Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold1821.1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 354777
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.32
Warning! 9659 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:6875 original size:18 final size:20
Alignment explanation
Indices: 6839--6875 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
6829 TTAATAAAAC
*
6839 ATATGTTTTTATGTGTTTTG
1 ATATGTTTTTATGTATTTTG
6859 ATAT-TTTTTA-GTATTTT
1 ATATGTTTTTATGTATTTT
6876 TGTGTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 6 0.38
19 6 0.38
20 4 0.25
ACGTcount: A:0.19, C:0.00, G:0.14, T:0.68
Consensus pattern (20 bp):
ATATGTTTTTATGTATTTTG
Found at i:12437 original size:37 final size:37
Alignment explanation
Indices: 12395--12482 Score: 104
Period size: 37 Copynumber: 2.4 Consensus size: 37
12385 GGACTTCTAC
* **
12395 TGGATTATGCCATGCAAGTGAATCTAGCGGACCTCCA
1 TGGATTATGCCATGCAAGCGAATCTAGCAAACCTCCA
* * * * *
12432 TGGATTATGCCATGTAGGCGAATCTGGCAAACCTTCT
1 TGGATTATGCCATGCAAGCGAATCTAGCAAACCTCCA
12469 TGGATTATGCCATG
1 TGGATTATGCCATG
12483 GCCATGGAGT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (37 bp):
TGGATTATGCCATGCAAGCGAATCTAGCAAACCTCCA
Found at i:12561 original size:22 final size:22
Alignment explanation
Indices: 12536--12606 Score: 83
Period size: 22 Copynumber: 3.2 Consensus size: 22
12526 CCACAAAGTC
*
12536 TCATACTACTCTGAAAGGGTTT
1 TCATACTACTCTGAAAGGGCTT
*
12558 TCATACTACCCAT-AAAGGGCTT
1 TCATACTACTC-TGAAAGGGCTT
*
12580 TCATACTACT-TGTAAAGGACTT
1 TCATACTACTCTG-AAAGGGCTT
12602 TCATA
1 TCATA
12607 TCCATGTGCA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
20 1 0.02
22 40 0.95
23 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (22 bp):
TCATACTACTCTGAAAGGGCTT
Found at i:14448 original size:40 final size:40
Alignment explanation
Indices: 14404--14501 Score: 169
Period size: 40 Copynumber: 2.5 Consensus size: 40
14394 AAATGAATAA
*
14404 ATGAAATGTTTATATGAATCAGTTATATGGAAATAGATAT
1 ATGAAATGGTTATATGAATCAGTTATATGGAAATAGATAT
*
14444 ATGAAATGGTTATATGAATTAGTTATATGGAAATAGATAT
1 ATGAAATGGTTATATGAATCAGTTATATGGAAATAGATAT
*
14484 ATGGAATGGTTATATGAA
1 ATGAAATGGTTATATGAA
14502 AATAAATATA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.42, C:0.01, G:0.20, T:0.37
Consensus pattern (40 bp):
ATGAAATGGTTATATGAATCAGTTATATGGAAATAGATAT
Found at i:14517 original size:40 final size:39
Alignment explanation
Indices: 14433--14557 Score: 117
Period size: 40 Copynumber: 3.1 Consensus size: 39
14423 CAGTTATATG
* * * *
14433 GAAATAGATATATGAAATGGTTATATGAATTAGTTATATG
1 GAAATAGATATATGGAATGGTTATATGAAATAGATATA-C
*
14473 GAAATAGATATATGGAATGGTTATATGAAAATAAATATAC
1 GAAATAGATATATGGAATGGTTATATG-AAATAGATATAC
* * * * *
14513 GAAATGGTTATAT-GAATCGATTATACGGAAATAGATATAT
1 GAAATAGATATATGGAAT-GGTTATA-TGAAATAGATATAC
14553 GAAAT
1 GAAAT
14558 GTTTATACGA
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
39 4 0.06
40 58 0.82
41 9 0.13
ACGTcount: A:0.46, C:0.02, G:0.19, T:0.33
Consensus pattern (39 bp):
GAAATAGATATATGGAATGGTTATATGAAATAGATATAC
Found at i:14517 original size:67 final size:67
Alignment explanation
Indices: 14425--14569 Score: 202
Period size: 67 Copynumber: 2.2 Consensus size: 67
14415 ATATGAATCA
* * * * *
14425 GTTATATGGAAATAGATATATGAAATGGTTATATGAATTAG-TTATATGGAAATAGATATATGGA
1 GTTATATGAAAATAAATATACGAAATGGTTATATGAA-TAGATTATACGGAAATAGATATATGAA
14489 ATG
65 ATG
*
14492 GTTATATGAAAATAAATATACGAAATGGTTATATGAATCGATTATACGGAAATAGATATATGAAA
1 GTTATATGAAAATAAATATACGAAATGGTTATATGAATAGATTATACGGAAATAGATATATGAAA
14557 TG
66 TG
* *
14559 TTTATACGAAA
1 GTTATATGAAA
14570 TGTTTTTATA
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
66 2 0.03
67 67 0.97
ACGTcount: A:0.44, C:0.03, G:0.19, T:0.34
Consensus pattern (67 bp):
GTTATATGAAAATAAATATACGAAATGGTTATATGAATAGATTATACGGAAATAGATATATGAAA
TG
Found at i:14563 original size:27 final size:27
Alignment explanation
Indices: 14413--14570 Score: 105
Period size: 27 Copynumber: 5.9 Consensus size: 27
14403 AATGAAATGT
* *
14413 TTATATG-AATCAGTTATATGGAAATAG
1 TTATATGAAATGA-TTATACGGAAATAG
* * * *
14440 ATATATGAAATGGTTATA-TGAATTAG
1 TTATATGAAATGATTATACGGAAATAG
* *
14466 TTATATGGAAATAGA-TATATGG-AATGG
1 TTATAT-GAAAT-GATTATACGGAAATAG
* * *
14493 TTATATGAAAATAAATATAC-GAAATGG
1 TTATATG-AAATGATTATACGGAAATAG
14520 TTATATG-AATCGATTATACGGAAATAG
1 TTATATGAAAT-GATTATACGGAAATAG
* *
14547 ATATATGAAATGTTTATAC-GAAAT
1 TTATATGAAATGATTATACGGAAAT
14571 GTTTTTATAC
Statistics
Matches: 104, Mismatches: 17, Indels: 21
0.73 0.12 0.15
Matches are distributed among these distances:
25 3 0.03
26 25 0.24
27 68 0.65
28 8 0.08
ACGTcount: A:0.44, C:0.03, G:0.18, T:0.35
Consensus pattern (27 bp):
TTATATGAAATGATTATACGGAAATAG
Found at i:20492 original size:27 final size:27
Alignment explanation
Indices: 20462--20513 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
20452 GGTTATAGGA
20462 GGTCCCAATACCCTAAGGGTCATGGGT
1 GGTCCCAATACCCTAAGGGTCATGGGT
20489 GGTCCCAATACCCTAAGGGTCATGG
1 GGTCCCAATACCCTAAGGGTCATGG
20514 ACATTACTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (27 bp):
GGTCCCAATACCCTAAGGGTCATGGGT
Found at i:27262 original size:19 final size:19
Alignment explanation
Indices: 27238--27274 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
27228 GCTTTGGGTC
27238 TGTTTTGGGTCTTGGGTTT
1 TGTTTTGGGTCTTGGGTTT
27257 TGTTTTGGGTCTTGGGTT
1 TGTTTTGGGTCTTGGGTT
27275 GGTTTTAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.00, C:0.05, G:0.38, T:0.57
Consensus pattern (19 bp):
TGTTTTGGGTCTTGGGTTT
Found at i:29442 original size:31 final size:31
Alignment explanation
Indices: 29368--29495 Score: 114
Period size: 33 Copynumber: 4.0 Consensus size: 31
29358 AAATTATTTG
* *
29368 TAAATTTAATGATAAATGAAATATTTTAAAT-TT
1 TAAATATAATGATAAAT--AATA-TTTAAATAAT
** *
29401 TGCATATAATGATAAATAATTTTTAAATAAT
1 TAAATATAATGATAAATAATATTTAAATAAT
**
29432 TAAATATAATGATATTTGTAATATTTAAATAAT
1 TAAATATAATGATA--AATAATATTTAAATAAT
** *
29465 TTGATATAATGATAAATTATATTTAAATAAT
1 TAAATATAATGATAAATAATATTTAAATAAT
29496 ATCATAAAAT
Statistics
Matches: 77, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
30 7 0.09
31 30 0.39
33 40 0.52
ACGTcount: A:0.48, C:0.01, G:0.06, T:0.45
Consensus pattern (31 bp):
TAAATATAATGATAAATAATATTTAAATAAT
Found at i:29455 original size:64 final size:63
Alignment explanation
Indices: 29368--29495 Score: 168
Period size: 64 Copynumber: 2.0 Consensus size: 63
29358 AAATTATTTG
* *
29368 TAAATTTAATGATAAATGAAATATTTTAAAT-TTTGCATATAATGATAAATAATTTTTAAATAAT
1 TAAATATAATGATAAATGAAATA-TTTAAATATTTG-ATATAATGATAAATAATATTTAAATAAT
** * *
29432 TAAATATAATGATATTTGTAATATTTAAATAATTTGATATAATGATAAATTATATTTAAATAAT
1 TAAATATAATGATAAATGAAATATTTAAAT-ATTTGATATAATGATAAATAATATTTAAATAAT
29496 ATCATAAAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
63 7 0.12
64 45 0.80
65 4 0.07
ACGTcount: A:0.48, C:0.01, G:0.06, T:0.45
Consensus pattern (63 bp):
TAAATATAATGATAAATGAAATATTTAAATATTTGATATAATGATAAATAATATTTAAATAAT
Found at i:33374 original size:21 final size:20
Alignment explanation
Indices: 33350--33389 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
33340 GTTAAAATTA
*
33350 AAATTTAAAGTAAATTAAACT
1 AAATTAAAAGTAAA-TAAACT
33371 AAATTAAAAGTAAATAAAC
1 AAATTAAAAGTAAATAAAC
33390 ATTTAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (20 bp):
AAATTAAAAGTAAATAAACT
Found at i:38726 original size:19 final size:21
Alignment explanation
Indices: 38687--38728 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
38677 TCTAAATTTA
*
38687 TTTTTATATTTTTATATTATT
1 TTTTTATATTTTTACATTATT
38708 TTTTTA-ATTTTTACA-TATT
1 TTTTTATATTTTTACATTATT
38727 TT
1 TT
38729 AATTTTTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 8 0.40
21 6 0.30
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTTTATATTTTTACATTATT
Found at i:43601 original size:17 final size:19
Alignment explanation
Indices: 43579--43616 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
43569 AAGTTAATTC
43579 AAAACAT-AAAAT-TTATA
1 AAAACATAAAAATGTTATA
43596 AAAACATAAAAATGTTATA
1 AAAACATAAAAATGTTATA
43615 AA
1 AA
43617 TTAATTAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 5 0.26
19 7 0.37
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (19 bp):
AAAACATAAAAATGTTATA
Found at i:43974 original size:9 final size:9
Alignment explanation
Indices: 43960--43998 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
43950 TTCTTATAGT
*
43960 TTTTAATTA
1 TTTTAATAA
43969 TTTTAA-AA
1 TTTTAATAA
*
43977 TTTTTATAA
1 TTTTAATAA
43986 TTTTAATAA
1 TTTTAATAA
43995 TTTT
1 TTTT
43999 TTTAATTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
8 6 0.23
9 20 0.77
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (9 bp):
TTTTAATAA
Found at i:43980 original size:18 final size:18
Alignment explanation
Indices: 43968--44007 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
43958 GTTTTTAATT
43968 ATTTTAA-AATTTTTATA
1 ATTTTAATAATTTTTATA
*
43985 ATTTTAATAATTTTTTTA
1 ATTTTAATAATTTTTATA
44003 ATTTT
1 ATTTT
44008 TTATTCTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
ATTTTAATAATTTTTATA
Found at i:44009 original size:20 final size:19
Alignment explanation
Indices: 43959--44010 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
43949 TTTCTTATAG
43959 TTTTTAATTATTTTAAAATT
1 TTTTTAATT-TTTTAAAATT
*
43979 TTTATAA--TTTTAATAATT
1 TTTTTAATTTTTTAA-AATT
43997 TTTTTAATTTTTTA
1 TTTTTAATTTTTTA
44011 TTCTAAACTG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
17 6 0.22
18 10 0.37
20 11 0.41
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTTTAATTTTTTAAAATT
Found at i:61858 original size:21 final size:20
Alignment explanation
Indices: 61833--61897 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
61823 TAGCCTTCGG
61833 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTT-TGT
** * *
61854 GCTT-CAATTAGC-CTTCGG
1 GCTTCCGTTTAGCACTTTGT
61872 GCTTCCGTTTAGCACTTTTGT
1 GCTTCCGTTTAGCAC-TTTGT
61893 GCTTC
1 GCTTC
61898 AGTTAGATTT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 5 0.15
19 9 0.27
20 7 0.21
21 12 0.36
ACGTcount: A:0.12, C:0.26, G:0.20, T:0.42
Consensus pattern (20 bp):
GCTTCCGTTTAGCACTTTGT
Found at i:61910 original size:39 final size:39
Alignment explanation
Indices: 61815--61903 Score: 160
Period size: 39 Copynumber: 2.3 Consensus size: 39
61805 GCTCTGATGA
61815 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
* *
