Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 100 of 297
Found at i:36009056 original size:51 final size:51
Alignment explanation
Indices: 36008992--36009127 Score: 173
Period size: 51 Copynumber: 2.7 Consensus size: 51
36008982 TGGAAACATG
*
36008992 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * ** * * *
36009043 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* *
36009094 ATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
36009128 TTGATGGTAG
Statistics
Matches: 68, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.40
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
Found at i:36010818 original size:96 final size:96
Alignment explanation
Indices: 36010652--36010941 Score: 454
Period size: 96 Copynumber: 3.0 Consensus size: 96
36010642 GTGTCCGAGG
* * * * * *
36010652 AAGTCTGTTATCGATGGGAATGATCGAGTAGATACGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGATAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
*
36010717 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
*
36010748 AAGTCTGTCATCGAAGGGAACGATGGAGCAAATAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGATAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
*
36010813 TAAAGCCGAAACCAAGAGGGCAAAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
* * * *
36010844 AAGTTTGTCATCAAAGGAAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGATAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
*
36010909 TAAAGCCGAAGCCAAGAGGGCTAAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
36010940 AA
1 AA
36010942 AAAGAAGCGA
Statistics
Matches: 178, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 178 1.00
ACGTcount: A:0.37, C:0.17, G:0.33, T:0.13
Consensus pattern (96 bp):
AAGTCTGTCATCGAAGGGAACGATGGAGCAGATAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
Found at i:36011921 original size:51 final size:51
Alignment explanation
Indices: 36011855--36011983 Score: 150
Period size: 51 Copynumber: 2.5 Consensus size: 51
36011845 ATGATATTAA
* *
36011855 AAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGAATCTTAT
1 AAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGAATCTTAG
* * ** * * ** *
36011906 AAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGTAATCTTAG
1 AAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGAATCTTAG
*
36011957 AAGATATGATATTATATTCTTAGAGAT
1 AAGATATGATATTATAATCTTAGAGAT
36011984 TTGATGGTAG
Statistics
Matches: 60, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.41
Consensus pattern (51 bp):
AAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGAATCTTAG
Found at i:36014704 original size:51 final size:51
Alignment explanation
Indices: 36014649--36014785 Score: 175
Period size: 51 Copynumber: 2.7 Consensus size: 51
36014639 TATGGTAACT
*
36014649 AATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGG
1 AATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
* * * ** * * *
36014700 AATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGT
1 AATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
* *
36014751 AATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 AATCTTAAAAGATATGATATTATAATCTTAGAGAT
36014786 TTGATGGTAG
Statistics
Matches: 69, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 69 1.00
ACGTcount: A:0.41, C:0.06, G:0.13, T:0.40
Consensus pattern (51 bp):
AATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
Found at i:36015423 original size:51 final size:51
Alignment explanation
Indices: 36015359--36015494 Score: 173
Period size: 51 Copynumber: 2.7 Consensus size: 51
36015349 TGGAAACATG
*
36015359 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * ** * * *
36015410 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* *
36015461 ATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
36015495 TTGATGGTAG
Statistics
Matches: 68, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.40
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
Found at i:36015797 original size:709 final size:709
Alignment explanation
Indices: 36014637--36016562 Score: 3692
Period size: 709 Copynumber: 2.7 Consensus size: 709
36014627 AACTTAGGCT
* *
36014637 AATATGGTAAC-TAATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 AATATGGAAACATGATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
36014701 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTAATCTTAGAAGATAT
66 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTAATCTTAGAAGATAT
**
36014766 GATATTATATTCTTAGAGATTTGATGGTAGGTAAACTTTAATCTCGTCCGTCGATGTAATTGTAT
131 GATATTATATTCTTAGAGATTTGATGGTAGGTACCCTTTAATCTCGTCCGTCGATGTAATTGTAT
36014831 CTTGACCGTCGGTTTTGGGGGAGCTCAAGTATAAATAGAGAGCCTCCCCCTCATCTGTACTCACT
196 CTTGACCGTCGGTTTTGGGGGAGCTCAAGTATAAATAGAGAGCCTCCCCCTCATCTGTACTCACT
36014896 CCATTCATTGTTTCATTATTCTTTGTGAATAAGAGAATAGAGAGCATTTACTCAAACACTTTGTG
261 CCATTCATTGTTTCATTATTCTTTGTGAATAAGAGAATAGAGAGCATTTACTCAAACACTTTGTG
36014961 TGCGTCCCTTTCTGTTGTTCTTTATAAGCTTCTTTTGGCATAAGTTTGCTTCCGCTGTACGAGTT
326 TGCGTCCCTTTCTGTTGTTCTTTATAAGCTTCTTTTGGCATAAGTTTGCTTCCGCTGTACGAGTT
36015026 GGTGCCTTGGAGGAGTTCTTAAGGAATCTTAATTCGAGTAAAGGCTGACTTGGGTGAGTTTGGAC
391 GGTGCCTTGGAGGAGTTCTTAAGGAATCTTAATTCGAGTAAAGGCTGACTTGGGTGAGTTTGGAC
36015091 GAGCGAATCGCCTAAGGCCGCACGGATTGCGAGACAAAAAGTCTAGCCCCGTGATAAGTGTCACG
456 GAGCGAATCGCCTAAGGCCGCACGGATTGCGAGACAAAAAGTCTAGCCCCGTGATAAGTGTCACG
36015156 GGCCAGAATTCAAAGCCCGTGACCATCGAACCAAATGCATCCGATGGAGGTCTATTACTTAGATG
521 GGCCAGAATTCAAAGCCCGTGACCATCGAACCAAATGCATCCGATGGAGGTCTATTACTTAGATG
*
36015221 GGGATCATTTGGCCCATGTGAGCTGGCCCGATTCAAGGAACTGTTGGAGAAGCTTGTCAGATTGA
586 GGGATCATTTGGCCCATGTGAGCTGGCCCGATTCAAGGAACTGTTGGAGAAGCTTGTCAGATTAA
36015286 AGTCTGGTTGGCCCAATCGGACTGGCCCGTTGCTTGAAGAGATTGAAGGTCCATCTACA
651 AGTCTGGTTGGCCCAATCGGACTGGCCCGTTGCTTGAAGAGATTGAAGGTCCATCTACA
36015345 AATATGGAAACATGATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 AATATGGAAACATGATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
36015410 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTAATCTTAGAAGATAT
66 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTAATCTTAGAAGATAT
36015475 GATATTATATTCTTAGAGATTTGATGGTAGGTACCCTTTAATCTCGTCCGTCGATGTAATTGTAT
131 GATATTATATTCTTAGAGATTTGATGGTAGGTACCCTTTAATCTCGTCCGTCGATGTAATTGTAT
36015540 CTTGACCGTCGGTTTTGGGGGAGCTCAAGTATAAATAGAGAGCCTCCCCCTCATCTGTACTCACT
196 CTTGACCGTCGGTTTTGGGGGAGCTCAAGTATAAATAGAGAGCCTCCCCCTCATCTGTACTCACT
36015605 CCATTCATTGTTTCATTATTCTTTGTGAATAAGAGAATAGAGAGCATTTACTCAAACACTTTGTG
261 CCATTCATTGTTTCATTATTCTTTGTGAATAAGAGAATAGAGAGCATTTACTCAAACACTTTGTG
36015670 TGCGTCCCTTTCTGTTGTTCTTTATAAGCTTCTTTTGGCATAAGTTTGCTTCCGCTGTACGAGTT
326 TGCGTCCCTTTCTGTTGTTCTTTATAAGCTTCTTTTGGCATAAGTTTGCTTCCGCTGTACGAGTT
* * *
36015735 GGTGCCTTGGAGGAGTTCTTAAGGAATCCTCATTCGAGTAAAGGCTGACTTGGGCGAGTTTGGAC
391 GGTGCCTTGGAGGAGTTCTTAAGGAATCTTAATTCGAGTAAAGGCTGACTTGGGTGAGTTTGGAC
*
36015800 GAGCAAATCGCCTAAGGCCGCACGGATTGCGAGACAAAAAGTCTAGCCCCGTGATAAGTGTCACG
456 GAGCGAATCGCCTAAGGCCGCACGGATTGCGAGACAAAAAGTCTAGCCCCGTGATAAGTGTCACG
36015865 GGCCAGAATTCAAAGCCCGTGACCATCGAACCAAATGCATCCGATGGAGGTCTATTACTTAGATG
521 GGCCAGAATTCAAAGCCCGTGACCATCGAACCAAATGCATCCGATGGAGGTCTATTACTTAGATG
36015930 GGGATCATTTGGCCCATGTGAGCTGGCCCGATTCAAGGAACTGTTGGAGAAGCTTGTCAGATTAA
586 GGGATCATTTGGCCCATGTGAGCTGGCCCGATTCAAGGAACTGTTGGAGAAGCTTGTCAGATTAA
*
36015995 AGTTTGGTTGGCCCAATCGGACTGGCCCGTTGCTTGAAGAGATTGAAGGTCCATCTACA
651 AGTCTGGTTGGCCCAATCGGACTGGCCCGTTGCTTGAAGAGATTGAAGGTCCATCTACA
36016054 AATATGGAAACATGATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 AATATGGAAACATGATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
36016119 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTAATCTTAGAAGATAT
66 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTAATCTTAGAAGATAT
36016184 GATATTATATTCTTAGAGATTTGATGGTAGGTACCCTTTAATCTCGTCCGTCGATGTAATTGTAT
131 GATATTATATTCTTAGAGATTTGATGGTAGGTACCCTTTAATCTCGTCCGTCGATGTAATTGTAT
* *
36016249 CTTGACCGTCGGTTTTGGGGGAGCTCAAGTATAAATAGAAAGCCTCCCCCTCATTTGTACTCACT
196 CTTGACCGTCGGTTTTGGGGGAGCTCAAGTATAAATAGAGAGCCTCCCCCTCATCTGTACTCACT
36016314 CCATTCATTGTTTCATTATTCTTTGTGAATAAGAGAATAGAGAGCATTTACTCAAACACTTTGTG
261 CCATTCATTGTTTCATTATTCTTTGTGAATAAGAGAATAGAGAGCATTTACTCAAACACTTTGTG
* *
36016379 TGCGTCCCTTTCTGTTGTTCTTTATAAGCTTCTTTTGGTATAAGTTTGCTTCCACTGTACGAGTT
326 TGCGTCCCTTTCTGTTGTTCTTTATAAGCTTCTTTTGGCATAAGTTTGCTTCCGCTGTACGAGTT
36016444 GGTGCCTTGGAGGAGTTCTTAAGGAATCTTAATTCGAGTAAAGGCTGACTTGGGTGAGTTTGGAC
391 GGTGCCTTGGAGGAGTTCTTAAGGAATCTTAATTCGAGTAAAGGCTGACTTGGGTGAGTTTGGAC
** *
36016509 GAGCGAATCGCCTAAGATCGCACGGATTACGAGACAAAAAGTCTAGCCCCGTGA
456 GAGCGAATCGCCTAAGGCCGCACGGATTGCGAGACAAAAAGTCTAGCCCCGTGA
36016563 CACTAGTTGC
Statistics
Matches: 1196, Mismatches: 21, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
708 10 0.01
709 1186 0.99
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (709 bp):
AATATGGAAACATGATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTAATCTTAGAAGATAT
GATATTATATTCTTAGAGATTTGATGGTAGGTACCCTTTAATCTCGTCCGTCGATGTAATTGTAT
CTTGACCGTCGGTTTTGGGGGAGCTCAAGTATAAATAGAGAGCCTCCCCCTCATCTGTACTCACT
CCATTCATTGTTTCATTATTCTTTGTGAATAAGAGAATAGAGAGCATTTACTCAAACACTTTGTG
TGCGTCCCTTTCTGTTGTTCTTTATAAGCTTCTTTTGGCATAAGTTTGCTTCCGCTGTACGAGTT
GGTGCCTTGGAGGAGTTCTTAAGGAATCTTAATTCGAGTAAAGGCTGACTTGGGTGAGTTTGGAC
GAGCGAATCGCCTAAGGCCGCACGGATTGCGAGACAAAAAGTCTAGCCCCGTGATAAGTGTCACG
GGCCAGAATTCAAAGCCCGTGACCATCGAACCAAATGCATCCGATGGAGGTCTATTACTTAGATG
GGGATCATTTGGCCCATGTGAGCTGGCCCGATTCAAGGAACTGTTGGAGAAGCTTGTCAGATTAA
AGTCTGGTTGGCCCAATCGGACTGGCCCGTTGCTTGAAGAGATTGAAGGTCCATCTACA
Found at i:36016132 original size:51 final size:51
Alignment explanation
Indices: 36016068--36016203 Score: 173
Period size: 51 Copynumber: 2.7 Consensus size: 51
36016058 TGGAAACATG
*
36016068 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * ** * * *
36016119 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* *
36016170 ATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
36016204 TTGATGGTAG
Statistics
Matches: 68, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.40
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
Found at i:36017261 original size:27 final size:27
Alignment explanation
Indices: 36017230--36017285 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
36017220 TCTCTTAAGT
36017230 ATGTCAAATGAATTATGTATGAATTTC
1 ATGTCAAATGAATTATGTATGAATTTC
36017257 ATGTCAAATGAATTATGTATGAATTTC
1 ATGTCAAATGAATTATGTATGAATTTC
36017284 AT
1 AT
36017286 AAATTGAGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (27 bp):
ATGTCAAATGAATTATGTATGAATTTC
Found at i:36020603 original size:13 final size:13
Alignment explanation
Indices: 36020585--36020609 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36020575 TGCTTCATTT
36020585 TTTTTATTTTTTA
1 TTTTTATTTTTTA
36020598 TTTTTATTTTTT
1 TTTTTATTTTTT
36020610 GGTTTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:36025172 original size:22 final size:23
Alignment explanation
