTTAAGTAAAAGGTCATGATCGTAAATCTGTGGACCATGAGATTAGTGAAATC
1 TTTGTAAAATCCCGTAAGTAAAAGGTCATGATAGTAAATCAGTAGACCATGAGATTAGTAAAATC
* ** ** * *
32715842 CCGTAAGTAGAAAGTTGTGATGGTAAATCAGTGGACTACGA
66 CCGTAAGTAGAAAGTCGCCATCATAAATCAGTAGACTAAGA
* * * * * * *
32715883 TATTCGTAAAATCCAGTCAGTAGAAGGTCTTAATAGTAAATCAGTAGACC-TCGATATTCGTAAA
1 T-TT-GTAAAATCCCGTAAGTAAAAGGTCATGATAGTAAATCAGTAGACCAT-GAGATTAGTAAA
* *
32715947 ATCCCGTAAGTAGAAGGTCGCCATCATAAATTAGTAGACTTTAAGA
63 ATCCCGTAAGTAGAAAGTCGCCATCATAAATCAGTAGAC--TAAGA
* *
32715993 TTTGTAAAATCCCGTAAGTAAAAGGTCGTGATTGTAAAT
1 TTTGTAAAATCCCGTAAGTAAAAGGTCATGATAGTAAAT
32716032 TAACTAAAGC
Statistics
Matches: 116, Mismatches: 28, Indels: 8
0.76 0.18 0.05
Matches are distributed among these distances:
106 1 0.01
107 3 0.03
108 105 0.91
109 2 0.02
110 5 0.04
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (106 bp):
TTTGTAAAATCCCGTAAGTAAAAGGTCATGATAGTAAATCAGTAGACCATGAGATTAGTAAAATC
CCGTAAGTAGAAAGTCGCCATCATAAATCAGTAGACTAAGA
Found at i:32716031 original size:54 final size:53
Alignment explanation
Indices: 32715631--32716033 Score: 201
Period size: 54 Copynumber: 7.5 Consensus size: 53
32715621 AAATTACGTC
* *** **
32715631 AGTAGAAA-GTCGTGATCGTAAATCAGTGGAACACGAGATTTGTAAAATCCTATA
1 AGTA-AAAGGTCGTGATCGTAAATTAGTGG-ACTTAAGATTTGTAAAATCCCGTA
* * * * * * * * *
32715685 AATAGAATGTCATGATCGTAAATGAATGGA--TAGCGAGGTTTGTAAAATCTCATA
1 AGTAAAAGGTCGTGATCGTAAATTAGTGGACTTA---AGATTTGTAAAATCCCGTA
* * * * * *
32715739 AGTAAAAGGTCGTGATTGTAAATTAGCGGA-TCACGAGGTTTGTAAAATTCCTTA
1 AGTAAAAGGTCGTGATCGTAAATTAGTGGACTTA--AGATTTGTAAAATCCCGTA
* * * * *
32715793 AGTAAAAGGTCATGATCGTAAATCT-GTGGACCATGAGATTAGTGAAATCCCGTA
1 AGTAAAAGGTCGTGATCGTAAAT-TAGTGGA-CTTAAGATTTGTAAAATCCCGTA
* * * * * *
32715847 AGTAGAAA-GTTGTGATGGTAAATCAGTGGAC-TACGATATTCGTAAAATCCAGTC
1 AGTA-AAAGGTCGTGATCGTAAATTAGTGGACTTAAGAT-TT-GTAAAATCCCGTA
* * * * * * * *
32715901 AGTAGAAGGTCTTAATAGTAAATCAGTAGACCT-CGATATTCGTAAAATCCCGTA
1 AGTAAAAGGTCGTGATCGTAAATTAGTGGACTTAAGAT-TT-GTAAAATCCCGTA
* ** * *
32715955 AGTAGAAGGTCGCCATCATAAATTAGTAGACTTTAAGATTTGTAAAATCCCGTA
1 AGTAAAAGGTCGTGATCGTAAATTAGTGGAC-TTAAGATTTGTAAAATCCCGTA
*
32716009 AGTAAAAGGTCGTGATTGTAAATTA
1 AGTAAAAGGTCGTGATCGTAAATTA
32716034 ACTAAAGCTT
Statistics
Matches: 269, Mismatches: 64, Indels: 32
0.74 0.18 0.09
Matches are distributed among these distances:
52 4 0.01
53 7 0.03
54 246 0.91
55 9 0.03
56 3 0.01
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.29
Consensus pattern (53 bp):
AGTAAAAGGTCGTGATCGTAAATTAGTGGACTTAAGATTTGTAAAATCCCGTA
Found at i:32716486 original size:54 final size:52
Alignment explanation
Indices: 32716391--32716596 Score: 166
Period size: 54 Copynumber: 3.8 Consensus size: 52
32716381 GTAGATTGTG
* * * * * *
32716391 AGATTCAAAAAATCCTGTAAATAGAAAGTTGTGATCT-TAAATTAGCGAAACACT
1 AGATTCATAAAATCCCGTAAGTAG-AGGTCGTGAT-TGTAAATCAGCGAAACA-T
* * * *
32716445 AGATCCATAAAATCCCGTAAATAGATGGCCGTGATTGTAAATCAGCAGATTACA-
1 AGATTCATAAAATCCCGTAAGTAGA-GGTCGTGATTGTAAATCAGC-GA-AACAT
* * * *
32716499 AGATTCGTAAAATCCCATAAGTAGAAGGTTGTCATTGTAAATCAGC-AAACATT
1 AGATTCATAAAATCCCGTAAGTAG-AGGTCGTGATTGTAAATCAGCGAAACA-T
*
32716552 GAGATTCATAAAATCCTGTAAGTAAGAGGTCGTGATTGTAAATCA
1 -AGATTCATAAAATCCCGTAAGT-AGAGGTCGTGATTGTAAATCA
32716597 ACTGAAGCTT
Statistics
Matches: 122, Mismatches: 21, Indels: 18
0.76 0.13 0.11
Matches are distributed among these distances:
51 3 0.02
52 1 0.01
53 2 0.02
54 108 0.89
55 5 0.04
56 3 0.02
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (52 bp):
AGATTCATAAAATCCCGTAAGTAGAGGTCGTGATTGTAAATCAGCGAAACAT
Found at i:32716486 original size:108 final size:108
Alignment explanation
Indices: 32716391--32716596 Score: 247
Period size: 108 Copynumber: 1.9 Consensus size: 108
32716381 GTAGATTGTG
** * *
32716391 AGATTCAAAAAATCCTGTAAATAGAAAGTTGTGATCT-TAAATTAGCGAAACACT-AGATCCATA
1 AGATTCAAAAAATCCCATAAATAGAAAGTTGTCAT-TGTAAATCAGC-AAACACTGAGATCCATA
32716454 AAATCCCGTAAAT-AGATGGCCGTGATTGTAAATCAGCAGATTACA
64 AAATCCCGTAAATAAGA-GGCCGTGATTGTAAATCAGCAGATTACA
** * * * *
32716499 AGATTCGTAAAATCCCATAAGTAGAAGGTTGTCATTGTAAATCAGCAAACATTGAGATTCATAAA
1 AGATTCAAAAAATCCCATAAATAGAAAGTTGTCATTGTAAATCAGCAAACACTGAGATCCATAAA
* * *
32716564 ATCCTGTAAGTAAGAGGTCGTGATTGTAAATCA
66 ATCCCGTAAATAAGAGGCCGTGATTGTAAATCA
32716597 ACTGAAGCTT
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
107 7 0.09
108 72 0.88
109 3 0.04
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (108 bp):
AGATTCAAAAAATCCCATAAATAGAAAGTTGTCATTGTAAATCAGCAAACACTGAGATCCATAAA
ATCCCGTAAATAAGAGGCCGTGATTGTAAATCAGCAGATTACA
Found at i:32717457 original size:54 final size:54
Alignment explanation
Indices: 32717275--32717532 Score: 207
Period size: 54 Copynumber: 4.8 Consensus size: 54
32717265 TCGTGACCAG
* * * * *
32717275 AAATCAGCGGACCACGACATTCGTAAAATCTTGTAAGAAGAAGGTCGTGATCGT
1 AAATCAGCGGACCACGAGATTCGTAAAATCTAGTAAGTAGAAAGTCATGATCGT
* * ** * * * * *
32717329 AAATTAACAAACCACGAGATCCATAAAATCTCGTAAGTAGAAAATTATGATCGT
1 AAATCAGCGGACCACGAGATTCGTAAAATCTAGTAAGTAGAAAGTCATGATCGT
* * * * * *
32717383 AATTCAACGGGCCACAAGATTCTTAAAATCTAGTAAGTAGAAAGTCATGATCAT
1 AAATCAGCGGACCACGAGATTCGTAAAATCTAGTAAGTAGAAAGTCATGATCGT
* * * * *
32717437 AAATCAGTGGACCAAGAGATTCGTAAAATC-ATGTAAGTA-AAAGGTCTTCATTGT
1 AAATCAGCGGACCACGAGATTCGTAAAATCTA-GTAAGTAGAAA-GTCATGATCGT
** **
32717491 AAATCAGTAGACTGCGAGATTCGTAAAATCTTA-TAAGTAGAA
1 AAATCAGCGGACCACGAGATTCGTAAAATC-TAGTAAGTAGAA
32717533 GATTATCATC
Statistics
Matches: 159, Mismatches: 40, Indels: 9
0.76 0.19 0.04
Matches are distributed among these distances:
53 4 0.03
54 152 0.96
55 2 0.01
56 1 0.01
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.25
Consensus pattern (54 bp):
AAATCAGCGGACCACGAGATTCGTAAAATCTAGTAAGTAGAAAGTCATGATCGT
Found at i:32717548 original size:54 final size:53
Alignment explanation
Indices: 32717399--32717573 Score: 147
Period size: 54 Copynumber: 3.2 Consensus size: 53
32717389 ACGGGCCACA
* * * * *
32717399 AGATTCTTAAAATCTAGTAAGTAGAA-AGTCATGATCATAAATCAGTGGACCAAG
1 AGATTCGTAAAATCTA-TAAGTAGAAGA-TTATCATCATAAATCAGTAGACCGAG
* * * ** * *
32717453 AGATTCGTAAAATCATGTAAGTAAAAGGTCT-TCATTGTAAATCAGTAGACTGCG
1 AGATTCGTAAAATC-TATAAGTAGAAGAT-TATCATCATAAATCAGTAGACCGAG
* * * *
32717507 AGATTCGTAAAATCTTATAAGTAGAAGATTATCATCATAAATTAGCAGGCCGTG
1 AGATTCGTAAAATC-TATAAGTAGAAGATTATCATCATAAATCAGTAGACCGAG
32717561 AGATTCGTAAAAT
1 AGATTCGTAAAAT
32717574 ACCAAAAGTA
Statistics
Matches: 94, Mismatches: 23, Indels: 8
0.75 0.18 0.06
Matches are distributed among these distances:
53 1 0.01
54 92 0.98
55 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.29
Consensus pattern (53 bp):
AGATTCGTAAAATCTATAAGTAGAAGATTATCATCATAAATCAGTAGACCGAG