61854 GCTTCAATTAGCCTTCGGGCTTCCGTTTAGCACTTTTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
61893 GCTTCAGTTAG
1 GCTTCAGTTAG
61904 ATTTCGGTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.13, C:0.25, G:0.22, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:63149 original size:20 final size:18
Alignment explanation
Indices: 63126--63168 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
63116 AGCCCCCCCC
63126 AAAAAACCTAACCCCCAAAA
1 AAAAAACCTAA--CCCAAAA
63146 AAAAAACCTAACCCAAAA
1 AAAAAACCTAACCCAAAA
63164 AAAAA
1 AAAAA
63169 CTAAGAAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 12 0.52
20 11 0.48
ACGTcount: A:0.67, C:0.28, G:0.00, T:0.05
Consensus pattern (18 bp):
AAAAAACCTAACCCAAAA
Found at i:66371 original size:24 final size:24
Alignment explanation
Indices: 66328--66377 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
66318 TTCCTTTCTT
*
66328 TTGCATTCATTCCATACATTTGCA
1 TTGCATTCATTCCATACATTGGCA
*
66352 TTGCATTGCATTGCAT-CATTGGCA
1 TTGCATT-CATTCCATACATTGGCA
66376 TT
1 TT
66378 AAACTTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.42
Consensus pattern (24 bp):
TTGCATTCATTCCATACATTGGCA
Found at i:73699 original size:76 final size:74
Alignment explanation
Indices: 73557--74276 Score: 361
Period size: 72 Copynumber: 9.3 Consensus size: 74
73547 GGTATTTTTT
* *
73557 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATT
73622 TTTGTTGTC
66 TTTGTTGTC
* * *
73631 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--ACACGCCGAGGTAATTTCAA
* *
73696 TTTTCGTTTTTC
64 TTTTTG-TTGTC
* * * * * *
73708 AATTTCTACCTTTCAAAA-AAAATCA-ACT-C-ATATTGCGAGAGGTGAGTGGAGCCTCAGGAGA
1 AA-----A------AAAATCAACTCATATTGCGAGA--G-GCGA-GT---T-GAGCCTCAGGACA
*
73769 CGCTGAGGTAATTTCAATTTTTGTTGTC
47 CGCCGAGGTAATTTCAATTTTTGTTGTC
* * *
73797 AAAAAAATCAACTCGTATTGCGAGAGGCGA-TTGAGCCTTAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--ACACGCCGAGGTAATTTCAA
** *
73861 TTTCCGTTTTTC
64 TTTTTG-TTGTC
** * * * *
73873 AATTTCTACCTTTCAAAAAAAAATCA-ACT-C-ATATTGCGAGAGGTGAGTGGAGCCTCAGGACA
1 AA-----A------AAAATCAACTCATATTGCGAGA--G-GCGA-GT---T-GAGCCTCAGGACA
* *
73935 CGCTGAGGTAATTTCAATTTCTGTTGTC
47 CGCCGAGGTAATTTCAATTTTTGTTGTC
*** * * * *
73963 AAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCA
1 ---AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCA
*
74028 ATTTTTGTCTTTC
63 ATTTTTGT-TGTC
* * *
74041 AAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATT
* *
74106 TCTGTTTTC
66 TTTGTTGTC
* *** * *
74115 --AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATT
* *
74178 TCTGTTTTC
66 TTTGTTGTC
* * * *** * *
74187 --AAAATTTAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATT
* * *
74250 TCTATTTTC
66 TTTGTTGTC
*
74259 --AAAATTCAACTCATATTG
1 AAAAAAATCAACTCATATTG
74277 NNNNNNNNNN
Statistics
Matches: 514, Mismatches: 76, Indels: 114
0.73 0.11 0.16
Matches are distributed among these distances:
72 150 0.29
73 9 0.02
74 45 0.09
75 84 0.16
76 29 0.06
77 40 0.08
78 8 0.02
79 7 0.01
80 3 0.01
81 4 0.01
82 14 0.03
83 2 0.00
84 6 0.01
85 4 0.01
86 6 0.01
87 18 0.04
88 7 0.01
89 7 0.01
90 26 0.05
91 24 0.05
92 10 0.02
93 11 0.02
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (74 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATT
TTTGTTGTC
Found at i:73894 original size:166 final size:165
Alignment explanation
Indices: 73557--74185 Score: 821
Period size: 166 Copynumber: 3.9 Consensus size: 165
73547 GGTATTTTTT
*
73557 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATT
* * **
73622 TTTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTTAGGTCACACGCCGAGG
66 TCTGTTGTCAAAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTTAGG-CACACGCCGAGG
*
73687 TATTTTCAATTTTCGTTTTTCAATTTCTACCTTTCA
130 TATTTTCAATTTCCGTTTTTCAATTTCTACCTTTCA
*
73723 AAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGAGACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATT
* * **
73788 TTTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGA-TTGAGCCTTAGGTCACACGCCGAGG
66 TCTGTTGTCAAAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTTAGG-CACACGCCGAGG
73852 TATTTTCAATTTCCGTTTTTCAATTTCTACCTTTCAA
130 TATTTTCAATTTCCGTTTTTCAATTTCTACCTTTC-A
73889 AAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATT
* * * * *
73954 TCTGTTGTCAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACATGCTGA
66 TCTGTTGTC---AAAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTTAGGCACACGCCGA
*
74018 GGTATTTTCAA---------TT---TTTGT--CTTTC-
128 GGTATTTTCAATTTCCGTTTTTCAATTTCTACCTTTCA
* *
74041 AAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATT
* * * * * *
74106 TCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC-TCGGGACACGCTGAGGT
66 TCTGTTGTCAAAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTTAGGCACACGCCGAGGT
* *
74168 AATTTCAATTTCTGTTTT
131 ATTTTCAATTTCCGTTTT
74186 CAAAATTTAA
Statistics
Matches: 425, Mismatches: 23, Indels: 40
0.87 0.05 0.08
Matches are distributed among these distances:
146 1 0.00
147 53 0.12
152 71 0.17
154 5 0.01
156 5 0.01
159 2 0.00
165 59 0.14
166 175 0.41
168 18 0.04
169 26 0.06
170 10 0.02
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31
Consensus pattern (165 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATT
TCTGTTGTCAAAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTTAGGCACACGCCGAGGT
ATTTTCAATTTCCGTTTTTCAATTTCTACCTTTCA
Found at i:74158 original size:72 final size:72
Alignment explanation
Indices: 73891--74276 Score: 529
Period size: 72 Copynumber: 5.2 Consensus size: 72
73881 CCTTTCAAAA
** *
73891 AAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
*
73956 TGTTGTC
66 TGTTTTC
* * *
73963 AAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCA
1 -----AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
*
74028 ATTTTTGTCTTTC
61 ATTTCTGT-TTTC
* **
74041 AAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
74106 TCTGTTTTC
64 TCTGTTTTC
* *
74115 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
74180 TGTTTTC
66 TGTTTTC
* * * *
74187 AAAATTTAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
*
74252 TATTTTC
66 TGTTTTC
*
74259 AAAATTCAACTCATATTG
1 AAAAATCAACTCATATTG
74277 NNNNNNNNNN
Statistics
Matches: 281, Mismatches: 27, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
72 150 0.53
74 4 0.01
75 63 0.22
77 61 0.22
78 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:82582 original size:83 final size:83
Alignment explanation
Indices: 82438--82632 Score: 259
Period size: 83 Copynumber: 2.3 Consensus size: 83
82428 TTCGATTTGT
* ** * *
82438 AAGGATGTCAAATTATCTTGAGTCTGCTTGAGAACATTTGAGAGTCATATCTGCTATGTCCTCGA
1 AAGGATGACAAAACATCTTGAGTCTGCTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGA
*
82503 TTTATTCCTTGTAAGCAC
66 TTTATTCCTTGTAAACAC
* *
82521 AAGGATGCCAAAACATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGA
1 AAGGATGACAAAACATCTTGAGTCTGCTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGA
* *
82586 TTTGTTTCTTGTAAACAC
66 TTTATTCCTTGTAAACAC
*
82604 AAGAAT-ACAAAATCATCTTG-GATCTGCTT
1 AAGGATGACAAAA-CATCTTGAG-TCTGCTT
82633 CAGTATAAAC
Statistics
Matches: 98, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
82 6 0.06
83 92 0.94
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (83 bp):
AAGGATGACAAAACATCTTGAGTCTGCTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGA
TTTATTCCTTGTAAACAC
Found at i:82812 original size:202 final size:202
Alignment explanation
Indices: 82466--82944 Score: 850
Period size: 202 Copynumber: 2.4 Consensus size: 202
82456 TGAGTCTGCT
* * * *
82466 TGAGAACATTTGAGAGTCATATCTGCTATGTCCTCGATTTATTCCTTGTAAGCACAAGGATGCCA
1 TGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCA
*
82531 AAACATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTCTT
66 AATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTCTT
*
82596 GTAAACACAAGAATACAAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTG
131 GTAAACACAAGAATACAAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTC
82661 CTATATG
196 CTATATG
*
82668 TGAGAACGTCTGAGAGTCAAATCTTCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCA
1 TGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCA
*
82733 AATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCCTATCTGCAACGTCCTCGATTTGTTTCTT
66 AATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTCTT
82798 GTAAACACAAGAATACAAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTC
131 GTAAACACAAGAATACAAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTC
82863 CTATATG
196 CTATATG
* * * *
82870 TGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCA
1 TGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCA
82935 AATCATCTTG
66 AATCATCTTG
82945 GATTTGCTTC
Statistics
Matches: 264, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
202 264 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (202 bp):
TGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCA
AATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTCTT
GTAAACACAAGAATACAAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTC
CTATATG
Found at i:82962 original size:119 final size:119
Alignment explanation
Indices: 82751--83031 Score: 454
Period size: 119 Copynumber: 2.4 Consensus size: 119
82741 TGAGTCTGTT
* * ** * *
82751 TGAGAACATTTGAGAGTCCTATCTGCAACGTCCTCGATTTGTTTCTTGTAAACACAAGAATACAA
1 TGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACAA
82816 AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTCCTATATG
66 AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTCCTATATG
*
82870 TGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCA
1 TGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACAA
* * * *
82935 AATCATCTTGGATTTGCTTCAGTATAAACATCTGAAGGTTAGCTCTGCTATATT
66 AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTCCTATATG
*
82989 TGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCAATTTGTT
1 TGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTT
83032 CCCCATAAGC
Statistics
Matches: 150, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
119 150 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (119 bp):
TGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACAA
AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTCCTATATG
Found at i:89116 original size:21 final size:19
Alignment explanation
Indices: 89083--89128 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
89073 AATATTAGTT
89083 TAAAAAAAGAAATAATATATA