Indices: 36025125--36025198 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 23
36025115 ATATTTTAAC
* * *
36025125 ATTTAAA-ATATAATCAATAAAA
1 ATTTAAATATATAATCATTATAT
36025147 ATTTAAATATATAAT-ATTATAT
1 ATTTAAATATATAATCATTATAT
* * * *
36025169 ATTTAAATTTTTATTGATTATAT
1 ATTTAAATATATAATCATTATAT
36025192 -TTTAAAT
1 ATTTAAAT
36025199 GTTAAAATAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
22 30 0.68
23 14 0.32
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (23 bp):
ATTTAAATATATAATCATTATAT
Found at i:36025176 original size:28 final size:28
Alignment explanation
Indices: 36025093--36025230 Score: 82
Period size: 26 Copynumber: 5.5 Consensus size: 28
36025083 TTTTTATAAA
*
36025093 ATTT-AATTTGAATATATAA-ATTATAT
1 ATTTAAATTTAAATATATAATATTATAT
36025119 -TTTAACATTTAAA-ATATAATCA--ATA-
1 ATTTAA-ATTTAAATATATAAT-ATTATAT
36025144 A---AAATTTAAATATATAATATTATAT
1 ATTTAAATTTAAATATATAATATTATAT
36025169 ATTTAAATTT---T-TAT--TGATTATAT
1 ATTTAAATTTAAATATATAAT-ATTATAT
36025192 -TTTAAATGTTAAA-ATATAAT-TTATAT
1 ATTTAAAT-TTAAATATATAATATTATAT
*
36025218 ATTCAAA-TTAAAT
1 ATTTAAATTTAAAT
36025231 TTTATAAAAA
Statistics
Matches: 88, Mismatches: 2, Indels: 44
0.66 0.01 0.33
Matches are distributed among these distances:
22 16 0.18
23 18 0.20
24 6 0.07
25 10 0.11
26 19 0.22
27 11 0.12
28 8 0.09
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (28 bp):
ATTTAAATTTAAATATATAATATTATAT
Found at i:36026389 original size:43 final size:43
Alignment explanation
Indices: 36026342--36026427 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
36026332 TCTCAGTTGG
36026342 ATGCCTCTCCTTCACAAAGGTCTGCCCCCCCCCCCCCCCTTTT
1 ATGCCTCTCCTTCACAAAGGTCTGCCCCCCCCCCCCCCCTTTT
*
36026385 ATGCCTCTCCTTCACAAAGGTCTGCCCCCCCCCCCCTCCTTTT
1 ATGCCTCTCCTTCACAAAGGTCTGCCCCCCCCCCCCCCCTTTT
36026428 GATTTTGTCT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.12, C:0.52, G:0.09, T:0.27
Consensus pattern (43 bp):
ATGCCTCTCCTTCACAAAGGTCTGCCCCCCCCCCCCCCCTTTT
Found at i:36041752 original size:12 final size:11
Alignment explanation
Indices: 36041735--36041768 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
36041725 CTTGTTTTTA
36041735 TATTATTTATT
1 TATTATTTATT
36041746 TACTTATTTATT
1 TA-TTATTTATT
*
36041758 TATTACTTATT
1 TATTATTTATT
36041769 ATTTTAGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (11 bp):
TATTATTTATT
Found at i:36041763 original size:15 final size:16
Alignment explanation
Indices: 36041732--36041772 Score: 59
Period size: 15 Copynumber: 2.6 Consensus size: 16
36041722 CCCCTTGTTT
36041732 TTATATTATTTATTTAC
1 TTAT-TTATTTATTTAC
36041749 TTATTTATTTA-TTAC
1 TTATTTATTTATTTAC
36041764 TTA-TTATTT
1 TTATTTATTT
36041773 TAGTTTGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.25
15 7 0.29
16 7 0.29
17 4 0.17
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (16 bp):
TTATTTATTTATTTAC
Found at i:36043931 original size:48 final size:46
Alignment explanation
Indices: 36043860--36043983 Score: 142
Period size: 48 Copynumber: 2.7 Consensus size: 46
36043850 TATAAGAGCT
* * * *
36043860 AGTGTAAGACATGTCT-GGAACATGCGTCGGTCTTGAGATATATAAGCC
1 AGTGTAAGACATGTCTAGG-ACATGCATCAGTATTGAGACA-A-AAGCC
* * * *
36043908 AGTGTAAGACATGTATATGACATGCATCAGTATTGAGACAAGAGCT
1 AGTGTAAGACATGTCTAGGACATGCATCAGTATTGAGACAAAAGCC
36043954 AGTGTAAGACATGTCTAGGACATGCATCAG
1 AGTGTAAGACATGTCTAGGACATGCATCAG
36043984 CCTCGAGATA
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 31 0.48
47 1 0.02
48 32 0.49
49 1 0.02
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGCATCAGTATTGAGACAAAAGCC
Found at i:36043982 original size:46 final size:46
Alignment explanation
Indices: 36043813--36043983 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 46
36043803 GTATGTGTAT
* *
36043813 TAGTGTAAGACATGTCTGGGACATGCATCGGCCATATT---ATAAGAGC
1 TAGTGTAAGACATGTCTAGGACATGCATCAG---TATTGAGATAAGAGC
* * * *
36043859 TAGTGTAAGACATGTCT-GGAACATGCGTCGGTCTTGAGATATATAAGC
1 TAGTGTAAGACATGTCTAGG-ACATGCATCAGTATTGAGATA-A-GAGC
* * * *
36043907 CAGTGTAAGACATGTATATGACATGCATCAGTATTGAGACAAGAGC
1 TAGTGTAAGACATGTCTAGGACATGCATCAGTATTGAGATAAGAGC
36043953 TAGTGTAAGACATGTCTAGGACATGCATCAG
1 TAGTGTAAGACATGTCTAGGACATGCATCAG
36043984 CCTCGAGATA
Statistics
Matches: 104, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
43 3 0.03
45 2 0.02
46 61 0.59
47 2 0.02
48 35 0.34
49 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (46 bp):
TAGTGTAAGACATGTCTAGGACATGCATCAGTATTGAGATAAGAGC
Found at i:36044024 original size:94 final size:94
Alignment explanation
Indices: 36043853--36044025 Score: 213
Period size: 94 Copynumber: 1.8 Consensus size: 94
36043843 GCCATATTAT
* * * * * * *
36043853 AAGAGCTAGTGTAAGACATGTCTGGAACATGCGTCGGTCTTGAGATATATAAGCCAGTGTAAGAC
1 AAGAGCTAGTGTAAGACATGTCTGGAACATGCATCAGCCTCGAGATATAGAAACCAGTGTAAAAC
* *
36043918 ATGTATATGACATGCATCAGTATTGAGAC
66 ATGCATAGGACATGCATCAGTATTGAGAC
*
36043947 AAGAGCTAGTGTAAGACATGTCTAGG-ACATGCATCAGCCTCGAGATATAGAAACTAGTGTAAAA
1 AAGAGCTAGTGTAAGACATGTCT-GGAACATGCATCAGCCTCGAGATATAGAAACCAGTGTAAAA
* * *
36044011 CCTGCCTGGGACATG
65 CATGCATAGGACATG
36044026 GCGTCAGCTT
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
94 63 0.97
95 2 0.03
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (94 bp):
AAGAGCTAGTGTAAGACATGTCTGGAACATGCATCAGCCTCGAGATATAGAAACCAGTGTAAAAC
ATGCATAGGACATGCATCAGTATTGAGAC
Found at i:36044133 original size:49 final size:49
Alignment explanation
Indices: 36044045--36044162 Score: 148
Period size: 49 Copynumber: 2.4 Consensus size: 49
36044035 TGTTGTGTGT
*
36044045 CAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGATGAAAGC
* * * * *
36044094 CAGTGTAAAACCTGTTTGGGACATGGCATCAGTC-TCGATATATGAAAGT
1 CAGTGTAAGACCTGTTTGGGACATGGCATC-GACACCGATAGATGAAAGC
* *
36044143 CAGCGTAAGACCTGTCTGGG
1 CAGTGTAAGACCTGTTTGGG
36044163 TTATATTGGG
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
49 57 0.97
50 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGATGAAAGC
Found at i:36051547 original size:48 final size:48
Alignment explanation
Indices: 36051484--36051636 Score: 157
Period size: 48 Copynumber: 3.2 Consensus size: 48
36051474 ACATTATGAG
* * * *
36051484 AGCCAGTGTAGGACATGTTTGGGACATGCGTCAGCTTTGAGATATACA
1 AGCCAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGATATACA
* * ** *
36051532 AGCCAGTGTAAGACATGTTTAGGACATGCATTGGCATTGAGA-CGA-G
1 AGCCAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGATATACA
* * * * *
36051578 AGCTAGTGTAAGACATGTCTGGGACATTCATCGGCCTCGAGATATACA
1 AGCCAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGATATACA
*
36051626 AGCTAGTGTAA
1 AGCCAGTGTAA
36051637 AACCTGTCTA
Statistics
Matches: 84, Mismatches: 19, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
46 35 0.42
47 2 0.02
48 47 0.56
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.25
Consensus pattern (48 bp):
AGCCAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGATATACA
Found at i:36051593 original size:94 final size:94
Alignment explanation
Indices: 36051481--36051651 Score: 234
Period size: 94 Copynumber: 1.8 Consensus size: 94
36051471 GCCACATTAT
* * * * * *
36051481 GAGAGCCAGTGTAGGACATGTTTGGGACATGCGTCAGCTTTGAGATATACAAGCCAGTGTAAGAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAAGCCAGTGTAAAAC
*
36051546 ATGTTTAGGACATGCATTGGCATTGAGAC
66 ATGTCTAGGACATGCATTGGCATTGAGAC
* * * *
36051575 GAGAGCTAGTGTAAGACATGTCTGGGACATTCATCGGCCTCGAGATATACAAGCTAGTGTAAAAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAAGCCAGTGTAAAAC
*
36051640 CTGTCTAGGACA
66 ATGTCTAGGACA
36051652 CGGGTGTGGG
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
94 65 1.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.25
Consensus pattern (94 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAAGCCAGTGTAAAAC
ATGTCTAGGACATGCATTGGCATTGAGAC
Found at i:36052811 original size:5 final size:5
Alignment explanation
Indices: 36052801--36052857 Score: 78
Period size: 5 Copynumber: 10.6 Consensus size: 5
36052791 ATTGAGTCCA
36052801 TTTAT TTTAT TTTAT TTTAT TTTAGT TTTAT TTTATT TTTAT GTTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTA-T TTTAT TTTA-T TTTAT -TTTAT
36052849 TTATAT TTT
1 TT-TAT TTT
36052858 CTTAGACTTC
Statistics
Matches: 48, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
5 28 0.58
6 20 0.42
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:36052814 original size:10 final size:10
Alignment explanation
Indices: 36052801--36052857 Score: 78
Period size: 11 Copynumber: 5.3 Consensus size: 10
36052791 ATTGAGTCCA
36052801 TTTATTTTAT
1 TTTATTTTAT
36052811 TTTATTTTAT
1 TTTATTTTAT
36052821 TTTAGTTTTAT
1 TTTA-TTTTAT
36052832 TTTATTTTTAT
1 TTTA-TTTTAT
36052843 GTTTATTTATAT
1 -TTTATTT-TAT
36052855 TTT
1 TTT
36052858 CTTAGACTTC
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
10 14 0.33
11 22 0.51
12 7 0.16
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (10 bp):
TTTATTTTAT
Found at i:36052831 original size:16 final size:15
Alignment explanation
Indices: 36052801--36052857 Score: 78
Period size: 17 Copynumber: 3.5 Consensus size: 15
36052791 ATTGAGTCCA
36052801 TTTATTTTATTTTAT
1 TTTATTTTATTTTAT
36052816 TTTATTTTAGTTTTAT
1 TTTATTTTA-TTTTAT
36052832 TTTATTTTTATGTTTAT
1 TTTA-TTTTAT-TTTAT
36052849 TTATATTTT
1 TT-TATTTT
36052858 CTTAGACTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.24
16 11 0.29
17 16 0.42
18 2 0.05
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (15 bp):
TTTATTTTATTTTAT
Found at i:36058179 original size:24 final size:24
Alignment explanation
Indices: 36058152--36058198 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
36058142 TGAATTCAAC
* *
36058152 ATTAAAATTTATAATTTATTTAAA
1 ATTAAAATTTAAAATTAATTTAAA
*
36058176 ATTAATATTTAAAATTAATTTAA
1 ATTAAAATTTAAAATTAATTTAA
36058199 TATAATTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (24 bp):
ATTAAAATTTAAAATTAATTTAAA
Found at i:36058186 original size:13 final size:13
Alignment explanation
Indices: 36058168--36058194 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36058158 ATTTATAATT
36058168 TATTTAAAATTAA
1 TATTTAAAATTAA
36058181 TATTTAAAATTAA
1 TATTTAAAATTAA
36058194 T
1 T
36058195 TTAATATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TATTTAAAATTAA
Found at i:36058218 original size:31 final size:31
Alignment explanation
Indices: 36058183--36058251 Score: 74
Period size: 29 Copynumber: 2.3 Consensus size: 31
36058173 AAAATTAATA
36058183 TTTAAAATTA-ATTTA-ATATAATTAATATTAT
1 TTTAAAATTATATTTATATAT-ATT-ATATTAT
*
36058214 TTT--AATTATATTTTTATATATTATATTAT
1 TTTAAAATTATATTTATATATATTATATTAT
*
36058243 ATTAAAATT
1 TTTAAAATT
36058252 TAACAATACG
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
29 14 0.44
30 7 0.22
31 11 0.34
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (31 bp):
TTTAAAATTATATTTATATATATTATATTAT
Found at i:36078181 original size:25 final size:25
Alignment explanation
Indices: 36078101--36078205 Score: 126
Period size: 25 Copynumber: 4.2 Consensus size: 25
