Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 102 of 297
Found at i:36654570 original size:42 final size:42
Alignment explanation
Indices: 36654511--36654594 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
36654501 ATTCCTAATT
* * *
36654511 GGGAAAATAGTTCCCTTATTTTAATAAATTGCTAAAACATAA
1 GGGAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAA
36654553 GGGAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAA
1 GGGAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAA
36654595 ACATAAAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.31
Consensus pattern (42 bp):
GGGAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAA
Found at i:36654650 original size:19 final size:18
Alignment explanation
Indices: 36654623--36654666 Score: 70
Period size: 19 Copynumber: 2.4 Consensus size: 18
36654613 AATATGAATA
*
36654623 AAATCTATCTACCTAAAT
1 AAATTTATCTACCTAAAT
36654641 AAGATTTATCTACCTAAAT
1 AA-ATTTATCTACCTAAAT
36654660 AAATTTA
1 AAATTTA
36654667 AAATATATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.45, C:0.16, G:0.02, T:0.36
Consensus pattern (18 bp):
AAATTTATCTACCTAAAT
Found at i:36661319 original size:19 final size:18
Alignment explanation
Indices: 36661297--36661346 Score: 82
Period size: 19 Copynumber: 2.7 Consensus size: 18
36661287 TACTAGAATA
36661297 TAAATAACATTTATCTACC
1 TAAATAA-ATTTATCTACC
36661316 TAAATAAGATTTATCTACC
1 TAAATAA-ATTTATCTACC
36661335 TAAATAAATTTA
1 TAAATAAATTTA
36661347 AAATATATAC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
18 5 0.17
19 25 0.83
ACGTcount: A:0.46, C:0.14, G:0.02, T:0.38
Consensus pattern (18 bp):
TAAATAAATTTATCTACC
Found at i:36661798 original size:48 final size:47
Alignment explanation
Indices: 36661681--36661802 Score: 129
Period size: 47 Copynumber: 2.6 Consensus size: 47
36661671 GATACGTACG
** *
36661681 TATACCATGGCCCGTAGCCAAATCAAGGAAACTTATCCTGAAGTACC
1 TATACCATGGCCCGTAGCCAAATCAAGGAAACTTATCCCAAAATACC
* * * * * *
36661728 TATACAATGACCCATAACCAAATCAAGGTAAC-TATTCTCCAAAATACT
1 TATACCATGGCCCGTAGCCAAATCAAGGAAACTTA-TC-CCAAAATACC
*
36661776 TATACCATGGCCTGTAGCCAAATCAAG
1 TATACCATGGCCCGTAGCCAAATCAAG
36661803 CTATAACTTA
Statistics
Matches: 59, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
46 2 0.03
47 29 0.49
48 28 0.47
ACGTcount: A:0.38, C:0.26, G:0.13, T:0.23
Consensus pattern (47 bp):
TATACCATGGCCCGTAGCCAAATCAAGGAAACTTATCCCAAAATACC
Found at i:36662629 original size:22 final size:24
Alignment explanation
Indices: 36662583--36662631 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
36662573 GCTGAACCTT
* *
36662583 AGGAGGGGATTGTGGAGAGATTTG
1 AGGAGAGGATTGTGGAGAGAGTTG
36662607 AGGAGAGGATT-TGG-GAGAGTTG
1 AGGAGAGGATTGTGGAGAGAGTTG
36662629 AGG
1 AGG
36662632 TGAGAGAGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 10 0.43
23 3 0.13
24 10 0.43
ACGTcount: A:0.27, C:0.00, G:0.51, T:0.22
Consensus pattern (24 bp):
AGGAGAGGATTGTGGAGAGAGTTG
Found at i:36670325 original size:15 final size:16
Alignment explanation
Indices: 36670289--36670325 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
36670279 TTACATTTGT
*
36670289 CTTTTTAGTCCTCTTC
1 CTTTTTAGTCATCTTC
36670305 CTTTTTAGTCATCTTC
1 CTTTTTAGTCATCTTC
36670321 CTTTT
1 CTTTT
36670326 CCTTTTTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.08, C:0.27, G:0.05, T:0.59
Consensus pattern (16 bp):
CTTTTTAGTCATCTTC
Found at i:36670353 original size:23 final size:23
Alignment explanation
Indices: 36670302--36670355 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
36670292 TTTAGTCCTC
*
36670302 TTCC-TTTTTAGTCATCTTCCTT
1 TTCCTTTTTTAGTCATCTTCCCT
36670324 TTCCTTTTTTAGTGCAGT-TTCCCT
1 TTCCTTTTTTAGT-CA-TCTTCCCT
36670348 TT-CTTTTT
1 TTCCTTTTT
36670356 GAGGAATAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 4 0.14
23 14 0.50
24 9 0.32
25 1 0.04
ACGTcount: A:0.07, C:0.24, G:0.07, T:0.61
Consensus pattern (23 bp):
TTCCTTTTTTAGTCATCTTCCCT
Found at i:36676867 original size:54 final size:54
Alignment explanation
Indices: 36676773--36676887 Score: 167
Period size: 54 Copynumber: 2.1 Consensus size: 54
36676763 GGTCATTAAG
* *
36676773 ACCCTCGATTTGTAAAATTACTGAAATACCCCTAGGTTGTAAAATTACTGAAAT
1 ACCCTTGATTTGTAAAATTACCGAAATACCCCTAGGTTGTAAAATTACTGAAAT
* * * * *
36676827 ATCCTTGATTTGTGAAATTACCGAAATACCCTTAGTTTGTAAAATTATTGAAAT
1 ACCCTTGATTTGTAAAATTACCGAAATACCCCTAGGTTGTAAAATTACTGAAAT
36676881 ACCCTTG
1 ACCCTTG
36676888 TAGCATAAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (54 bp):
ACCCTTGATTTGTAAAATTACCGAAATACCCCTAGGTTGTAAAATTACTGAAAT
Found at i:36676885 original size:27 final size:27
Alignment explanation
Indices: 36676781--36676886 Score: 142
Period size: 27 Copynumber: 3.9 Consensus size: 27
36676771 AGACCCTCGA
*
36676781 TTTGTAAAATTACTGAAATACCCCTAG
1 TTTGTAAAATTACTGAAATACCCTTAG
* *
36676808 GTTGTAAAATTACTGAAATATCCTT-G
1 TTTGTAAAATTACTGAAATACCCTTAG
* *
36676834 ATTTGTGAAATTACCGAAATACCCTTAG
1 -TTTGTAAAATTACTGAAATACCCTTAG
*
36676862 TTTGTAAAATTATTGAAATACCCTT
1 TTTGTAAAATTACTGAAATACCCTT
36676887 GTAGCATAAA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.01
27 65 0.97
28 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (27 bp):
TTTGTAAAATTACTGAAATACCCTTAG
Found at i:36676896 original size:27 final size:27
Alignment explanation
Indices: 36676866--36676955 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 27
36676856 CCTTAGTTTG
* * *
36676866 TAAAATTATTGAAATACCCTTGTAGCA
1 TAAAATGACTGAAATACCCCTGTAGCA
* **
36676893 TAAAATGACTGTAATACCCCTGTAGGG
1 TAAAATGACTGAAATACCCCTGTAGCA
* **
36676920 TAAAATGAC-GATAATACCCCTATAGGG
1 TAAAATGACTGA-AATACCCCTGTAGCA
36676947 TAAAATGAC
1 TAAAATGAC
36676956 GATTACGCCC
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
26 1 0.02
27 53 0.98
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.27
Consensus pattern (27 bp):
TAAAATGACTGAAATACCCCTGTAGCA
Found at i:36676909 original size:54 final size:53
Alignment explanation
Indices: 36676784--36676913 Score: 145
Period size: 54 Copynumber: 2.4 Consensus size: 53
36676774 CCCTCGATTT
* *
36676784 GTAAAATTACTGAAATACCCCTAGGTTGTAAAATTACTGAAATATCCTTGATTT
1 GTAAAATTACTGAAATACCCCTAGGTTGTAAAATTACTGAAATACCCTTGA-TA
* * * * *
36676838 GTGAAATTACCGAAATACCCTTAGTTTGTAAAATTATTGAAATACCCTTG-TA
1 GTAAAATTACTGAAATACCCCTAGGTTGTAAAATTACTGAAATACCCTTGATA
* *
36676890 GCATAAAATGACTGTAATACCCCT
1 G--TAAAATTACTGAAATACCCCT
36676914 GTAGGGTAAA
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
52 2 0.03
54 60 0.97
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (53 bp):
GTAAAATTACTGAAATACCCCTAGGTTGTAAAATTACTGAAATACCCTTGATA
Found at i:36676956 original size:27 final size:27
Alignment explanation
Indices: 36676893--36676958 Score: 107
Period size: 27 Copynumber: 2.4 Consensus size: 27