1 TAAAAAAAGAAATAAT-TA-A
* *
89104 TAAATAAATAAATAATTAA
1 TAAAAAAAGAAATAATTAA
89123 TAAAAA
1 TAAAAA
89129 TATGTATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 6 0.27
20 2 0.09
21 14 0.64
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (19 bp):
TAAAAAAAGAAATAATTAA
Found at i:89535 original size:17 final size:17
Alignment explanation
Indices: 89513--89547 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
89503 AAAATAAACA
*
89513 AATAATACAATATATAT
1 AATAATACAATAAATAT
*
89530 AATAATATAATAAATAT
1 AATAATACAATAAATAT
89547 A
1 A
89548 GGACTAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (17 bp):
AATAATACAATAAATAT
Found at i:94096 original size:24 final size:23
Alignment explanation
Indices: 94046--94096 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 23
94036 TTTTCCAATT
*
94046 TTATTTTGTTTTTCATTATTTTTA
1 TTATTTTGTTTTT-ATTATTTTGA
94070 TTATTTTGTTTTT-TTCATTGTTGA
1 TTATTTTGTTTTTATT-ATT-TTGA
94094 TTA
1 TTA
94097 AGAAAATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 2 0.08
23 3 0.12
24 19 0.79
ACGTcount: A:0.16, C:0.04, G:0.08, T:0.73
Consensus pattern (23 bp):
TTATTTTGTTTTTATTATTTTGA
Found at i:105956 original size:21 final size:21
Alignment explanation
Indices: 105932--106007 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
105922 TGAGTTTCAT
105932 TTTAACCCTTATGGGTTTCCA
1 TTTAACCCTTATGGGTTTCCA
* ** *
105953 TTTAGCTCC-TATAAGCTTCCA
1 TTTAAC-CCTTATGGGTTTCCA
* *
105974 TTTAACCCTTACGGGTTTCCG
1 TTTAACCCTTATGGGTTTCCA
* *
105995 TTTAGCACTTATG
1 TTTAACCCTTATG
106008 TGCTTCTGTG
Statistics
Matches: 40, Mismatches: 13, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
20 2 0.05
21 36 0.90
22 2 0.05
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.41
Consensus pattern (21 bp):
TTTAACCCTTATGGGTTTCCA
Found at i:107066 original size:26 final size:25
Alignment explanation
Indices: 107029--107111 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 25
107019 TGATACAAAT
*
107029 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-CA
107055 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATG-TTCA
107081 TGATAATGGGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTCA
107106 TGATAA
1 TGATAA
107112 GAATTTCATG
Statistics
Matches: 55, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
25 10 0.18
26 43 0.78
27 2 0.04
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (25 bp):
TGATAATGGGTTAGGTAAATGTTCA
Found at i:114345 original size:19 final size:19
Alignment explanation
Indices: 114295--114349 Score: 94
Period size: 18 Copynumber: 2.9 Consensus size: 19
114285 ATAATCTTCA
114295 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
114314 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
114332 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
114350 AGATATGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
18 18 0.53
19 16 0.47
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:114853 original size:17 final size:17
Alignment explanation
Indices: 114833--114893 Score: 56
Period size: 17 Copynumber: 3.5 Consensus size: 17
114823 CCAATATATT
114833 TTATATTTTTTATATAA
1 TTATATTTTTTATATAA
*
114850 TTAT-TATTCTTATA-AA
1 TTATAT-TTTTTATATAA
114866 -TATATTTTTTTATTATATA
1 TTATA-TTTTTTA-TATA-A
114885 TTATATTTT
1 TTATATTTT
114894 AAATTTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 12
0.71 0.04 0.24
Matches are distributed among these distances:
15 3 0.09
16 8 0.23
17 14 0.40
18 1 0.03
19 5 0.14
20 4 0.11
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.66
Consensus pattern (17 bp):
TTATATTTTTTATATAA
Found at i:114883 original size:15 final size:15
Alignment explanation
Indices: 114834--114886 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 15
114824 CAATATATTT
114834 TATATTTTTTATATAA
1 TATATTTTTT-TATAA
*
114850 T-TATTATTCTTATAAA
1 TATATT-TTTTTAT-AA
*
114866 TATATTTTTTTATTA
1 TATATTTTTTTATAA
114881 TATATT
1 TATATT
114887 ATATTTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
15 14 0.45
16 13 0.42
17 4 0.13
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (15 bp):
TATATTTTTTTATAA
Found at i:114894 original size:17 final size:17
Alignment explanation
Indices: 114827--114894 Score: 61
Period size: 16 Copynumber: 3.9 Consensus size: 17
114817 TCTAAACCAA
*
114827 TATATTTTATATTTT-T
1 TATATATTATATTTTAT
114843 TATATAATTATTATTCTTAT
1 TATAT-ATTA-TATT-TTAT
*
114863 AAATATATT-T-TTTTAT
1 -TATATATTATATTTTAT
114879 TATATATTATATTTTA
1 TATATATTATATTTTA
114895 AATTTATTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 13
0.72 0.05 0.22
Matches are distributed among these distances:
15 7 0.17
16 10 0.24
17 10 0.24
18 5 0.12
19 2 0.05
20 4 0.10
21 4 0.10
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (17 bp):
TATATATTATATTTTAT
Found at i:121667 original size:44 final size:44
Alignment explanation
Indices: 121528--121702 Score: 142
Period size: 44 Copynumber: 4.0 Consensus size: 44
121518 AAGAAACAAG
* * * *
121528 ATTTGGCATCCCTGTGTTTATAGGGAACAGAACGAAGATAGCAG
1 ATTTGGCATCCCTGTGTTCATAGAGAACAGATCGAAGATAGCAA
* * * * * * ** *
121572 ATCTGACATTCCTGTGCTT-ACAGCGAAGCAGATTGAAGATTTCAGC
1 ATTTGGCATCCCTGTG-TTCATAGAGAA-CAGATCGAAGATAGCA-A
* *
121618 A--TGGCATCCCTGTGTTCATAGGGAAC-GAGTTGAAGATAGCAA
1 ATTTGGCATCCCTGTGTTCATAGAGAACAGA-TCGAAGATAGCAA
*
121660 ATTTGGCATCCCTGTGTTTATAGAGAACAGATCGAAGATAGCA
1 ATTTGGCATCCCTGTGTTCATAGAGAACAGATCGAAGATAGCA
121703 GATCTAACCT
Statistics
Matches: 103, Mismatches: 20, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
42 3 0.03
43 13 0.13
44 70 0.68
45 16 0.16
46 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (44 bp):
ATTTGGCATCCCTGTGTTCATAGAGAACAGATCGAAGATAGCAA
Found at i:121858 original size:121 final size:121
Alignment explanation
Indices: 121697--121916 Score: 359
Period size: 121 Copynumber: 1.8 Consensus size: 121
121687 CAGATCGAAG
* * *
121697 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTATGT
1 ATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGATTTGGCATCCTTATGC
*
121762 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTTAGACAC
66 TTACAAGGAACAAATCGAAGACATAGCAGATTTGACTCTCAGATGTTCTTAGACAC
* * *
121818 ATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGATTTGGCATCCTTATGC
* *
121883 TTACAAGGAGCAAATCGAAGACATAGCTGATTTG
66 TTACAAGGAACAAATCGAAGACATAGCAGATTTG
121917 GCTTTCACGT
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
121 90 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (121 bp):
ATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGATTTGGCATCCTTATGC
TTACAAGGAACAAATCGAAGACATAGCAGATTTGACTCTCAGATGTTCTTAGACAC
Found at i:122157 original size:83 final size:83
Alignment explanation
Indices: 122064--122616 Score: 930
Period size: 83 Copynumber: 6.7 Consensus size: 83
122054 AAAGTAGATC
*
122064 CAAGATGGTTTGGCATCCTTATGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCT-A
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
122128 GGATGTTCTCAAACAGACT
66 -GATGTTCTCAAACAGACT
* *
122147 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATGGCAGATTAGACTCTCG
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
122212 GATGTTCTCAAACAGACT
66 GATGTTCTCAAACAGACT
*
122230 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCG
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
*
122295 GATGTTCTCAAACAGATT
66 GATGTTCTCAAACAGACT
* * *
122313 TAAGATGGTTTGGCGTTCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
122378 GATGTTCTCAAACAGACT
66 GATGTTCTCAAACAGACT
*
122396 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
122461 GATGTTCTCAAACAGACT
66 GATGTTCTCAAACAGACT
* * ** *
122479 CAAGATGATTTGGCATTCTTGTGCTTACAAAAAACAAATCGAGGACATAGCAGATTTGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
122544 GATGTTCTCAAACAGACT
66 GATGTTCTCAAACAGACT
* * *
122562 TAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGA-GACATAGCTGATT
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATT
122617 TGGCTTTCAC
Statistics
Matches: 446, Mismatches: 23, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
82 12 0.03
83 434 0.97
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
GATGTTCTCAAACAGACT
Found at i:123432 original size:35 final size:35
Alignment explanation
Indices: 123386--123543 Score: 255
Period size: 35 Copynumber: 4.5 Consensus size: 35
123376 ATAATCTTCA
123386 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
*
123422 ATGATTGCAATATTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
123457 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
* *
123492 ATGATTGCAATCTTAGATATGATA-TACCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
*
123526 ATGATATACAATCTTAGA
1 ATGAT-TGCAATCTTAGA
123544 AGATATGATT
Statistics
Matches: 116, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
34 13 0.11
35 98 0.84
36 5 0.04
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:123524 original size:16 final size:16
Alignment explanation
Indices: 123503--123534 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
123493 TGATTGCAAT
123503 CTTAGATATGATATAC
1 CTTAGATATGATATAC
123519 CTTAGATATGATATAC
1 CTTAGATATGATATAC
123535 AATCTTAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (16 bp):
CTTAGATATGATATAC
Found at i:123535 original size:53 final size:53
Alignment explanation
Indices: 123386--123543 Score: 191
Period size: 53 Copynumber: 3.0 Consensus size: 53
123376 ATAATCTTCA
* * *
123386 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGAT-TGCAATATTAGAT
1 ATGAT-TGCAATCTTAGATATGATA-TATCTTAGATATGATATACAATCTTAGAT
*
123440 ATGA-TACAATCTTAGATATGAT-TGCAATCTTAGATATG--ATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATAT---ATCTTAGATATGATATACAATCTTAGAT
*
123492 ATGATTGCAATCTTAGATATGATATACCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATGATATATCTTAGATATGATATACAATCTTAGA
123544 AGATATGATT
Statistics
Matches: 90, Mismatches: 6, Indels: 17
0.80 0.05 0.15
Matches are distributed among these distances:
51 11 0.12
52 32 0.36
53 42 0.47
54 5 0.06
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.37
Consensus pattern (53 bp):
ATGATTGCAATCTTAGATATGATATATCTTAGATATGATATACAATCTTAGAT
Found at i:131970 original size:42 final size:42
Alignment explanation
Indices: 131920--132004 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
131910 TTAAGTTTGG
131920 TATATTTTAGAGGATGATTTGTATCATTAATAATTTGTTTAA
1 TATATTTTAGAGGATGATTTGTATCATTAATAATTTGTTTAA
*
131962 TATATTTTAGAGGATGATTTGTATCATTAATAATTTTTTTAA