36078091 AGCATAGCTG
*
36078101 CTTTATCATATAACTGGAGGCCT-AGCC
1 CTTTATC--ATAACTGG-GGCATAAGCC
*
36078128 TCTTT-TAATAACTGGGGCA-AAGCC
1 -CTTTATCATAACTGGGGCATAAGCC
36078152 CTTTATCATAACTGGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCC
*
36078177 CTTTATCATAGCTGGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCC
36078202 CTTT
1 CTTT
36078206 TACACTTCCT
Statistics
Matches: 70, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
23 4 0.06
24 20 0.29
25 41 0.59
27 1 0.01
28 4 0.06
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (25 bp):
CTTTATCATAACTGGGGCATAAGCC
Found at i:36078281 original size:20 final size:20
Alignment explanation
Indices: 36078256--36078302 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
36078246 TTATGAATAC
36078256 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
36078276 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
36078296 ACCATGT
1 ATCATGT
36078303 TTATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:36086191 original size:24 final size:24
Alignment explanation
Indices: 36086119--36086264 Score: 179
Period size: 25 Copynumber: 6.0 Consensus size: 24
36086109 GCTTTATCAT
*
36086119 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
36086144 ATAACTGGGGCA-AAACCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
36086167 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
36086191 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
* * *
36086216 ATAGCTGAGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
*
36086241 ATAGCTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
36086265 CACTTCCTCC
Statistics
Matches: 110, Mismatches: 8, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
23 18 0.16
24 39 0.35
25 53 0.48
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:36086339 original size:20 final size:20
Alignment explanation
Indices: 36086313--36086379 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
36086303 TTATGAATAC
36086313 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
36086333 CTCATGTGCATATCATTCAT
1 ATCATGTGCATATCATACAT
*
36086353 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
36086373 ATCATGT
1 ATCATGT
36086380 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:36088412 original size:66 final size:66
Alignment explanation
Indices: 36088306--36088438 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
36088296 TAGAATTTGC
36088306 CTACAACAACAATTTTCAAACAAGTTTGAAAATGGTGCCTTATGAGGCCTTGTATGGCAGGAAAT
1 CTACAACAACAATTTTCAAACAAGTTTGAAAATGGTGCCTTATGAGGCCTTGTATGGCAGGAAAT
36088371 G
66 G
* *
36088372 CTACAACAATAGTTTTCAAACAAGTTTGAAAATGGTGCCTTATGAGGCCTTGTATGGCAGGAAAT
1 CTACAACAACAATTTTCAAACAAGTTTGAAAATGGTGCCTTATGAGGCCTTGTATGGCAGGAAAT
36088437 G
66 G
36088438 C
1 C
36088439 CGAACTCCAT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.28
Consensus pattern (66 bp):
CTACAACAACAATTTTCAAACAAGTTTGAAAATGGTGCCTTATGAGGCCTTGTATGGCAGGAAAT
G
Found at i:36094032 original size:20 final size:20
Alignment explanation
Indices: 36094007--36094047 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
36093997 AGCAAAAAGA
36094007 AAGAAAAATGGTCATTCATC
1 AAGAAAAATGGTCATTCATC
36094027 AAGAAAAATGGTCATTCATC
1 AAGAAAAATGGTCATTCATC
36094047 A
1 A
36094048 TCTTCTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.24
Consensus pattern (20 bp):
AAGAAAAATGGTCATTCATC
Found at i:36094748 original size:10 final size:10
Alignment explanation
Indices: 36094733--36094761 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
36094723 GAAATGTTTG
36094733 ATGATATAAT
1 ATGATATAAT
36094743 ATGATATAAT
1 ATGATATAAT
36094753 A-GATATAAT
1 ATGATATAAT
36094762 TGTTTATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.42
10 11 0.58
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (10 bp):
ATGATATAAT
Found at i:36095027 original size:37 final size:36
Alignment explanation
Indices: 36094981--36095105 Score: 117
Period size: 37 Copynumber: 3.4 Consensus size: 36
36094971 TGTTTTCAAT
* **
36094981 TGGACTAGCTCTTCGGAGTAATTGGAGTGTTATCGGG
1 TGGATTAGCTCTTATGAG-AATTGGAGTGTTATCGGG
* * * * *
36095018 TGGATTAGCTATTATGAGCATTTGGTGTTTTATCGAG
1 TGGATTAGCTCTTATGAG-AATTGGAGTGTTATCGGG
* *
36095055 TGGATTAGCTCTTATGAGCATCT-AACGTGTTATCGGG
1 TGGATTAGCTCTTATGAGAAT-TGGA-GTGTTATCGGG
36095092 TGGATTAGCTCTTA
1 TGGATTAGCTCTTA
36095106 CGAGCGATTG
Statistics
Matches: 70, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
36 1 0.01
37 69 0.99
ACGTcount: A:0.21, C:0.13, G:0.29, T:0.38
Consensus pattern (36 bp):
TGGATTAGCTCTTATGAGAATTGGAGTGTTATCGGG
Found at i:36095121 original size:37 final size:36
Alignment explanation
Indices: 36095007--36095131 Score: 137
Period size: 37 Copynumber: 3.4 Consensus size: 36
36094997 AGTAATTGGA
*
36095007 GTGTTATCGGGTGGATTAGCTATTATGAGCATTTGGT-
1 GTGTTATCGGGTGGATTAGCTCTTATGAGCA-TT-GTC
* * **
36095044 GTTTTATCGAGTGGATTAGCTCTTATGAGCATCTAAC
1 GTGTTATCGGGTGGATTAGCTCTTATGAGCAT-TGTC
*
36095081 GTGTTATCGGGTGGATTAGCTCTTACGAGCGATTGTC
1 GTGTTATCGGGTGGATTAGCTCTTATGAGC-ATTGTC
*
36095118 GTGTT-TCGGTTGGA
1 GTGTTATCGGGTGGA
36095132 ATATATATGT
Statistics
Matches: 74, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
36 9 0.12
37 63 0.85
38 2 0.03
ACGTcount: A:0.18, C:0.13, G:0.30, T:0.38
Consensus pattern (36 bp):
GTGTTATCGGGTGGATTAGCTCTTATGAGCATTGTC
Found at i:36095552 original size:18 final size:18
Alignment explanation
Indices: 36095531--36095571 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
36095521 GTAAAATTTT
36095531 AAGTATAATCTTAAATGA
1 AAGTATAATCTTAAATGA
*
36095549 AAGTATGATCTTAAATGA
1 AAGTATAATCTTAAATGA
36095567 AAGTA
1 AAGTA
36095572 GTTAACTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.49, C:0.05, G:0.15, T:0.32
Consensus pattern (18 bp):
AAGTATAATCTTAAATGA
Found at i:36096155 original size:33 final size:33
Alignment explanation
Indices: 36096118--36096180 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
36096108 CTATTGTCCA
36096118 AGCCTTATGTTGACCTTATTTTTCCTCCATCCG
1 AGCCTTATGTTGACCTTATTTTTCCTCCATCCG
36096151 AGCCTTATGTTGACCTTATTTTTCCTCCAT
1 AGCCTTATGTTGACCTTATTTTTCCTCCAT
36096181 ACTTTTACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.16, C:0.29, G:0.11, T:0.44
Consensus pattern (33 bp):
AGCCTTATGTTGACCTTATTTTTCCTCCATCCG
Found at i:36096962 original size:21 final size:21
Alignment explanation
Indices: 36096936--36096976 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
36096926 CTGAAACTAT
*
36096936 ACTCATATATCTTCTTACCAG
1 ACTCATATATCTTCCTACCAG
36096957 ACTCATATATCTTCCTACCA
1 ACTCATATATCTTCCTACCA
36096977 TAAAATTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.32, G:0.02, T:0.37
Consensus pattern (21 bp):
ACTCATATATCTTCCTACCAG
Found at i:36100067 original size:15 final size:15
Alignment explanation
Indices: 36100047--36100076 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
36100037 CTCTATCAAG
*
36100047 GACAAGAATAATCCA
1 GACAAGAAAAATCCA
36100062 GACAAGAAAAATCCA
1 GACAAGAAAAATCCA
36100077 TATGAACTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.20, G:0.13, T:0.10
Consensus pattern (15 bp):
GACAAGAAAAATCCA
Found at i:36100776 original size:15 final size:15
Alignment explanation
Indices: 36100756--36100784 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
36100746 GAAGCCCAGA
36100756 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
36100771 ATAAGGAAATCCAA
1 ATAAGGAAATCCAA
36100785 TTTACAACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:36101500 original size:36 final size:36
Alignment explanation
Indices: 36101388--36101499 Score: 206
Period size: 36 Copynumber: 3.1 Consensus size: 36
36101378 AATTAACCTT
*
36101388 TTTCACTAACTGGGATGTTGCTAAAATTAAACAATT
1 TTTCACTAACTGGGATGTTGCTAAAATTAAACAATC
36101424 TTTCACTAACTGGGATGTTGCTAAAATTAAACAATC
1 TTTCACTAACTGGGATGTTGCTAAAATTAAACAATC
*
36101460 TTTCGCTAACTGGGATGTTGCTAAAATTAAACAATC
1 TTTCACTAACTGGGATGTTGCTAAAATTAAACAATC
36101496 TTTC
1 TTTC
36101500 GGTCAATCCA
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 74 1.00
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (36 bp):
TTTCACTAACTGGGATGTTGCTAAAATTAAACAATC
Found at i:36103800 original size:27 final size:27
Alignment explanation
Indices: 36103769--36103946 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36103759 TAAATTGTAC
36103769 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36103796 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36103822 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36103850 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36103878 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36103905 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36103932 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36103947 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36103883 original size:82 final size:81
Alignment explanation
Indices: 36103770--36103925 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36103760 AAATTGTACA
* *
36103770 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
36103834 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
36103851 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
36103916 TGCGAGTTGA
65 TGCGAATTGA
36103926 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36103937 original size:82 final size:81
Alignment explanation
Indices: 36103766--36103946 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
36103756 GATTAAATTG
* *
36103766 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
36103831 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
36103847 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
36103911 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
36103929 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36103947 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36111863 original size:27 final size:27
Alignment explanation
Indices: 36111832--36112009 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36111822 TAAATTGTAC
36111832 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36111859 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36111885 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36111913 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36111941 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36111968 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36111995 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36112010 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36111946 original size:82 final size:81
Alignment explanation
Indices: 36111833--36111988 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36111823 AAATTGTACA
* *
36111833 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
36111897 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
36111914 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
36111979 TGCGAGTTGA
65 TGCGAATTGA