Found at i:32720735 original size:54 final size:54
Alignment explanation
Indices: 32720653--32720843 Score: 213
Period size: 54 Copynumber: 3.5 Consensus size: 54
32720643 CAATACACCT
* * *
32720653 AGATTCATAAAATCTCAAAATTAGAAGGTTGTGATCGTAAATAAGCGGACCATA
1 AGATTCATAAAATCTCATAAGTAGAAGGTTGTGATCGTAAATAAGCAGACCATA
* * * *
32720707 AGATTCATAAAATCTCATAAGTAGAAGGTTGTGGTCGTAAATTAGTAGACCACA
1 AGATTCATAAAATCTCATAAGTAGAAGGTTGTGATCGTAAATAAGCAGACCATA
* * * * * ** *
32720761 AGATTCGTAAAATCCCGTAAGTAGAAGGTCGTGATCGTAAATCAGCAGACTGTT
1 AGATTCATAAAATCTCATAAGTAGAAGGTTGTGATCGTAAATAAGCAGACCATA
* *
32720815 AGATTCGTAAAATC-CTATAAGTAAAAGGT
1 AGATTCATAAAATCTC-ATAAGTAGAAGGT
32720844 CATGATTGTC
Statistics
Matches: 116, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
53 1 0.01
54 115 0.99
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (54 bp):
AGATTCATAAAATCTCATAAGTAGAAGGTTGTGATCGTAAATAAGCAGACCATA
Found at i:32721186 original size:54 final size:54
Alignment explanation
Indices: 32721121--32721279 Score: 221
Period size: 54 Copynumber: 2.9 Consensus size: 54
32721111 TAAAATCATG
* * *** *
32721121 TAAGTAGAAGGTTGTGATCATAAATCAGTGGATCGTGAGATTCGTAAAATCCCA
1 TAAGTAGAAGGTCGTGATCGTAAATCAAAAGATCGTCAGATTCGTAAAATCCCA
*
32721175 TAAGTAGAAGGTCGTGATCGTAAATCAAAAGATTGTCAGATTCGTAAAATCCCA
1 TAAGTAGAAGGTCGTGATCGTAAATCAAAAGATCGTCAGATTCGTAAAATCCCA
* *
32721229 TAAGTAGAAGGTCGTGATTGTAAATCAAAAGA-CTGTCAGATTCATAAAATC
1 TAAGTAGAAGGTCGTGATCGTAAATCAAAAGATC-GTCAGATTCGTAAAATC
32721280 TCGTAAATAA
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 94 1.00
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.27
Consensus pattern (54 bp):
TAAGTAGAAGGTCGTGATCGTAAATCAAAAGATCGTCAGATTCGTAAAATCCCA
Found at i:32721197 original size:30 final size:30
Alignment explanation
Indices: 32721162--32721252 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
32721152 ATCGTGAGAT
32721162 TCGTAAAATCCCATAAGTAGAAGGTCGTGA
1 TCGTAAAATCCCATAAGTAGAAGGTCGTGA
** *
32721192 TCGT-AAAT--CA-AA--AGATTGTC-AGA
1 TCGTAAAATCCCATAAGTAGAAGGTCGTGA
32721215 TTCGTAAAATCCCATAAGTAGAAGGTCGTGA
1 -TCGTAAAATCCCATAAGTAGAAGGTCGTGA
*
32721246 TTGTAAA
1 TCGTAAA
32721253 TCAAAAGACT
Statistics
Matches: 46, Mismatches: 7, Indels: 16
0.67 0.10 0.23
Matches are distributed among these distances:
23 2 0.04
24 10 0.22
25 4 0.09
26 2 0.04
27 4 0.09
28 2 0.04
29 4 0.09
30 16 0.35
31 2 0.04
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.26
Consensus pattern (30 bp):
TCGTAAAATCCCATAAGTAGAAGGTCGTGA
Found at i:32721297 original size:54 final size:54
Alignment explanation
Indices: 32721158--32721310 Score: 225
Period size: 54 Copynumber: 2.8 Consensus size: 54
32721148 GTGGATCGTG
* *
32721158 AGATTCGTAAAATCCCATAAGTAGAAGGTCGTGATCGTAAATCAAAAGATTGTC
1 AGATTCGTAAAATCCCATAAGTAGAAGGTCGTGATTGTAAATCAAAAGACTGTC
32721212 AGATTCGTAAAATCCCATAAGTAGAAGGTCGTGATTGTAAATCAAAAGACTGTC
1 AGATTCGTAAAATCCCATAAGTAGAAGGTCGTGATTGTAAATCAAAAGACTGTC
* * * * * * *
32721266 AGATTCATAAAATCTCGTAAATAAAATGTCGTGATTGTAAGTCAA
1 AGATTCGTAAAATCCCATAAGTAGAAGGTCGTGATTGTAAATCAA
32721311 CTGAAGCTTT
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (54 bp):
AGATTCGTAAAATCCCATAAGTAGAAGGTCGTGATTGTAAATCAAAAGACTGTC
Found at i:32721547 original size:451 final size:448
Alignment explanation
Indices: 32720500--32721748 Score: 1281
Period size: 451 Copynumber: 2.8 Consensus size: 448
32720490 TTGGGGTTTT
* * * *
32720500 ACAAAGGCAATGTTACAAAATTGATTCCTCCATCCTTCTTCTTTCATGGTCAGTTTTGAGTTCTT
1 ACAAAGACAATGTAACAAAATTGATTCC-CCAT-CATCCTCTTTCATGGTCAGTTTTGAGTTC-T
* * * * * * *
32720565 CCTTAACATGCCTTTATTCTTAATCTCTAGCATCTAACTTGCTTTAAAGGATAGACTGGTTAGTT
63 CCTCAACACGCCTATATTCATCATCTCTAGCATCTAACTTGCTTTAAAGGA-A-AATGGTCAGTT
* * * * * *
32720630 TTGAGTTCTTCCTCAATACACCTAGATTCATAAAATC-TCAAAATTAGAAGGTTGTGATCGTAAA
126 TTGAGTTCTTCCTCAACACGCCTAGATTCGTAAAATCAT-ATAAGTAGAAGGTTGTGATCATAAA
* * * * * *
32720694 TAAGCGGACCATAAGATTCATAAAATCTCATAAGTAGAAGGTTGTGGTCGTAAATTAGTAGACCA
190 TCAGCGGA-C-TGAGATTCATAAAATCTCATAAGTAGAAGGTCGTGATCGTAAATCAGTAGA-CG
* ** * *
32720759 CAAGATTCGTAAAATCCCGTAAGTAGAAGGTCGTGATCGTAAATCAGCAGACTGTTAGATTCGTA
252 CAAGATTCGTAAAATCCCATAAGTAGAAGGTCGTGATCGTAAATCAAAAGACTGTCAGATTCATA
*
32720824 AAATCCTATAAGTAAAAGGTCATGATTGTCAATCAACTGAAGCTTTTCAAAGAGTTCCTTGTTTT
317 AAATCCTATAAGTAAAAGGTCATGATTGTCAATCAACTGAAGCTTTTCAAAGAGTTACTTGTTTT
** * * * * * * *
32720889 TCTGAGTAGATCAATACATTTCAAGCCTTATTTCAGACTTATTGTGAAAAGAACTAGTTTCTACC
382 TCTGAACAGATCAATACATTTCAAGCCTCATTACAAACCTATGGCGAAAAGAACTAGCTTCTACC
32720954 TC
447 TC
* * * * *
32720956 ACAAA-AGTAATATAACAAAATTAATT--CCATTATCCTCCTTTCAAGGTCAGTTTTGAGTT-TC
1 ACAAAGA-CAATGTAACAAAATTGATTCCCCATCATCCT-CTTTCATGGTCAGTTTTGAGTTCTC
* * * * *
32721017 CTCAACACGGCTATATTCATCATCTCTAGCATTTAACTTG-TTCTGAAGGGCAGAATGATCAGTT
64 CTCAACACGCCTATATTCATCATCTCTAGCATCTAACTTGCTT-T-AAAGG-AAAATGGTCAGTT
* * * *
32721081 TTGAGTTCATCCTCAACATGCCTAGATTTGTAAAATCATGTAAGTAGAAGGTTGTGATCATAAAT
126 TTGAGTTCTTCCTCAACACGCCTAGATTCGTAAAATCATATAAGTAGAAGGTTGTGATCATAAAT
* * * ** *
32721146 CAGTGGATCGTGAGATTCGTAAAATCCCATAAGTAGAAGGTCGTGATCGTAAATCAAAAGATTGT
191 CAGCGGA-C-TGAGATTCATAAAATCTCATAAGTAGAAGGTCGTGATCGTAAATCAGTAGA-CG-
*
32721211 C-AGATTCGTAAAATCCCATAAGTAGAAGGTCGTGATTGTAAATCAAAAGACTGTCAGATTCATA
252 CAAGATTCGTAAAATCCCATAAGTAGAAGGTCGTGATCGTAAATCAAAAGACTGTCAGATTCATA
* *
32721275 AAATCTCGTA-AA-TAAAATGTCGTGATTGT-AAGTCAACTGAAGCTTTTCAGAA-AGTTACTT-
317 AAATC-C-TATAAGTAAAAGGTCATGATTGTCAA-TCAACTGAAGCTTTTCA-AAGAGTTACTTG
** *
32721335 TTTTT-T-AACAGATTGATCCATTTCAAGCCTCATTACAAACCTATGGCGAAGAA-AACTAGCTT
378 TTTTTCTGAACAGATCAATACATTTCAAGCCTCATTACAAACCTATGGCGAA-AAGAACTAGCTT
*
32721397 C-AGCTC
442 CTACCTC
* * *
32721403 ACAAAGACAATGTAACAAAATTGATTCCCCTATCATCCATCTTTCATGCTCAATTTTGAATTCAT
1 ACAAAGACAATGTAACAAAATTGATTCCCC-ATCATCC-TCTTTCATGGTCAGTTTTGAGTTC-T
* *
32721468 CCTCAACACCCCTATATTCATCATCTCTAGCATCTAACTTGCTTTAAAGGAAAATAGGTCAATTT
63 CCTCAACACGCCTATATTCATCATCTCTAGCATCTAACTTGCTTTAAAGGAAAAT-GGTCAGTTT
* * * * * * *
32721533 TAAGTTCTTCCTCAACACGTCTAGATCCGTAAAATCATTTAAGTATAATGTTGTAATCATAAATC
127 TGAGTTCTTCCTCAACACGCCTAGATTCGTAAAATCATATAAGTAGAAGGTTGTGATCATAAATC
* * * *
32721598 AGCAGACTACGAGATTCATAAAATCTCGTAAGTAGAAGGTCATGATCATAAATCAGTAGACCGCA
192 AGCGGACT--GAGATTCATAAAATCTCATAAGTAGAAGGTCGTGATCGTAAATCAGTAGA-CGCA
* * *** *** *
32721663 AGA-TCAGTAAAATCCCTTAAGTAGAAGGTTGTGATCGTAAATCAGTGGACCAACAAATTCATAA
254 AGATTC-GTAAAATCCCATAAGTAGAAGGTCGTGATCGTAAATCAAAAGACTGTCAGATTCATAA
*
32721727 AATCCCATAAGTAAAAGGTCAT
318 AATCCTATAAGTAAAAGGTCAT
32721749 CATCGTAAAT
Statistics
Matches: 649, Mismatches: 117, Indels: 59
0.79 0.14 0.07