1 TATATTTTAGAGGATGATTTGTATCATTAATAATTTGTTTAA
132004 T
1 T
132005 TTATATATAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.02, G:0.13, T:0.52
Consensus pattern (42 bp):
TATATTTTAGAGGATGATTTGTATCATTAATAATTTGTTTAA
Found at i:132489 original size:3 final size:3
Alignment explanation
Indices: 132481--132524 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
132471 TAATATCCCT
*
132481 TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
132525 TGATGTTACT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:132708 original size:33 final size:33
Alignment explanation
Indices: 132671--132775 Score: 147
Period size: 33 Copynumber: 3.2 Consensus size: 33
132661 AATTAGACAG
* * *
132671 ATAATTAAAGCTTAGATACATTGTTTTCGTATT
1 ATAATTACAGCTTACATACATTGTTTTCATATT
* *
132704 ATAATTGCAGCTTACATACATTGTTTTCCTATT
1 ATAATTACAGCTTACATACATTGTTTTCATATT
* *
132737 ATAATTACAGCTTATATACATTGTTTTTATATT
1 ATAATTACAGCTTACATACATTGTTTTCATATT
132770 ATAATT
1 ATAATT
132776 TTTTTTAAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 64 1.00
ACGTcount: A:0.32, C:0.11, G:0.09, T:0.48
Consensus pattern (33 bp):
ATAATTACAGCTTACATACATTGTTTTCATATT
Found at i:132991 original size:42 final size:42
Alignment explanation
Indices: 132915--132995 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
132905 TAATTGACTT
* * *
132915 TATCACAATTTAAACACGACATATTTAAAGTGATTGCAAACA
1 TATCACAATTCAAACACGACATATCTAAAATGATTGCAAACA
132957 TATCACAATTCAAACACGACATA-CTAAGAATGATTGCAA
1 TATCACAATTCAAACACGACATATCTAA-AATGATTGCAA
132996 GCACTTAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
41 3 0.09
42 32 0.91
ACGTcount: A:0.46, C:0.19, G:0.10, T:0.26
Consensus pattern (42 bp):
TATCACAATTCAAACACGACATATCTAAAATGATTGCAAACA
Found at i:134528 original size:18 final size:18
Alignment explanation
Indices: 134502--134541 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
134492 TTGAGAAATT
* *
134502 AGAATATGATAGAAATGA
1 AGAAGATGAGAGAAATGA
*
134520 AGAAGATGAGGGAAATGA
1 AGAAGATGAGAGAAATGA
134538 AGAA
1 AGAA
134542 TTTTATGCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.55, C:0.00, G:0.30, T:0.15
Consensus pattern (18 bp):
AGAAGATGAGAGAAATGA
Found at i:145840 original size:42 final size:40
Alignment explanation
Indices: 145772--145860 Score: 106
Period size: 42 Copynumber: 2.2 Consensus size: 40
145762 TTGAAATCGA
* * * *
145772 TTTTTATTTAAAAAAGAATAATAGGAGTCATCACCGATCC
1 TTTTTATTTAAAAAAAAAGAATAGGAGTCACCACCAATCC
* *
145812 TTTTTATTTAAAAAAAAAAAGAATAGGAGTCGCCACCAATCT
1 TTTTTATTT--AAAAAAAAAGAATAGGAGTCACCACCAATCC
145854 TTTTTAT
1 TTTTTAT
145861 GATGTGAGAT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
40 9 0.22
42 32 0.78
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.35
Consensus pattern (40 bp):
TTTTTATTTAAAAAAAAAGAATAGGAGTCACCACCAATCC
Found at i:148410 original size:5 final size:5
Alignment explanation
Indices: 148400--148527 Score: 256
Period size: 5 Copynumber: 25.6 Consensus size: 5
148390 NNNNNNNNNN
148400 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
148450 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
148500 TAATA TAATA TAATA TAATA TAATA TAA
1 TAATA TAATA TAATA TAATA TAATA TAA
148528 AGCATAAAAA
Statistics
Matches: 123, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 123 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:149511 original size:20 final size:21
Alignment explanation
Indices: 149486--149525 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
149476 TTTTATATAA
*
149486 TTATTTTAT-TAATATTATTG
1 TTATTTTATAAAATATTATTG
149506 TTATTTTATAAAATATTATT
1 TTATTTTATAAAATATTATT
149526 TTTTCGCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (21 bp):
TTATTTTATAAAATATTATTG
Found at i:149561 original size:15 final size:15
Alignment explanation
Indices: 149541--149635 Score: 65
Period size: 15 Copynumber: 6.3 Consensus size: 15
149531 GCATTCTTAT
149541 TTATA-TATTATATTA
1 TTATATTATTATA-TA
149556 TTATATTATT-TAT-
1 TTATATTATTATATA
149569 TTATATATACTTATATA
1 TTATAT-TA-TTATATA
149586 CTT-TCA-TATTATATA
1 -TTAT-ATTATTATATA
*
149601 TTATAATTATTTTATA
1 TTAT-ATTATTATATA
* * *
149617 TTATGTCATTTTATA
1 TTATATTATTATATA
149632 TTAT
1 TTAT
149636 TACGTTTTTA
Statistics
Matches: 67, Mismatches: 4, Indels: 18
0.75 0.04 0.20
Matches are distributed among these distances:
13 6 0.09
14 5 0.07
15 31 0.46
16 21 0.31
17 1 0.01
18 3 0.04
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (15 bp):
TTATATTATTATATA
Found at i:149597 original size:25 final size:23
Alignment explanation
Indices: 149544--149636 Score: 79
Period size: 23 Copynumber: 4.0 Consensus size: 23
149534 TTCTTATTTA
149544 TATATTATAT-TATTATATTATT
1 TATATTATATATATTATATTATT
149566 TAT-TTATATATACTTATA-TACTT
1 TATATTATATATA-TTATATTA-TT
149589 TCATA-T-TATATATTATAATTATTT
1 T-ATATTATATATATTAT-ATTA-TT
* *
149613 TATATTATGTCATTTTATATTATT
1 TATATTATAT-ATATTATATTATT
149637 ACGTTTTTAT
Statistics
Matches: 58, Mismatches: 3, Indels: 18
0.73 0.04 0.23
Matches are distributed among these distances:
21 6 0.10
22 11 0.19
23 18 0.31
24 11 0.19
25 6 0.10
26 6 0.10
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.60
Consensus pattern (23 bp):
TATATTATATATATTATATTATT
Found at i:150016 original size:20 final size:19
Alignment explanation
Indices: 149977--150018 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
149967 ATATATTGCA
* *
149977 TATTAAATACTATTTTTAT
1 TATTAAATACCATGTTTAT
149996 TATTAAATACCATAGTTTAT
1 TATTAAATACCAT-GTTTAT
150016 TAT
1 TAT
150019 ACGAATATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.52
Consensus pattern (19 bp):
TATTAAATACCATGTTTAT
Found at i:151527 original size:3 final size:3
Alignment explanation
Indices: 151510--151581 Score: 63
Period size: 3 Copynumber: 24.0 Consensus size: 3
151500 CAAAACACAA
* * * * * *
151510 AAT AAT AAC ATT AAT AAT AAT AAT AAT AAT AAT AAT GAT GAT GAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
151558 GAT AAG AAT AAT ATT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT
151582 GTGGTCACAA
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.57, C:0.01, G:0.08, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:156396 original size:20 final size:20
Alignment explanation
Indices: 156371--156420 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
156361 AGTCCTCAAG
*
156371 GTATCGGTAGCACTTTGGTT
1 GTATCGGTAGCACTTTAGTT
*
156391 GTATCGGTAACACTTTAGTT
1 GTATCGGTAGCACTTTAGTT
156411 GTATCGGTAG
1 GTATCGGTAG
156421 ATCGAACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.20, C:0.14, G:0.28, T:0.38
Consensus pattern (20 bp):
GTATCGGTAGCACTTTAGTT
Found at i:157405 original size:10 final size:10
Alignment explanation
Indices: 157388--157417 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
157378 AAAACTGTTG
157388 TATATTGTAT
1 TATATTGTAT
*
157398 TGTATTGTAT
1 TATATTGTAT
157408 TATATTGTAT
1 TATATTGTAT
157418 GCATCTAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60
Consensus pattern (10 bp):
TATATTGTAT
Found at i:159491 original size:25 final size:24
Alignment explanation
Indices: 159444--159665 Score: 199
Period size: 23 Copynumber: 9.2 Consensus size: 24
159434 TATTACTATC
*
159444 ATTTCTAATATATA-TATCGTATAT
1 ATTTTTAATATATATTAT-GTATAT
*
159468 GTTTTT-ATATATATTATGTATAT
1 ATTTTTAATATATATTATGTATAT
159491 ATTTTTAATAT-TATTA-GTTATAT
1 ATTTTTAATATATATTATG-TATAT
* *
159514 ATTTTTTAT-TCTATTTCATGTATAT
1 ATTTTTAATATATA-TT-ATGTATAT
*
159539 ATTTTT-ATATTATCTTATGTATAT
1 ATTTTTAATA-TATATTATGTATAT
*
159563 ATTTTTTTAATAACTATATTATGTATTT
1 A--TTTTTAAT-A-TATATTATGTATAT
* *
159591 ATTTTTAACACTATATTATGTACAT
1 ATTTTTAATA-TATATTATGTATAT
* *
159616 ACTTTTAATAT-TATTATGTATTT
1 ATTTTTAATATATATTATGTATAT
*
159639 ATGTTTAATATATA-TATGTATAT
1 ATTTTTAATATATATTATGTATAT
159662 ATTT
1 ATTT
159666 ATGTAGTATT
Statistics
Matches: 164, Mismatches: 20, Indels: 29
0.77 0.09 0.14
Matches are distributed among these distances:
22 2 0.01
23 68 0.41
24 27 0.16
25 36 0.22
26 15 0.09
27 2 0.01
28 14 0.09
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (24 bp):
ATTTTTAATATATATTATGTATAT
Found at i:159544 original size:26 final size:24
Alignment explanation
Indices: 159463--159571 Score: 93
Period size: 24 Copynumber: 4.5 Consensus size: 24
159453 ATATATATCG
* *
159463 TATATGTTTTTATATATATTATGTA
1 TATATTTTTTTAT-TATCTTATGTA
*
159488 TATATTTTTAATATTA--TTA-GT-
1 TATATTTTT-TTATTATCTTATGTA
159509 TATATATTTTTTATTCTAT-TTCATGTA
1 TATAT-TTTTTTA-T-TATCTT-ATGTA
*
159536 TATATTTTTATATTATCTTATGTA
1 TATATTTTTTTATTATCTTATGTA
159560 TATATTTTTTTA
1 TATATTTTTTTA
159572 ATAACTATAT
Statistics
Matches: 70, Mismatches: 5, Indels: 19
0.74 0.05 0.20
Matches are distributed among these distances:
21 7 0.10
22 7 0.10
23 5 0.07
24 21 0.30
25 14 0.20
26 11 0.16
27 5 0.07
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.63
Consensus pattern (24 bp):
TATATTTTTTTATTATCTTATGTA
Found at i:159793 original size:32 final size:31
Alignment explanation
Indices: 159740--159803 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 31
159730 CTGTATTATT
* * *
159740 TATATATTTTTTCTTACATATTATCTTATGTA
1 TATATATATTTTCTAACATATTAT-GTATGTA
159772 TATATATATTTT-TAACTATATTATGTATGTA
1 TATATATATTTTCTAAC-ATATTATGTATGTA
159803 T
1 T
159804 TTTTAACGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 10 0.36
32 18 0.64
ACGTcount: A:0.31, C:0.06, G:0.05, T:0.58
Consensus pattern (31 bp):
TATATATATTTTCTAACATATTATGTATGTA
Found at i:159808 original size:23 final size:24
Alignment explanation
Indices: 159778--159823 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
159768 TGTATATATA
159778 TATTTTTAA-CTATATTATGTATG
1 TATTTTTAACCTATATTATGTATG
159801 TATTTTTAACGCTATATTATGTA
1 TATTTTTAAC-CTATATTATGTA
159824 CACTTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 9 0.43
25 12 0.57
ACGTcount: A:0.30, C:0.07, G:0.09, T:0.54
Consensus pattern (24 bp):
TATTTTTAACCTATATTATGTATG
Found at i:159840 original size:25 final size:26
Alignment explanation
Indices: 159786--159840 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
159776 TATATTTTTA
**
159786 ACTATATTATGTATGTATTTTTAACG
1 ACTATATTATGTAACTATTTTTAACG
159812 -CTATATTATGTACACT-TTTTTAA-G
1 ACTATATTATGTA-ACTATTTTTAACG
159836 ACTAT
1 ACTAT
159841 GTATATACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 1 0.04
25 23 0.92
26 1 0.04
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.49
Consensus pattern (26 bp):