36111989 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36112000 original size:82 final size:81
Alignment explanation
Indices: 36111829--36112009 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
36111819 GATTAAATTG
* *
36111829 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
36111894 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
36111910 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
36111974 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
36111992 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36112010 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36117745 original size:13 final size:13
Alignment explanation
Indices: 36117723--36117782 Score: 52
Period size: 13 Copynumber: 4.6 Consensus size: 13
36117713 TTTCACAATG
*
36117723 CTTTTAAAAAGTA
1 CTTTTGAAAAGTA
36117736 CTTTTGAAAAGTA
1 CTTTTGAAAAGTA
* *
36117749 -TTGTGGAAAAGTG
1 CTT-TTGAAAAGTA
*
36117762 CTTTT-AAGAAGTG
1 CTTTTGAA-AAGTA
36117775 CTTTTGAA
1 CTTTTGAA
36117783 CAGTTTGGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
12 4 0.10
13 31 0.79
14 4 0.10
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.38
Consensus pattern (13 bp):
CTTTTGAAAAGTA
Found at i:36119927 original size:71 final size:72
Alignment explanation
Indices: 36119812--36120071 Score: 375
Period size: 72 Copynumber: 3.7 Consensus size: 72
36119802 CCTGTGAATC
* * * * **
36119812 AATTTTATATCC-AAAATCATATATAAACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGT
1 AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGT
36119874 AGAACATA
65 AGAACATA
*
36119882 AATTTAATATCCAAAAATCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTA
1 AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTA
* *
36119947 AAATATA
66 GAACATA
* *
36119954 AATTCAATATCCAAAAACCAAACATAAACAACCATTGATAAAACTAGATTACACATAAATAAGTA
1 AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTA
36120019 GAACATA
66 GAACATA
*
36120026 AA-TTAATATCCAAAAACCAAACATAAATAACTATTGATAAAACTAG
1 AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
36120072 TTTAGCATTG
Statistics
Matches: 172, Mismatches: 15, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
70 11 0.06
71 75 0.44
72 86 0.50
ACGTcount: A:0.55, C:0.14, G:0.05, T:0.26
Consensus pattern (72 bp):
AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTA
GAACATA
Found at i:36120519 original size:18 final size:18
Alignment explanation
Indices: 36120496--36120565 Score: 113
Period size: 18 Copynumber: 3.9 Consensus size: 18
36120486 CATTTCCTTC
* *
36120496 AATGTGAGCATCATTTGA
1 AATGTGAACATCATTTAA
36120514 AATGTGAACATCATTTAA
1 AATGTGAACATCATTTAA
*
36120532 AATCTGAACATCATTTAA
1 AATGTGAACATCATTTAA
36120550 AATGTGAACATCATTT
1 AATGTGAACATCATTT
36120566 CTCACATTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 48 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (18 bp):
AATGTGAACATCATTTAA
Found at i:36122007 original size:11 final size:10
Alignment explanation
Indices: 36121991--36122030 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
36121981 AGGGAAGTCT
36121991 ATTTATTTTCC
1 ATTTA-TTTCC
*
36122002 ATTTATTCCC
1 ATTTATTTCC
36122012 ATTTATTTCC
1 ATTTATTTCC
36122022 AATTTATTT
1 -ATTTATTT
36122031 TAAATTTCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 13 0.50
11 13 0.50
ACGTcount: A:0.23, C:0.17, G:0.00, T:0.60
Consensus pattern (10 bp):
ATTTATTTCC
Found at i:36126279 original size:31 final size:31
Alignment explanation
Indices: 36126241--36126302 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
36126231 AAACTTGGGA
36126241 GAATGAGGAAAAGTGACCGAATTGCCACTAC
1 GAATGAGGAAAAGTGACCGAATTGCCACTAC
*
36126272 GAATGAGGAAAAGTGGCCGAATTGCCACTAC
1 GAATGAGGAAAAGTGACCGAATTGCCACTAC
36126303 CAATTTCATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.16
Consensus pattern (31 bp):
GAATGAGGAAAAGTGACCGAATTGCCACTAC
Found at i:36131500 original size:28 final size:28
Alignment explanation
Indices: 36131468--36131526 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
36131458 TGTCTATCGG
36131468 TTGTACTACAGTATCAATATACACTAAC
1 TTGTACTACAGTATCAATATACACTAAC
36131496 TTGTACTACAGTATCAATATACACTAAC
1 TTGTACTACAGTATCAATATACACTAAC
36131524 TTG
1 TTG
36131527 AGTGTTTTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.34
Consensus pattern (28 bp):
TTGTACTACAGTATCAATATACACTAAC
Found at i:36132687 original size:45 final size:45
Alignment explanation
Indices: 36132637--36132938 Score: 389
Period size: 45 Copynumber: 6.8 Consensus size: 45
36132627 TCTACGACAC
*
36132637 AATCTACATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
1 AATCTGCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
* * *
36132682 AATCTACATGTATGATTTCGCCATATCTATGAATCTTCTTCTATG
1 AATCTGCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
* * *
36132727 AATCCGCA-GTATGAGTTCGCTATATCTATGAATCTTCTTCTATG
1 AATCTGCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
* * *
36132771 AATCTACA-ATATGAGTTTGCCATATCTATGAATCTTCTACTATG
1 AATCTGCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
* **
36132815 AAT-TGGCATGTATGAGTTCGCCATATCTATGAATATTCTTTTATG
1 AATCT-GCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
* * *
36132860 AACCTGCATGTATGAGTTCACTATATCTATGAATCTTCTACTAT-
1 AATCTGCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
*
36132904 AAGT-TCGCATGTATGAGTCCGCCATATCTATGAAT
1 AA-TCT-GCATGTATGAGTTCGCCATATCTATGAAT
36132939 TCAATTCTGC
Statistics
Matches: 224, Mismatches: 28, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
43 1 0.00
44 80 0.36
45 142 0.63
46 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (45 bp):
AATCTGCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
Found at i:36132771 original size:89 final size:90
Alignment explanation
Indices: 36132643--36132938 Score: 420
Period size: 89 Copynumber: 3.3 Consensus size: 90
36132633 ACACAATCTA
*
36132643 CATGTATGAGTTCGCCATATCTATGAATCTTCTACTATGAATCTACATGTATGATTTCGCCATAT
1 CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCTACATGTATGATTTCGCCATAT
* *
36132708 CTATGAATCTTCTTCTATGAATCCG
66 CTATGAATCTTCTACTATGAATTCG
* *
36132733 CA-GTATGAGTTCGCTATATCTATGAATCTTCTTCTATGAATCTACA-ATATGAGTTT-GCCATA
1 CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCTACATGTATGA-TTTCGCCATA
*
36132795 TCTATGAATCTTCTACTATGAATTGG
65 TCTATGAATCTTCTACTATGAATTCG
* * * * * * *
36132821 CATGTATGAGTTCGCCATATCTATGAATATTCTTTTATGAACCTGCATGTATGAGTTCACTATAT
1 CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCTACATGTATGATTTCGCCATAT
36132886 CTATGAATCTTCTACTAT-AAGTTCG
66 CTATGAATCTTCTACTATGAA-TTCG
*
36132911 CATGTATGAGTCCGCCATATCTATGAAT
1 CATGTATGAGTTCGCCATATCTATGAAT
36132939 TCAATTCTGC
Statistics
Matches: 184, Mismatches: 17, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
88 36 0.20
89 88 0.48
90 60 0.33
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (90 bp):
CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCTACATGTATGATTTCGCCATAT
CTATGAATCTTCTACTATGAATTCG
Found at i:36132860 original size:133 final size:135
Alignment explanation
Indices: 36132637--36132938 Score: 427
Period size: 133 Copynumber: 2.3 Consensus size: 135
36132627 TCTACGACAC
* *
36132637 AATCTACATGTATGAGTTCGCCATATCTATGAATCTTCTACTATGAATCTACATGTATGATTTCG
1 AATCTACATATATGAGTTCGCCATATCTATGAATCTTCTACTATGAATCTACATGTATGAGTTCG
* *
36132702 CCATATCTATGAATCTTCTTCTATGAATCC-GCA-GTATGAGTTCGCTATATCTATGAATCTTCT
66 CCATATCTATGAATATTCTTCTATGAA-CCTGCATGTATGAGTTCACTATATCTATGAATCTTCT
*
36132765 TCTATG
130 ACTATG
* *
36132771 AATCTACA-ATATGAGTTTGCCATATCTATGAATCTTCTACTATGAAT-TGGCATGTATGAGTTC
1 AATCTACATATATGAGTTCGCCATATCTATGAATCTTCTACTATGAATCT-ACATGTATGAGTTC
*
36132834 GCCATATCTATGAATATTCTTTTATGAACCTGCATGTATGAGTTCACTATATCTATGAATCTTCT
65 GCCATATCTATGAATATTCTTCTATGAACCTGCATGTATGAGTTCACTATATCTATGAATCTTCT
36132899 ACTAT-
130 ACTATG
* * *
36132904 AAGT-TCGCATGTATGAGTCCGCCATATCTATGAAT
1 AA-TCT-ACATATATGAGTTCGCCATATCTATGAAT
36132939 TCAATTCTGC
Statistics
Matches: 150, Mismatches: 12, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
132 3 0.02
133 81 0.54
134 44 0.29
135 22 0.15
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (135 bp):
AATCTACATATATGAGTTCGCCATATCTATGAATCTTCTACTATGAATCTACATGTATGAGTTCG
CCATATCTATGAATATTCTTCTATGAACCTGCATGTATGAGTTCACTATATCTATGAATCTTCTA
CTATG
Found at i:36143408 original size:3 final size:3
Alignment explanation
Indices: 36143400--36143449 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
36143390 CCAAAGAATA
36143400 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
36143448 AA
1 AA
36143450 ACAATTCTCA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:36146950 original size:13 final size:13
Alignment explanation
Indices: 36146932--36146956 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36146922 AAACTATAAA
36146932 AAAAATAAAAAAT
1 AAAAATAAAAAAT
36146945 AAAAATAAAAAA
1 AAAAATAAAAAA
36146957 ATCAAGAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:36151149 original size:2 final size:2
Alignment explanation
Indices: 36151142--36151169 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
36151132 TTGTATTTTA
36151142 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36151170 TCCTACTCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36152283 original size:34 final size:34
Alignment explanation
Indices: 36152245--36152311 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
36152235 AAAAATTATT
36152245 TAAATTACGG-TTTA-GAGTTTTTAAATAAATTAAA
1 TAAATTACGGTTTTATGA--TTTTAAATAAATTAAA
*
36152279 TAAATTAGGGTTTTATGATTTTAAATAAATTAA
1 TAAATTACGGTTTTATGATTTTAAATAAATTAA
36152312 GTTAGGGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 24 0.80
35 4 0.13
36 2 0.07
ACGTcount: A:0.43, C:0.01, G:0.12, T:0.43
Consensus pattern (34 bp):
TAAATTACGGTTTTATGATTTTAAATAAATTAAA
Found at i:36152325 original size:22 final size:24
Alignment explanation
Indices: 36152274--36152345 Score: 94
Period size: 22 Copynumber: 3.0 Consensus size: 24
36152264 TTTAAATAAA
* * *
36152274 TTAAATAAATTAGGGTTTTATGATT
1 TTAAATAAATTAGAG-TTTAGGGTT
36152299 TTAAATAAATTA-AG-TTAGGGTT
1 TTAAATAAATTAGAGTTTAGGGTT
36152321 TTAAATAAATTAGAGTTTAGGGTT
1 TTAAATAAATTAGAGTTTAGGGTT
36152345 T
1 T
36152346 ATAGTTTTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
22 18 0.43
23 2 0.05
24 10 0.24
25 12 0.29
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (24 bp):
TTAAATAAATTAGAGTTTAGGGTT
Found at i:36152345 original size:88 final size:91
Alignment explanation
Indices: 36152253--36152423 Score: 258
Period size: 88 Copynumber: 1.9 Consensus size: 91
36152243 TTTAAATTAC
* *
36152253 GGTTTAGAGTTTTTAAATAAATTAAATAAATTAGGGTTTTATGATTTTAAATAAATTA-AG-TTA
1 GGTTTAGAGTTTTTAAATAAATTAAATAAATTAGGGTTCTAGGATTTTAAATAAATTAGAGTTTA
36152316 GGG-TTTTAAATAAATTAGAGTTTAG
66 GGGTTTTTAAATAAATTAGAGTTTAG
* * * * *
36152341 GGTTTATAGTTTTTAAATAAATTAAGTAAATTAGGGTTCTAGGGTTTTGAATAAATTAGGGTTTA
1 GGTTTAGAGTTTTTAAATAAATTAAATAAATTAGGGTTCTAGGATTTTAAATAAATTAGAGTTTA
36152406 GGGTTTTTAAATAAATTA
66 GGGTTTTTAAATAAATTA