Matches are distributed among these distances:
447 25 0.04
448 43 0.07
449 7 0.01
450 44 0.07
451 426 0.66
452 54 0.08
453 30 0.05
456 20 0.03
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (448 bp):
ACAAAGACAATGTAACAAAATTGATTCCCCATCATCCTCTTTCATGGTCAGTTTTGAGTTCTCCT
CAACACGCCTATATTCATCATCTCTAGCATCTAACTTGCTTTAAAGGAAAATGGTCAGTTTTGAG
TTCTTCCTCAACACGCCTAGATTCGTAAAATCATATAAGTAGAAGGTTGTGATCATAAATCAGCG
GACTGAGATTCATAAAATCTCATAAGTAGAAGGTCGTGATCGTAAATCAGTAGACGCAAGATTCG
TAAAATCCCATAAGTAGAAGGTCGTGATCGTAAATCAAAAGACTGTCAGATTCATAAAATCCTAT
AAGTAAAAGGTCATGATTGTCAATCAACTGAAGCTTTTCAAAGAGTTACTTGTTTTTCTGAACAG
ATCAATACATTTCAAGCCTCATTACAAACCTATGGCGAAAAGAACTAGCTTCTACCTC
Found at i:32721745 original size:108 final size:108
Alignment explanation
Indices: 32721611--32721816 Score: 286
Period size: 108 Copynumber: 1.9 Consensus size: 108
32721601 AGACTACGAG
* * * * *
32721611 ATTCATAAAATCTCGTAAGTAGAAGGTCATGATCATAAATCAGTAGACCGCAAGATCAGTAAAAT
1 ATTCATAAAATCCCATAAGTAAAAGGTCATCATCATAAATCAGTAGACCGCAAGATCAATAAAAT
* *
32721676 CCCTTAAGTAGAAGGTTGTGATCGTAAATCAGTGGACCAACAA
66 CCCTTAAGTAGAAGATCGTGATCGTAAATCAGTGGACCAACAA
* * ** *
32721719 ATTCATAAAATCCCATAAGTAAAAGGTCATCATCGTAAATCAGTAGATCGTGAGATTAATAAAAT
1 ATTCATAAAATCCCATAAGTAAAAGGTCATCATCATAAATCAGTAGACCGCAAGATCAATAAAAT
* *
32721784 CTCTTAAGTAGAAGATCGTTATCGTAAATCAGT
66 CCCTTAAGTAGAAGATCGTGATCGTAAATCAGT
32721817 AGACAATGTG
Statistics
Matches: 84, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
108 84 1.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (108 bp):
ATTCATAAAATCCCATAAGTAAAAGGTCATCATCATAAATCAGTAGACCGCAAGATCAATAAAAT
CCCTTAAGTAGAAGATCGTGATCGTAAATCAGTGGACCAACAA
Found at i:32721836 original size:54 final size:54
Alignment explanation
Indices: 32721592--32721837 Score: 219
Period size: 54 Copynumber: 4.6 Consensus size: 54
32721582 GTTGTAATCA
* * * * *
32721592 TAAATCAGCAGACTACGAGATTCATAAAATCTCGTAAGTAGAAGGTCATGATCA
1 TAAATCAGTAGACAACGAGATTCATAAAATCCCTTAAGTAGAAGGTCATGATCG
** * **
32721646 TAAATCAGTAGACCGCAAGA-TCAGTAAAATCCCTTAAGTAGAAGGTTGTGATCG
1 TAAATCAGTAGACAACGAGATTCA-TAAAATCCCTTAAGTAGAAGGTCATGATCG
* * * * *
32721700 TAAATCAGTGGACCAAC-AAATTCATAAAATCCCATAAGTAAAAGGTCATCATCG
1 TAAATCAGTAGA-CAACGAGATTCATAAAATCCCTTAAGTAGAAGGTCATGATCG
** * * * * *
32721754 TAAATCAGTAGATC-GTGAGATTAATAAAATCTCTTAAGTAGAAGATCGTTATCG
1 TAAATCAGTAGA-CAACGAGATTCATAAAATCCCTTAAGTAGAAGGTCATGATCG
* * *
32721808 TAAATCAGTAGACAATGTGATTCGTAAAAT
1 TAAATCAGTAGACAACGAGATTCATAAAAT
32721838 ACTAAGGATG
Statistics
Matches: 153, Mismatches: 34, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
53 4 0.03
54 144 0.94
55 5 0.03
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (54 bp):
TAAATCAGTAGACAACGAGATTCATAAAATCCCTTAAGTAGAAGGTCATGATCG
Found at i:32721836 original size:108 final size:107
Alignment explanation
Indices: 32721592--32721837 Score: 276
Period size: 108 Copynumber: 2.3 Consensus size: 107
32721582 GTTGTAATCA
* * * * * *
32721592 TAAATCAGCAGACTACGAGATTCATAAAATCTCGTAAGTAGAAGGTCATGATCATAAATCAGTAG
1 TAAATCAGTAGAC-AAGAGATTCATAAAATCCCATAAGTAAAAGGTCATCATCATAAATCAGTAG
* * *
32721657 ACCGCAAGATCAGTAAAATCCCTTAAGTAGAAGGTTGTGATCG
65 ACCGCAAGATCAATAAAATCCCTTAAGTAGAAGATCGTGATCG
* * * *
32721700 TAAATCAGTGGACCAACAAATTCATAAAATCCCATAAGTAAAAGGTCATCATCGTAAATCAGTAG
1 TAAATCAGTAGA-CAAGAGATTCATAAAATCCCATAAGTAAAAGGTCATCATCATAAATCAGTAG
* ** * * *
32721765 ATCGTGAGATTAATAAAATCTCTTAAGTAGAAGATCGTTATCG
65 ACCGCAAGATCAATAAAATCCCTTAAGTAGAAGATCGTGATCG
* *
32721808 TAAATCAGTAGACAATGTGATTCGTAAAAT
1 TAAATCAGTAGACAA-GAGATTCATAAAAT
32721838 ACTAAGGATG
Statistics
Matches: 112, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
107 3 0.03
108 108 0.96
109 1 0.01
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (107 bp):
TAAATCAGTAGACAAGAGATTCATAAAATCCCATAAGTAAAAGGTCATCATCATAAATCAGTAGA
CCGCAAGATCAATAAAATCCCTTAAGTAGAAGATCGTGATCG
Found at i:32722072 original size:54 final size:54
Alignment explanation
Indices: 32722005--32722126 Score: 127
Period size: 54 Copynumber: 2.3 Consensus size: 54
32721995 TTATTTGCAA
* * *
32722005 GATTTTATGAATCTCCCAGTTTGTTGATTTAAGATCACGACCTTCTACTAATGG
1 GATTTTACGAATCTCCCAGTCTGTTGATTTAAGATCACGACCTTCAACTAATGG
* ** * ** * * * *
32722059 GATTTTACAAATCTTGCTGTCTGTTGATTTTCGTTCATGACCTTCAACTTATGT
1 GATTTTACGAATCTCCCAGTCTGTTGATTTAAGATCACGACCTTCAACTAATGG
32722113 GATTTTACGAATCT
1 GATTTTACGAATCT
32722127 AGGTGTGTTG
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.24, C:0.18, G:0.16, T:0.43
Consensus pattern (54 bp):
GATTTTACGAATCTCCCAGTCTGTTGATTTAAGATCACGACCTTCAACTAATGG
Found at i:32725142 original size:40 final size:39
Alignment explanation
Indices: 32724912--32725135 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 39
32724902 TGAATGATGT
* * * *
32724912 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
32724952 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
32724992 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32725030 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
32725071 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
32725111 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32725136 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
39 34 0.21
40 119 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32725157 original size:119 final size:119
Alignment explanation
Indices: 32724918--32725168 Score: 287
Period size: 119 Copynumber: 2.1 Consensus size: 119
32724908 ATGTCCGGGC
*
32724918 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGTGCGAG
* * ** *
32724983 TTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATTCGGGT
66 TCACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATTCCGGT
* * * *
32725037 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTGTGCG
* * *
32725100 AGTCACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA-TCCGGT
64 AGTCACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAATTCCGGT
* *
32725156 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
32725169 TACGTGATTT
Statistics
Matches: 112, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 81 0.72
120 28 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGTGCGAG
TCACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATTCCGGT
Found at i:32732260 original size:54 final size:54
Alignment explanation
Indices: 32732111--32732286 Score: 151
Period size: 54 Copynumber: 3.3 Consensus size: 54
32732101 CAACACTTTT
* * * * *
32732111 AGATTCGTAAAGTAACGTAAGTAGAA-GTTCGTGATCGTAAATCAA-TGAACCACG
1 AGATTCGTAAAATCATGTAACTAGAAGGTT-GTGATCGTAAATCAACGGAA-CACG
* * * ** *
32732165 TGATTTGTAAAATCTTGTAACTAGAAGGTCAAT-ATTGTAAATCAACGGAACACG