ACTATATTATGTAACTATTTTTAACG
Found at i:172088 original size:77 final size:77
Alignment explanation
Indices: 171984--173109 Score: 617
Period size: 77 Copynumber: 13.9 Consensus size: 77
171974 ATGTTTTAAT
* * * *
171984 TTCTATTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGTCACATGCCAA
1 TTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGA
172047 GGTATTTTCAAA
66 GGTATTTTCAAA
* * * * *
172059 TTCTATTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTTACAAGTCGA
1 TTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGA
*
172124 GGTATTTTCAAT
66 GGTATTTTCAAA
* *
172136 TTCTGTTTTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGG
1 TTC------T--A--T-T-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
* *
172201 GTCACATGCCAAGGTATTTTCAAA
54 GTCACACGCCGAGGTATTTTCAAA
* * * * *
172225 TTCTATTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTTACAAGTCGA
1 TTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGA
*
172290 GGTATTTTCAAT
66 GGTATTTTCAAA
172302 TTCTGTTTTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
1 TTC------T--A--T-T-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
* *
172367 GTCACATGCTGAGGTATTTTC-AA
54 GTCACACGCCGAGGTATTTTCAAA
* * * * * *
172390 TTCCTGTTTTT--TAAAAGTCAACTCGTATTGCGAGAAGTGAGTT-AGCCTCAGGTCACACACCG
1 TT-CTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCG
*
172452 AGGTATTTTTAATTTCTA
65 AGGTATTTTCAA-----A
* * *
172470 TTTTCCAATTTATATTTCAAAAAAAATCAACTCATTTTGCGATAGGTGAGTTGAGCCTCAGGTCA
1 --TT-C----TATTTTTCAA-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
* * *
172535 CACACTGAGGTATCTTC-AA
58 CACGCCGAGGTATTTTCAAA
* * * *
172554 TTCCTGCTTTTT---AAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCC
1 TT-CT-ATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCC
*
172616 GAGGTATTTTCAAT
64 GAGGTATTTTCAAA
* * * ** * * * *
172630 TTTTGTTTTTCAAAAATATCAACTCATATTGCGAGAAATGAGTTTAGTCTCAGGTCACACGCTGT
1 TTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGA
172695 GGTATTTTC-AA
66 GGTATTTTCAAA
** * * * * *
172706 TTCT-TGTTTT-TTAAAAGTCAACTCGTATTGCAAAAGGTGAGTTGAGCCTCAGG--ACACGCTG
1 TTCTAT-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCG
*
172767 AGGTATTTTCAAT
65 AGGTATTTTCAAA
* * * * * * *
172780 TTCTGTTTTTTCAATTTATGTCTTTTAAAA--AAATCA-ACT-C-ATATTGCGAGAGGTGAG-TT
1 TTCT-ATTTTTCAA---A--------AAAATCAACTCATATTGCGAGA--G-GTGAGTTGAGCCT
* * * * *
172839 AAGCCTCAGGACACGCTGAGGTATTTTTAAT
51 CAG-GTC---ACACGCCGAGGTATTTTCAAA
* * * * *
172870 TTCTGTTTTTC--AAAAATTAACTCATACTGCGAGAGGTGAGTTGAGCCTC-GGATCACATGCTG
1 TTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACACGCCG
172932 AGGTATTTTCAAA
65 AGGTATTTTCAAA
* * *
172945 TTCTATTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGTTGAGTTGAGCCTCGGG
1 TTCTATTTTTCA---A--------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* **
173010 TCACACGCTGAGGTATTTTCTATT
55 TCACACGCCGAGGTATTTTC-AAA
** * * **
173034 TTCGCTTCTTATATAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCACATAC
1 TTCTATT-TT-T-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGC
*
173099 TGAGGTATTTT
63 CGAGGTATTTT
173110 TAGTTTTTTA
Statistics
Matches: 827, Mismatches: 126, Indels: 190
0.72 0.11 0.17
Matches are distributed among these distances:
73 17 0.02
74 35 0.04
75 158 0.19
76 16 0.02
77 180 0.22
78 19 0.02
79 12 0.01
80 2 0.00
81 58 0.07
82 10 0.01
83 5 0.01
84 8 0.01
85 14 0.02
86 5 0.01
87 5 0.01
88 59 0.07
89 170 0.21
90 52 0.06
91 1 0.00
92 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (77 bp):
TTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGA
GGTATTTTCAAA
Found at i:172147 original size:14 final size:14
Alignment explanation
Indices: 172128--172157 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
172118 AGTCGAGGTA
172128 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
172142 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
172156 TT
1 TT
172158 CAAAAAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.07, T:0.67
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:172216 original size:89 final size:89
Alignment explanation
Indices: 172066--172400 Score: 460
Period size: 89 Copynumber: 3.9 Consensus size: 89
172056 AAATTCTATT
* *
172066 TTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTTACAAGTCGAGGTATTT
1 TTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACAAGCCGAGGTATTT
172131 TCAATTTCTGTTTTTCAATTTCTG
66 TCAATTTCTGTTTTTCAATTTCTG
* * * *
172155 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGTCACATGCCAAGGTATTT
1 TTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACAAGCCGAGGTATTT
*
172220 TCAAATTC------T--A--T-T-
66 TCAATTTCTGTTTTTCAATTTCTG
* *
172232 TTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTTACAAGTCGAGGTATTT
1 TTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACAAGCCGAGGTATTT
172297 TCAATTTCTGTTTTTCAATTTCTG
66 TCAATTTCTGTTTTTCAATTTCTG
* * * *
172321 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCTGAGGTATTT
1 TTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACAAGCCGAGGTATTT
*
172386 TCAATTCCTGTTTTT
66 TCAATTTCTGTTTTT
172401 TAAAAGTCAA
Statistics
Matches: 213, Mismatches: 21, Indels: 24
0.83 0.08 0.09
Matches are distributed among these distances:
77 66 0.31
78 1 0.00
79 1 0.00
81 1 0.00
83 2 0.01
85 1 0.00
87 1 0.00
88 1 0.00
89 139 0.65
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (89 bp):
TTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACAAGCCGAGGTATTT
TCAATTTCTGTTTTTCAATTTCTG
Found at i:172255 original size:166 final size:164
Alignment explanation
Indices: 171995--173109 Score: 1161
Period size: 166 Copynumber: 6.8 Consensus size: 164
171985 TCTATTTTTC
* * * **
171995 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGTCACATGCCAAGGTATTTTCAAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAAAT
* * *
172060 TCTATTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTTACAAGTCGAG
66 TCTATTTTT--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACAAGTCGAG
*
172125 GTATTTTCAATTTCTGTTTTTCAATTTCTGTTTCAA
129 GTATTTTCAATTTCTGTTTTTCAATTTATGTTTCAA
* * * **
172161 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGTCACATGCCAAGGTATTTTCAAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAAAT
* * *
172226 TCTATTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTTACAAGTCGAG
66 TCTATTTTT--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACAAGTCGAG
*
172291 GTATTTTCAATTTCTGTTTTTCAATTTCTGTTTCAA
129 GTATTTTCAATTTCTGTTTTTCAATTTATGTTTCAA
*
172327 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCTGAGGTATTTTC-AAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAAAT
* * * * * *
172391 TCCTGTTTTTTAAAAGTCAACTCGTATTGCGAGAAGTGAGTT-AGCCTCAGGTCACACA-CCGAG
66 T-CTATTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA-AGTCGAG
* * * *
172454 GTATTTTTAATTTCTATTTTCCAATTTATATTTCAAA
129 GTATTTTCAATTTCTGTTTTTCAATTTATGTTTC-AA
* * * *
172491 AAAAATCAACTCATTTTGCGATAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTATCTTC-AAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAAAT
* * * * * *
172555 TCCTGCTTTTT-AAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAG
66 T-CT-ATTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACAAGTCGAG
*
172619 GTATTTTCAA-------TTTT---TGT-T-TTTCAA
129 GTATTTTCAATTTCTGTTTTTCAATTTATGTTTCAA
* ** * * *
172643 AAATATCAACTCATATTGCGAGAAATGAGTTTAGTCTCAGGTCACACGCTGTGGTATTTTC-AAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAAAT
* * * * * * *
172707 TCTTGTTTTTTAAAAGTCAACTCGTATTGCAAAAGGTGAGTTGAGCCTCAGG--ACACG-CTGAG
66 TC-TATTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACAAGTC-GAG
*
172769 GTATTTTCAATTTCTGTTTTTTCAATTTATGTCTTTTAA
129 GTATTTTCAATTTCTG-TTTTTCAATTTATG--TTTCAA
* * *
172808 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG--ACACGCTGAGGTATTTTTAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAAAT
* * * * *
172871 TCTGTTTTTCAAAAATTAACTCATACTGCGAGAGGTGAGTTGAGCCTC-GGATCACATG-CTGAG
66 TCTATTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACAAGTC-GAG
* * ***
172934 GTATTTTCAAATTCTATTTTT-AATTTATGTTTTTC
129 GTATTTTCAATTTCTGTTTTTCAATTTATGTTTCAA
* * **
172969 AAAAATCAACTCATATTGCGAGAGTTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTCTATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTC-AAA
*
173034 TTCGCT-TCTTATATAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCACATA
65 TT--CTAT-TT-T-T-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA-A
*
173098 CT-GAGGTATTTT
123 GTCGAGGTATTTT
173110 TAGTTTTTTA
Statistics
Matches: 832, Mismatches: 77, Indels: 77
0.84 0.08 0.08
Matches are distributed among these distances:
149 1 0.00
150 18 0.02
151 6 0.01
152 96 0.12
153 4 0.00
154 1 0.00
155 2 0.00
158 7 0.01
161 44 0.05
162 3 0.00
163 125 0.15
164 135 0.16
165 102 0.12
166 234 0.28
167 1 0.00
168 1 0.00
169 50 0.06
170 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (164 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAAAT
TCTATTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACAAGTCGAGGT
ATTTTCAATTTCTGTTTTTCAATTTATGTTTCAA
Found at i:172313 original size:14 final size:14
Alignment explanation
Indices: 172294--172323 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
172284 AGTCGAGGTA
172294 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
172308 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
172322 TT
1 TT
172324 CAAAAAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.07, T:0.67
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:172431 original size:75 final size:75
Alignment explanation
Indices: 172308--172465 Score: 210
Period size: 75 Copynumber: 2.1 Consensus size: 75
172298 CAATTTCTGT
* *** *
172308 TTTTCAATTTCTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA
1 TTTTCAATTCCTGTTTTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACA
*
172373 TGCTGAGGTA
66 CGCTGAGGTA
* *
172383 TTTTCAATTCCTGTTTTTTAAAAGTCAACTCGTATTGCGAGAAGTGAGTT-AGCCTCAGGTCACA
1 TTTTCAATTCCTGTTTTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACA
* *
172447 CACCGAGGTA
66 CGCTGAGGTA
*
172457 TTTTTAATT
1 TTTTCAATT
172466 TCTATTTTCC
Statistics
Matches: 72, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
74 29 0.40
75 43 0.60
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35
Consensus pattern (75 bp):
TTTTCAATTCCTGTTTTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACA
CGCTGAGGTA