36152424 AGTAAATTAG
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
88 52 0.71
89 1 0.01
90 6 0.08
91 14 0.19
ACGTcount: A:0.37, C:0.01, G:0.19, T:0.43
Consensus pattern (91 bp):
GGTTTAGAGTTTTTAAATAAATTAAATAAATTAGGGTTCTAGGATTTTAAATAAATTAGAGTTTA
GGGTTTTTAAATAAATTAGAGTTTAG
Found at i:36152394 original size:34 final size:33
Alignment explanation
Indices: 36152313--36152575 Score: 170
Period size: 34 Copynumber: 8.3 Consensus size: 33
36152303 ATAAATTAAG
36152313 TTAGGGTTTTAAATAAATTAGAGT---TTAGGGT
1 TTAGGGTTTTAAATAAATTA-AGTAAATTAGGGT
* *
36152344 TTATAGTTTTTAAATAAATTAAGTAAATTAGGGT
1 TTA-GGGTTTTAAATAAATTAAGTAAATTAGGGT
*
36152378 TCTAGGG--TT---T---TGAA-TAAATTAGGGT
1 T-TAGGGTTTTAAATAAATTAAGTAAATTAGGGT
36152403 TTAGGGTTTTTAAATAAATTAAGTAAATTAGGGT
1 TTAGGG-TTTTAAATAAATTAAGTAAATTAGGGT
* * *
36152437 TCTATGGTTTTAAAT-AAGT---TAAATTAAGGT
1 T-TAGGGTTTTAAATAAATTAAGTAAATTAGGGT
* *
36152467 TTATGGTTTTTAGATAAATTAAGTAAATTAGGGT
1 TTA-GGGTTTTAAATAAATTAAGTAAATTAGGGT
*
36152501 TCTAGGATTTTAAATAAATTAA-T---TTAGGGT
1 T-TAGGGTTTTAAATAAATTAAGTAAATTAGGGT
* *** *
36152531 GTAGGGTTTATGGTTAAATTTAATTAAATTAGGGT
1 TTAGGGTTT-TAAATAAA-TTAAGTAAATTAGGGT
*
36152566 TTAGGATTTT
1 TTAGGGTTTT
36152576 TTTAAAATAA
Statistics
Matches: 181, Mismatches: 23, Indels: 53
0.70 0.09 0.21
Matches are distributed among these distances:
24 5 0.03
25 12 0.07
26 3 0.02
27 2 0.01
29 10 0.06
30 32 0.18
31 13 0.07
32 18 0.10
33 7 0.04
34 57 0.31
35 22 0.12
ACGTcount: A:0.35, C:0.01, G:0.21, T:0.43
Consensus pattern (33 bp):
TTAGGGTTTTAAATAAATTAAGTAAATTAGGGT
Found at i:36152412 original size:24 final size:26
Alignment explanation
Indices: 36152362--36152423 Score: 92
Period size: 25 Copynumber: 2.5 Consensus size: 26
36152352 TTTAAATAAA
*
36152362 TTAAGTAAATTAGGGTTCTAGGG-TT
1 TTAAATAAATTAGGGTTCTAGGGTTT
*
36152387 TTGAATAAATTAGGGTT-TAGGGTTT
1 TTAAATAAATTAGGGTTCTAGGGTTT
36152412 TTAAATAAATTA
1 TTAAATAAATTA
36152424 AGTAAATTAG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 5 0.15
25 28 0.85
ACGTcount: A:0.34, C:0.02, G:0.23, T:0.42
Consensus pattern (26 bp):
TTAAATAAATTAGGGTTCTAGGGTTT
Found at i:36152414 original size:59 final size:59
Alignment explanation
Indices: 36152337--36152521 Score: 262
Period size: 59 Copynumber: 3.1 Consensus size: 59
36152327 AAATTAGAGT
* *
36152337 TTAGGGTTTATAGTTTTTAAATAAATTAAGTAAATTAGGGTTCTAGGGTTTTGAATAAA
1 TTAGGGTTTATGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAA
* *
36152396 TTAGGGTTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTATGGTTTTAAATAAGTTAAA
1 TTAGGGTTTATGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTAGGGTTTT--A-AA--TAAA
* * *
36152460 TTAAGGTTTATGGTTTTTAGATAAATTAAGTAAATTAGGGTTCTAGGATTTTAAATAAA
1 TTAGGGTTTATGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAA
36152519 TTA
1 TTA
36152522 ATTTAGGGTG
Statistics
Matches: 112, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
59 56 0.50
61 2 0.02
62 3 0.03
64 51 0.46
ACGTcount: A:0.36, C:0.02, G:0.19, T:0.43
Consensus pattern (59 bp):
TTAGGGTTTATGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAA
Found at i:36152460 original size:30 final size:31
Alignment explanation
Indices: 36152358--36152530 Score: 116
Period size: 30 Copynumber: 5.6 Consensus size: 31
36152348 AGTTTTTAAA
*
36152358 TAAATTAAGTAAATTAGGGTTCTA-GG-GTT
1 TAAATTAAGTAAATTAGGGTTCTATGGTTTT
* *
36152387 T---TGAA-TAAATTAGGGTT-TAGGGTTTTT
1 TAAATTAAGTAAATTAGGGTTCTATGG-TTTT
36152414 AAATAAATTAAGTAAATTAGGGTTCTATGG-TTT
1 ---TAAATTAAGTAAATTAGGGTTCTATGGTTTT
*
36152447 TAAA-TAAGTTAAATTAAGGTT-TATGGTTTTT
1 TAAATTAAG-TAAATTAGGGTTCTATGG-TTTT
*
36152478 AGATAAATTAAGTAAATTAGGGTTCTA-GGATTT
1 ---TAAATTAAGTAAATTAGGGTTCTATGGTTTT
* * *
36152511 TAAATAAATTAATTTAGGGT
1 TAAATTAAGTAAATTAGGGT
36152531 GTAGGGTTTA
Statistics
Matches: 115, Mismatches: 10, Indels: 37
0.71 0.06 0.23
Matches are distributed among these distances:
24 2 0.02
25 14 0.12
26 3 0.03
27 2 0.02
29 10 0.09
30 33 0.29
31 3 0.03
33 9 0.08
34 29 0.25
35 10 0.09
ACGTcount: A:0.36, C:0.02, G:0.20, T:0.42
Consensus pattern (31 bp):
TAAATTAAGTAAATTAGGGTTCTATGGTTTT
Found at i:36152493 original size:64 final size:63
Alignment explanation
Indices: 36152317--36152575 Score: 285
Period size: 64 Copynumber: 4.1 Consensus size: 63
36152307 ATTAAGTTAG
* **
36152317 GGTTTTAAATAAATTAGAGTTTAGGGTTTATAGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
1 GGTTTTAAATAAATTA-A-ATTAGGGTTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
* *
36152382 GGGTTT---TGAA-TAAATTAGGGTTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
1 GGTTTTAAATAAATTAAATTAGGGTTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
* * * *
36152441 TGGTTTTAAATAAGTTAAATTAAGGTTTATGGTTTTTAGATAAATTAAGTAAATTAGGGTTCTA
1 -GGTTTTAAATAAATTAAATTAGGGTTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
* * * *** *
36152505 GGATTTTAAATAAATTAATTTAGGGTGTAGGGTTTATGGTTAAATTTAATTAAATTAGGGTT-TA
1 GG-TTTTAAATAAATTAAATTAGGGTTTAGGGTTTTTAAATAAA-TTAAGTAAATTAGGGTTCTA
36152569 GGATTTT
1 GG-TTTT
36152576 TTTAAAATAA
Statistics
Matches: 167, Mismatches: 20, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
59 43 0.26
60 6 0.04
61 2 0.01
62 3 0.02
63 4 0.02
64 88 0.53
65 21 0.13
ACGTcount: A:0.35, C:0.01, G:0.21, T:0.43
Consensus pattern (63 bp):
GGTTTTAAATAAATTAAATTAGGGTTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
Found at i:36152914 original size:127 final size:126
Alignment explanation
Indices: 36152631--36153087 Score: 664
Period size: 126 Copynumber: 3.6 Consensus size: 126
36152621 TTGTACCCTT
* * *
36152631 AAAAAATAATTTTGAGAAGACGTTTTTGAACAAATAGTGTGAAAAACGCTTCAAGTAGGATGCAC
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
* * * * * *
36152696 TGTCTGCAAAAATACAGAAAAAAGCTCTCACGTGGACGCTCTTATTCTACAATAGTTCCTG
66 TGTCAGCAAAATTATAGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
* * *
36152757 AAAAAATAATTTTGAGAAGATGTTTTTGAACAAATAGTGTCCAAAACGCTTCAAGCAGGATGCAC
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
*
36152822 TGTCAGCAAAATTATAGAAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCTTG
66 TGTCAGCAAAATTATAG-AAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
* * *
36152884 AAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACCCTTCAAGCAGGATGCAT
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
* * * * *
36152949 TGTTAGCAAAATTATAGAAAAAAGCTCCCACGTGGACGTTCATTTTCAACGGTAGTTCCT-
66 TGTCAGCAAAATTATAGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
* *
36153009 AAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAAATGCTTCAAGCAGGATGCA
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTC-AAAAACGCTTCAAGCAGGATGCA
* *
36153074 ATGTCAGTAAAATT
65 CTGTCAGCAAAATT
36153088 TCTGAAAAAA
Statistics
Matches: 299, Mismatches: 30, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
125 39 0.13
126 145 0.48
127 115 0.38
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (126 bp):
AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
TGTCAGCAAAATTATAGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
Found at i:36153097 original size:253 final size:253
Alignment explanation
Indices: 36152631--36153087 Score: 704
Period size: 253 Copynumber: 1.8 Consensus size: 253
36152621 TTGTACCCTT
* * * * *
36152631 AAAAAATAATTTTGAGAAGACGTTTTTGAACAAATAGTGTGAAAAACGCTTCAAGTAGGATGCAC
1 AAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACCCTTCAAGCAGGATGCAC
* *
36152696 TGTCTGCAAAAATACAGAAAAAAGCTCTCACGTGGACGCTCTTATTCTACAATAGTTCCTGAAAA
66 TGTCTGCAAAAATACAGAAAAAAGCTCCCACGTGGACGCTCTTATTCAACAATAGTTCCTGAAAA
* * *
36152761 AATAATTTTGAGAAGATGTTTTTGAACAAATAGTGTCCAAAACGCTTCAAGCAGGATGCACTGTC
131 AATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAATGTC
36152826 AGCAAAATTATAGAAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCTTG
196 AGCAAAATTATAGAAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCTTG
*
36152884 AAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACCCTTCAAGCAGGATGCAT
1 AAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACCCTTCAAGCAGGATGCAC
* * * **
36152949 TGT-TAGCAAAATTATAGAAAAAAGCTCCCACGTGGACGTTCATT-TTCAACGGTAGTTCCT-AA
66 TGTCT-GCAAAAATACAGAAAAAAGCTCCCACGTGGACGCTC-TTATTCAACAATAGTTCCTGAA
*
36153011 AAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAAATGCTTCAAGCAGGATGCAAT
129 AAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTC-AAAAACGCTTCAAGCAGGATGCAAT
*
36153076 GTCAGTAAAATT
193 GTCAGCAAAATT
36153088 TCTGAAAAAA
Statistics
Matches: 183, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
252 41 0.22
253 140 0.77
254 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (253 bp):
AAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACCCTTCAAGCAGGATGCAC
TGTCTGCAAAAATACAGAAAAAAGCTCCCACGTGGACGCTCTTATTCAACAATAGTTCCTGAAAA
AATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAATGTC
AGCAAAATTATAGAAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCTTG
Found at i:36153102 original size:18 final size:18
Alignment explanation
Indices: 36153079--36153116 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
36153069 ATGCAATGTC
36153079 AGTAAAATTTCTGAAAAA
1 AGTAAAATTTCTGAAAAA
36153097 AGTAAAATTTCTGAAAAA
1 AGTAAAATTTCTGAAAAA
36153115 AG
1 AG
36153117 CTCCTACGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.13, T:0.26
Consensus pattern (18 bp):
AGTAAAATTTCTGAAAAA
Found at i:36158247 original size:19 final size:18
Alignment explanation
Indices: 36158225--36158292 Score: 57
Period size: 19 Copynumber: 3.6 Consensus size: 18
36158215 CATAAATGAA
36158225 AAAATATTAAATAATATTC
1 AAAAT-TTAAATAATATTC
***
36158244 AAAATTTAAAATAA-ACGAAA
1 AAAATTT-AAATAATA--TTC
36158264 AAAATATTAAATAATATTC
1 AAAAT-TTAAATAATATTC
36158283 AAAATTTAAA
1 AAAATTTAAA
36158293 ACAAACCGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 11
0.69 0.11 0.20
Matches are distributed among these distances:
18 8 0.21
19 16 0.42
20 11 0.29
21 3 0.08
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.31
Consensus pattern (18 bp):
AAAATTTAAATAATATTC
Found at i:36158273 original size:39 final size:39
Alignment explanation
Indices: 36158223--36158298 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
36158213 TACATAAATG
*
36158223 AAAAAATATTAAATAATATTCAAAATTTAAAATAAACGA
1 AAAAAATATTAAATAATATTCAAAATTTAAAACAAACGA
36158262 AAAAAATATTAAATAATATTCAAAATTTAAAACAAAC
1 AAAAAATATTAAATAATATTCAAAATTTAAAACAAAC
36158299 CGTTACTATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.64, C:0.07, G:0.01, T:0.28
Consensus pattern (39 bp):
AAAAAATATTAAATAATATTCAAAATTTAAAACAAACGA
Found at i:36160137 original size:54 final size:54
Alignment explanation
Indices: 36160039--36160153 Score: 135
Period size: 54 Copynumber: 2.1 Consensus size: 54
36160029 ATTGTACTGG
** * *
36160039 AAATCTTGTAAGTATAAGGCTGTTATCTTAAATTAGCGAGCTGCAAGATTTC-AA
1 AAATCTTGTAAGTATAAGGCTGGGATCTTAAATTAGCAAACTGCAAGA-TTCGAA
* * *
36160093 AAATCTTGTAAGTATAAGGTTGGGATCTTAAA-TCGTTAAACTGCAAGATTCGAA