1 AGATTCGTAAAATCATGTAACTAGAAGGT-TGTGATCGTAAATCAACGGAACACG
* * * * *
32732219 AGATTCGTAAAATCATGTAATTAGAAGGTTGTGATCATAAATCAGCGGACCGCG
1 AGATTCGTAAAATCATGTAACTAGAAGGTTGTGATCGTAAATCAACGGAACACG
*
32732273 ATATTCGTAAAATC
1 AGATTCGTAAAATC
32732287 CAAAAAGTAA
Statistics
Matches: 95, Mismatches: 23, Indels: 8
0.75 0.18 0.06
Matches are distributed among these distances:
53 1 0.01
54 88 0.93
55 6 0.06
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.27
Consensus pattern (54 bp):
AGATTCGTAAAATCATGTAACTAGAAGGTTGTGATCGTAAATCAACGGAACACG
Found at i:32732392 original size:54 final size:53
Alignment explanation
Indices: 32732256--32732423 Score: 138
Period size: 54 Copynumber: 3.1 Consensus size: 53
32732246 GTTGTGATCA
* * * * * *
32732256 TAAATCAGCGGACCGCGATATTCGTAAAATCCAAAAAGTAAAAGGTCATGATCCA
1 TAAATCAGCAGACCGCGAGATTCAT-AAATCCAATAAGTAAAAGGTCATAAT-CG
* * * * * *
32732311 TAAATTAGCAGATCGTGAGATTTATAAAGTCCCATAAGTAAAAGGTCATAATTG
1 TAAATCAGCAGACCGCGAGATTCATAAA-TCCAATAAGTAAAAGGTCATAATCG
* * * ** *
32732365 TAAATGAGCTGACCGCGAGATTCATAAAACCTTGTAAGTAAAAGGTCATCATCG
1 TAAATCAGCAGACCGCGAGATTCATAAATCC-AATAAGTAAAAGGTCATAATCG
32732419 TAAAT
1 TAAAT
32732424 TAGAGGACCG
Statistics
Matches: 89, Mismatches: 22, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
53 2 0.02
54 49 0.55
55 38 0.43
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.25
Consensus pattern (53 bp):
TAAATCAGCAGACCGCGAGATTCATAAATCCAATAAGTAAAAGGTCATAATCG
Found at i:32732752 original size:54 final size:54
Alignment explanation
Indices: 32732694--32732826 Score: 122
Period size: 54 Copynumber: 2.5 Consensus size: 54
32732684 CCTAGATTTG
** ** * * *
32732694 TAAAATCACGTAAGTAGAAGGTCGTGATTTTAAATTAGTAGACCACAAGTTTCT
1 TAAAATCACGTAAGTAGAAGGTCGTGATAGTAAATTAACAGACCAAAAGATTCA
* * * * * **
32732748 TAAAAACTCTTAGGTAGAAGGTCATGATAGTAAATTAACAGATTAAAAGATTCA
1 TAAAATCACGTAAGTAGAAGGTCGTGATAGTAAATTAACAGACCAAAAGATTCA
* *
32732802 TAAAATCCCGTTAGTAGAAGGTCGT
1 TAAAATCACGTAAGTAGAAGGTCGT
32732827 TATCATAAAT
Statistics
Matches: 59, Mismatches: 20, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (54 bp):
TAAAATCACGTAAGTAGAAGGTCGTGATAGTAAATTAACAGACCAAAAGATTCA
Found at i:32732861 original size:24 final size:24
Alignment explanation
Indices: 32732829--32732892 Score: 92
Period size: 24 Copynumber: 2.6 Consensus size: 24
32732819 AAGGTCGTTA
**
32732829 TCATAAATCAATGGACTGTGAGAT
1 TCATAAATCAATAAACTGTGAGAT
32732853 TCATAAATCAATAAACTGTGAGAT
1 TCATAAATCAATAAACTGTGAGAT
32732877 TCATAAAATCTAATAA
1 TCAT-AAATC-AATAA
32732893 GAAGAAGGTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 26 0.72
25 5 0.14
26 5 0.14
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.30
Consensus pattern (24 bp):
TCATAAATCAATAAACTGTGAGAT
Found at i:32733238 original size:243 final size:243
Alignment explanation
Indices: 32732935--32733423 Score: 542
Period size: 243 Copynumber: 2.0 Consensus size: 243
32732925 TGATATTTGT
* * * * * *
32732935 AAAATCCCGTAAGTAAAATGTCATTATCGTAAATTAGTAGACTACTAGATTCGTGAAATCTCTTA
1 AAAATCCCGTAAGTAAAATGTCATCATCGTAAATCAGCAAACTACGAGATTCGTGAAATCTCATA
* * * * ** * * * *
32733000 AATACAAGGTTATGACAGTAAATTAGTGGACCGTAAGGTT-TGTAAAATCCCA-TAAGTAAAAGG
66 AATAAAAGATCATGACAGTAAATCAACGAACCCTAAGATTCT-TAAAAT-CCAGAAAGTAAAAGG
* * * *
32733063 TCGTG-TATGTAAATCAACT-AAAGCTCTTTAGAAAGTTCCTTATTTTTTT-AAGTAGATTGATC
129 TCATGAT-TGTAAATAAACTGAAA-CTCTTTAAAAAGTTCCTTATTTTTTTGAA-CAGATTGATC
* **
32733125 CATTTCAAGCCTCATTTCAGATGTATGGTGAGGAGAAATAGCTTCAGCCTCAC
191 AATTTCAAGCCTCATTTCAGATGTATGAAGAGGAGAAATAGCTTCAGCCTCAC
* *
32733178 AAAATCCTGTAAGT-AAATGATCATCATCGTAAATCAGCAAACTGA-GAGATTTGTGAAATCTCA
1 AAAATCCCGTAAGTAAAATG-TCATCATCGTAAATCAGCAAACT-ACGAGATTCGTGAAATCTCA
** ** *
32733241 TATGTAAAAGATCATGATTGTAAATCAACGAACCCTGAGATTCTTAAAATCCAGAAAGTAAAAGG
64 TAAATAAAAGATCATGACAGTAAATCAACGAACCCTAAGATTCTTAAAATCCAGAAAGTAAAAGG
*
32733306 TCATGATTGTAAATAAACTGAAACTTTTTAAAAAGTTCCTTATTTTTTTGAACAGATTGATCAAT
129 TCATGATTGTAAATAAACTGAAACTCTTTAAAAAGTTCCTTATTTTTTTGAACAGATTGATCAAT
* * * * *
32733371 TTGAAGCCTTATTTCAGATGTGTGAAGATGAGAACTAGCTTCAGCCTCAC
194 TTCAAGCCTCATTTCAGATGTATGAAGAGGAGAAATAGCTTCAGCCTCAC
32733421 AAA
1 AAA
32733424 GGCAATGTAA
Statistics
Matches: 203, Mismatches: 36, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
242 8 0.04
243 187 0.92
244 8 0.04
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (243 bp):
AAAATCCCGTAAGTAAAATGTCATCATCGTAAATCAGCAAACTACGAGATTCGTGAAATCTCATA
AATAAAAGATCATGACAGTAAATCAACGAACCCTAAGATTCTTAAAATCCAGAAAGTAAAAGGTC
ATGATTGTAAATAAACTGAAACTCTTTAAAAAGTTCCTTATTTTTTTGAACAGATTGATCAATTT
CAAGCCTCATTTCAGATGTATGAAGAGGAGAAATAGCTTCAGCCTCAC
Found at i:32733774 original size:54 final size:53
Alignment explanation
Indices: 32733673--32733774 Score: 125
Period size: 54 Copynumber: 1.9 Consensus size: 53
32733663 GTAAATTAAT
* * * * *
32733673 GACCATTGTATTCATAAAATCCATTATTAGAAGGTCGTTATCGTAAATCTGTG
1 GACCATTGTATTCATAAAATCCATAAGTAAAAGGTCGTCATCATAAATCTGTG
*
32733726 GACCA-TGTGATTCGTAAAATCGCATAAGTAAAAGGTCGTCATCATAAAT
1 GACCATTGT-ATTCATAAAATC-CATAAGTAAAAGGTCGTCATCATAAAT
32733775 TGGCAGATCG
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
52 3 0.07
53 16 0.39
54 22 0.54
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (53 bp):
GACCATTGTATTCATAAAATCCATAAGTAAAAGGTCGTCATCATAAATCTGTG
Found at i:32734170 original size:54 final size:53
Alignment explanation
Indices: 32734112--32734286 Score: 147
Period size: 54 Copynumber: 3.2 Consensus size: 53
32734102 TAAAAGGATG
*
32734112 TGATCGTAAATCAGCAGATCGCGAGATTAGTAATATCCCGTAAATAGGAGGTCA
1 TGATCGTAAATCAGCAGA-CGCGAGATTAGTAATATCCCGTAAATAGAAGGTCA
* * ** * * ** * *
32734166 TGATCGTAAATTAACAGACTATGAGATTCGTAAGATCTTGTAAAAAGAAGGTCT
1 TGATCGTAAATCAGCAGAC-GCGAGATTAGTAATATCCCGTAAATAGAAGGTCA
* * * * *
32734220 TGATCGTAAATCAGC-GAACCGCGAGATTTGT-ATATCCCCATAAGTAAAAGGTCG
1 TGATCGTAAATCAGCAG-A-CGCGAGATTAGTAATAT-CCCGTAAATAGAAGGTCA
32734274 TGATCGTAAATCA
1 TGATCGTAAATCA
32734287 ACATCCCATG
Statistics
Matches: 93, Mismatches: 24, Indels: 8
0.74 0.19 0.06
Matches are distributed among these distances:
53 5 0.05
54 87 0.94
55 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (53 bp):
TGATCGTAAATCAGCAGACGCGAGATTAGTAATATCCCGTAAATAGAAGGTCA
Found at i:32734317 original size:108 final size:108
Alignment explanation
Indices: 32734081--32734347 Score: 258
Period size: 108 Copynumber: 2.5 Consensus size: 108
32734071 CAACATGCCT
* * * * *
32734081 AGATTCGTAAAATCACGTAAGTAAAAGGATGTGATCGTAAATCAGC-AGATCGCGAGATTAGTAA
1 AGATTCGTAAGATCTCGTAAATAAAAGGTTGTGATCGTAAATCAGCGA-ACCGCGAGATTAGTAA
* ** * *
32734145 TATCCCGTAAATAGGAGGTCATGATCGTAAATTAACAGACTATG