Found at i:172620 original size:75 final size:75
Alignment explanation
Indices: 172491--172790 Score: 361
Period size: 75 Copynumber: 4.0 Consensus size: 75
172481 ATATTTCAAA
* * * *
172491 AAAAATCAACTCATTTTGCGATAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTATCTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAATT
*
172556 CCTGCTTTTT
66 CCTGTTTTTT
* * * *
172566 AAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAATT
** *
172631 TTTGTTTTTCA
66 CCTGTTTTT-T
** * * *
172642 AAAATATCAACTCATATTGCGAGAAATGAGTTTAGTCTCAGGTCACACGCTGTGGTATTTTCAAT
1 AAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAAT
*
172707 TCTTGTTTTTT
65 TCCTGTTTTTT
* * * *
172718 AAAAGTCAACTCGTATTGCAAAAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAATT
*
172781 TCTGTTTTTT
66 CCTGTTTTTT
172791 CAATTTATGT
Statistics
Matches: 189, Mismatches: 34, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
73 29 0.15
75 92 0.49
76 8 0.04
77 60 0.32
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTCAATT
CCTGTTTTTT
Found at i:172748 original size:152 final size:151
Alignment explanation
Indices: 172484--172789 Score: 434
Period size: 152 Copynumber: 2.0 Consensus size: 151
172474 CCAATTTATA
* * **
172484 TTTCAAAAAAAATCAACTCATTTTGCGATAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTATC
1 TTTCAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGTCACACACTGAGGTATC
* *
172549 TTCAATTCCTGCTTTTTAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG
66 TTCAATTCCTGCTTTTTAAAAGTCAACTCGTATTGCAAAAGGCGAGTTGAGCCTCAGG--ACACG
*
172614 CCGAGGTATTTTCAATTTTTGTT
129 CCGAGGTATTTTCAATTTCTGTT
* * * * * *
172637 TTTC-AAAAATATCAACTCATATTGCGAGAAATGAGTTTAGTCTCAGGTCACACGCTGTGGTATT
1 TTTCAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGTCACACACTGAGGTATC
* * * *
172701 TTCAATTCTTGTTTTTTAAAAGTCAACTCGTATTGCAAAAGGTGAGTTGAGCCTCAGGACACGCT
66 TTCAATTCCTGCTTTTTAAAAGTCAACTCGTATTGCAAAAGGCGAGTTGAGCCTCAGGACACGCC
172766 GAGGTATTTTCAATTTCTGTT
131 GAGGTATTTTCAATTTCTGTT
172787 TTT
1 TTT
172790 TCAATTTATG
Statistics
Matches: 136, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
150 29 0.21
152 103 0.76
153 4 0.03
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (151 bp):
TTTCAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGTCACACACTGAGGTATC
TTCAATTCCTGCTTTTTAAAAGTCAACTCGTATTGCAAAAGGCGAGTTGAGCCTCAGGACACGCC
GAGGTATTTTCAATTTCTGTT
Found at i:172805 original size:15 final size:15
Alignment explanation
Indices: 172772--172805 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
172762 CGCTGAGGTA
* *
172772 TTTTCAATTTCTGTT
1 TTTTCAATTTATGTC
172787 TTTTCAATTTATGTC
1 TTTTCAATTTATGTC
172802 TTTT
1 TTTT
172806 AAAAAAATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.12, G:0.06, T:0.68
Consensus pattern (15 bp):
TTTTCAATTTATGTC
Found at i:172917 original size:73 final size:74
Alignment explanation
Indices: 172808--172954 Score: 208
Period size: 73 Copynumber: 2.0 Consensus size: 74
172798 TGTCTTTTAA
* * *
172808 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGA-CAC-GCTGAGGTATTTTTAATT
1 AAAAATCAACTCATACTGCGAGAGGTGAGTTAAGCCTC-GGATCACAGCTGAGGTATTTTCAAAT
*
172871 TCTGTTTTTC
65 TCTATTTTTC
* *
172881 AAAAATTAACTCATACTGCGAGAGGTGAGTTGAGCCTCGGATCACATGCTGAGGTATTTTCAAAT
1 AAAAATCAACTCATACTGCGAGAGGTGAGTTAAGCCTCGGATCACA-GCTGAGGTATTTTCAAAT
172946 TCTATTTTT
65 TCTATTTTT
172955 AATTTATGTT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
72 3 0.05
73 38 0.58
75 24 0.37
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34
Consensus pattern (74 bp):
AAAAATCAACTCATACTGCGAGAGGTGAGTTAAGCCTCGGATCACAGCTGAGGTATTTTCAAATT
CTATTTTTC
Found at i:172937 original size:165 final size:165
Alignment explanation
Indices: 172622--173109 Score: 564
Period size: 163 Copynumber: 2.9 Consensus size: 165
172612 CGCCGAGGTA
* * * * *
172622 TTTTCAATTTTTGTTTTTCAAAAATATCAACTCATATTGCGAGAAATGAGTTTAGTCTCAGGTCA
1 TTTTCAATTTATGTTTTT-AAAAAAATCAACTCATATTGCGAGAGATGAGTTAAGCCTCAGG-CA
* * * * * * *
172687 CACGCTGTGGTATTTTCAA-TTCTTGTTTTTTAAAAGTCAACTCGTATTGCAAAAGGTGAGTTGA
64 CACGCTGAGGTATTTTTAATTTC-TGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* *
172751 GCCTCAGGA-CAC--GCTGAGGTATTTTCAATTTCTGTT
128 GCCTCAGGATCACATGCTGAGGTATTTTCAAATTCT-AT
*
172787 TTTTCAATTTATGTCTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG-AC
1 TTTTCAATTTATGT-TTTTAAAAAAATCAACTCATATTGCGAGAGATGAGTTAAGCCTCAGGCAC
* * *
172851 ACGCTGAGGTATTTTTAATTTCTGTTTTTCAAAAATTAACTCATACTGCGAGAGGTGAGTTGAGC
65 ACGCTGAGGTATTTTTAATTTCTGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
172916 CTC-GGATCACATGCTGAGGTATTTTCAAATTCTAT
130 CTCAGGATCACATGCTGAGGTATTTTCAAATTCTAT
* * * *
172951 TTTT-AATTTATGTTTTT-CAAAAATCAACTCATATTGCGAGAGTTGAGTTGAGCCTCGGGTCAC
1 TTTTCAATTTATGTTTTTAAAAAAATCAACTCATATTGCGAGAGATGAGTTAAGCCTCAGG-CAC
* *
173014 ACGCTGAGGTATTTTCTATTTTC-GCTTCTTATATAAAAAAATCAACTCATATTACGAGAGGTGA
65 ACGCTGAGGTATTTT-TAATTTCTG--T-TT-T-T-AAAAAATCAACTCATATTGCGAGAGGTGA
*
173078 GTTGAGCCTCAGG-TCACATACTGAGGTATTTT
123 GTTGAGCCTCAGGATCACATGCTGAGGTATTTT
173110 TAGTTTTTTA
Statistics
Matches: 281, Mismatches: 27, Indels: 26
0.84 0.08 0.08
Matches are distributed among these distances:
161 38 0.14
162 7 0.02
163 87 0.31
164 14 0.05
165 72 0.26
166 6 0.02
167 1 0.00
168 1 0.00
169 53 0.19
170 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (165 bp):
TTTTCAATTTATGTTTTTAAAAAAATCAACTCATATTGCGAGAGATGAGTTAAGCCTCAGGCACA
CGCTGAGGTATTTTTAATTTCTGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
TCAGGATCACATGCTGAGGTATTTTCAAATTCTAT
Found at i:172965 original size:88 final size:88
Alignment explanation
Indices: 172860--173029 Score: 286
Period size: 88 Copynumber: 1.9 Consensus size: 88
172850 CACGCTGAGG
* *
172860 TATTTTTAATTTCTGTTTTTCAAAAATTAACTCATACTGCGAGAGGTGAGTTGAGCCTCGGATCA
1 TATTTTTAATTTATGTTTTTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCGGATCA
*
172925 CATGCTGAGGTATTTTCAAATTC
66 CACGCTGAGGTATTTTCAAATTC
* * *
172948 TATTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGTTGAGTTGAGCCTCGGGTCA
1 TATTTTTAATTTATGTTTTTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCGGATCA
173013 CACGCTGAGGTATTTTC
66 CACGCTGAGGTATTTTC
173030 TATTTTCGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 76 1.00
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (88 bp):
TATTTTTAATTTATGTTTTTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCGGATCA
CACGCTGAGGTATTTTCAAATTC
Found at i:173301 original size:44 final size:45
Alignment explanation
Indices: 173219--173313 Score: 156
Period size: 44 Copynumber: 2.1 Consensus size: 45
173209 GAATAAAGGT
*
173219 TGGAGCTGATCGAAGACACCAGATTTTTCCTCCCTGAAGTTGCAG
1 TGGAGCTGATCGAAGACACCAGATTTTGCCTCCCTGAAGTTGCAG
* *
173264 TGGAGCTGATCGAAGATA-CATATTTTGCCTCCCTGAAGTTGCAG
1 TGGAGCTGATCGAAGACACCAGATTTTGCCTCCCTGAAGTTGCAG
173308 TGGAGC
1 TGGAGC
173314 AGGTTGAAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
44 30 0.64
45 17 0.36
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (45 bp):
TGGAGCTGATCGAAGACACCAGATTTTGCCTCCCTGAAGTTGCAG
Found at i:173343 original size:44 final size:44
Alignment explanation
Indices: 173251--173406 Score: 147
Period size: 44 Copynumber: 3.5 Consensus size: 44
173241 ATTTTTCCTC
* * * *
173251 CCTGAAGTTGCAGTGGAGCTGATCGAAGATACATATTTTGC--CTC
1 CCTGAAGTTGCAGTGGAGCAGATTGAAGATACA-AGTTT-CATCTT
* *
173295 CCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTTTCATCTT
1 CCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAGTTTCATCTT
* * * *
173339 CCTGAAGTTGTAGCGGAGCAGATTGAAGATACCAGATCTCATC-T
1 CCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAG-TTTCATCTT
**
173383 CTCTGAAGTTGCAGAAGAGCAGAT
1 C-CTGAAGTTGCAGTGGAGCAGAT
173407 CACAACAAAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 63 0.68
45 25 0.27
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (44 bp):
CCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAGTTTCATCTT
Found at i:175022 original size:15 final size:14
Alignment explanation
Indices: 174995--175037 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 14
174985 ATATTATTCA
174995 TGTTATA-TATTAT
1 TGTTATACTATTAT
175008 TGTTATCACTATTAT
1 TGTTAT-ACTATTAT
* *
175023 TTTTATATTATTAT
1 TGTTATACTATTAT
175037 T
1 T
175038 ATATTATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
13 6 0.23
14 9 0.35
15 11 0.42
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.63
Consensus pattern (14 bp):
TGTTATACTATTAT
Found at i:175033 original size:11 final size:11
Alignment explanation
Indices: 175017--175059 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
175007 TTGTTATCAC
175017 TATTATTTTTA
1 TATTATTTTTA
*
175028 TATTATTATTA
1 TATTATTTTTA
*
175039 TATTATATTTA
1 TATTATTTTTA
175050 -ATTATATTTT
1 TATTAT-TTTT
175060 TTAAATGTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
10 5 0.19
11 22 0.81
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TATTATTTTTA
Found at i:175267 original size:25 final size:25
Alignment explanation
Indices: 175220--175441 Score: 200
Period size: 23 Copynumber: 9.2 Consensus size: 25
175210 TATTATTATC
*
175220 ATTTCTAATA-TATA-TATCGTATAT
1 ATTTTTAATACTATATTAT-GTATAT
*
175244 GTTTTT-ATA-TATATTATGTATAT
1 ATTTTTAATACTATATTATGTATAT
175267 ATTTTTAATA-T-TATTA-GTTATAT
1 ATTTTTAATACTATATTATG-TATAT
*
175290 ATTTTTTATACTAT-TTCATGTATAT
1 ATTTTTAATACTATATT-ATGTATAT
* *
175315 ATTTTT-ATATTATCTTATGTATAT
1 ATTTTTAATACTATATTATGTATAT
*
175339 ATTTTTTTAATAACTATATTATGTATGT
1 A--TTTTTAAT-ACTATATTATGTATAT
* *
175367 ATTTTTAACACTATATTATGTACAT
1 ATTTTTAATACTATATTATGTATAT
* *
175392 ACTTTTAATA-T-TATTATGTATTT
1 ATTTTTAATACTATATTATGTATAT
*
175415 ATCTTTAATA-TATA-TATGTATAT
1 ATTTTTAATACTATATTATGTATAT
175438 ATTT
1 ATTT
175442 ATGTAGTATT
Statistics
Matches: 166, Mismatches: 19, Indels: 27
0.78 0.09 0.13
Matches are distributed among these distances:
22 1 0.01
23 67 0.40
24 32 0.19
25 37 0.22
26 13 0.08
27 2 0.01
28 14 0.08
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (25 bp):
ATTTTTAATACTATATTATGTATAT
Found at i:175452 original size:48 final size:45
Alignment explanation
Indices: 175220--175455 Score: 172
Period size: 48 Copynumber: 4.8 Consensus size: 45
175210 TATTATTATC
* *
175220 ATTTCTAATATATATATCGTATATGTTTTTATATATATTATGTATAT
1 ATTTTTAATATATATAT-GTATATATTTTTATAT-TATTATGTATAT
*
175267 ATTTTTAATAT-TAT-TAGTTATATATTTTTTATACTATTTCATGTATAT
1 ATTTTTAATATATATAT-G-TATATA-TTTTTATATTA-TT-ATGTATAT
* *