1 AAATCTTGTAAGTATAAGGCTGGGATCTTAAATTAG-CAAACTGCAAGATTCGAA
36160147 AAATCTT
1 AAATCTT
36160154 ACAATCTTAA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
53 5 0.10
54 47 0.90
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (54 bp):
AAATCTTGTAAGTATAAGGCTGGGATCTTAAATTAGCAAACTGCAAGATTCGAA
Found at i:36160233 original size:94 final size:92
Alignment explanation
Indices: 36160063--36160245 Score: 226
Period size: 94 Copynumber: 1.9 Consensus size: 92
36160053 TAAGGCTGTT
* * * **
36160063 ATCTTAAATTAGCGAGCTGCAAGATTTCAAAAATCTTGTAAGTATAAGGTTGGGATCTTAAATCG
1 ATCTTAAATTAGCAAGCCGCAAGATTTCAAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATC-
36160128 TTAAACTGCAAGATTCGAAAAATCTTACA
65 -TAAACTGCAAGATTCGAAAAATCTTACA
* *
36160157 ATCTTAAATTGGCAAGCCGCAATA-TTCAAAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATC
1 ATCTTAAATTAGCAAGCCGCAAGATTTC-AAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATC
*
36160221 -AACGAGTCGCAAGATTCGAAAAATC
65 TAA--ACT-GCAAGATTCGAAAAATC
36160246 CTGTAAGTAT
Statistics
Matches: 77, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
91 2 0.03
93 5 0.06
94 70 0.91
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.28
Consensus pattern (92 bp):
ATCTTAAATTAGCAAGCCGCAAGATTTCAAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATCT
AAACTGCAAGATTCGAAAAATCTTACA
Found at i:36160243 original size:54 final size:54
Alignment explanation
Indices: 36160155--36160522 Score: 335
Period size: 54 Copynumber: 6.8 Consensus size: 54
36160145 AAAAATCTTA
* * * *
36160155 CAATCTTAAATTGGCAAGCCGCAATATTCAAAAAATCTTGTAAGTATAAGGCTG
1 CAATCTTAAATCGACAAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGCTG
* * * * *
36160209 CAATCTTAAATCAACGAGTCGCAAGATTCGAAAAATCCTGTAAGTATAAGGTTG
1 CAATCTTAAATCGACAAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGCTG
* * ** * * *
36160263 TAATCTTAAATCGACAAACTACAAGATTTGGAAGATCTTGTAAGTATAAGGCTG
1 CAATCTTAAATCGACAAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGCTG
* * * * * * * * * *
36160317 CGATATTAAATTGACGAGCCGTAATATTTGAAAAATCTTGTAAATATAAGGTTA
1 CAATCTTAAATCGACAAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGCTG
** * *** * *
36160371 TGATCTTAAAGC-AGCAAATTGCAAGATTCAAAAAATCTTATAAGTATAAGGCTG
1 CAATCTTAAATCGA-CAAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGCTG
* * *
36160425 CGATCTTAAATCGACAAGCCACAAGATTTGAAAAATCTTGTAAGTATAAGGCTG
1 CAATCTTAAATCGACAAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGCTG
* * * *
36160479 CAATCTTAAAAT-GACAAACTGCAATATTCAAAAAATCTTGTAAG
1 CAATCTT-AAATCGACAAGCCGCAAGATTCGAAAAATCTTGTAAG
36160523 CAGTGAATTG
Statistics
Matches: 243, Mismatches: 68, Indels: 6
0.77 0.21 0.02
Matches are distributed among these distances:
53 1 0.00
54 237 0.98
55 5 0.02
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (54 bp):
CAATCTTAAATCGACAAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGCTG
Found at i:36160350 original size:108 final size:108
Alignment explanation
Indices: 36160180--36160522 Score: 420
Period size: 108 Copynumber: 3.2 Consensus size: 108
36160170 AAGCCGCAAT
* * * *
36160180 ATTCAAAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATCAACGAGTCGCAAGATTCGAAAAAT
1 ATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATCGACGAGCCGCAAGATTTGAAAAAT
*
36160245 CCTGTAAGTATAAGGTTGTAATCTTAAATCGACAAACTACAAG
66 CTTGTAAGTATAAGGTTGTAATCTTAAATCGACAAACTACAAG
*** * * * * *
36160288 ATTTGGAAGATCTTGTAAGTATAAGGCTGCGATATTAAATTGACGAGCCGTAATATTTGAAAAAT
1 ATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATCGACGAGCCGCAAGATTTGAAAAAT
* * * * * *
36160353 CTTGTAAATATAAGGTTATGATCTTAAAGC-AGCAAATTGCAAG
66 CTTGTAAGTATAAGGTTGTAATCTTAAATCGA-CAAACTACAAG
* * *
36160396 ATTCAAAAAATCTTATAAGTATAAGGCTGCGATCTTAAATCGACAAGCCACAAGATTTGAAAAAT
1 ATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATCGACGAGCCGCAAGATTTGAAAAAT
* * * *
36160461 CTTGTAAGTATAAGGCTGCAATCTTAAAAT-GACAAACTGCAAT
66 CTTGTAAGTATAAGGTTGTAATCTT-AAATCGACAAACTACAAG
36160504 ATTCAAAAAATCTTGTAAG
1 ATTCAAAAAATCTTGTAAG
36160523 CAGTGAATTG
Statistics
Matches: 193, Mismatches: 39, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
107 1 0.01
108 188 0.97
109 4 0.02
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (108 bp):
ATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATCGACGAGCCGCAAGATTTGAAAAAT
CTTGTAAGTATAAGGTTGTAATCTTAAATCGACAAACTACAAG
Found at i:36160433 original size:162 final size:162
Alignment explanation
Indices: 36160155--36160521 Score: 455
Period size: 162 Copynumber: 2.3 Consensus size: 162
36160145 AAAAATCTTA
* * * * *
36160155 CAATCTTAAATTGGCAAGCCGCAATATTCAAAAAATCTTGTAAGTATAAGGCTGCAATCTTAAAT
1 CAATATTAAATTGACAAGCCGCAATATTCAAAAAATCTTGTAAATATAAGGCTACAATCTTAAAG
* * * * * * *
36160220 CAACGAGTCGCAAGATTCGAAAAATCCTGTAAGTATAAGGTTGTAATCTTAAATCGACAAACTAC
66 CAACAAATCGCAAGATTCAAAAAATCCTATAAGTATAAGGCTGCAATCTTAAATCGACAAACCAC
* *
36160285 AAGATTTGGAAGATCTTGTAAGTATAAGGCTG
131 AAGATTTGAAAAATCTTGTAAGTATAAGGCTG
* * * ** * **
36160317 CGATATTAAATTGACGAGCCGTAATATTTGAAAAATCTTGTAAATATAAGGTTATGATCTTAAAG
1 CAATATTAAATTGACAAGCCGCAATATTCAAAAAATCTTGTAAATATAAGGCTACAATCTTAAAG
* * * * *
36160382 CAGCAAATTGCAAGATTCAAAAAATCTTATAAGTATAAGGCTGCGATCTTAAATCGACAAGCCAC
66 CAACAAATCGCAAGATTCAAAAAATCCTATAAGTATAAGGCTGCAATCTTAAATCGACAAACCAC
36160447 AAGATTTGAAAAATCTTGTAAGTATAAGGCTG
131 AAGATTTGAAAAATCTTGTAAGTATAAGGCTG
* * * *
36160479 CAATCTTAAAATGACAAACTGCAATATTCAAAAAATCTTGTAA
1 CAATATTAAATTGACAAGCCGCAATATTCAAAAAATCTTGTAA
36160522 GCAGTGAATT
Statistics
Matches: 169, Mismatches: 36, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
162 169 1.00
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.28
Consensus pattern (162 bp):
CAATATTAAATTGACAAGCCGCAATATTCAAAAAATCTTGTAAATATAAGGCTACAATCTTAAAG
CAACAAATCGCAAGATTCAAAAAATCCTATAAGTATAAGGCTGCAATCTTAAATCGACAAACCAC
AAGATTTGAAAAATCTTGTAAGTATAAGGCTG
Found at i:36168984 original size:40 final size:40
Alignment explanation
Indices: 36168886--36169188 Score: 344
Period size: 40 Copynumber: 7.6 Consensus size: 40
36168876 TCCTCGTTCA
* * * * *
36168886 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
36168925 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
36168965 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
36169005 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
36169045 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
36169085 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACG
** * * * *
36169125 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
36169165 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36169189 CAGCATTCAA
Statistics
Matches: 235, Mismatches: 23, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
39 39 0.17
40 184 0.78
41 12 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:36169197 original size:41 final size:41
Alignment explanation
Indices: 36169120--36169197 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
36169110 TTTGTATCTC
* * *
36169120 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
36169161 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
36169198 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:36175331 original size:24 final size:24
Alignment explanation
Indices: 36175299--36175352 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
36175289 AGAGTCTGCC
36175299 GGCGCTGTCCCTTGTGCGGGAGCA
1 GGCGCTGTCCCTTGTGCGGGAGCA
36175323 GGCGCTGTCCCTTGTGCGGGAGCA
1 GGCGCTGTCCCTTGTGCGGGAGCA
36175347 GGCGCT
1 GGCGCT
36175353 ACACTCTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.07, C:0.30, G:0.43, T:0.20
Consensus pattern (24 bp):
GGCGCTGTCCCTTGTGCGGGAGCA
Found at i:36177000 original size:79 final size:82
Alignment explanation
Indices: 36176883--36177067 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
36176873 GCTCCTCGTT
* * *
36176883 CAAATGCCTTCGGGACATAGCTCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
36176946 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
36176963 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
36177026 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
36177043 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36177068 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:36177067 original size:40 final size:40
Alignment explanation
Indices: 36176883--36177067 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
36176873 GCTCCTCGTT
* * *
36176883 CAAATGCCTTCGGGACATAGCTCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
36176923 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
36176963 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
36177002 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
36177043 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36177068 CATCATTCAA
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 79 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:36179888 original size:90 final size:90
Alignment explanation
Indices: 36179753--36180028 Score: 295
Period size: 90 Copynumber: 3.1 Consensus size: 90
36179743 ACCTCAAAAA
* * * ** * * *
36179753 TTGTAGGTTAATACGCTACTAGATGGATGTGAATGCACAACATATTTGTATATGAGAGCTGCTAG
1 TTGTAGGTTAATACGCTGCCAGATGGTTGTGAATGCACAACATATTTACAGATAAGAGCTGCCAG
**
36179818 AATGTGGGTGGATAAACCATCGA-TG
66 AAAATGGGTGGATAAACCA-CGAGTG
* * *
36179843 TTGTAGGTTAATATGCTGCCAGATGGTTATGAATGCACAACATATTTACAGATAAGAGTTGCCAG
1 TTGTAGGTTAATACGCTGCCAGATGGTTGTGAATGCACAACATATTTACAGATAAGAGCTGCCAG
* *
36179908 AAAATGGGTGGATGAACCACTAGTG
66 AAAATGGGTGGATAAACCACGAGTG
* * **
36179933 TTGTAGGTTAAAACGCTGCCAGATGTTTGTGAATGCACAATGTATTT-CTAGATAAGAGCTGCCA
1 TTGTAGGTTAATACGCTGCCAGATGGTTGTGAATGCACAACATATTTAC-AGATAAGAGCTGCCA
* ** * * *
36179997 AAAAATCTGTGGATGAACCACCAGAG
65 GAAAATGGGTGGATAAACCACGAGTG
36180023 TTGTAG
1 TTGTAG
36180029 ATTATTAAAC
Statistics
Matches: 157, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
89 3 0.02
90 154 0.98
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (90 bp):
TTGTAGGTTAATACGCTGCCAGATGGTTGTGAATGCACAACATATTTACAGATAAGAGCTGCCAG
AAAATGGGTGGATAAACCACGAGTG
Found at i:36180141 original size:19 final size:19
Alignment explanation
Indices: 36180082--36180141 Score: 51
Period size: 19 Copynumber: 3.4 Consensus size: 19
36180072 CCATGCAATG
36180082 CAATATGCTTATAACAGAT
1 CAATATGCTTATAACAGAT
*
36180101 CAATA--CAGTAGT-A-A-AT
1 CAATATGC-TTA-TAACAGAT
36180117 -AATATGCTTATAACAGAT
1 CAATATGCTTATAACAGAT
36180135 CAATATG
1 CAATATG
36180142 GCAACAATAG
Statistics
Matches: 31, Mismatches: 2, Indels: 16
0.63 0.04 0.33
Matches are distributed among these distances:
15 5 0.16
16 5 0.16
17 4 0.13
18 5 0.16
19 12 0.39
ACGTcount: A:0.45, C:0.13, G:0.12, T:0.30
Consensus pattern (19 bp):
CAATATGCTTATAACAGAT
Found at i:36180157 original size:34 final size:33
Alignment explanation
Indices: 36180083--36180174 Score: 89
Period size: 34 Copynumber: 2.7 Consensus size: 33
36180073 CATGCAATGC
* *
36180083 AATATGCTTATAACAGATCAATACAGTAGTAAAT