65 TATCCCATAAATAAAAGGTCATGATCGTAAATCAACAGACCATG
* *
32734189 AGATTCGTAAGATCTTGTAAA-AAGAAGGTCT-TGATCGTAAATCAGCGAACCGCGAGATTTGT-
1 AGATTCGTAAGATCTCGTAAATAA-AAGGT-TGTGATCGTAAATCAGCGAACCGCGAGATTAGTA
* * **
32734251 ATATCCCCATAAGTAAAAGGTCGTGATCGTAAATCAACATCCCATG
64 ATAT-CCCATAAATAAAAGGTCATGATCGTAAATCAACAGACCATG
* * * *
32734297 AGATTCGT-TGAAT-TCCGTAAATAAAAGGTTGTTACCATAAATCAGCGAACC
1 AGATTCGTAAG-ATCT-CGTAAATAAAAGGTTGTGATCGTAAATCAGCGAACC
32734348 CTAAGATTCA
Statistics
Matches: 130, Mismatches: 21, Indels: 16
0.78 0.13 0.10
Matches are distributed among these distances:
107 9 0.07
108 117 0.90
109 4 0.03
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (108 bp):
AGATTCGTAAGATCTCGTAAATAAAAGGTTGTGATCGTAAATCAGCGAACCGCGAGATTAGTAAT
ATCCCATAAATAAAAGGTCATGATCGTAAATCAACAGACCATG
Found at i:32734819 original size:54 final size:54
Alignment explanation
Indices: 32734726--32734873 Score: 154
Period size: 54 Copynumber: 2.7 Consensus size: 54
32734716 ACATGCCTAG
* * * * *
32734726 ATTCGTAAAATCACGTAATTAGAAGGTTGTGATTATAAATTAACAGACCGCGAA
1 ATTCATAAAATCCCGTAAGTAGAAGGTTATGATTATAAATTAACAGACCACGAA
* * * * * *
32734780 ATTCAT-AAATCCCTGTAAGTAGAAGGTTATTATTTTAAATTAGCGGATCACGAG
1 ATTCATAAAATCCC-GTAAGTAGAAGGTTATGATTATAAATTAACAGACCACGAA
* * *
32734834 ATTCATAAAATCCCGTAAGTAAAAGGTTGTGATTGTAAAT
1 ATTCATAAAATCCCGTAAGTAGAAGGTTATGATTATAAAT
32734874 CACATAAATA
Statistics
Matches: 77, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
53 6 0.08
54 64 0.83
55 7 0.09
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (54 bp):
ATTCATAAAATCCCGTAAGTAGAAGGTTATGATTATAAATTAACAGACCACGAA
Found at i:32735456 original size:54 final size:54
Alignment explanation
Indices: 32735314--32735545 Score: 173
Period size: 54 Copynumber: 4.3 Consensus size: 54
32735304 TAACACACCT
* * ** * *
32735314 AGATTCGTAAAAGCAC-GTAAGTAGAAGGTTGTGATCGTAAATAAGCAGACTGCA
1 AGATTCGTAAAATC-CTGTTAGTAGAAGGTCATGATCGTAAATTAGCAGACCGCA
* ** * *
32735368 AGGTTTATAAAATCCTG-TAGGTAGAAGGTAATGATCGTAAATTAGCAGACCGCG
1 AGATTCGTAAAATCCTGTTA-GTAGAAGGTCATGATCGTAAATTAGCAGACCGCA
* * * ** * * * *
32735422 ATATTTGTAAAATCCTGTTAGTAGAAGATCATGATTTTAAAATTAGCAAATCACG
1 AGATTCGTAAAATCCTGTTAGTAGAAGGTCATGATCGT-AAATTAGCAGACCGCA
* * * * * *
32735477 AGATTCGTAAAAT-CTCGTAAGTAGAAGGTCGTGATCATAAATCAACGGACCGCA
1 AGATTCGTAAAATCCT-GTTAGTAGAAGGTCATGATCGTAAATTAGCAGACCGCA
32735531 AGATTCGTAAAATCC
1 AGATTCGTAAAATCC
32735546 AAAAAGTAAA
Statistics
Matches: 138, Mismatches: 34, Indels: 11
0.75 0.19 0.06
Matches are distributed among these distances:
53 2 0.01
54 92 0.67
55 44 0.32
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (54 bp):
AGATTCGTAAAATCCTGTTAGTAGAAGGTCATGATCGTAAATTAGCAGACCGCA
Found at i:32735490 original size:55 final size:54
Alignment explanation
Indices: 32735375--32735503 Score: 127
Period size: 55 Copynumber: 2.4 Consensus size: 54
32735365 GCAAGGTTTA
* * * * *
32735375 TAAAATCCTG-TAGGTAGAAGGTAATGATCGTAAATTAGCAGACCGCGATATTTG
1 TAAAATCCTGTTA-GTAGAAGATAATGATCGTAAATTAGCAAACCACGAGATTCG
* ** *
32735429 TAAAATCCTGTTAGTAGAAGATCATGATTTTAAAATTAGCAAATCACGAGATTCG
1 TAAAATCCTGTTAGTAGAAGATAATGATCGT-AAATTAGCAAACCACGAGATTCG
*
32735484 TAAAAT-CTCGTAAGTAGAAG
1 TAAAATCCT-GTTAGTAGAAG
32735504 GTCGTGATCA
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
54 26 0.42
55 36 0.58
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (54 bp):
TAAAATCCTGTTAGTAGAAGATAATGATCGTAAATTAGCAAACCACGAGATTCG
Found at i:32736547 original size:54 final size:54
Alignment explanation
Indices: 32736338--32736552 Score: 178
Period size: 54 Copynumber: 4.0 Consensus size: 54
32736328 GTAAAAGCAC
* ** * **
32736338 GTAACTAGAAGGTCATGATCGTAAATCAGCAAACCACGAGATTTATAAAATCCC
1 GTAAGTAGAAGGTCATGATCGTAAATCAGCAAACCGTGAGATTCATAAAATCTT
* * *** * * **
32736392 ATAGGTAGAAGGTCATGATCGTAAATCAGTGGACTGTGCGATTTGTAAAATCTT
1 GTAAGTAGAAGGTCATGATCGTAAATCAGCAAACCGTGAGATTCATAAAATCTT
* * * ** * * *
32736446 GTTAGTAGAAGATTATGATTTTAAAATTATCAAATCGTGAGATTCATAAAATCTT
1 GTAAGTAGAAGGTCATGATCGT-AAATCAGCAAACCGTGAGATTCATAAAATCTT
* * **
32736501 GTAAGTAGAAGGTCGTGATCGTAAATTAGCGGACCGTGAGATTCATAAAATC
1 GTAAGTAGAAGGTCATGATCGTAAATCAGCAAACCGTGAGATTCATAAAATC
32736553 CAGAAAGTAA
Statistics
Matches: 120, Mismatches: 40, Indels: 2
0.74 0.25 0.01
Matches are distributed among these distances:
54 82 0.68
55 38 0.32
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (54 bp):
GTAAGTAGAAGGTCATGATCGTAAATCAGCAAACCGTGAGATTCATAAAATCTT
Found at i:32736824 original size:511 final size:504
Alignment explanation
Indices: 32734968--32736932 Score: 1691
Period size: 511 Copynumber: 3.9 Consensus size: 504
32734958 AGTAGATCGT
* * * * * * * * * * *
32734968 GAGATTCGTAAAATCTCGTAAGTAAAAGGTTGTCATTAAAAATCAACGAACCATGAAATTCGTAT
1 GAGATTCGTAAAATCTCGTAAGTAGAAGGTCGTGATCATAAATCAGCGGACCGTGAGATTCATAA
* * * * * * * *
32735033 AGTCCTGGAAGTAAAAGGTCGTGATCATAAATCAACTAAAGTTTTTCAGAAAGTTCCTTATTTTT
66 AATCCAGAAAGTAAAATGTCATGAT--TAAA-AAACTAAAGTTTTTCAGAAAGTTTCTTGTTTTT
* * * * *
32735098 CTAAGTAG-TTCGATCTATTTCAAGCCTCATTTCATATGTATGGTGTTGAGAACTAGTTTCATA-
128 CTAAGCAGATT-GATCCATTTCAAGCCTCATTTCAAATGTATGGTATTGAGAACTAGCTTCA-AC
* * *
32735161 CTCACAAA-ACAATTTAACAAAATCGATATACCTCTATCCTCTTTTCAGGGTTAGTTTGAGTTCT
191 CTCACAAAGACAATGTAACAAAATTGAT-T-CCTCTATCCTCTTTTCAAGGTTAGTTTGAGTTCT
* * * * * *
32735225 TCCTCAACACGCTTATATCCATTATCTCTAG-TAATC-AACTTGCTTTGAAGGGCA-AAGGGGTC
254 TCCTCAACACGCCTATATTCATCATCTCTAGCT--TCTAACTTGCTCTGAAGGGTAGAAGAGGTC
* * **
32735287 AGTTTTGAGTTATTCCTTAACACACCTAGATTCGTAAAAGCACGTAAGTAGAAGGTTGTGATCGT
317 AGTTTTGAGTTATTCCTCAACACGCCTAGATTCGTAAAAGCACGTAAGTAGAAGGTCATGATCGT
* * ** * * * * * * **
32735352 AAATAAGCAGACTGCAAGGTTTATAAAATCCTGTAGGTAGAAGGTAATGATCGTAAATTAGCAGA
382 AAATCAGCAAACCACGAGATTTATAAAATCCTATAAGTAGAAGGTCATGATCGTAAATCAGTGGA
* * * *
32735417 CCGCGATATTTGTAAAATCCTGTTAGTAGAAGATCATGATTTTAAAATTAGCAAATCAC
447 CAG-GAGATTTGTAAAATCTTGTTAGTAGAAGATCATGATTTTAAAATTACCAAATCAC
* ** *
32735476 GAGATTCGTAAAATCTCGTAAGTAGAAGGTCGTGATCATAAATCAACGGACCGCAAGATTCGTAA
1 GAGATTCGTAAAATCTCGTAAGTAGAAGGTCGTGATCATAAATCAGCGGACCGTGAGATTCATAA
* * * * *
32735541 AATCCAAAAAGTAAAATGTCATGATTATAAATCAATTGAAA-CTTTTAAGAAA-TTTCATTGTTC
66 AATCCAGAAAGTAAAATGTCATGATTA-AAA--AACT-AAAGTTTTTCAGAAAGTTTC-TTGTTT
* * * * * *
32735604 TTCTGAGCAGATTGATCCATTACAAACCTCATTTCAAATGTATGGTGTTGAGAACTAGCTTTAGC
126 TTCTAAGCAGATTGATCCATTTCAAGCCTCATTTCAAATGTATGGTATTGAGAACTAGCTTCAAC
* * *
32735669 CTCACAAAGACAATGTAACAAAATTTATTCCTCTATCCTCCTTCTTTCAAGGTCAATTTTGAGTT
191 CTCACAAAGACAATGTAACAAAATTGATTCCTCTATCCT-C-T-TTTCAAGGT-TAGTTTGAGTT
* * **
32735734 CTTCCTCAACATGCCTATATTCATCATCTCTAGCTTTTAACTTGCTCTGAATAGTAGAA-AGGTC