36676883 CCTTGTAGCA
*
36676893 TAAAATGACTG-TAATACCCCTGTAGGG
1 TAAAATGAC-GATAATACCCCTATAGGG
36676920 TAAAATGACGATAATACCCCTATAGGG
1 TAAAATGACGATAATACCCCTATAGGG
36676947 TAAAATGACGAT
1 TAAAATGACGAT
36676959 TACGCCCTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
26 1 0.03
27 36 0.97
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (27 bp):
TAAAATGACGATAATACCCCTATAGGG
Found at i:36677172 original size:26 final size:27
Alignment explanation
Indices: 36677091--36677173 Score: 91
Period size: 27 Copynumber: 3.1 Consensus size: 27
36677081 ATGGTGGAAG
* *
36677091 TACTG-TACTGGTGACTATGTCACATT
1 TACTGATACTGGTGGCTATGCCACATT
* * *
36677117 CACT-ATTATTGGTGGCTATGCCACAAT
1 TACTGA-TACTGGTGGCTATGCCACATT
36677144 TACTGATACTGGTGGCT-TGCCACATT
1 TACTGATACTGGTGGCTATGCCACATT
36677170 TACT
1 TACT
36677174 ATTTCTGGCA
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
26 15 0.33
27 30 0.65
28 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (27 bp):
TACTGATACTGGTGGCTATGCCACATT
Found at i:36677181 original size:26 final size:27
Alignment explanation
Indices: 36677098--36677196 Score: 87
Period size: 27 Copynumber: 3.7 Consensus size: 27
36677088 AAGTACTGTA
* * *
36677098 CTGGTGACTATGTCACATTCACTATTAT
1 CTGGTGGCTATGCCACATTTACTATT-T
* *
36677126 -TGGTGGCTATGCCACAATTACTGA-TA
1 CTGGTGGCTATGCCACATTTACT-ATTT
36677152 CTGGTGGCT-TGCCACATTTACTATTT
1 CTGGTGGCTATGCCACATTTACTATTT
** *
36677178 CTGGCAGCTATGCTACATT
1 CTGGTGGCTATGCCACATT
36677197 ATTATCACTA
Statistics
Matches: 57, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
25 1 0.02
26 20 0.35
27 35 0.61
28 1 0.02
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTATGCCACATTTACTATTT
Found at i:36677400 original size:33 final size:33
Alignment explanation
Indices: 36677363--36677459 Score: 97
Period size: 33 Copynumber: 2.9 Consensus size: 33
36677353 GGCCCACACC
* * *
36677363 GTTACTGTATAGGGTTAAAGCTCAGACTGTTCT
1 GTTACTGTATAGGGCTAAAGCCCAGACTATTCT
* *
36677396 GTTACTATATAGGGCTAAGGCCCAGACTATTCT
1 GTTACTGTATAGGGCTAAAGCCCAGACTATTCT
* * * *
36677429 GATACTGGT-TAGAGCTCAGGCCCAGACTATT
1 GTTACT-GTATAGGGCTAAAGCCCAGACTATT
36677460 ATTGCATGTA
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
33 53 0.98
34 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.31
Consensus pattern (33 bp):
GTTACTGTATAGGGCTAAAGCCCAGACTATTCT
Found at i:36678826 original size:40 final size:40
Alignment explanation
Indices: 36678772--36679045 Score: 262
Period size: 40 Copynumber: 6.8 Consensus size: 40
36678762 AGATAATTAT
* * * *
36678772 CCCTGATTGAACATACGTACCCCTGTTTGTACTTTAGTAC
1 CCCTAATTGCACATACGTGCCCCTGTTTGTACTTTGGTAC
* * * * * *
36678812 CCCTAATTACACATACATGCCCTTGTTTGTACTTCGATAG
1 CCCTAATTGCACATACGTGCCCCTGTTTGTACTTTGGTAC
* * * * *
36678852 CTCTGATTGCACATACTTGCCCCTATTTTTTACTTTGGTAC
1 CCCTAATTGCACATACGTGCCCCT-GTTTGTACTTTGGTAC
*
36678893 CCCTAATTGCACATACTTGCCCCTGTTTGTACTTTGGTAC
1 CCCTAATTGCACATACGTGCCCCTGTTTGTACTTTGGTAC
* *
36678933 CCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGGTAC
1 CCCTAATTGCACATACGTGCCCCTGTTTGTACTTTGGTAC
* * * * * * *
36678973 TCTTGATTGGACATATGTGCCCCTATTTGTACTTCGGTAC
1 CCCTAATTGCACATACGTGCCCCTGTTTGTACTTTGGTAC
* * * *
36679013 CTCTGAA-TGCACTTACGTGCCCTTGTTTATACT
1 CCCT-AATTGCACATACGTGCCCCTGTTTGTACT
36679046 CTAGTAACCC
Statistics
Matches: 190, Mismatches: 42, Indels: 4
0.81 0.18 0.02
Matches are distributed among these distances:
40 156 0.82
41 34 0.18
ACGTcount: A:0.19, C:0.28, G:0.16, T:0.38
Consensus pattern (40 bp):
CCCTAATTGCACATACGTGCCCCTGTTTGTACTTTGGTAC
Found at i:36678935 original size:20 final size:20
Alignment explanation
Indices: 36678912--36679013 Score: 60
Period size: 20 Copynumber: 5.1 Consensus size: 20
36678902 CACATACTTG
*
36678912 CCCCTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTAGGTA
* * * * *
36678932 CCCCTGATTGCACATACGTG
1 CCCCTGTTTGTACTTAGGTA
*
36678952 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTAGGTA
* * * * * * *
36678972 CTCTTGATTGGACATATGTG
1 CCCCTGTTTGTACTTAGGTA
* *
36678992 CCCCTATTTGTACTTCGGTA
1 CCCCTGTTTGTACTTAGGTA
36679012 CC
1 CC
36679014 TCTGAATGCA
Statistics
Matches: 53, Mismatches: 29, Indels: 0
0.65 0.35 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.15, C:0.28, G:0.20, T:0.37
Consensus pattern (20 bp):
CCCCTGTTTGTACTTAGGTA
Found at i:36678996 original size:121 final size:120
Alignment explanation
Indices: 36678772--36679056 Score: 342
Period size: 121 Copynumber: 2.4 Consensus size: 120
36678762 AGATAATTAT
* * * *
36678772 CCCTGATTGAACATACGTACCCCTGTTTGTACTTTAGTACCCCTAATTACACATACATGCCCTTG
1 CCCTAATTGCACATACGTGCCCCTGTTTGTACTTTAGTACCCCTAATTACACATACATGCCCCTG
* *
36678837 TTTGTACTTCGATAGCTCTGATTGCACATACTTGCCCCTATTTTTTACTTTGGTAC
66 TTTGTACTTCGATAGCTCTGATTGCACATACTTGCCCCTA-TTTGTACTTCGGTAC
* * * * *
36678893 CCCTAATTGCACATACTTGCCCCTGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCCTG
1 CCCTAATTGCACATACGTGCCCCTGTTTGTACTTTAGTACCCCTAATTACACATACATGCCCCTG
* *
36678958 TTTGTACTTCGGTA-CTCTTGATTGGACATA-TGTGCCCCTATTTGTACTTCGGTAC
66 TTTGTACTTCGATAGCTC-TGATTGCACATACT-TGCCCCTATTTGTACTTCGGTAC
* * * * * *
36679013 CTCTGAA-TGCACTTACGTGCCCTTGTTTATACTCTAGTAACCCT
1 CCCT-AATTGCACATACGTGCCCCTGTTTGTACTTTAGTACCCCT
36679057 GAATCAATCA
Statistics
Matches: 140, Mismatches: 21, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
120 50 0.36
121 90 0.64
ACGTcount: A:0.19, C:0.28, G:0.15, T:0.37
Consensus pattern (120 bp):
CCCTAATTGCACATACGTGCCCCTGTTTGTACTTTAGTACCCCTAATTACACATACATGCCCCTG
TTTGTACTTCGATAGCTCTGATTGCACATACTTGCCCCTATTTGTACTTCGGTAC
Found at i:36679012 original size:80 final size:79
Alignment explanation
Indices: 36678772--36679045 Score: 296
Period size: 80 Copynumber: 3.4 Consensus size: 79
36678762 AGATAATTAT
* * * * * *
36678772 CCCTGATTGAACATACGTACCCCTGTTTGTACTTTAGTACCCCTAATTACACATACATGCCCTTG
1 CCCTGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTAATTGCACATA-TTGCCCCTG
* *
36678837 TTTGTACTTCGATAG
65 TTTGTACTTCGGTAC
* * * *
36678852 CTCTGATTGCACATACTTGCCCCTATTTTTTACTTTGGTACCCCTAATTGCACATACTTGCCCCT
1 CCCTGATTGCACATACGTGCCCCT-GTTTGTACTTTGGTACCCCTAATTGCACATA-TTGCCCCT
*
36678917 GTTTGTACTTTGGTAC
64 GTTTGTACTTCGGTAC
* * * * * *
36678933 CCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACTCTTGATTGGACATATGTGCCCCTA
1 CCCTGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTAATTGCACATAT-TGCCCCTG
36678998 TTTGTACTTCGGTAC
65 TTTGTACTTCGGTAC
* * * * *
36679013 CTCTGAATGCACTTACGTGCCCTTGTTTATACT
1 CCCTGATTGCACATACGTGCCCCTGTTTGTACT
36679046 CTAGTAACCC
Statistics
Matches: 163, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
79 1 0.01
80 93 0.57
81 69 0.42
ACGTcount: A:0.19, C:0.28, G:0.16, T:0.38
Consensus pattern (79 bp):
CCCTGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTAATTGCACATATTGCCCCTGT
TTGTACTTCGGTAC
Found at i:36685673 original size:48 final size:48
Alignment explanation
Indices: 36685599--36685902 Score: 417
Period size: 48 Copynumber: 6.4 Consensus size: 48
36685589 NNNNNNNNNN
* *
36685599 GAATGGCTACTGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
1 GAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
* *
36685647 GAATGGCTAATGTGAAATATGCATGAGAAATGTATATATGTGGTAAAGCC
1 GAATGGCTAATGTGAAATATGTATGAGATATG--TATATGTGGTAAAGCC
*
36685697 GAATGGCTAATGTGAAATATGTAT--G--A-G-ATA--TGGCAAAGCC
1 GAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
* * * *
36685737 GAATGGCTACTGTGAAATATATATGAGATATGTATATGTGGCAAAGCT
1 GAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
* *
36685785 GAATGGCTAATGTGAAATATGCATGAGAAATGTTTATATGTGGTAAAGCC
1 GAATGGCTAATGTGAAATATGTATGAGATATG--TATATGTGGTAAAGCC
36685835 GAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
1 GAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
36685883 GAATGGCTAATGTGAAATAT
1 GAATGGCTAATGTGAAATAT
36685903 NNNNNNNNNN
Statistics
Matches: 227, Mismatches: 17, Indels: 24
0.85 0.06 0.09
Matches are distributed among these distances:
40 31 0.14
42 4 0.02
44 1 0.00
45 2 0.01
46 4 0.02
48 102 0.45
50 83 0.37
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.30
Consensus pattern (48 bp):
GAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
Found at i:36685847 original size:138 final size:138
Alignment explanation
Indices: 36685599--36685866 Score: 509
Period size: 138 Copynumber: 1.9 Consensus size: 138
36685589 NNNNNNNNNN
*
36685599 GAATGGCTACTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
1 GAATGGCTACTGTGAAATATATATGAGATATGTATATGTGGCAAAGCCGAATGGCTAATGTGAAA
36685664 TATGCATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
66 TATGCATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
36685729 GCAAAGCC
131 GCAAAGCC
*
36685737 GAATGGCTACTGTGAAATATATATGAGATATGTATATGTGGCAAAGCTGAATGGCTAATGTGAAA
1 GAATGGCTACTGTGAAATATATATGAGATATGTATATGTGGCAAAGCCGAATGGCTAATGTGAAA
*
36685802 TATGCATGAGAAATGTTTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
66 TATGCATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
36685867 TATATGTGGT
Statistics
Matches: 127, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
138 127 1.00
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.29
Consensus pattern (138 bp):
GAATGGCTACTGTGAAATATATATGAGATATGTATATGTGGCAAAGCCGAATGGCTAATGTGAAA
TATGCATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
GCAAAGCC
Found at i:36687791 original size:40 final size:40
Alignment explanation
Indices: 36687571--36687782 Score: 352
Period size: 40 Copynumber: 5.3 Consensus size: 40
36687561 NNNNNNNNNN
*
36687571 TATCCGAGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
* * *
36687611 TATCCGGGCTAAGTTCCGGAGAGAATTCGTGCTAGTAATC
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
*
36687651 TATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTAATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
*
36687691 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
* *
36687731 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATA
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
36687771 TATCCGGGCTAA
1 TATCCGGGCTAA
36687783 ACCTCGAAGG
Statistics
Matches: 161, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 161 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
Found at i:36687851 original size:28 final size:28
Alignment explanation
Indices: 36687810--36687890 Score: 92
Period size: 29 Copynumber: 2.9 Consensus size: 28
36687800 GCTGGAGTTA
* *
36687810 TGAGGCACTGTGTGTGCAAGTTCTTCAAC
1 TGAGGCACTATGTGTGCGAGTTCTT-AAC
** *
36687839 TGA-GCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAG-TTCTTAAC
36687867 TGAGGCACTATGTGTGCGAGTTCT
1 TGAGGCACTATGTGTGCGAGTTCT
36687891 CTAATCGAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
28 21 0.49
29 22 0.51
ACGTcount: A:0.21, C:0.16, G:0.31, T:0.32
Consensus pattern (28 bp):
TGAGGCACTATGTGTGCGAGTTCTTAAC
Found at i:36687895 original size:29 final size:28
Alignment explanation
Indices: 36687810--36687913 Score: 97
Period size: 28 Copynumber: 3.7 Consensus size: 28
36687800 GCTGGAGTTA
* * *
36687810 TGAGGCACTGTGTGTGCAAGTTCTTCAAC
1 TGAGGCACTATGTGTGCGAGTTCTT-AAT
**
36687839 TGA-GCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAG-TTCTTAAT
36687867 TGAGGCACTATGTGTGCGAGTTCTCTAAT
1 TGAGGCACTATGTGTGCGAGTTCT-TAAT
*
36687896 CGAGTG--CTATGTGTGCGA
1 TGAG-GCACTATGTGTGCGA
36687914 AATCAGTCAG
Statistics
Matches: 63, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
28 33 0.52
29 29 0.46
30 1 0.02
ACGTcount: A:0.21, C:0.16, G:0.31, T:0.32
Consensus pattern (28 bp):
TGAGGCACTATGTGTGCGAGTTCTTAAT
Found at i:36691497 original size:48 final size:48
Alignment explanation
Indices: 36691435--36691780 Score: 561
Period size: 48 Copynumber: 7.2 Consensus size: 48
36691425 GAAATTGATA
36691435 TATGAGATATGTATATGTGGTAAATG-CGAATGGCTAGTGTGAAATATG
1 TATGAGATATGTATATGTGGTAAA-GCCGAATGGCTAGTGTGAAATATG
36691483 TATGAGATATGTATATGTGGTAAATG-CGAATGGCTAGTGTGAAATATG
1 TATGAGATATGTATATGTGGTAAA-GCCGAATGGCTAGTGTGAAATATG
36691531 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
* *
36691579 TATGAGATATGTATATGTGGTAAAGCCGAATCGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
* * * *
36691627 CATGACAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
1 TATGAGATATG--TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
* *
36691677 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATA
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
36691725 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
*
36691773 TAGGAGAT
1 TATGAGAT
36691781 GTGTGTATAT
Statistics
Matches: 282, Mismatches: 13, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
47 1 0.00
48 237 0.84
50 44 0.16
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
Found at i:36691688 original size:146 final size:144
Alignment explanation
Indices: 36691432--36691772 Score: 560
Period size: 146 Copynumber: 2.4 Consensus size: 144
36691422 GCTGAAATTG
* * *
36691432 ATATATGAGATATGTATATGTGGTAAATG-CGAATGGCTAGTGTGAAATATGTATGAGATATGTA
1 ATATATGAGATATGTATATGTGGTAAA-GCCGAATGGCTAGTGTGAAATATGCATGACAAATGTA
*
36691496 TATGTGGTAAATGCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAA
65 TATGTGGTAAATGCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAA
*
36691561 TGGCTAGTGTGAAAT
130 TGGCTAATGTGAAAT
* * *
36691576 ATGTATGAGATATGTATATGTGGTAAAGCCGAATCGCTAATGTGAAATATGCATGACAAATGTAT
1 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGCATGACAAATG--T