175315 ATTTTT-ATATTATCTTATGTATATATTTTTTTAATAACTATATTATGTATGT
1 ATTTTTAATA-TAT-ATATGTATATA--TTTTT-AT-A-T-TATTATGTATAT
* * * *
175367 ATTTTTAACACTATATTATGTACATACTTTTAATATTATTATGTATTT
1 ATTTTTAATA-TATA-TATGTATATA-TTTTTATATTATTATGTATAT
*
175415 ATCTTTAATATATATATGTATATATTTATGTAGTATTATTA
1 ATTTTTAATATATATATGTATATATTT-T-TA-TATTATTA
175456 ATAGTCGTTT
Statistics
Matches: 153, Mismatches: 18, Indels: 35
0.74 0.09 0.17
Matches are distributed among these distances:
45 5 0.03
46 20 0.13
47 28 0.18
48 42 0.27
49 8 0.05
50 9 0.06
51 5 0.03
52 18 0.12
53 16 0.10
54 2 0.01
ACGTcount: A:0.33, C:0.05, G:0.06, T:0.57
Consensus pattern (45 bp):
ATTTTTAATATATATATGTATATATTTTTATATTATTATGTATAT
Found at i:175619 original size:25 final size:25
Alignment explanation
Indices: 175555--175619 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
175545 ATATATATAT
* *
175555 ATATTTTTTA-ACTATATTATGTAT
1 ATATTTTTAAGACTATATTATGTAC
*
175579 GTATTTTTAACG-CTATATTATGTAC
1 ATATTTTTAA-GACTATATTATGTAC
175604 ATATTTTTAAGACTAT
1 ATATTTTTAAGACTAT
175620 GTATATACTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
24 9 0.26
25 25 0.74
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (25 bp):
ATATTTTTAAGACTATATTATGTAC
Found at i:183931 original size:16 final size:15
Alignment explanation
Indices: 183910--183957 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
183900 GATGTGAATA
183910 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
183926 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
183941 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
183957 A
1 A
183958 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:183933 original size:24 final size:24
Alignment explanation
Indices: 183906--183961 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
183896 TAATGATGTG
*
183906 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
183930 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
183954 AATAATAA
1 AATAATAA
183962 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:183940 original size:8 final size:8
Alignment explanation
Indices: 183906--183957 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
183896 TAATGATGTG
*
183906 AATAATAA
1 AATATTAA
183914 AATATATAA
1 AATAT-TAA
183923 AATA-TAA
1 AATATTAA
183930 AATATTAA
1 AATATTAA
*
183938 AATATCAA
1 AATATTAA
*
183946 AATATTAG
1 AATATTAA
183954 AATA
1 AATA
183958 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:184124 original size:23 final size:22
Alignment explanation
Indices: 184073--184126 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
184063 ATACTACATC
184073 AATATGTACATAT-ATA--AAA
1 AATATGTACATATAATATTAAA
**
184092 AATAAATACATGATAATATTAAA
1 AATATGTACAT-ATAATATTAAA
184115 AATATGTACATA
1 AATATGTACATA
184127 ATATAGTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 9 0.33
20 2 0.07
21 3 0.11
22 1 0.04
23 12 0.44
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (22 bp):
AATATGTACATATAATATTAAA
Found at i:184173 original size:22 final size:24
Alignment explanation
Indices: 184089--184174 Score: 81
Period size: 25 Copynumber: 3.7 Consensus size: 24
184079 TACATATATA
* *
184089 AAAAATAAATACATGATAATA--TT
1 AAAAATATATACATAAT-ATAGGTT
*
184112 AAAAATATGTACATAATATAGTGTT
1 AAAAATATATACATAATATAG-GTT
*
184137 AAAAATACATACATAATATA-GTT
1 AAAAATATATACATAATATAGGTT
*
184160 -AAGATATATACATAA
1 AAAAATATATACATAA
184175 GATAACATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
22 16 0.30
23 17 0.32
25 20 0.38
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (24 bp):
AAAAATATATACATAATATAGGTT
Found at i:184231 original size:25 final size:25
Alignment explanation
Indices: 184104--184326 Score: 108
Period size: 25 Copynumber: 9.0 Consensus size: 25
184094 TAAATACATG
* *
184104 ATAATATTAAAAATATGTACATAAT
1 ATAATATTAAAGATATATACATAAT
* * * *
184129 ATAGTGTTAAAAATACATACATAAT
1 ATAATATTAAAGATATATACATAAT
* *
184154 AT-A-GTT-AAGATATATACATAAG
1 ATAATATTAAAGATATATACATAAT
* *
184176 ATAACATGTAGAAAAGTATATATATAAATAAT
1 ATAATAT-T---AAAG---ATATATACATAAT
*
184208 ATAATATTAAAGATATATACATAAA
1 ATAATATTAAAGATATATACATAAT
* * * *
184233 ATAGTATAAAATATATATACGTAAT
1 ATAATATTAAAGATATATACATAAT
* *
184258 ATAGA-ATTTAA-A-ATATACCTAAT
1 ATA-ATATTAAAGATATATACATAAT
* *
184281 AT-AT-TAAAAGA-ATATATATAAT
1 ATAATATTAAAGATATATACATAAT
* *
184303 ACAATATT-AAGAAATATA-ATAAT
1 ATAATATTAAAGATATATACATAAT
184326 A
1 A
184327 ACAAAAAAAA
Statistics
Matches: 153, Mismatches: 29, Indels: 34
0.71 0.13 0.16
Matches are distributed among these distances:
21 4 0.03
22 26 0.17
23 28 0.18
24 8 0.05
25 62 0.41
28 4 0.03
29 3 0.02
31 1 0.01
32 17 0.11
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.33
Consensus pattern (25 bp):
ATAATATTAAAGATATATACATAAT
Found at i:187318 original size:18 final size:18
Alignment explanation
Indices: 187297--187338 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
187287 AAAATATTTA
187297 TTTTAATGT-TTATAGTAT
1 TTTTAATGTATTATA-TAT
* *
187315 TTTTGATGTATTATATTT
1 TTTTAATGTATTATATAT
187333 TTTTAA
1 TTTTAA
187339 AAAATATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.64
Consensus pattern (18 bp):
TTTTAATGTATTATATAT
Found at i:189706 original size:60 final size:60
Alignment explanation
Indices: 189624--189747 Score: 142
Period size: 60 Copynumber: 2.1 Consensus size: 60
189614 AATTTCAAAG
* * ** * * *
189624 TTAGGACTAAATTGAAAGATTTTATAAATGTTGAGGGCTAAATTTATTGACTTTTTATAA
1 TTAGAACTAAAATGAAAGATTTTATAAACATTGAGAGCTAAATTTATTAAATTTTTATAA
* * *
189684 TTAGAACTAAAATGACAA-ATTTTGTAAACATTGAGAGCTAAATTTGTTAAATTTTTATAT
1 TTAGAACTAAAATGA-AAGATTTTATAAACATTGAGAGCTAAATTTATTAAATTTTTATAA
189744 TTAG
1 TTAG
189748 GATCAAATTG
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
60 51 0.96
61 2 0.04
ACGTcount: A:0.39, C:0.06, G:0.15, T:0.41
Consensus pattern (60 bp):
TTAGAACTAAAATGAAAGATTTTATAAACATTGAGAGCTAAATTTATTAAATTTTTATAA
Found at i:190626 original size:27 final size:27
Alignment explanation
Indices: 190588--190639 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
190578 GGAATTTAGA
190588 ATCTAATACTAATACTATAAAATATGT
1 ATCTAATACTAATACTATAAAATATGT
190615 ATCTAATACTAATACTATAAAATAT
1 ATCTAATACTAATACTATAAAATAT
190640 AACATATGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.50, C:0.12, G:0.02, T:0.37
Consensus pattern (27 bp):
ATCTAATACTAATACTATAAAATATGT
Found at i:196195 original size:46 final size:45
Alignment explanation
Indices: 196110--196197 Score: 108
Period size: 46 Copynumber: 1.9 Consensus size: 45
196100 CCTTAGTTTT
* * *
196110 GAATAAGTTGTGCTTTAGGAACAGCTTATCGTACGAATAAGTCCC
1 GAATAAGTTGTGCTTAAGGAACAGCTTATCATACAAATAAGTCCC
196155 GAATAAGTTGATGCTTAAGGAGA-A-CTTACTCATACAAATAAGT
1 GAATAAGTTG-TGCTTAAGGA-ACAGCTTA-TCATACAAATAAGT
196198 TTCCATGATA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
45 14 0.38
46 22 0.59
47 1 0.03
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.28
Consensus pattern (45 bp):
GAATAAGTTGTGCTTAAGGAACAGCTTATCATACAAATAAGTCCC
Found at i:201113 original size:16 final size:16
Alignment explanation
Indices: 201080--201113 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
201070 TCAAACTGTT
* *
201080 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
201096 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
201112 AA
1 AA
201114 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:203941 original size:21 final size:21
Alignment explanation
Indices: 203915--203955 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
203905 AGACGAGCAA
* *
203915 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
203936 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
203956 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:205894 original size:16 final size:16
Alignment explanation
Indices: 205861--205894 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
205851 GGAGATTGTT
* *
205861 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
205877 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
205893 AA
1 AA
205895 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:208488 original size:17 final size:17
Alignment explanation
Indices: 208466--208498 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
208456 AAAATTTTTA
*
208466 TTTAAACCCTTTTAAAT
1 TTTAAACCATTTTAAAT
208483 TTTAAACCATTTTAAA
1 TTTAAACCATTTTAAA
208499 CCAAAACCTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.45
Consensus pattern (17 bp):
TTTAAACCATTTTAAAT
Found at i:210020 original size:21 final size:22
Alignment explanation
Indices: 209994--210040 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
209984 CTCTGCTCAA
*
209994 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
210015 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
210037 ACTC
1 ACTC
210041 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:217453 original size:32 final size:32
Alignment explanation
Indices: 217393--217490 Score: 151
Period size: 32 Copynumber: 3.0 Consensus size: 32
217383 TGAATTATAA
* * *
217393 ATTTTAGAAGGATCAAATAGCAGTTTTACCAAT
1 ATTTTAAAAGG-TCATATAGCAATTTTACCAAT
*
217426 ATTTTAAAAGGTCATATGGCAATTTTACCAAT
1 ATTTTAAAAGGTCATATAGCAATTTTACCAAT
217458 ATTTTAAAAGGTCATATAGCAATTTTACCAAT
1 ATTTTAAAAGGTCATATAGCAATTTTACCAAT
217490 A
1 A
217491 ATGAATAGTA
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 50 0.83
33 10 0.17
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (32 bp):
ATTTTAAAAGGTCATATAGCAATTTTACCAAT
Found at i:220473 original size:15 final size:16
Alignment explanation
Indices: 220453--220489 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
220443 CATTTAGAAC
220453 TTTAATTTAA-TGAAG
1 TTTAATTTAATTGAAG
220468 TTTAATTTAATTGAAG
1 TTTAATTTAATTGAAG
220484 TTTAAT
1 TTTAAT
220490 GTCGCTATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (16 bp):
TTTAATTTAATTGAAG
Found at i:220803 original size:22 final size:22
Alignment explanation
Indices: 220775--220819 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
220765 GACTTAAATG
220775 CAAAACCTAAATTAATTTTGTT
1 CAAAACCTAAATTAATTTTGTT
220797 CAAAACCTAAATTAATTTTGTT
1 CAAAACCTAAATTAATTTTGTT
220819 C
1 C
220820 TTCATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (22 bp):
CAAAACCTAAATTAATTTTGTT
Found at i:221160 original size:10 final size:10
Alignment explanation
Indices: 221145--221172 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
221135 CATTTAAAAG
221145 TTTGACTTAA
1 TTTGACTTAA