252 CTTCCTCAACACGCCTATATTCATCATCTCTAGCTTCTAACTTGCTCTGAAGGGTAGAAGAGGTC
* * * * * *
32735798 AGTTTTGAGTCATTCCTCAACATGCCTAGATTCGTATAACCAAC-TAAGTTGAAGGTCGTGATCG
317 AGTTTTGAGTTATTCCTCAACACGCCTAGATTCGTAAAAGC-ACGTAAGTAGAAGGTCATGATCG
* * * * *
32735862 TAAATCAATG-AAA-TA-GAAGATTCATGAAATCCTATAAGTA-AATGGTCGTGATCATAAATCA
381 TAAATC-A-GCAAACCACG-AGATTTATAAAATCCTATAAGTAGAA-GGTCATGATCGTAAATCA
* * * * * * * ** * * *
32735923 GTGAACCAGGAGATTCGTAAAATCTCGTAAATA-AAAAGTCATTATCGT-AAATCACCAGACCAC
442 GTGGA-CAGGAGATTTGTAAAATCTTGTTAGTAGAAGA-TCATGATTTTAAAATTACCAAATCAC
* ** * * * * * ** * ** *
32735986 GAGATTCGTAAAATCTCATATTTTGAAGGTTGTCATAAAAAATCAGTAGACCATGAGATTTGTTT
1 GAGATTCGTAAAATCTCGTAAGTAGAAGGTCGTGATCATAAATCAGCGGACCGTGAGA-TTCATA
* * * *
32736051 AGACCCAG-AAGTAAAAGGTCATGA-T----AACTAAAGTTTTTCATAAAGTTTCTTGTTTTTCT
65 AAATCCAGAAAGTAAAATGTCATGATTAAAAAACTAAAGTTTTTCAGAAAGTTTCTTGTTTTTCT
** * * * * ** * * * *
32736110 AAGCAGATCAATGCATTTCAAGCCTCATTTCAGACGTTTGG-AGAAGAGAACTAAC-TCAGCATT
130 AAGCAGATTGATCCATTTCAAGCCTCATTTCAAATGTATGGTA-TTGAGAACTAGCTTCAACCTC
* * * * *
32736173 ATAAAGGCAATATAACAAAATTGATACCTCTATCCTCTTTTCAAGGTTAGTTTGAGTTCTTCCTT
194 ACAAAGACAATGTAACAAAATTGATTCCTCTATCCTCTTTTCAAGGTTAGTTTGAGTTCTTCCTC
* * * ** * * *
32736238 AGCATGCCTATATTCATCATCTTTAGAATCTAGCTTGCTCTGAAGGG-AAAAGACGTCAGTTTTG
259 AACACGCCTATATTCATCATCTCTAGCTTCTAACTTGCTCTGAAGGGTAGAAGAGGTCAGTTTTG
* * *
32736302 AGTTCTTCCTCAACACGCCTAGATTTGTAAAAGCACGTAACTAGAAGGTCATGATCGTAAATCAG
324 AGTTATTCCTCAACACGCCTAGATTCGTAAAAGCACGTAAGTAGAAGGTCATGATCGTAAATCAG
* * * *
32736367 CAAACCACGAGATTTATAAAATCCCATAGGTAGAAGGTCATGATCGTAAATCAGTGGACTGTGCG
389 CAAACCACGAGATTTATAAAATCCTATAAGTAGAAGGTCATGATCGTAAATCAGTGGACAG-GAG
* * **
32736432 ATTTGTAAAATCTTGTTAGTAGAAGATTATGATTTTAAAATTATCAAATCGT
453 ATTTGTAAAATCTTGTTAGTAGAAGATCATGATTTTAAAATTACCAAATCAC
* * * *
32736484 GAGATTCATAAAATCTTGTAAGTAGAAGGTCGTGATCGTAAATTAGCGGACCGTGAGATTCATAA
1 GAGATTCGTAAAATCTCGTAAGTAGAAGGTCGTGATCATAAATCAGCGGACCGTGAGATTCATAA
* *
32736549 AATCCAGAAAGTAAAATGTCATGATTTAAAAAAAAACTAAA-TGTTTTGAGAAAGTTTCTCGTTT
66 AATCCAGAAAGTAAAATGTCATGA-TT---AAAAAACTAAAGT-TTTTCAGAAAGTTTCTTGTTT
* * ** * * *
32736613 TTCTTAGTAGATTGATTTATTTGAAGCCTCATTTCAAATGTATGGTATTGAAAACTAGCTCCAAC
126 TTCTAAGCAGATTGATCCATTTCAAGCCTCATTTCAAATGTATGGTATTGAGAACTAGCTTCAAC
* * *
32736678 CTCACAAAGAAAATGTAACAAAATTGATTCTTCTATCCTCCATCTTTCAAGGTTAATTTTGAGTT
191 CTCACAAAGACAATGTAACAAAATTGATTCCTCTATCCT-C-T-TTTCAAGGTT-AGTTTGAGTT
* * * *
32736743 CTT-CTTAACACGCCTATATTCATCAGCTCTAGCTTCTAACTTGCTCTAAAGGGTAGAA-ATGTC
252 CTTCCTCAACACGCCTATATTCATCATCTCTAGCTTCTAACTTGCTCTGAAGGGTAGAAGAGGTC
* * * * * * * *
32736806 AATTATGAGTTATTCCTCAATATGCCTAGATTTGTAAAATCAAGTAAGTTGAAGGTCATGATCGT
317 AGTTTTGAGTTATTCCTCAACACGCCTAGATTCGTAAAAGCACGTAAGTAGAAGGTCATGATCGT
*** * * * * * *
32736871 AAATCAGTGGACCAAGAGATTTGTAAAATCCTGTAAGTAAAAGGTCGTTATCGTAAATCAGT
382 AAATCAGCAAACCACGAGATTTATAAAATCCTATAAGTAGAAGGTCATGATCGTAAATCAGT
32736933 AGACCACAGG
Statistics
Matches: 1143, Mismatches: 261, Indels: 103
0.76 0.17 0.07
Matches are distributed among these distances:
495 1 0.00
496 11 0.01
497 190 0.17
498 82 0.07
499 1 0.00
500 2 0.00
501 39 0.03
502 61 0.05
503 4 0.00
506 3 0.00
507 83 0.07
508 186 0.16
509 24 0.02
510 85 0.07
511 345 0.30
512 25 0.02
513 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (504 bp):
GAGATTCGTAAAATCTCGTAAGTAGAAGGTCGTGATCATAAATCAGCGGACCGTGAGATTCATAA
AATCCAGAAAGTAAAATGTCATGATTAAAAAACTAAAGTTTTTCAGAAAGTTTCTTGTTTTTCTA
AGCAGATTGATCCATTTCAAGCCTCATTTCAAATGTATGGTATTGAGAACTAGCTTCAACCTCAC
AAAGACAATGTAACAAAATTGATTCCTCTATCCTCTTTTCAAGGTTAGTTTGAGTTCTTCCTCAA
CACGCCTATATTCATCATCTCTAGCTTCTAACTTGCTCTGAAGGGTAGAAGAGGTCAGTTTTGAG
TTATTCCTCAACACGCCTAGATTCGTAAAAGCACGTAAGTAGAAGGTCATGATCGTAAATCAGCA
AACCACGAGATTTATAAAATCCTATAAGTAGAAGGTCATGATCGTAAATCAGTGGACAGGAGATT
TGTAAAATCTTGTTAGTAGAAGATCATGATTTTAAAATTACCAAATCAC
Found at i:32736915 original size:54 final size:55
Alignment explanation
Indices: 32736833--32736954 Score: 158
Period size: 54 Copynumber: 2.3 Consensus size: 55
32736823 CAATATGCCT
** *
32736833 AGATTTGTAAAATCAAGTAAGTTGAAGGTCATGATCGTAAATCAGTGGACCA-AG
1 AGATTTGTAAAATCAAGTAAGTAAAAGGTCATGATCGTAAATCAGTAGACCACAG
** * *
32736887 AGATTTGTAAAATCCTGTAAGTAAAAGGTCGTTATCGTAAATCAGTAGACCACAG
1 AGATTTGTAAAATCAAGTAAGTAAAAGGTCATGATCGTAAATCAGTAGACCACAG
*
32736942 -GATTCGTAAAATC
1 AGATTTGTAAAATC
32736955 TCATATTTAG
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
54 57 0.97
55 2 0.03
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.27
Consensus pattern (55 bp):
AGATTTGTAAAATCAAGTAAGTAAAAGGTCATGATCGTAAATCAGTAGACCACAG
Found at i:32737250 original size:255 final size:252
Alignment explanation
Indices: 32736749--32737260 Score: 552
Period size: 255 Copynumber: 2.0 Consensus size: 252
32736739 AGTTCTTCTT
* *
32736749 AACACGCCTATATTCATCAGCTCTAGCTTCTAACTTGCTCTAAAGGGTAGAAATGTCAATTATGA
1 AACACGCCTATATTCATCAGCTCTAGCTTCTAACTTACTCTAAAGGGTAGAAAGGTCAATTATGA
* ** * *
32736814 GTTATTCCTCAATATGCCTAGATTTGTAAAATCAAGTAAGTTGAAGGTCATGATCGTAAATCAGT
66 GTTATTCCTCAACACACCTAGATTTGTAAAATCAAGTAAGTAGAAAGTCATGATCGTAAATCAGT
*** * * * *
32736879 GGACCAAGAGATTTGTAAAATCCTGTAAGTAAAAGGTCGTTATCGTAAATCAGTAGACCACAGGA
131 GGACCAAGAGATTCAAAAAATCCTATAAGTAAAAGGTCATGATAGTAAATCAGTAGA-CACAGGA
** * *
32736944 TTCGTAAAATCTCATATTTAGAAGGTTGTCATAAAAAATCAGCAAACCATGAGATTTGTA
195 TTCGTAAAATCTCATAAGTAAAAGGTTATCATAAAAAATCAG--AACCATGAGATTTGTA
* * * * * *
32737004 AACATGCCTATATTCATCATCTCTAGCTTCTAACTTACTTTGAAGGGTAGAAAGGTCAGTTTTGA
1 AACACGCCTATATTCATCAGCTCTAGCTTCTAACTTACTCTAAAGGGTAGAAAGGTCAATTATGA
* *
32737069 GTTATTCCTCAACACACCTAGTTTTGTAAAATCACA-TAAGTAGAAAGTCGTGATCGTAAATCAG
66 GTTATTCCTCAACACACCTAGATTTGTAAAATCA-AGTAAGTAGAAAGTCATGATCGTAAATCAG
* ** * *
32737133 TGGACCGCA-AGATTCAAAAAATCCTATTTGTAAAAGGTCATGATAGTTAATTAGT-GA-ATC-G
130 TGGACC-AAGAGATTCAAAAAATCCTATAAGTAAAAGGTCATGATAGTAAATCAGTAGACA-CAG
* **
32737194 TGAGATCTGTAAAATCTTGTAAGTAAAAGGCCGTTATCATAAATAAAT-AG-ACCATGAGATTTG
193 -GA-TTC-GTAAAATCTCATAAGTAAAA-G--GTTATCATAAA-AAATCAGAACCATGAGATTTG
32737257 TA
251 TA
32737259 AA
1 AA
32737261 ATCTCGTAAG
Statistics
Matches: 213, Mismatches: 34, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
252 2 0.01
253 3 0.01
254 4 0.02
255 185 0.87
256 3 0.01
258 12 0.06
259 4 0.02
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (252 bp):
AACACGCCTATATTCATCAGCTCTAGCTTCTAACTTACTCTAAAGGGTAGAAAGGTCAATTATGA
GTTATTCCTCAACACACCTAGATTTGTAAAATCAAGTAAGTAGAAAGTCATGATCGTAAATCAGT
GGACCAAGAGATTCAAAAAATCCTATAAGTAAAAGGTCATGATAGTAAATCAGTAGACACAGGAT
TCGTAAAATCTCATAAGTAAAAGGTTATCATAAAAAATCAGAACCATGAGATTTGTA
Found at i:32737306 original size:54 final size:54