36691641 ATATGTGGTAAA-GCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
64 ATATGTGGTAAATG-CGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
36691705 AATGGCTAATGTGAAAT
128 AATGGCTAATGTGAAAT
36691722 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
36691773 TAGGAGATGT
Statistics
Matches: 182, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
143 1 0.01
144 54 0.30
145 1 0.01
146 126 0.69
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (144 bp):
ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGCATGACAAATGTAT
ATGTGGTAAATGCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
GGCTAATGTGAAAT
Found at i:36694091 original size:48 final size:48
Alignment explanation
Indices: 36693939--36694112 Score: 179
Period size: 48 Copynumber: 3.6 Consensus size: 48
36693929 TATGTGTGCT
* * * *
36693939 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC-ATTATGAGAGCC
1 AGTGTAAAACCATGTCTGGGACATGGCATCGGCCTCGA-CATGAGAGCC
* * * * * * * * * *
36693987 AATGTAAGACCATGTCTAGGATATAGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAAACCATGTCTGGGACATGGCATCGGCCTCGACATGAGAGCC
*
36694035 AGTGTAAAACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCC
1 AGTGTAAAACCATGTCTGGGACATGGCATCGGCCTCGACATGAGAGCC
* *
36694083 AGTCTAAAACCATGTCTGGGACATGACATC
1 AGTGTAAAACCATGTCTGGGACATGGCATC
36694113 AACAATTTAC
Statistics
Matches: 101, Mismatches: 24, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
48 100 0.99
49 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (48 bp):
AGTGTAAAACCATGTCTGGGACATGGCATCGGCCTCGACATGAGAGCC
Found at i:36696352 original size:69 final size:70
Alignment explanation
Indices: 36696220--36696352 Score: 223
Period size: 69 Copynumber: 1.9 Consensus size: 70
36696210 TAGTTTATTA
* * * *
36696220 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
36696285 CTTAG
66 CTTAG
36696290 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
36696353 GTTATGTGCT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 36 0.61
70 23 0.39
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:36697150 original size:39 final size:39
Alignment explanation
Indices: 36697098--36697504 Score: 404
Period size: 39 Copynumber: 10.3 Consensus size: 39
36697088 ATTTGATGTA
* *
36697098 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGGCTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * *
36697137 TATCTGGGCTTAAGGTCCGCAAGCTTCGTGCTGGAATTG
1 TATCCGGGCTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * *
36697176 TATCCGGACTTAAGTTCCGCAAGCTTCGTGCTGGAATTG
1 TATCCGGGCTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * * * *
36697215 TATCCAGGCTTAAAGACCCGCAGGCTAT-ATGCTAGAATTA
1 TATCCGGGCTT-AAGATCCGCAGGCT-TCGTGCTGGAATTG
* *
36697255 TATCCGGGCTTAAAGATCCGCAGGCTTTGTGCTAGAATTG
1 TATCCGGGCTT-AAGATCCGCAGGCTTCGTGCTGGAATTG
* * *
36697295 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTAGAATTG
1 TATCCGGGCTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * * *
36697334 TATCCGGGCTTAAAGACCCACAGGCTTCTTACTGGAATTG
1 TATCCGGGCTT-AAGATCCGCAGGCTTCGTGCTGGAATTG
* * *
36697374 TATCTGGGCTTAAAGACCCACAGGCTTCGTGCTGGAATTG
1 TATCCGGGCTT-AAGATCCGCAGGCTTCGTGCTGGAATTG
* * * * * *
36697414 TATCCAGACTTAAGATCCGTAGGCTTCGTGCTGGTACTA
1 TATCCGGGCTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * * * * *
36697453 TATTCAGACTTAAGGTCCGCAGGCTTCGTACTGGTAA-TA
1 TATCCGGGCTTAAGATCCGCAGGCTTCGTGCTGG-AATTG
*
36697492 TATCCGAGCTTAA
1 TATCCGGGCTTAA
36697505 AGTCCCGTAG
Statistics
Matches: 314, Mismatches: 49, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
39 181 0.58
40 132 0.42
41 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (39 bp):
TATCCGGGCTTAAGATCCGCAGGCTTCGTGCTGGAATTG
Found at i:36697253 original size:40 final size:40
Alignment explanation
Indices: 36697114--36697445 Score: 350
Period size: 40 Copynumber: 8.4 Consensus size: 40
36697104 GACTTAAGGT
* * **
36697114 CCGCAGGCTTCGTGCTGGAATTGTATCTGGGCTT-AAGGT
1 CCGCAGGCTTCGTGCTAGAATTGTATCCGGGCTTAAAGAC
* * * **
36697153 CCGCAAGCTTCGTGCTGGAATTGTATCCGGACTT-AAGTT
1 CCGCAGGCTTCGTGCTAGAATTGTATCCGGGCTTAAAGAC
* * *
36697192 CCGCAAGCTTCGTGCTGGAATTGTATCCAGGCTTAAAGAC
1 CCGCAGGCTTCGTGCTAGAATTGTATCCGGGCTTAAAGAC
* * *
36697232 CCGCAGGCTAT-ATGCTAGAATTATATCCGGGCTTAAAGAT
1 CCGCAGGCT-TCGTGCTAGAATTGTATCCGGGCTTAAAGAC
* * **
36697272 CCGCAGGCTTTGTGCTAGAATTGTATCCGGACTT-AAGGT
1 CCGCAGGCTTCGTGCTAGAATTGTATCCGGGCTTAAAGAC
36697311 CCGCAGGCTTCGTGCTAGAATTGTATCCGGGCTTAAAGAC
1 CCGCAGGCTTCGTGCTAGAATTGTATCCGGGCTTAAAGAC
* * * * *
36697351 CCACAGGCTTCTTACTGGAATTGTATCTGGGCTTAAAGAC
1 CCGCAGGCTTCGTGCTAGAATTGTATCCGGGCTTAAAGAC
* * * * *
36697391 CCACAGGCTTCGTGCTGGAATTGTATCCAGACTT-AAGAT
1 CCGCAGGCTTCGTGCTAGAATTGTATCCGGGCTTAAAGAC
*
36697430 CCGTAGGCTTCGTGCT
1 CCGCAGGCTTCGTGCT
36697446 GGTACTATAT
Statistics
Matches: 254, Mismatches: 35, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
39 122 0.48
40 131 0.52
41 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (40 bp):
CCGCAGGCTTCGTGCTAGAATTGTATCCGGGCTTAAAGAC
Found at i:36697305 original size:119 final size:119
Alignment explanation
Indices: 36697117--36697447 Score: 459
Period size: 119 Copynumber: 2.8 Consensus size: 119
36697107 TTAAGGTCCG
* * *
36697117 CAGGCTTCGTGCTGGAATTGTATCTGGGCTT-AAGGTCCGCAAGCTTCGTGCTGGAATTGTATCC
1 CAGGCTTCATGCTGGAATTGTATCTGGGCTTAAAGATCCGCAGGCTTCGTGCTGGAATTGTATCC
* * *
36697181 GGACTTAAGTTCCGCAAGCTTCGTGCTGGAATTGTATCCAGGCTTAAAGACCCG
66 GGACTTAAGATCCGCAGGCTTCGTGCTGGAATTGTATCCAGGCTTAAAGACCCA
* * * * *
36697235 CAGGCTAT-ATGCTAGAATTATATCCGGGCTTAAAGATCCGCAGGCTTTGTGCTAGAATTGTATC
1 CAGGCT-TCATGCTGGAATTGTATCTGGGCTTAAAGATCCGCAGGCTTCGTGCTGGAATTGTATC
* * *
36697299 CGGACTTAAGGTCCGCAGGCTTCGTGCTAGAATTGTATCCGGGCTTAAAGACCCA
65 CGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTGTATCCAGGCTTAAAGACCCA
* * * *
36697354 CAGGCTTCTTACTGGAATTGTATCTGGGCTTAAAGACCCACAGGCTTCGTGCTGGAATTGTATCC
1 CAGGCTTCATGCTGGAATTGTATCTGGGCTTAAAGATCCGCAGGCTTCGTGCTGGAATTGTATCC
* *
36697419 AGACTTAAGATCCGTAGGCTTCGTGCTGG
66 GGACTTAAGATCCGCAGGCTTCGTGCTGG
36697448 TACTATATTC
Statistics
Matches: 184, Mismatches: 26, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
118 26 0.14
119 158 0.86
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (119 bp):
CAGGCTTCATGCTGGAATTGTATCTGGGCTTAAAGATCCGCAGGCTTCGTGCTGGAATTGTATCC
GGACTTAAGATCCGCAGGCTTCGTGCTGGAATTGTATCCAGGCTTAAAGACCCA
Found at i:36697517 original size:158 final size:157
Alignment explanation
Indices: 36697096--36697518 Score: 494
Period size: 158 Copynumber: 2.7 Consensus size: 157
36697086 ATATTTGATG
* * *
36697096 TATATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTA-TCTGGGCTTAAGGTCCGCAAG
1 TATATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTGTATTC-GGACTTAAGGTCCGCAGG
* * *