1 AATATGCTTATAACAGATCAATATAGCAG-AAAT
*
36180117 AATATGCTTATAACAGATCAATATGGCA-ACAAT
1 AATATGCTTATAACAGATCAATATAGCAGA-AAT
* *
36180150 AGGTATGCTTTTAACTA-ATCAATAT
1 A-ATATGCTTATAAC-AGATCAATAT
36180175 TGTAGCACAA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
32 1 0.02
33 4 0.08
34 44 0.88
35 1 0.02
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.32
Consensus pattern (33 bp):
AATATGCTTATAACAGATCAATATAGCAGAAAT
Found at i:36187137 original size:14 final size:15
Alignment explanation
Indices: 36187109--36187143 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
36187099 TATTATTGGA
*
36187109 GTTTATAAAATAATT
1 GTTTATAAAAAAATT
36187124 GTTT-TAAAAAAATT
1 GTTTATAAAAAAATT
36187138 GTTTAT
1 GTTTAT
36187144 TTTAAAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (15 bp):
GTTTATAAAAAAATT
Found at i:36188993 original size:522 final size:521
Alignment explanation
Indices: 36187999--36189043 Score: 1524
Period size: 522 Copynumber: 2.0 Consensus size: 521
36187989 ATGGTTTCAG
* *
36187999 ATTAAACAAACTAGCATTGGGTTTATGGACAAGCCACATATTTACAGTTACTGCCACTTATTGTG
1 ATTAAACAAACTACCACTGGGTTTATGGACAAGCCACATATTTACAGTTACTGCCACTTATTGTG
* * * *
36188064 AGTGCACAACATATTCGCATATTAAACAAATTGCCACTGGGTTTTGTAGACGAGCCACCACTTGT
66 AGTGCACAACATATTCACAAATTAAACAAACTGCCACTGGATTTTGTAGACGAGCCACCACTTGT
* * * * *
36188129 TTGCAGATTTAATAAACTGTTACTCTTCCTCCGTACAATGTCTCATCCCATTCAATGCACTATGT
131 TTGAAGATTTAATAAACTATCACTCTTCCTCCGTACAATGTCTCATCCCATGCAATGCACTATAT
*
36188194 TATGCTATGTAACAAATAAACACTAGTAGTAGATATGTAACATGTAATCAATTTATCACTAACAC
196 CATGCTATGTAACAAATAAACACTAGTAGTAGATATGTAACATGTAATCAATTTATCACTAACAC
* *
36188259 ATAACATGTTTTTCATGTTCTTCATAGGGCAGTAACAATATTATCACTTTCAATTTAACAGTTTC
261 ATAACATGTTTTTCATGTTCTTCACAGGGCAGTAACAATATTATCACTTTAAATTTAACAGTTTC
* *
36188324 ACTTTATCAGAAAACACATAACGTTCACGTATCATGCAAAGTAATAAGGGCATTTAAGGCATTAA
326 ACTTTATCAGAAAACACATAACGTTCACATATCATGCAAAGTAATAAGGGCACTTAAGGCATTAA
* * * * *
36188389 ACACAAATTTCAAAATTCACCCAATATCAGGGACCTAATTGAGCAAGAATAAACTGTAAAAACAA
391 ACACAAATCTCAAAATGCACCCAATATCAGGGACCTAACTGAGAAAGAATAAACTCTAAAAACAA
*
36188454 TTTAGGGATTGTACAGGGATTAAACTGAACATTTCATACTTCTACATAATATTAATAATTTCAAT
456 TTTAGGAATTGTACAGGGATTAAACTGAACA-TTCATACTTCTACATAATATTAATAATTTCAAT
36188519 CA
520 CA
* * **
36188521 ATTAAACAAACTACCACTGGGTTTGTGGACGAGCCACATATTTGTAGTTACTGCCACTTATTGTG
1 ATTAAACAAACTACCACTGGGTTTATGGACAAGCCACATATTTACAGTTACTGCCACTTATTGTG
* *
36188586 AGTGCACAACATATTCACAAATTAAACAAACTGCCACTGGATTTTGTGGATGAGCCACCACTTGT
66 AGTGCACAACATATTCACAAATTAAACAAACTGCCACTGGATTTTGTAGACGAGCCACCACTTGT
* ** *
36188651 TTTAAGATTTAATAAACTATCACTCTTCCTTTGTACAATGTC-CCTCCCCATGCAATGCACTATA
131 TTGAAGATTTAATAAACTATCACTCTTCCTCCGTACAATGTCTCAT-CCCATGCAATGCACTATA
* * * * *
36188715 TCATGCTATGTAAGAAATCATCACTAGTAGTAGATATGTTACATGTACTCAATTTATCACTAACA
195 TCATGCTATGTAACAAATAAACACTAGTAGTAGATATGTAACATGTAATCAATTTATCACTAACA
* * *
36188780 CTTAACATGTTTTTCATGTTCTTCGCA-CG-ATGATAACAATATTATCACTTTAAATTTAACAGT
260 CATAACATGTTTTTCATGTTCTTCACAGGGCA-G-TAACAATATTATCACTTTAAATTTAACAGT
** * * *
36188843 TTCACTTTATCAGAAAACACATAATTTTCACATATCATGCGATGTAATGAGGGCACTTAAGGCAT
323 TTCACTTTATCAGAAAACACATAACGTTCACATATCATGCAAAGTAATAAGGGCACTTAAGGCAT
* * * *
36188908 TAAACCCAAATCTCATAATGCACCTAATATCCGGGACCTAACTGAGTAAAG-ATAAACTCTAAAA
388 TAAACACAAATCTCAAAATGCACCCAATATCAGGGACCTAACTGAG-AAAGAATAAACTCTAAAA
* * *
36188972 ATAATTTAGAGAATT-TACAGGGATTAAATTGAACATTCATACTTTTACATAATATTAATAATTT
452 ACAATTTAG-GAATTGTACAGGGATTAAACTGAACATTCATACTTCTACATAATATTAATAATTT
*
36189036 CAGTCA
516 CAATCA
36189042 AT
1 AT
36189044 CAATCAATCA
Statistics
Matches: 465, Mismatches: 53, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
520 1 0.00
521 39 0.08
522 418 0.90
523 7 0.02
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (521 bp):
ATTAAACAAACTACCACTGGGTTTATGGACAAGCCACATATTTACAGTTACTGCCACTTATTGTG
AGTGCACAACATATTCACAAATTAAACAAACTGCCACTGGATTTTGTAGACGAGCCACCACTTGT
TTGAAGATTTAATAAACTATCACTCTTCCTCCGTACAATGTCTCATCCCATGCAATGCACTATAT
CATGCTATGTAACAAATAAACACTAGTAGTAGATATGTAACATGTAATCAATTTATCACTAACAC
ATAACATGTTTTTCATGTTCTTCACAGGGCAGTAACAATATTATCACTTTAAATTTAACAGTTTC
ACTTTATCAGAAAACACATAACGTTCACATATCATGCAAAGTAATAAGGGCACTTAAGGCATTAA
ACACAAATCTCAAAATGCACCCAATATCAGGGACCTAACTGAGAAAGAATAAACTCTAAAAACAA
TTTAGGAATTGTACAGGGATTAAACTGAACATTCATACTTCTACATAATATTAATAATTTCAATC
A
Found at i:36191751 original size:17 final size:17
Alignment explanation
Indices: 36191731--36191764 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
36191721 ACTCTAACTA
36191731 ATCAACAATGGTAACAT
1 ATCAACAATGGTAACAT
36191748 ATCAACAATGGTAACAT
1 ATCAACAATGGTAACAT
36191765 CTTAAACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.24
Consensus pattern (17 bp):
ATCAACAATGGTAACAT
Found at i:36199231 original size:24 final size:24
Alignment explanation
Indices: 36199202--36199248 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
36199192 ATGTAGTCTC
36199202 ACTATCCCAGAAATGTAGAGCTTA
1 ACTATCCCAGAAATGTAGAGCTTA
*
36199226 ACTATCTCAGAAATGTAGAGCTT
1 ACTATCCCAGAAATGTAGAGCTT
36199249 CACCAACTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (24 bp):
ACTATCCCAGAAATGTAGAGCTTA
Found at i:36209760 original size:21 final size:21
Alignment explanation
Indices: 36209735--36209781 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
36209725 AATAACATGC
*
36209735 CCGTGTGA-TAGAGGCACACGA
1 CCGTGTGACTAGAAG-ACACGA
*
36209756 TCGTGTGACTAGAAGACACGA
1 CCGTGTGACTAGAAGACACGA
36209777 CCGTG
1 CCGTG
36209782 CGCGATCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.28, C:0.23, G:0.32, T:0.17
Consensus pattern (21 bp):
CCGTGTGACTAGAAGACACGA
Found at i:36212674 original size:53 final size:53
Alignment explanation
Indices: 36212624--36212729 Score: 167
Period size: 53 Copynumber: 2.0 Consensus size: 53
36212614 TCGATAAATT
* *
36212624 GTATGCTTCCACAAAACGTTTTTCTTTAAAAATGACGGTTTACGCAATAAAGG
1 GTATGCTTCCAAAAAACATTTTTCTTTAAAAATGACGGTTTACGCAATAAAGG
* * *
36212677 GTATGCTTCCAAAAAATATTTTTCTTTAAAAATGACGGTTTACACAACAAAGG
1 GTATGCTTCCAAAAAACATTTTTCTTTAAAAATGACGGTTTACGCAATAAAGG
36212730 TTTTTCTAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (53 bp):
GTATGCTTCCAAAAAACATTTTTCTTTAAAAATGACGGTTTACGCAATAAAGG
Found at i:36217394 original size:24 final size:24
Alignment explanation
Indices: 36217367--36217426 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
36217357 GGGTTACAAA
*
36217367 AAGATGAAAGGT-AAAGAGTTAATG
1 AAGATGAAAGGTGAAAG-GTTAACG
36217391 AAGATGAAAGGTGAAAGGTTAACG
1 AAGATGAAAGGTGAAAGGTTAACG
36217415 AAGATGAAAGGT
1 AAGATGAAAGGT
36217427 TGAACATCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
24 30 0.88
25 4 0.12
ACGTcount: A:0.48, C:0.02, G:0.32, T:0.18
Consensus pattern (24 bp):
AAGATGAAAGGTGAAAGGTTAACG
Found at i:36225418 original size:27 final size:27
Alignment explanation
Indices: 36225388--36225442 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
36225378 GTCAGGTACA
36225388 TCCGTATAACCAATCGTACAATTTATG
1 TCCGTATAACCAATCGTACAATTTATG
36225415 TCCGTATAACCAATCGTACAATTTATG
1 TCCGTATAACCAATCGTACAATTTATG
36225442 T
1 T
36225443 AATAATAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.35
Consensus pattern (27 bp):
TCCGTATAACCAATCGTACAATTTATG
Found at i:36231969 original size:14 final size:14
Alignment explanation
Indices: 36231950--36231981 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
36231940 AGGTCATTTA
36231950 GCCCAACCAAACTG
1 GCCCAACCAAACTG
36231964 GCCCAACCAAACTG
1 GCCCAACCAAACTG
36231978 GCCC
1 GCCC
36231982 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:36236778 original size:14 final size:14
Alignment explanation
Indices: 36236759--36236785 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36236749 TCATTTAGCC
36236759 CAACCAAACTGGCT
1 CAACCAAACTGGCT
36236773 CAACCAAACTGGC
1 CAACCAAACTGGC
36236786 CCGGTGATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.37, G:0.15, T:0.11
Consensus pattern (14 bp):
CAACCAAACTGGCT
Found at i:36241900 original size:14 final size:14
Alignment explanation
Indices: 36241881--36241912 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
36241871 AGGTCATTTA
36241881 GCCCAACCAAACTG
1 GCCCAACCAAACTG
36241895 GCCCAACCAAACTG
1 GCCCAACCAAACTG
36241909 GCCC
1 GCCC
36241913 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:36251256 original size:22 final size:20
Alignment explanation
Indices: 36251208--36251256 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
36251198 TCTTAACTAC
*
36251208 TCAAATCCATAGCCAAAACA
1 TCAAATCAATAGCCAAAACA
36251228 TACCAAATCAATATGCCAAAATCA
1 T--CAAATCAATA-GCCAAAA-CA
36251252 TCAAA
1 TCAAA
36251257 CTTACATAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
22 13 0.54
23 7 0.29
24 3 0.12
ACGTcount: A:0.51, C:0.27, G:0.04, T:0.18
Consensus pattern (20 bp):
TCAAATCAATAGCCAAAACA
Found at i:36252063 original size:43 final size:43
Alignment explanation
Indices: 36252016--36252141 Score: 139
Period size: 43 Copynumber: 2.9 Consensus size: 43
36252006 TATAACATAT
* ** *
36252016 CGATGCCACTGTCCTGGATAGGGTCTTACACGA-AATCA-AATAA
1 CGATGCCAATGTCCCAGACAGGGTCTTACAC-ATAATCACAAT-A
*
36252059 CGATGCCAATGTCCCAGACATGGTCTTACACATAATCACAATA
1 CGATGCCAATGTCCCAGACAGGGTCTTACACATAATCACAATA
* * **
36252102 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
1 CGATGCCAATGTCCCAGACAGGGTCTTACACATAATCACA
36252142 TCTCGGTAAC
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
42 1 0.01
43 69 0.95
44 3 0.04
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (43 bp):
CGATGCCAATGTCCCAGACAGGGTCTTACACATAATCACAATA
Found at i:36255845 original size:24 final size:24
Alignment explanation
Indices: 36255815--36255872 Score: 91
Period size: 24 Copynumber: 2.4 Consensus size: 24
36255805 AGTAGTATAC
36255815 GAAGATGAAAGGTG-AAGAGTTAAA
1 GAAGATGAAAGGTGAAAGA-TTAAA
*
36255839 GAAGATGAAAGGTGAAAGATTAAG
1 GAAGATGAAAGGTGAAAGATTAAA
36255863 GAAGATGAAA
1 GAAGATGAAA
36255873 ATTTGAACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 28 0.88
25 4 0.12
ACGTcount: A:0.52, C:0.00, G:0.33, T:0.16
Consensus pattern (24 bp):
GAAGATGAAAGGTGAAAGATTAAA
Found at i:36263785 original size:33 final size:33
Alignment explanation
Indices: 36263737--36263810 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 33
36263727 CTGTGTGTGA
* *
36263737 CACACGGCCTTAGCCATTTTGGGCCATGTGGGC
1 CACACGGGCTAAGCCATTTTGGGCCATGTGGGC
* *
36263770 CACACGGGCTAAGCCATTTTGGGTCGTGTGGGC
1 CACACGGGCTAAGCCATTTTGGGCCATGTGGGC
*
36263803 CATACGGG
1 CACACGGG
36263811 TATATGGGCC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.16, C:0.27, G:0.34, T:0.23
Consensus pattern (33 bp):
CACACGGGCTAAGCCATTTTGGGCCATGTGGGC
Found at i:36267995 original size:25 final size:25
Alignment explanation
Indices: 36267967--36268015 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
36267957 TATATGGGTG
*
36267967 TTAATTTTGGGATTTGACTTTATAA
1 TTAATTTTAGGATTTGACTTTATAA
36267992 TTAATTTTAGGATTTGACTTTATA
1 TTAATTTTAGGATTTGACTTTATA