Alignment explanation
Indices: 32737192--32737313 Score: 138
Period size: 54 Copynumber: 2.3 Consensus size: 54
32737182 ATTAGTGAAT
* * * *
32737192 CGTGAGATCTGTAAAATCTTGTAAGTAAAAGGCCGTTATCATAAATAAATAGAC
1 CGTGAGATTTGTAAAATCTCGTAAGTAAAAGGCCGTCATCAAAAATAAATAGAC
* * ** * *
32737246 CATGAGATTTGTAAAATCTCGTAAGTAGAAGGTTGTCAT-AGAAAATCAATGGAC
1 CGTGAGATTTGTAAAATCTCGTAAGTAAAAGGCCGTCATCA-AAAATAAATAGAC
32737300 CGTGAGATTTGTAA
1 CGTGAGATTTGTAA
32737314 TGTCCTAGAA
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 1 0.02
54 55 0.98
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.29
Consensus pattern (54 bp):
CGTGAGATTTGTAAAATCTCGTAAGTAAAAGGCCGTCATCAAAAATAAATAGAC
Found at i:32738532 original size:54 final size:54
Alignment explanation
Indices: 32738447--32738605 Score: 133
Period size: 54 Copynumber: 3.0 Consensus size: 54
32738437 GTAAAATCAC
* * * * * * *
32738447 GTAAGTAGAAGGTCGTAATCTTGAATCAACAGATCAAAAGATTTGTAATATCTT
1 GTAAATAGGAGGTCGTGATCGTAAATTAACAGATCATAAGATTTGTAATATCTT
* * * **
32738501 GTAAATAGGAGGTCGTGATCGTAAATTAACAGACCGTGAGATTTGTAAGGTCTT
1 GTAAATAGGAGGTCGTGATCGTAAATTAACAGATCATAAGATTTGTAATATCTT
* ** ***
32738555 GTTAA-AGGAAGGTTTTGATCGTAAATTAGTGGATCATAAGATTTGT-ATATC
1 GTAAATAGG-AGGTCGTGATCGTAAATTAACAGATCATAAGATTTGTAATATC
32738606 CCCATAAATA
Statistics
Matches: 81, Mismatches: 23, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
53 6 0.07
54 75 0.93
ACGTcount: A:0.35, C:0.09, G:0.23, T:0.33
Consensus pattern (54 bp):
GTAAATAGGAGGTCGTGATCGTAAATTAACAGATCATAAGATTTGTAATATCTT
Found at i:32738725 original size:54 final size:54
Alignment explanation
Indices: 32738667--32738773 Score: 124
Period size: 54 Copynumber: 2.0 Consensus size: 54
32738657 AATCCTGTAA
** **
32738667 GTAAAAAGTCATTATCATAAATCAGTGGACCGTGAGATTCATAAAATCTCATAT
1 GTAAAAAGTCATTATCATAAATCAGCAGACCACGAGATTCATAAAATCTCATAT
* * ** **
32738721 GTAAAAGGTCGTTATTGTAAATCAGCAGACCACGAGATTTGTAAAATCTCATA
1 GTAAAAAGTCATTATCATAAATCAGCAGACCACGAGATTCATAAAATCTCATA
32738774 AGTAGAAGGT
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (54 bp):
GTAAAAAGTCATTATCATAAATCAGCAGACCACGAGATTCATAAAATCTCATAT
Found at i:32738759 original size:108 final size:108
Alignment explanation
Indices: 32738647--32738852 Score: 236
Period size: 108 Copynumber: 1.9 Consensus size: 108
32738637 GTGTACCGTT
* * * * **
32738647 AGATTTGTAGAATC-CTGTAAGTAAAAAGTCATTATC-ATAAATCAGTGGACCGTGAGATTCATA
1 AGATTTGTAAAATCTC-ATAAGTAAAAAGTCATCATCGA-AAAACAACGGACCGTGAGATTCATA
* * * *
32738710 AAATCTCATATGTAAAAGGTCGTTATTGTAAATCAGCAGACCACG
64 AAATCCCAGAAGTAAAAGGTCGTGATTGTAAATCAGCAGACCACG
* * * *
32738755 AGATTTGTAAAATCTCATAAGTAGAAGGTCGTCATCGAAAAACAACGGACTGTGAGATTCATAAA
1 AGATTTGTAAAATCTCATAAGTAAAAAGTCATCATCGAAAAACAACGGACCGTGAGATTCATAAA
* *
32738820 GTCCCAGAAGTAAGAGGTCGTGATTGTAAATCA
66 ATCCCAGAAGTAAAAGGTCGTGATTGTAAATCA
32738853 AATGAATTTT
Statistics
Matches: 80, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
108 78 0.98
109 2 0.03
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (108 bp):
AGATTTGTAAAATCTCATAAGTAAAAAGTCATCATCGAAAAACAACGGACCGTGAGATTCATAAA
ATCCCAGAAGTAAAAGGTCGTGATTGTAAATCAGCAGACCACG
Found at i:32740220 original size:442 final size:450
Alignment explanation
Indices: 32739259--32740227 Score: 1072
Period size: 452 Copynumber: 2.2 Consensus size: 450
32739249 ACAGACCGTG
* * * * * * * * * *
32739259 AGATCCGT-AAATCAAATAAATAGAAGTTCATGATCATAAATCAGTATACCGT-GAGATTAATAA
1 AGATTCGTAAAATCACATAAGTAGAAGGTCGTGATCGTAAATCAGCAAACC-TCAAGATTCATAA
* * * *
32739322 AATCCTATAAGTAAAAAATCGATACCATAAATTAGCAGACCATGAGATTCGTAAAATCTCGTAAG
65 AATCCTATAAGTAAAAAATCGATACCATAAATCAGCAGACCACGAGATTCGTAAAATATCGCAAG
* *
32739387 TAGAAGGTCATCATTGAAAATCAGTAGACTGTGAAATTTATAAAGTCCCGAAAGTAAAAGATCGT
130 TAGAAGGTCATCATTGAAAATCAGCAGACTGTGAAATTCATAAAGTCCCGAAAGTAAAAGATCGT
* * *
32739452 GATTGTAAATCAACTGAAGTTTTTCAGAAAGCTCTTTATTTTTCTGAGCAGATCGATCTACTTCA
195 GATTGTAAATCAACTAAAGTTTTTCAGAAAGCTCTCTATTTTTCTGAGCAAATCGATCTACTTCA
* ** ** * *
32739517 AGCCTCATTTCATACGTATGGTGTAGAGAACTAGCTTCAGCCTCACAAAGGCAATAGAACAAAAT
260 AGCCTCATTTCAAACACATGGTAAAGAAAACTAACTTCAGCCTCACAAAGGCAATAGAACAAAAT
* * * **
32739582 TTATACCGCTATCTTCCTTTCAAGGTCAGTTTAAGTTCTTCATCAACATGCCTATATTCATCACC
325 TGATACAGCTATCTTCCTTTCAAGG-CAG-TTAAGTTCTTCAGCAACACACCTATATTCATCACC
**
32739647 TCTAGCATCTAACTTACTCTGAAGGGCAAAGAGGTCAATTTTGAGTTATTCCTCAACACACCT
388 TCTAGCATCTAACTTACTCTGAAGGAAAAAGAGGTCAATTTTGAGTTATTCCTCAACACACCT
** *
32739710 AGATTCGTAAAATCACATAAGTAGAAGGTCGTGATCGTAAATCAGCAAACCTTGAGATTCACAAA
1 AGATTCGTAAAATCACATAAGTAGAAGGTCGTGATCGTAAATCAGCAAACCTCAAGATTCATAAA
* ** * *
32739775 ATCCTGTAAGTAAAAGGTC-ATTATCATAAATCATCAGACCACGAGA-TCTGTAAAATATCGCAA
66 ATCCTATAAGTAAAAAATCGA-TACCATAAATCAGCAGACCACGAGATTC-GTAAAATATCGCAA
* * * * *
32739838 GTTGAAGGTCGTCATTGAAAATC-GACAGACTGTGAGATTCATAAAGTCCCGAAAGTAAAAGGTT
129 GTAGAAGGTCATCATTGAAAATCAG-CAGACTGTGAAATTCATAAAGTCCCGAAAGTAAAAGATC
* ** * * * **
32739902 GTGATTGTAAATCAGCTAAAGTTTTTTGGAAAGTTC-CT-TTTTT-T-AGGAAATCTATCTGTTT
193 GTGATTGTAAATCAACTAAAGTTTTTCAGAAAGCTCTCTATTTTTCTGAGCAAATCGATCTACTT
* * *
32739963 CAAGCCTCATTTCAAACACATGGTAAATAAAACTAACTTCAGCCTTC-CTAAGGCAATATAACAA
258 CAAGCCTCATTTCAAACACATGGTAAAGAAAACTAACTTCAGCC-TCACAAAGGCAATAGAACAA
* * * * *
32740027 AATTGATACATCTATTTTTCTTTCAA-G-A-TT-AGTTCTTCAGCAACACACTTATATTCATCAT
322 AATTGATACAGCTATCTTCCTTTCAAGGCAGTTAAGTTCTTCAGCAACACACCTATATTCATCAC
* * * *
32740088 CTCTGGCATCTAATTTGCTTTGAAAGGAAAAAG-GGTCAATTTTGAGTTATTCCTCAACACACCT
387 CTCTAGCATCTAACTTACTCTG-AAGGAAAAAGAGGTCAATTTTGAGTTATTCCTCAACACACCT
** * * **
32740152 AGATTCGTAAAATCATGTAAGTAGAAGGTTGTGATCGTAAATTA-CTGGA-CTACAAGATTCATA
1 AGATTCGTAAAATCACATAAGTAGAAGGTCGTGATCGTAAATCAGC-AAACCT-CAAGATTCATA
*
32740215 AAATCCCATAAGT
64 AAATCCTATAAGT
32740228 GGATGGTCGT
Statistics
Matches: 435, Mismatches: 74, Indels: 27
0.81 0.14 0.05
Matches are distributed among these distances:
441 3 0.01
442 135 0.31
443 10 0.02
445 1 0.00
447 1 0.00
448 84 0.19
449 3 0.01
450 5 0.01
451 13 0.03
452 180 0.41
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (450 bp):
AGATTCGTAAAATCACATAAGTAGAAGGTCGTGATCGTAAATCAGCAAACCTCAAGATTCATAAA
ATCCTATAAGTAAAAAATCGATACCATAAATCAGCAGACCACGAGATTCGTAAAATATCGCAAGT
AGAAGGTCATCATTGAAAATCAGCAGACTGTGAAATTCATAAAGTCCCGAAAGTAAAAGATCGTG
ATTGTAAATCAACTAAAGTTTTTCAGAAAGCTCTCTATTTTTCTGAGCAAATCGATCTACTTCAA
GCCTCATTTCAAACACATGGTAAAGAAAACTAACTTCAGCCTCACAAAGGCAATAGAACAAAATT
GATACAGCTATCTTCCTTTCAAGGCAGTTAAGTTCTTCAGCAACACACCTATATTCATCACCTCT
AGCATCTAACTTACTCTGAAGGAAAAAGAGGTCAATTTTGAGTTATTCCTCAACACACCT
Found at i:32740281 original size:54 final size:54
Alignment explanation
Indices: 32740152--32740328 Score: 178