36697160 CTTCGTGCTGGAATTGTATCCGGACTT-AAGTTCCGCAAGCTTCGTGCTGGAATTGTATCCAGGC
65 CTTCGTGCTGGAATTGTATCCGG-CTTAAAGTCCCGCAGGCTTCGTACTGGAATTGTATCCAGGC
*
36697224 TTAAAGACCCGCAGGCTATATGCTAGAAT
129 TTAAAGACCCACAGGCTATATGCTAGAAT
* * * *
36697253 TATATCCGGGCTTAAAGATCCGCAGGCTTTGTGCTAGAATTGTATCCGGACTTAAGGTCCGCAGG
1 TATATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAATTGTATTCGGACTTAAGGTCCGCAGG
* * * * **
36697318 CTTCGTGCTAGAATTGTATCCGGGCTTAAAGACCCACAGGCTTCTTACTGGAATTGTATCTGGGC
65 CTTCGTGCTGGAATTGTATCC-GGCTTAAAGTCCCGCAGGCTTCGTACTGGAATTGTATCCAGGC
* *
36697383 TTAAAGACCCACAGGCT-TCGTGCTGGAAT
129 TTAAAGACCCACAGGCTAT-ATGCTAGAAT
* * * * * * *
36697412 TGTATCCAGACTTAAGATCCGTAGGCTTCGTGCTGGTACTATATTCAGACTTAAGGTCCGCAGGC
1 TATATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTGTATTCGGACTTAAGGTCCGCAGGC
* * *
36697477 TTCGTACTGGTAA-TATATCCGAGCTTAAAGTCCCGTAGGCTT
66 TTCGTGCTGG-AATTGTATCCG-GCTTAAAGTCCCGCAGGCTT
36697519 TGTGTTGGTG
Statistics
Matches: 223, Mismatches: 36, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
157 13 0.06
158 142 0.64
159 68 0.30
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (157 bp):
TATATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTGTATTCGGACTTAAGGTCCGCAGGC
TTCGTGCTGGAATTGTATCCGGCTTAAAGTCCCGCAGGCTTCGTACTGGAATTGTATCCAGGCTT
AAAGACCCACAGGCTATATGCTAGAAT
Found at i:36702129 original size:68 final size:67
Alignment explanation
Indices: 36702057--36702206 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
36702047 CATCATGTGT
* * * *
36702057 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
36702119 ATGTAG
62 ATGTAG
** * *
36702125 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
36702190 AG
66 AG
36702192 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
36702207 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:36702162 original size:64 final size:64
Alignment explanation
Indices: 36702081--36702264 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
36702071 AGACATTATG
* *
36702081 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
36702145 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
36702210 AA
63 AA
* * * *
36702212 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
36702265 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:36704668 original size:15 final size:17
Alignment explanation
Indices: 36704638--36704669 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
36704628 ATAATACTTG
36704638 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
36704655 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
36704670 AATTATGCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:36707546 original size:2 final size:2
Alignment explanation
Indices: 36707541--36707573 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
36707531 TATATATATA
*
36707541 TG TG TG TG TG TG TG TG CG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
36707574 ATATATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.03, G:0.48, T:0.48
Consensus pattern (2 bp):
TG
Found at i:36707791 original size:29 final size:29
Alignment explanation
Indices: 36707758--36707815 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
36707748 TGAGGTGAGC
*
36707758 TTTATGTTTAAACCATATGAACTTACTAA
1 TTTATGTTTAAAACATATGAACTTACTAA
36707787 TTTATGTTTAAAACATATGAACTTACTAA
1 TTTATGTTTAAAACATATGAACTTACTAA
36707816 GCATATTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.41
Consensus pattern (29 bp):
TTTATGTTTAAAACATATGAACTTACTAA
Found at i:36711342 original size:14 final size:14
Alignment explanation
Indices: 36711318--36711350 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
36711308 ATAATTACTC
36711318 TATTT-CTAATTTA
1 TATTTACTAATTTA
36711331 TATTTACTAATTTA
1 TATTTACTAATTTA
36711345 TATTTA
1 TATTTA
36711351 TTTTTTCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (14 bp):
TATTTACTAATTTA
Found at i:36714262 original size:19 final size:18
Alignment explanation
Indices: 36714200--36714260 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 18
36714190 GCCCTCTTAC
36714200 TATATTATATAATGT-TATA
1 TATATTATAT-A-GTATATA
36714219 TCATATTATATAGTATATA
1 T-ATATTATATAGTATATA
*
36714238 CTATATTA-ATAGTTTATA
1 -TATATTATATAGTATATA
36714256 TATAT
1 TATAT
36714261 ATGGATCAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
17 5 0.13
18 11 0.29
19 12 0.32
20 10 0.26
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (18 bp):
TATATTATATAGTATATA
Found at i:36714606 original size:241 final size:238
Alignment explanation
Indices: 36714099--36714565 Score: 635
Period size: 241 Copynumber: 2.0 Consensus size: 238
36714089 GTAGTATGTA
* * * * *
36714099 ATATATTAATTAGTACCATATATTATTGTTTATTATTATATTGGTTGAAATATGCTCTAAATCCC
1 ATATATTACTTATTATCATATATTA-T-TTTATTATTATATTAGTTGAAATATGATCTAAATCCC
* *
36714164 TATACTTTTAGCATATTTGAAAGTTAGCCCTCTTACTATATTATATAATGTTATATCATATTATA
64 TATACTTTTAGCACATTTGAAAGTTAGCCCTCCTACTATATTATATAATGTTATATCA-ATTATA
* * * *
36714229 TAGTATATACTATATTAATAGTTTATATATATATGGATCAATGACTAAGCATTATAATATCATGT
128 CAGTATATACTATATTAATAGTTTATACATATATGCATCAATGACTAAACATTATAATATCATGT
*
36714294 AATACTATATCATTTATTATAATCCATATTATAATAATAGTACATT
193 AATACTATATCATTTATTATAATACATATTATAATAATAGTACATT
* *
36714340 ATATATTACTTATTATCATATATTATCATTTATTATTATATTAGTTGAAATATGATCTAATTCTC
1 ATATATTACTTATTATCATATATTAT--TTTATTATTATATTAGTTGAAATATGATCTAAATCCC
* * * * *
36714405 TATACTTTTCGTACATTTGAAAGTTAGCTCTCCTATTATATTATATAATGTTGTATC-A-TAT-C
64 TATACTTTTAGCACATTTGAAAGTTAGCCCTCCTACTATATTATATAATGTTATATCAATTATAC
*
36714467 A-TATA-A-TATATTAATAG-TT-TACATATATGCATCAATGACTAAATATTATAATATCATGTA
129 AGTATATACTATATTAATAGTTTATACATATATGCATCAATGACTAAACATTATAATATCATGTA
* *
36714527 ATACTATATCTTTTATTATAATATATATTATAATAATAG
194 ATACTATATCATTTATTATAATACATATTATAATAATAG
36714566 GTATATATGT
Statistics
Matches: 202, Mismatches: 23, Indels: 11
0.86 0.10 0.05
Matches are distributed among these distances:
232 73 0.36
233 2 0.01
234 11 0.05
235 1 0.00
236 4 0.02
237 1 0.00
238 3 0.01
239 1 0.00
240 1 0.00
241 105 0.52
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.45
Consensus pattern (238 bp):
ATATATTACTTATTATCATATATTATTTTATTATTATATTAGTTGAAATATGATCTAAATCCCTA
TACTTTTAGCACATTTGAAAGTTAGCCCTCCTACTATATTATATAATGTTATATCAATTATACAG
TATATACTATATTAATAGTTTATACATATATGCATCAATGACTAAACATTATAATATCATGTAAT
ACTATATCATTTATTATAATACATATTATAATAATAGTACATT
Found at i:36719116 original size:16 final size:16
Alignment explanation
Indices: 36719095--36719163 Score: 61
Period size: 16 Copynumber: 4.3 Consensus size: 16
36719085 GTTATTTGAT
36719095 AACAACTAAAGTTTAG
1 AACAACTAAAGTTTAG
***
36719111 AACAACTCTTGTTTAG
1 AACAACTAAAGTTTAG
*
36719127 AATAAC-AAAGTTTTAGG
1 AACAACTAAAG-TTTA-G
*
36719144 AACAACT-ATGTTTAG