221155 TTTGACTTAA
1 TTTGACTTAA
221165 TTTGACTT
1 TTTGACTT
221173 TAAATTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.25, C:0.11, G:0.11, T:0.54
Consensus pattern (10 bp):
TTTGACTTAA
Found at i:221630 original size:43 final size:43
Alignment explanation
Indices: 221569--221651 Score: 157
Period size: 43 Copynumber: 1.9 Consensus size: 43
221559 AACATTATTC
*
221569 ATGAAAACTAGTAGAAGTGTTTAGGTTTTGTATATATTGAATA
1 ATGAAAACAAGTAGAAGTGTTTAGGTTTTGTATATATTGAATA
221612 ATGAAAACAAGTAGAAGTGTTTAGGTTTTGTATATATTGA
1 ATGAAAACAAGTAGAAGTGTTTAGGTTTTGTATATATTGA
221652 GATGTTGAGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.37, C:0.02, G:0.22, T:0.39
Consensus pattern (43 bp):
ATGAAAACAAGTAGAAGTGTTTAGGTTTTGTATATATTGAATA
Found at i:236006 original size:12 final size:12
Alignment explanation
Indices: 235991--236019 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
235981 AAATTGAATT
235991 TTATTAGGATTA
1 TTATTAGGATTA
236003 TTATTAGGATTA
1 TTATTAGGATTA
236015 TTATT
1 TTATT
236020 TAAATTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (12 bp):
TTATTAGGATTA
Found at i:237890 original size:12 final size:12
Alignment explanation
Indices: 237873--237900 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
237863 CAACCACTTG
237873 TGTTTATTTAAT
1 TGTTTATTTAAT
237885 TGTTTATTTAAT
1 TGTTTATTTAAT
237897 TGTT
1 TGTT
237901 AATTGTGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.11, T:0.68
Consensus pattern (12 bp):
TGTTTATTTAAT
Found at i:238499 original size:31 final size:29
Alignment explanation
Indices: 238452--238529 Score: 81
Period size: 31 Copynumber: 2.7 Consensus size: 29
238442 ATTTATATCA
*
238452 AATTTG-TATAAAAATTTTGATTTAATGAAT
1 AATTTGATATATAAATTTTGATTTAATG--T
* *
238482 AATTTGATATATAAATTTTAATTTGATGT
1 AATTTGATATATAAATTTTGATTTAATGT
*
238511 AA-TT-ATATATAAAATTTGA
1 AATTTGATATATAAATTTTGA
238530 ATTGTGACTC
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
27 13 0.31
28 2 0.05
29 3 0.07
30 6 0.14
31 18 0.43
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (29 bp):
AATTTGATATATAAATTTTGATTTAATGT
Found at i:238578 original size:31 final size:30
Alignment explanation
Indices: 238488--238582 Score: 90
Period size: 31 Copynumber: 3.2 Consensus size: 30
238478 GAATAATTTG
* *
238488 ATATAT-AAATTTTAA-TTTGATGTAAT-T
1 ATATATAAAATTTTAATTTTAATTTAATGT
* * *
238515 ATATATAAAATTTGAATTGTGACTCTT-ATGT
1 ATATATAAAATTTTAATT-TTAAT-TTAATGT
238546 ATATATAAAATTTTAATTTTAATTTAATTGT
1 ATATATAAAATTTTAATTTTAATTTAA-TGT
238577 ATATAT
1 ATATAT
238583 TTAAAGAAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
27 6 0.11
28 8 0.15
29 3 0.06
30 8 0.15
31 28 0.53
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (30 bp):
ATATATAAAATTTTAATTTTAATTTAATGT
Found at i:238641 original size:25 final size:25
Alignment explanation
Indices: 238613--238709 Score: 153
Period size: 25 Copynumber: 3.9 Consensus size: 25
238603 ACTTATATTC
238613 ATATTAGATTAATATAATTATTTTT
1 ATATTAGATTAATATAATTATTTTT
*
238638 ATATTAAATTAATATAA-TA-TTTT
1 ATATTAGATTAATATAATTATTTTT
*
238661 ATATTAGATTTAATATAATTATTTTC
1 ATATTAGA-TTAATATAATTATTTTT
238687 ATATTAGATTAATATAATTATTT
1 ATATTAGATTAATATAATTATTT
238710 ATGTATGAAT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
23 11 0.17
24 11 0.17
25 33 0.50
26 11 0.17
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (25 bp):
ATATTAGATTAATATAATTATTTTT
Found at i:238679 original size:49 final size:49
Alignment explanation
Indices: 238613--238709 Score: 160
Period size: 49 Copynumber: 2.0 Consensus size: 49
238603 ACTTATATTC
*
238613 ATATTAGATTAATATAATTATTTTTATATTAAATTAATATAA-TATTTT
1 ATATTAGATTAATATAATTATTTTCATATTAAATTAATATAATTATTTT
*
238661 ATATTAGATTTAATATAATTATTTTCATATTAGATTAATATAATTATTT
1 ATATTAGA-TTAATATAATTATTTTCATATTAAATTAATATAATTATTT
238710 ATGTATGAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
48 8 0.18
49 32 0.71
50 5 0.11
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (49 bp):
ATATTAGATTAATATAATTATTTTCATATTAAATTAATATAATTATTTT
Found at i:239287 original size:14 final size:15
Alignment explanation
Indices: 239256--239292 Score: 67
Period size: 14 Copynumber: 2.5 Consensus size: 15
239246 TCACGTCATC
239256 ATTTAACAAATAAAA
1 ATTTAACAAATAAAA
239271 ATTTAACAAAT-AAA
1 ATTTAACAAATAAAA
239285 ATTTAACA
1 ATTTAACA
239293 GAGAGGTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.30
Consensus pattern (15 bp):
ATTTAACAAATAAAA
Found at i:240395 original size:12 final size:11
Alignment explanation
Indices: 240364--240410 Score: 55
Period size: 12 Copynumber: 4.4 Consensus size: 11
240354 ACAATCAATT
240364 AATTTTTT-AA
1 AATTTTTTAAA
240374 AA--TTTTAAA
1 AATTTTTTAAA
240383 AATTTTATTAAA
1 AATTTT-TTAAA
240395 AATATTTTTAAA
1 AAT-TTTTTAAA
240407 AATT
1 AATT
240411 AATTAATTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
8 4 0.12
9 4 0.12
10 2 0.06
11 3 0.09
12 16 0.50
13 3 0.09
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
AATTTTTTAAA
Found at i:242063 original size:3 final size:3
Alignment explanation
Indices: 242055--242097 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
242045 ATACAATATG
242055 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
242098 ACAAGATAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:244642 original size:17 final size:17
Alignment explanation
Indices: 244607--244641 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
244597 TTTTTCTTAG
244607 AATTTTATTAAAAATAA
1 AATTTTATTAAAAATAA
*
244624 AATTTT-TTAATAATAA
1 AATTTTATTAAAAATAA
244640 AA
1 AA
244642 AATGTTTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
AATTTTATTAAAAATAA
Found at i:244893 original size:17 final size:17
Alignment explanation
Indices: 244871--244904 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
244861 AATTTATATT
244871 ATTATTATTTATAATGC
1 ATTATTATTTATAATGC
244888 ATTATTATTTATAATGC
1 ATTATTATTTATAATGC
244905 TAAAACCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (17 bp):
ATTATTATTTATAATGC
Found at i:245218 original size:22 final size:21
Alignment explanation
Indices: 245180--245231 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
245170 ATAAAAAAAT
* *
245180 TAAAAATTATTTTAAAATTTC
1 TAAAAATTATATAAAAATTTC
*
245201 TAAAAATATATATAAAAATTTA
1 TAAAAAT-TATATAAAAATTTC
*
245223 AAAAAATTA
1 TAAAAATTA
245232 ATGTAAAGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
TAAAAATTATATAAAAATTTC
Found at i:245831 original size:10 final size:10
Alignment explanation
Indices: 245816--245841 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
245806 GATTAGTGAC
245816 AAAATTTAGT
1 AAAATTTAGT
245826 AAAATTTAGT
1 AAAATTTAGT
245836 AAAATT
1 AAAATT
245842 CAAAGTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (10 bp):
AAAATTTAGT
Found at i:250299 original size:5 final size:5
Alignment explanation
Indices: 250289--250320 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
250279 TTGTGTGTTC
250289 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
250321 TCACAGTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:250303 original size:9 final size:9
Alignment explanation
Indices: 250289--250319 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
250279 TTGTGTGTTC
250289 TTTATTTTA
1 TTTATTTTA
250298 TTTATTTTA
1 TTTATTTTA
250307 TTTTATTTTA
1 -TTTATTTTA
250317 TTT
1 TTT
250320 TTCACAGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:251762 original size:5 final size:5
Alignment explanation
Indices: 251726--251750 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
251716 ATTATTTAAT
251726 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
251751 TTATATAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:256085 original size:22 final size:22
Alignment explanation
Indices: 256044--256102 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
256034 GTTTTAATAA
* *
256044 TTGTTTTAGTA-TCATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
256065 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
256087 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
256103 GATTTATTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.48
22 10 0.30
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.68
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:256101 original size:20 final size:22
Alignment explanation
Indices: 256057--256102 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
256047 TTTTAGTATC
* *
256057 ATTTTTATTTGTTTTAATATTT
1 ATTTTTATGTGTTTTAATATAT
256079 ATTTTTATGT-TTTTAA-ATAT
1 ATTTTTATGTGTTTTAATATAT
256099 ATTT
1 ATTT
256103 GATTTATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.32
21 6 0.27
22 9 0.41
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (22 bp):
ATTTTTATGTGTTTTAATATAT
Found at i:256119 original size:26 final size:24
Alignment explanation
Indices: 256073--256132 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
256063 ATTTGTTTTA
*
256073 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
256097 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
256123 TTTTTTATTT
1 ATATTTATTT
256133 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:263204 original size:169 final size:169
Alignment explanation
Indices: 262923--263246 Score: 542
Period size: 169 Copynumber: 1.9 Consensus size: 169
262913 ACAATGAGGA
262923 GGAGAGGCCCCTATTTATAGTTGATCCTCCTCAAAGTCAATGGTACAGATTAAAGTACATCAACA
1 GGAGAGGCCCCTATTTATAGTTGATCCTCCTCAAAGTCAATGGTACAGATTAAAGTACATCAACA
*
262988 ACTAAGATTAAAAGCTATCTACAAAATCAAATCTCTAAGACTACAGAATCATAACTTCTAATAAT
66 ACTAAGATTAAAAGCTATCTACAAAATCAAATCTCTAAGACTACAGAATCATAACTTCTAAGAAT
263053 ACAAGTCATCTCTAAGATTGCATATCTTCGAAGATTATG
131 ACAAGTCATCTCTAAGATTGCATATCTTCGAAGATTATG
* * * *
263092 GGAGAGGCCTCTATTTGTAGTTGATCCT-CTCCAAATTCAATGGTACAGATTAAAGTACATCAAT
1 GGAGAGGCCCCTATTTATAGTTGATCCTCCT-CAAAGTCAATGGTACAGATTAAAGTACATCAAC
* * * * *
263156 AGCTAAGATTAAAAGTTATCTACAAAATCAAATCTCTAAGATTACAGAATCATACCTTCTAAGAT
65 AACTAAGATTAAAAGCTATCTACAAAATCAAATCTCTAAGACTACAGAATCATAACTTCTAAGAA
263221 TACAAGTCATCTCTAAGATTGCATAT
130 TACAAGTCATCTCTAAGATTGCATAT
263247 ATTCAAAAAT
Statistics
Matches: 144, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
168 2 0.01
169 142 0.99
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (169 bp):
GGAGAGGCCCCTATTTATAGTTGATCCTCCTCAAAGTCAATGGTACAGATTAAAGTACATCAACA
ACTAAGATTAAAAGCTATCTACAAAATCAAATCTCTAAGACTACAGAATCATAACTTCTAAGAAT
ACAAGTCATCTCTAAGATTGCATATCTTCGAAGATTATG
Done.