Period size: 54 Copynumber: 3.3 Consensus size: 54
32740142 CAACACACCT
* * * * * *
32740152 AGATTCGTAAAATCATGTAAGTAGAAGGTTGTGATCGTAAATT-ACTGGACTACA
1 AGATTCATAAAATCCTGTAAGTAGAAGGTCGTGATTGTAAATTAAC-GGACTGCG
** * *
32740206 AGATTCATAAAATCCCATAAGTGGATGGTCGTGATTGTAAATTAACGGACTGCG
1 AGATTCATAAAATCCTGTAAGTAGAAGGTCGTGATTGTAAATTAACGGACTGCG
* * * * *
32740260 AGATTCATAAAATCCTGTAAGTAGAAGATCATGATCTG-AAATTAGCAGACTGTG
1 AGATTCATAAAATCCTGTAAGTAGAAGGTCGTGAT-TGTAAATTAACGGACTGCG
*
32740314 AGACTCATAAAATCC
1 AGATTCATAAAATCC
32740329 CATAAGTAAA
Statistics
Matches: 101, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
54 97 0.96
55 4 0.04
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (54 bp):
AGATTCATAAAATCCTGTAAGTAGAAGGTCGTGATTGTAAATTAACGGACTGCG
Found at i:32740311 original size:442 final size:449
Alignment explanation
Indices: 32739259--32740354 Score: 1058
Period size: 442 Copynumber: 2.4 Consensus size: 449
32739249 ACAGACCGTG
* * * * * * * * * * *
32739259 AGATCCGT-AAATCAAATAAATAGAAGTTCATGATCATAAATCAGTATACCGT-GAGATTAATAA
1 AGATTCGTAAAATCACATAAGTAGAAGGTCGTGATCGTAAATCAGCAAACC-TCAAGATTCACAA
* ** * * * *
32739322 AATCCTATAAGTAAAAAATCGAT-ACCATAAATTAGCAGACCATGAGATTCGTAAAATCTCGTAA
65 AATCCCATAAGTAAAAGGTC-ATGATCATAAATCAACAGACCACGAGATTCGTAAAATCTCGTAA
* * * *
32739386 GTAGAAGGTCATCATTGAAAATCAGTAGACTGTGAAATTTATAAAGTCCCGAAAGTAAAAGATCG
129 GTAGAAGGTCATCATTG-AAATTAGCAGACTGTGAGATTCATAAAGTCCCGAAAGTAAAAGATCG
* * *
32739451 TGATTGTAAATCAACTGAAGTTTTTCAGAAAGCTCTTTATTTTTCTGAGCAGATCGATCTACTTC
193 TGATTGTAAATCAACTAAAGTTTTTCAGAAAGCTCTCTATTTTTCTGAGCAAATCGATCTACTTC
* ** ** * *
32739516 AAGCCTCATTTCATACGTATGGTGTAGAGAACTAGCTTCAGCCTCACAAAGGCAATAGAACAAAA
258 AAGCCTCATTTCAAACACATGGTAAAGAAAACTAACTTCAGCCTCACAAAGGCAATAGAACAAAA
* * * **
32739581 TTTATACCGCTATCTTCCTTTCAAGGTCAGTTTAAGTTCTTCATCAACATGCCTATATTCATCAC
323 TTGATACAGCTATCTTCCTTTCAAGG-CAG-TTAAGTTCTTCAGCAACACACCTATATTCATCAC
**
32739646 CTCTAGCATCTAACTTACTCTGAAGGGCAAAGAGGTCAATTTTGAGTTATTCCTCAACACACCT
386 CTCTAGCATCTAACTTACTCTGAAGGAAAAAGAGGTCAATTTTGAGTTATTCCTCAACACACCT
**
32739710 AGATTCGTAAAATCACATAAGTAGAAGGTCGTGATCGTAAATCAGCAAACCTTGAGATTCACAAA
1 AGATTCGTAAAATCACATAAGTAGAAGGTCGTGATCGTAAATCAGCAAACCTCAAGATTCACAAA
** * * * *
32739775 ATCCTGTAAGTAAAAGGTCATTATCATAAATCATCAGACCACGAGA-TCTGTAAAATATCGCAAG
66 ATCCCATAAGTAAAAGGTCATGATCATAAATCAACAGACCACGAGATTC-GTAAAATCTCGTAAG
* * * * * *
32739839 TTGAAGGTCGTCATTGAAAATCGACAGACTGTGAGATTCATAAAGTCCCGAAAGTAAAAGGTTGT
130 TAGAAGGTCATCATTGAAATTAG-CAGACTGTGAGATTCATAAAGTCCCGAAAGTAAAAGATCGT
* ** * * * **
32739904 GATTGTAAATCAGCTAAAGTTTTTTGGAAAGTTC-CT-TTTTT-T-AGGAAATCTATCTGTTTCA
194 GATTGTAAATCAACTAAAGTTTTTCAGAAAGCTCTCTATTTTTCTGAGCAAATCGATCTACTTCA
* * *
32739965 AGCCTCATTTCAAACACATGGTAAATAAAACTAACTTCAGCCTTC-CTAAGGCAATATAACAAAA
259 AGCCTCATTTCAAACACATGGTAAAGAAAACTAACTTCAGCC-TCACAAAGGCAATAGAACAAAA
* * * * *
32740029 TTGATACATCTATTTTTCTTTCAA-G-A-TT-AGTTCTTCAGCAACACACTTATATTCATCATCT
323 TTGATACAGCTATCTTCCTTTCAAGGCAGTTAAGTTCTTCAGCAACACACCTATATTCATCACCT
* * * *
32740090 CTGGCATCTAATTTGCTTTGAAAGGAAAAAG-GGTCAATTTTGAGTTATTCCTCAACACACCT
388 CTAGCATCTAACTTACTCTG-AAGGAAAAAGAGGTCAATTTTGAGTTATTCCTCAACACACCT
** * * ** *
32740152 AGATTCGTAAAATCATGTAAGTAGAAGGTTGTGATCGTAAATTA-CTGGA-CTACAAGATTCATA
1 AGATTCGTAAAATCACATAAGTAGAAGGTCGTGATCGTAAATCAGC-AAACCT-CAAGATTCACA
** * * ** * * ** *
32740215 AAATCCCATAAGTGGATGGTCGTGATTGTAAATTAACGGACTGCGAGATTCATAAAATC-CTGTA
64 AAATCCCATAAGTAAAAGGTCATGATCATAAATCAACAGACCACGAGATTCGTAAAATCTC-GTA
* * * * *
32740279 AGTAGAAGATCATGATCTGAAATTAGCAGACTGTGAGACTCATAAAATCCC-ATAAGTAAATGAT
128 AGTAGAAGGTCATCAT-TGAAATTAGCAGACTGTGAGATTCATAAAGTCCCGA-AAGTAAAAGAT
* *
32740343 CGTCATCGTAAA
191 CGTGATTGTAAA
32740355 CCAGCAATCC
Statistics
Matches: 527, Mismatches: 105, Indels: 35
0.79 0.16 0.05
Matches are distributed among these distances:
441 5 0.01
442 219 0.42
443 19 0.04
445 1 0.00
447 1 0.00
448 84 0.16
449 3 0.01
450 5 0.01
451 17 0.03
452 173 0.33
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (449 bp):
AGATTCGTAAAATCACATAAGTAGAAGGTCGTGATCGTAAATCAGCAAACCTCAAGATTCACAAA
ATCCCATAAGTAAAAGGTCATGATCATAAATCAACAGACCACGAGATTCGTAAAATCTCGTAAGT
AGAAGGTCATCATTGAAATTAGCAGACTGTGAGATTCATAAAGTCCCGAAAGTAAAAGATCGTGA
TTGTAAATCAACTAAAGTTTTTCAGAAAGCTCTCTATTTTTCTGAGCAAATCGATCTACTTCAAG
CCTCATTTCAAACACATGGTAAAGAAAACTAACTTCAGCCTCACAAAGGCAATAGAACAAAATTG
ATACAGCTATCTTCCTTTCAAGGCAGTTAAGTTCTTCAGCAACACACCTATATTCATCACCTCTA
GCATCTAACTTACTCTGAAGGAAAAAGAGGTCAATTTTGAGTTATTCCTCAACACACCT
Found at i:32740726 original size:54 final size:54
Alignment explanation
Indices: 32740661--32740861 Score: 183
Period size: 54 Copynumber: 3.8 Consensus size: 54
32740651 CAACATGTCT
* * * * * * *
32740661 AGATTCGTAAAATCATGTAAGTTGAAGGTCGTGATCGTAAATTAGCGGACCGTG
1 AGATTCTTAAAATCATATAAGTAGAAGGTCGTGATCATAAATCAGCAGACCATG
* ** * * * * * *
32740715 AGATTCTTAAAACCCCATAAGTAGAAGCTTGTGGTCGTAAATCAGCAGTCCACG
1 AGATTCTTAAAATCATATAAGTAGAAGGTCGTGATCATAAATCAGCAGACCATG
*
32740769 AGATTCTTAAAAGTC--ATAA-TAGAAGGTCGTGATCATAAATCAGCTGACCATG
1 AGATTCTTAAAA-TCATATAAGTAGAAGGTCGTGATCATAAATCAGCAGACCATG
* * * *
32740821 AGATTCGTAAAATCCTATAAGTAAAAGGTCGTCATCATAAA
1 AGATTCTTAAAATCATATAAGTAGAAGGTCGTGATCATAAA
32740862 CTAGTAGACT
Statistics
Matches: 118, Mismatches: 25, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
51 2 0.02
52 37 0.31
53 8 0.07
54 70 0.59
55 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.26
Consensus pattern (54 bp):
AGATTCTTAAAATCATATAAGTAGAAGGTCGTGATCATAAATCAGCAGACCATG
Found at i:32743403 original size:20 final size:21
Alignment explanation
Indices: 32743378--32743418 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
32743368 TCGTAAGGTC
32743378 TCGTAAAT-AGGTGG-CCATGA
1 TCGTAAATCA-GTGGACCATGA
32743398 TCGTAAATCAGTGGACCATGA
1 TCGTAAATCAGTGGACCATGA
32743419 GTTCTTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (21 bp):
TCGTAAATCAGTGGACCATGA
Found at i:32743505 original size:54 final size:53
Alignment explanation
Indices: 32743395--32743515 Score: 138
Period size: 54 Copynumber: 2.3 Consensus size: 53
32743385 TAGGTGGCCA
* * * * *
32743395 TGATCGTAAATCAGTGGACCATGAGTTCTTAAAATCCTGTATGTAGAAGATTG
1 TGATCGTAAATTAGTGGACCATGAGTTCGTAAAATCCTATAAGTAGAAGATCG
* *
32743448 TGATCGTAAATTAGTGGACCGTGAGACTT-GTAAAAT-CTCATAAGTAGAAGGTCG
1 TGATCGTAAATTAGTGGACCATGAG--TTCGTAAAATCCT-ATAAGTAGAAGATCG
32743502 TGATCGTAAATTAG
1 TGATCGTAAATTAG
32743516 CGAATTGTGA
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
53 25 0.43
54 31 0.53
55 2 0.03
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (53 bp):
TGATCGTAAATTAGTGGACCATGAGTTCGTAAAATCCTATAAGTAGAAGATCG
Done.