1 AACAACTAAAGTTTAG
36719159 AACAA
1 AACAA
36719164 TCATTGTTTA
Statistics
Matches: 41, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
15 7 0.17
16 26 0.63
17 8 0.20
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.29
Consensus pattern (16 bp):
AACAACTAAAGTTTAG
Found at i:36719171 original size:16 final size:15
Alignment explanation
Indices: 36719138--36719184 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
36719128 ATAACAAAGT
36719138 TTTAGGAACAA-CTATG
1 TTTA-GAACAATCT-TG
36719154 TTTAGAACAATCATTG
1 TTTAGAACAATC-TTG
36719170 TTTAGAACAAT-TTG
1 TTTAGAACAATCTTG
36719184 T
1 T
36719185 ATTTTGAGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 4 0.14
15 6 0.21
16 18 0.62
17 1 0.03
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (15 bp):
TTTAGAACAATCTTG
Found at i:36719343 original size:17 final size:17
Alignment explanation
Indices: 36719318--36719354 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
36719308 AAGTTAAAAT
*
36719318 AACTATTATTCAAGAAC
1 AACTATTATCCAAGAAC
*
36719335 AACTCTTATCCAAGAAC
1 AACTATTATCCAAGAAC
36719352 AAC
1 AAC
36719355 CATTGTCTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.24, G:0.05, T:0.24
Consensus pattern (17 bp):
AACTATTATCCAAGAAC
Found at i:36738181 original size:93 final size:93
Alignment explanation
Indices: 36738068--36738239 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
36738058 CGCCCATAAG
* *
36738068 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
36738133 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
36738161 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
36738226 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
36738240 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:36738236 original size:46 final size:46
Alignment explanation
Indices: 36738061--36738236 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
36738051 TGTAACCCGC
* * *
36738061 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
36738107 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
36738157 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
36738200 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
36738237 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:36748110 original size:27 final size:27
Alignment explanation
Indices: 36748080--36748147 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
36748070 TTGAGAAAGT
*
36748080 AAACACAGGGTAGTCTG-CCGAGACATC
1 AAACACAGGGTAGTCTGCCCGA-ACAAC
*
36748107 AAACACTGGGTAGTCTGCCCGAACAAC
1 AAACACAGGGTAGTCTGCCCGAACAAC
* *
36748134 AAATACAGCGTAGT
1 AAACACAGGGTAGT
36748148 GATCACCTCT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 31 0.89
28 4 0.11
ACGTcount: A:0.35, C:0.25, G:0.24, T:0.16
Consensus pattern (27 bp):
AAACACAGGGTAGTCTGCCCGAACAAC
Found at i:36754286 original size:16 final size:16
Alignment explanation
Indices: 36754261--36754298 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
36754251 AATTTACAGG
*
36754261 GAAAAATTGAGAATAT
1 GAAAAGTTGAGAATAT
36754277 GAAAAGTTGAGAATAT
1 GAAAAGTTGAGAATAT
36754293 GAAAAG
1 GAAAAG
36754299 CTGTCCCCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.55, C:0.00, G:0.24, T:0.21
Consensus pattern (16 bp):
GAAAAGTTGAGAATAT
Found at i:36765401 original size:29 final size:28
Alignment explanation
Indices: 36765322--36765456 Score: 137
Period size: 29 Copynumber: 4.8 Consensus size: 28
36765312 TACATACATG
* *
36765322 CATATGGCCCATTATGCCCAATCTCATT
1 CATATGGCCCATCAGGCCCAATCTCATT
* * * *
36765350 TATATGGCCCATCCGACCTAAT-TCACGTT
1 CATATGGCCCATCAGGCCCAATCTCA--TT
*
36765379 CATATGGCCCATCAGGCCCAATTCACATT
1 CATATGGCCCATCAGGCCCAA-TCTCATT
*
36765408 CATATGGCCCATTAGGCCCAATCTCATT
1 CATATGGCCCATCAGGCCCAATCTCATT
* * *
36765436 TATATGGTCCATCTGGCCCAA
1 CATATGGCCCATCAGGCCCAA
36765457 ATCATATTAT
Statistics
Matches: 86, Mismatches: 17, Indels: 8
0.77 0.15 0.07
Matches are distributed among these distances:
27 3 0.03
28 39 0.45
29 41 0.48
30 1 0.01
31 2 0.02
ACGTcount: A:0.25, C:0.32, G:0.14, T:0.29
Consensus pattern (28 bp):
CATATGGCCCATCAGGCCCAATCTCATT
Found at i:36765441 original size:57 final size:56
Alignment explanation
Indices: 36765322--36765456 Score: 137
Period size: 57 Copynumber: 2.4 Consensus size: 56
36765312 TACATACATG
* * * * * *
36765322 CATATGGCCCATTATGCCCAATCTCATTTATATGGCCCATCCGACCTAATTCACGTT
1 CATATGGCCCATCAGGCCCAATCACATTCATATGGCCCATCAGACCCAATTCAC-TT
* *
36765379 CATATGGCCCATCAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATCTCA-TT
1 CATATGGCCCATCAGGCCCAA-TCACATTCATATGGCCCATCAGACCCAAT-TCACTT
* * *
36765436 TATATGGTCCATCTGGCCCAA
1 CATATGGCCCATCAGGCCCAA
36765457 ATCATATTAT
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
57 39 0.60
58 23 0.35
59 3 0.05
ACGTcount: A:0.25, C:0.32, G:0.14, T:0.29
Consensus pattern (56 bp):
CATATGGCCCATCAGGCCCAATCACATTCATATGGCCCATCAGACCCAATTCACTT
Found at i:36772180 original size:55 final size:55
Alignment explanation
Indices: 36772113--36772302 Score: 226
Period size: 55 Copynumber: 3.5 Consensus size: 55
36772103 GCAAGGAAAT
*
36772113 CATGTAAGACCATGTCAA-GACATGGCATTGATAAACTACAATAAGGTAAAGATCC
1 CATGTAAGACCATGCCAATG-CATGGCATTGATAAACTACAATAAGGTAAAGATCC
* * * * * * * * *
36772168 CATGTAAGACCATGCCAATGCATGGCAATGGT-GAGTTC-ATAAAGCAAGGATAC
1 CATGTAAGACCATGCCAATGCATGGCATTGATAAACTACAATAAGGTAAAGATCC
* *
36772221 CACGTAAGACCATGTCAA-GACATGGCATTGATAAACTACAATAAGGTAAAGATCC
1 CATGTAAGACCATGCCAATG-CATGGCATTGATAAACTACAATAAGGTAAAGATCC
36772276 CATGTAAGACCATGCCAATGCATGGCA
1 CATGTAAGACCATGCCAATGCATGGCA
36772303 ATGGTGAGTT
Statistics
Matches: 107, Mismatches: 23, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
52 1 0.01
53 37 0.35
54 6 0.06
55 61 0.57
56 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.21
Consensus pattern (55 bp):
CATGTAAGACCATGCCAATGCATGGCATTGATAAACTACAATAAGGTAAAGATCC
Found at i:36772245 original size:53 final size:53
Alignment explanation
Indices: 36772053--36772365 Score: 263
Period size: 53 Copynumber: 5.8 Consensus size: 53
36772043 TAGGGTTTAT
* * * *
36772053 GGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTT-TTACAAGGCAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATA-AA-GCAA
* * * * * * * * *
36772107 GGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACAATAAGGTAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAAGCAA
* * *
36772162 AGATCCCATGTAAGACCATGCCAATG-CATGGCAATGGTGAGTTCATAAAGCAA
1 GGATACCATGTAAGACCATGCCAA-GACATGGCAATGGTAAGTTCATAAAGCAA
* * * * * * * *
36772215 GGATACCACGTAAGACCATGTCAAGACATGGCATTGATAAACTACAATAAGGTAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAAGCAA
* * *
36772270 AGATCCCATGTAAGACCATGCCAATG-CATGGCAATGGTGAGTTCATAAAGCAA
1 GGATACCATGTAAGACCATGCCAA-GACATGGCAATGGTAAGTTCATAAAGCAA