36268016 TATTTTTCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.04, G:0.14, T:0.53
Consensus pattern (25 bp):
TTAATTTTAGGATTTGACTTTATAA
Found at i:36278313 original size:46 final size:46
Alignment explanation
Indices: 36278261--36278435 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
36278251 TGTAACCCGC
* * *
36278261 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* *
36278307 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCAT
* * * * *
36278357 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* *
36278400 CCACAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
36278436 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 4 0.04
44 2 0.02
46 62 0.58
47 28 0.26
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Found at i:36278375 original size:93 final size:93
Alignment explanation
Indices: 36278269--36278440 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
36278259 GCCCATAAGT
* * * *
36278269 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
36278334 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
36278362 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGTATCCACAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
36278427 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
36278441 CAAATATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:36279755 original size:26 final size:26
Alignment explanation
Indices: 36279726--36279816 Score: 110
Period size: 26 Copynumber: 3.5 Consensus size: 26
36279716 TCAGGATATT
*
36279726 ACACATAGTGTTTAAATCCAACTCGC
1 ACACATAGTGCTTAAATCCAACTCGC
* * * * *
36279752 ACACTTAGTGCTCAGTATCAAATTCGC
1 ACACATAGTGCTTA-AATCCAACTCGC
36279779 ACACATAGTGCTTAAATCCAACTCGC
1 ACACATAGTGCTTAAATCCAACTCGC
*
36279805 ACACTTAGTGCT
1 ACACATAGTGCT
36279817 CAGTATCAAA
Statistics
Matches: 52, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
26 31 0.60
27 21 0.40
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.27
Consensus pattern (26 bp):
ACACATAGTGCTTAAATCCAACTCGC
Found at i:36279781 original size:27 final size:27
Alignment explanation
Indices: 36279748--36279842 Score: 129
Period size: 27 Copynumber: 3.6 Consensus size: 27
36279738 TAAATCCAAC
36279748 TCGCACACTTAGTGCTCAGTATCAAAT
1 TCGCACACTTAGTGCTCAGTATCAAAT
* * * * *
36279775 TCGCACACATAGTGCTTA-AATCCAAC
1 TCGCACACTTAGTGCTCAGTATCAAAT
36279801 TCGCACACTTAGTGCTCAGTATCAAAT
1 TCGCACACTTAGTGCTCAGTATCAAAT
*
36279828 TTGCACACTTAGTGC
1 TCGCACACTTAGTGC
36279843 ATCCCTTAAA
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 21 0.38
27 35 0.62
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
TCGCACACTTAGTGCTCAGTATCAAAT
Found at i:36279806 original size:53 final size:53
Alignment explanation
Indices: 36279726--36279842 Score: 207
Period size: 53 Copynumber: 2.2 Consensus size: 53
36279716 TCAGGATATT
*
36279726 ACACATAGTGTTTAAATCCAACTCGCACACTTAGTGCTCAGTATCAAATTCGC
1 ACACATAGTGCTTAAATCCAACTCGCACACTTAGTGCTCAGTATCAAATTCGC
*
36279779 ACACATAGTGCTTAAATCCAACTCGCACACTTAGTGCTCAGTATCAAATTTGC
1 ACACATAGTGCTTAAATCCAACTCGCACACTTAGTGCTCAGTATCAAATTCGC
*
36279832 ACACTTAGTGC
1 ACACATAGTGC
36279843 ATCCCTTAAA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 61 1.00
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (53 bp):
ACACATAGTGCTTAAATCCAACTCGCACACTTAGTGCTCAGTATCAAATTCGC
Found at i:36280018 original size:32 final size:33
Alignment explanation
Indices: 36279982--36280071 Score: 105
Period size: 32 Copynumber: 2.8 Consensus size: 33
36279972 CTCAATCGGC
* * * *
36279982 TATATCAAACTACACCTAGATACACATTCGA-T
1 TATATCCAACTACACATATATACACATTCAACT
*
36280014 TATATCCAA-TCACACATATATAGACATTCAACT
1 TATATCCAACT-ACACATATATACACATTCAACT
36280047 T-TATCCAACTACACATATATACACA
1 TATATCCAACTACACATATATACACA
36280072 CTTAGTTATG
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
31 1 0.02
32 45 0.92
33 3 0.06
ACGTcount: A:0.42, C:0.26, G:0.03, T:0.29
Consensus pattern (33 bp):
TATATCCAACTACACATATATACACATTCAACT
Found at i:36285726 original size:19 final size:19
Alignment explanation
Indices: 36285684--36285726 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
36285674 TGTGTTGTTG
*
36285684 TTGTTGTTTATTTCGACTC
1 TTGTTGTTTACTTCGACTC
* * *
36285703 ATGTTGTTTACTTGGACTT
1 TTGTTGTTTACTTCGACTC
36285722 TTGTT
1 TTGTT
36285727 TATGTTCTTT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.12, C:0.12, G:0.19, T:0.58
Consensus pattern (19 bp):
TTGTTGTTTACTTCGACTC
Found at i:36285805 original size:19 final size:19
Alignment explanation
Indices: 36285781--36285824 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
36285771 TTGTTGTTGT
*
36285781 TGTTGTTTACTTGGACTCA
1 TGTTGTTTACTTGGACTAA
*
36285800 TGTTGTTTACTTGGGCTAA
1 TGTTGTTTACTTGGACTAA
36285819 TGTTGT
1 TGTTGT
36285825 GTTGTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.14, C:0.11, G:0.25, T:0.50
Consensus pattern (19 bp):
TGTTGTTTACTTGGACTAA
Found at i:36285806 original size:3 final size:3
Alignment explanation
Indices: 36285748--36285787 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
36285738 TATTATAATT
36285748 TTG TTG -TG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
36285788 TACTTGGACT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:36286908 original size:30 final size:30
Alignment explanation
Indices: 36286874--36286935 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
36286864 ACTTATATTA
36286874 TTATTAATTTTGTTATTATTTTAAAGGTAT
1 TTATTAATTTTGTTATTATTTTAAAGGTAT
*
36286904 TTATTAATTTTGTTATTATTTTAGAGGTAT
1 TTATTAATTTTGTTATTATTTTAAAGGTAT
36286934 TT
1 TT
36286936 GCTAATTAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.00, G:0.11, T:0.61
Consensus pattern (30 bp):
TTATTAATTTTGTTATTATTTTAAAGGTAT
Found at i:36286942 original size:30 final size:30
Alignment explanation
Indices: 36286878--36286942 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
36286868 ATATTATTAT
*
36286878 TAATTTTGTTATTATTTTAAAGGTATTTAT
1 TAATTTTGTTATTATTTTAAAGGTATTTAC
* *
36286908 TAATTTTGTTATTATTTTAGAGGTATTTGC
1 TAATTTTGTTATTATTTTAAAGGTATTTAC
36286938 TAATT
1 TAATT
36286943 AAGTTGCATC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.28, C:0.02, G:0.12, T:0.58
Consensus pattern (30 bp):
TAATTTTGTTATTATTTTAAAGGTATTTAC
Found at i:36288519 original size:16 final size:15
Alignment explanation
Indices: 36288500--36288538 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
36288490 ATTTTAAATT
36288500 TTATTATTCGTTTAAA
1 TTATTATTCGTTT-AA
36288516 TTATT-TATCGTTTAA
1 TTATTAT-TCGTTTAA
36288531 TTATTATT
1 TTATTATT
36288539 TAATATTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (15 bp):
TTATTATTCGTTTAA
Found at i:36288540 original size:18 final size:16
Alignment explanation
Indices: 36288492--36288535 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 16
36288482 TTTTTATGAT
*
36288492 TTTAAATTTTATTATTCG
1 TTTAAATTAT-TTA-TCG
36288510 TTTAAATTATTTATCG
1 TTTAAATTATTTATCG
36288526 TTT-AATTATT
1 TTTAAATTATT
36288536 ATTTAATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 7 0.28
16 6 0.24
17 3 0.12
18 9 0.36
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.61
Consensus pattern (16 bp):
TTTAAATTATTTATCG
Found at i:36295588 original size:29 final size:29
Alignment explanation
Indices: 36295555--36295650 Score: 79
Period size: 29 Copynumber: 3.3 Consensus size: 29
36295545 ATTAAAAACA
*
36295555 AATAAATAAAAAATTTTTAATATTAAATT
1 AATAAATAAAAAATTTTCAATATTAAATT
* * * *
36295584 AATAAATATCATACA-TTACAAT-TATAATTT
1 AATAAATA--AAAAATTTTCAATAT-TAAATT
* * *
36295614 ATTTAATAAAAAATTTTGAATATTAAATT
1 AATAAATAAAAAATTTTCAATATTAAATT
36295643 AATAAATA
1 AATAAATA
36295651 TCATACATTA
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
28 3 0.06
29 25 0.52
30 17 0.35
31 3 0.06
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (29 bp):
AATAAATAAAAAATTTTCAATATTAAATT
Found at i:36295607 original size:59 final size:59
Alignment explanation
Indices: 36295544--36295666 Score: 183
Period size: 59 Copynumber: 2.1 Consensus size: 59
36295534 GTTTAAAACT
*
36295544 AATTAAAAACAAATAAATAAAAAATTTTTAATATTAAATTAATAAATATCATACATTAC
1 AATTAAAAACAAATAAATAAAAAATTTTGAATATTAAATTAATAAATATCATACATTAC
* *** * *
36295603 AATTATAATTTATTTAATAAAAAATTTTGAATATTAAATTAATAAATATCATACATTAC
1 AATTAAAAACAAATAAATAAAAAATTTTGAATATTAAATTAATAAATATCATACATTAC
36295662 AATTA
1 AATTA
36295667 TAATTTATTT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.55, C:0.06, G:0.01, T:0.38
Consensus pattern (59 bp):
AATTAAAAACAAATAAATAAAAAATTTTGAATATTAAATTAATAAATATCATACATTAC
Found at i:36295621 original size:34 final size:34
Alignment explanation
Indices: 36295582--36295686 Score: 95
Period size: 34 Copynumber: 3.3 Consensus size: 34
36295572 TAATATTAAA
36295582 TTAATAAATATCATACATTACAATTATAATTTAT
1 TTAATAAATATCATACATTACAATTATAATTTAT
* **
36295616 TTAATAAA-A--A-A-TTTTGAA-TATTAA---A-
1 TTAATAAATATCATACATTACAATTA-TAATTTAT
36295641 TTAATAAATATCATACATTACAATTATAATTTAT
1 TTAATAAATATCATACATTACAATTATAATTTAT
36295675 TTAATAATATAT
1 TTAATAA-ATAT
36295687 TAATTATGAG
Statistics
Matches: 53, Mismatches: 6, Indels: 23
0.65 0.07 0.28
Matches are distributed among these distances:
25 8 0.15
26 2 0.04
28 3 0.06
29 8 0.15
30 8 0.15
31 3 0.06
33 2 0.04
34 15 0.28
35 4 0.08
ACGTcount: A:0.50, C:0.06, G:0.01, T:0.44
Consensus pattern (34 bp):
TTAATAAATATCATACATTACAATTATAATTTAT
Found at i:36295667 original size:59 final size:59
Alignment explanation
Indices: 36295559--36295681 Score: 237
Period size: 59 Copynumber: 2.1 Consensus size: 59
36295549 AAAACAAATA
*
36295559 AATAAAAAATTTTTAATATTAAATTAATAAATATCATACATTACAATTATAATTTATTT
1 AATAAAAAATTTTGAATATTAAATTAATAAATATCATACATTACAATTATAATTTATTT
36295618 AATAAAAAATTTTGAATATTAAATTAATAAATATCATACATTACAATTATAATTTATTT
1 AATAAAAAATTTTGAATATTAAATTAATAAATATCATACATTACAATTATAATTTATTT
36295677 AATAA
1 AATAA
36295682 TATATTAATT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 63 1.00
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (59 bp):
AATAAAAAATTTTGAATATTAAATTAATAAATATCATACATTACAATTATAATTTATTT
Found at i:36296811 original size:20 final size:20
Alignment explanation
Indices: 36296775--36296812 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36296765 TACTTTTAAT
*
36296775 TTTTTCTTTCTTTCTTTTTG
1 TTTTTCTTTATTTCTTTTTG
36296795 TTTTT-TTTATTTACTTTT
1 TTTTTCTTTATTT-CTTTT
36296813 ATTGGTACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.05, C:0.11, G:0.03, T:0.82
Consensus pattern (20 bp):
TTTTTCTTTATTTCTTTTTG
Found at i:36297103 original size:30 final size:29
Alignment explanation
Indices: 36297064--36297120 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
36297054 TACGACCAGA
*
36297064 CACAGGGGCATGTGGCCAAGCCGTGTGAGC
1 CACACGGGCATGTGG-CAAGCCGTGTGAGC
*
36297094 CACACGGGCATGTGGCAGGCCGTGTGA
1 CACACGGGCATGTGGCAAGCCGTGTGA
36297121 TCGGCCGTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.19, C:0.26, G:0.40, T:0.14
Consensus pattern (29 bp):
CACACGGGCATGTGGCAAGCCGTGTGAGC
Done.