* * *
36772323 GGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
36772366 TAAAAAGGAA
Statistics
Matches: 199, Mismatches: 51, Indels: 19
0.74 0.19 0.07
Matches are distributed among these distances:
52 2 0.01
53 79 0.40
54 41 0.21
55 72 0.36
56 3 0.02
57 2 0.01
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (53 bp):
GGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAAGCAA
Found at i:36772252 original size:108 final size:108
Alignment explanation
Indices: 36772062--36772353 Score: 496
Period size: 108 Copynumber: 2.7 Consensus size: 108
36772052 TGGATACCAA
* * * * * * *
36772062 GTAAGACCATGCCAAGGCATGGCATTGGTAAGTT-TTACAAGGCAAGGAAATCATGTAAGACCAT
1 GTAAGACCATGCCAATGCATGGCAATGGTGAGTTCATA-AA-GCAAGGATACCACGTAAGACCAT
36772126 GTCAAGACATGGCATTGATAAACTACAATAAGGTAAAGATCCCAT
64 GTCAAGACATGGCATTGATAAACTACAATAAGGTAAAGATCCCAT
36772171 GTAAGACCATGCCAATGCATGGCAATGGTGAGTTCATAAAGCAAGGATACCACGTAAGACCATGT
1 GTAAGACCATGCCAATGCATGGCAATGGTGAGTTCATAAAGCAAGGATACCACGTAAGACCATGT
36772236 CAAGACATGGCATTGATAAACTACAATAAGGTAAAGATCCCAT
66 CAAGACATGGCATTGATAAACTACAATAAGGTAAAGATCCCAT
36772279 GTAAGACCATGCCAATGCATGGCAATGGTGAGTTCATAAAGCAAGGATACCACGTAAGACCATGT
1 GTAAGACCATGCCAATGCATGGCAATGGTGAGTTCATAAAGCAAGGATACCACGTAAGACCATGT
36772344 CAAGACATGG
66 CAAGACATGG
36772354 AAATGGTAAG
Statistics
Matches: 175, Mismatches: 7, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
108 140 0.80
109 33 0.19
110 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.21
Consensus pattern (108 bp):
GTAAGACCATGCCAATGCATGGCAATGGTGAGTTCATAAAGCAAGGATACCACGTAAGACCATGT
CAAGACATGGCATTGATAAACTACAATAAGGTAAAGATCCCAT
Found at i:36786109 original size:16 final size:16
Alignment explanation
Indices: 36786090--36786123 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
36786080 TAGAGATTTT
36786090 ATGGCTCAAACACGGG
1 ATGGCTCAAACACGGG
36786106 ATGGCTCAAACACGGG
1 ATGGCTCAAACACGGG
36786122 AT
1 AT
36786124 AGAAGAAGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.29, T:0.15
Consensus pattern (16 bp):
ATGGCTCAAACACGGG
Found at i:36787840 original size:40 final size:40
Alignment explanation
Indices: 36787785--36788122 Score: 617
Period size: 40 Copynumber: 8.5 Consensus size: 40
36787775 CGGATGATAA
* *
36787785 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
36787825 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
36787865 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
36787905 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
36787945 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
36787985 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
36788025 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36788065 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
36788105 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36788123 TACTTGGTTT
Statistics
Matches: 293, Mismatches: 4, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
39 17 0.06
40 276 0.94
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:36796021 original size:40 final size:40
Alignment explanation
Indices: 36795966--36796223 Score: 423
Period size: 40 Copynumber: 6.5 Consensus size: 40
36795956 CGGATGATAA
* *
36795966 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
36796006 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
36796046 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
36796086 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36796126 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36796166 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
36796206 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36796224 TACTTGGTTT
Statistics
Matches: 210, Mismatches: 6, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
39 16 0.08
40 193 0.92
41 1 0.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:36799378 original size:47 final size:47
Alignment explanation
Indices: 36799309--36799531 Score: 242
Period size: 47 Copynumber: 4.8 Consensus size: 47
36799299 GGTATGGTGC
36799309 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGT
* * * *
36799356 CGATGCCATGTCCTAGACATGGTCTTACACTGACT-ATCATCTCGTAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTC-AAGT
* * * * * *
36799404 CAATG-CATGTTCCAGACAT-GTCTTACACTAGCTTACATCACAAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA-GT
* *
36799450 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCAA-T
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGT
*
36799494 GCTGATGCCATGTCCCAGGCATGGTCTTACACTGGCTC
1 -C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTC
36799532 TCATAATGTG
Statistics
Matches: 148, Mismatches: 20, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
45 2 0.01
46 61 0.41
47 65 0.44
48 20 0.14
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGT
Found at i:36799504 original size:140 final size:141
Alignment explanation
Indices: 36799307--36799575 Score: 386
Period size: 140 Copynumber: 1.9 Consensus size: 141
36799297 TGGGTATGGT
* *
36799307 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCTAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGTCGATGCCATGTCCCAG
* * *
36799372 ACATGGTCTTACACTGACTATCAT-CTCGTAGG-CAATGCATGTTCCAGACATGTCTTACACTAG
66 ACATGGTCTTACACTGACTATCATAAT-GT-GGCCAATGCATGTCCCAAACATGTCTTACACTAG
36799435 CTTACATCACAAG
129 CTTACATCACAAG
*
36799448 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCAA-TGCTGATGCCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGT-C-GATGCCATGTCCC
* * *
36799510 AGGCATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCATGTCCCAAACATGTCTTACACTAG
64 AGACATGGTCTTACACTGACTATCATAATGTGGCCAATGCATGTCCCAAACATGTCTTACACTAG
36799575 C
129 C
36799576 CAACAATAAC
Statistics
Matches: 115, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
138 1 0.01
139 25 0.22
140 81 0.70
141 8 0.07
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGTCGATGCCATGTCCCAG
ACATGGTCTTACACTGACTATCATAATGTGGCCAATGCATGTCCCAAACATGTCTTACACTAGCT
TACATCACAAG
Found at i:36799554 original size:94 final size:93
Alignment explanation
Indices: 36799309--36799575 Score: 276
Period size: 94 Copynumber: 2.8 Consensus size: 93
36799299 GGTATGGTGC
* * * *
36799309 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA-GTCGATGCCATGTCCTAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT-AAGGCCGATG-CATGTCCCAGA
*
36799373 CATGGTCTTACACT-GACTATCATCTCGTAGG
64 CAT-GTCTTACACTAG-CTATCATCTCGAAGG
* * * *
36799404 CAATG-CATGTTCCAGACAT-GTCTTACACTAGCT-TACATCACAAGGCCGATGCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CAT-ATAAGGCCGATGCATGTCCCAGA
* *
36799466 CATGTCTTACACTAGCTCTCATCTC-AATG
64 CATGTCTTACACTAGCTATCATCTCGAAGG
* ** * *
36799495 CTGATGCCATGTCCCAGGCATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCATGTCCCAAA
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATAAGGCCGATGCATGTCCCAGA
36799560 CATGTCTTACACTAGC
64 CATGTCTTACACTAGC
36799576 CAACAATAAC
Statistics
Matches: 143, Mismatches: 21, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
91 3 0.02
92 22 0.15
93 44 0.31
94 69 0.48
95 5 0.03
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (93 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATAAGGCCGATGCATGTCCCAGACA
TGTCTTACACTAGCTATCATCTCGAAGG
Found at i:36799947 original size:30 final size:30
Alignment explanation
Indices: 36799912--36799968 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
36799902 AAATTCACAT
* * *
36799912 CTTTGGTAAAATGATCATTTTGCCCCTGAA
1 CTTTGGCAAAATGACCATTTTACCCCTGAA
36799942 CTTTGGCAAAATGACCATTTTACCCCT
1 CTTTGGCAAAATGACCATTTTACCCCT
36799969 ATGCTCAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTGAA
Found at i:36807382 original size:45 final size:45
Alignment explanation
Indices: 36807329--36807416 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
36807319 GAAATATTAA
36807329 AGTTTAAGCCATATTCGCATGGCCATGATTACAAAAATAAATAAT
1 AGTTTAAGCCATATTCGCATGGCCATGATTACAAAAATAAATAAT
*
36807374 AGTTTAAGCCATATTCGCTTGGCCATGATTACAAAAATAAATA
1 AGTTTAAGCCATATTCGCATGGCCATGATTACAAAAATAAATA
36807417 TTATGGCATG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.30
Consensus pattern (45 bp):
AGTTTAAGCCATATTCGCATGGCCATGATTACAAAAATAAATAAT
Found at i:36808074 original size:24 final size:24
Alignment explanation
Indices: 36808040--36808220 Score: 247
Period size: 24 Copynumber: 7.5 Consensus size: 24
36808030 AAGGAAATTT
* * *
36808040 GCACACATAGTGCCATGCTAACCC
1 GCACACATAGTGCCATTCAAATCC
* *
36808064 GTACACATAGTGCC-TTGCTAATCC
1 GCACACATAGTGCCATT-CAAATCC
* * *
36808088 ACACACGTAGTGCCATTCAAATTC
1 GCACACATAGTGCCATTCAAATCC
*
36808112 GCACACATAGTGCCATACAAATCC
1 GCACACATAGTGCCATTCAAATCC
36808136 GCACACATAGTGCCATTCAAATCC
1 GCACACATAGTGCCATTCAAATCC
36808160 GCACACATAGTGCCATTCAAATCC
1 GCACACATAGTGCCATTCAAATCC
*
36808184 ACACACATAGTGCCATTCAAATCC
1 GCACACATAGTGCCATTCAAATCC
*
36808208 GCACATATAGTGC
1 GCACACATAGTGC
36808221 GAATGTCATT
Statistics
Matches: 139, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
23 1 0.01
24 136 0.98
25 2 0.01
ACGTcount: A:0.33, C:0.32, G:0.14, T:0.22
Consensus pattern (24 bp):
GCACACATAGTGCCATTCAAATCC
Found at i:36810115 original size:49 final size:49
Alignment explanation
Indices: 36809949--36810173 Score: 306
Period size: 49 Copynumber: 4.5 Consensus size: 49
36809939 TGAGGTCGCA
* * ** * *
36809949 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACG
* * **
36810000 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
36810050 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* *
36810099 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
36810148 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
36810174 TGCATACCAG
Statistics
Matches: 157, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
49 80 0.51
50 45 0.29
51 32 0.20
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:36810129 original size:99 final size:100
Alignment explanation
Indices: 36809942--36810173 Score: 315
Period size: 99 Copynumber: 2.3 Consensus size: 100
36809932 TCTATTGTGA
* *
36809942 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAAACTGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAAAAACTGTGATCACGTGTGTAG
* **
36810007 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * ** * *
36810042 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACGTGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAAAAACTGTGATCACGTGTGTA
*
36810105 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
36810141 GGTCGCATGTGTAGTACTATGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
36810174 TGCATACCAG
Statistics
Matches: 116, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
98 30 0.26
99 45 0.39
100 1 0.01
101 40 0.34
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAAAAACTGTGATCACGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:36812654 original size:17 final size:17
Alignment explanation
Indices: 36812632--36812665 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
36812622 CCCCACTTAA
*
36812632 TATATTATAACTTATTT
1 TATATTATAACATATTT
36812649 TATATTATAACATATTT
1 TATATTATAACATATTT
36812666 CAAATATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (17 bp):
TATATTATAACATATTT
Found at i:36818971 original size:24 final size:24
Alignment explanation
Indices: 36818944--36819126 Score: 278
Period size: 24 Copynumber: 7.6 Consensus size: 24
36818934 AAGGAAATTT
* * * *
36818944 GCACACATAGTACCATGCTAACCC
1 GCACACATAGTGCCATTCAAATCC
* *
36818968 GCACAGATAGTGCC-TTGCTAATCC
1 GCACACATAGTGCCATT-CAAATCC
* *
36818992 ACACACGTAGTGCCATTCAAATCC
1 GCACACATAGTGCCATTCAAATCC
36819016 GCACACATAGTGCCATTCAAATCC
1 GCACACATAGTGCCATTCAAATCC
36819040 GCACACATAGTGCCATTCAAATCC
1 GCACACATAGTGCCATTCAAATCC
36819064 GCACACATAGTGCCATTCAAATCC
1 GCACACATAGTGCCATTCAAATCC
36819088 GCACACATAGTGCCATTCAAATCC
1 GCACACATAGTGCCATTCAAATCC
36819112 GCACACATAGTGCCA
1 GCACACATAGTGCCA
36819127 ATGTCATTTC
Statistics
Matches: 147, Mismatches: 10, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
23 1 0.01
24 144 0.98
25 2 0.01
ACGTcount: A:0.32, C:0.33, G:0.14, T:0.20
Consensus pattern (24 bp):
GCACACATAGTGCCATTCAAATCC
Found at i:36820472 original size:17 final size:17
Alignment explanation
Indices: 36820450--36820483 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
36820440 CCTCACTTAA
*
36820450 TATATTATAACTTATTT
1 TATATTATAACATATTT
36820467 TATATTATAACATATTT
1 TATATTATAACATATTT
36820484 CAAATATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (17 bp):
TATATTATAACATATTT
Found at i:36821017 original size:46 final size:45
Alignment explanation
Indices: 36820833--36821041 Score: 168
Period size: 46 Copynumber: 4.5 Consensus size: 45
36820823 ACACTAATGC
* * * * *
36820833 CATGTCCTAGACATGGTCTTACACTGGCTCACATCTCAAGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATTTGAAGCCGATG
* * * * *
36820879 CCATGTCCTAGACATGGTCTTACACTGACTATCATTTGTAGCCAATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCATTTGAAGCCGATG
* * * * *
36820926 CATGTTCCAGACAAGTCTTACACTAGCT-TACTTCTTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CAT-TTGAAGCCGATG
* ** *
36820972 CATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGGTCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCAT-TTGAAGCCGATG
* *
36821018 CATGTCCCCGACATATCTTACACT
1 CATGTCCCAGACATGTCTTACACT
36821042 AGCCAACAAT
Statistics
Matches: 132, Mismatches: 27, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
44 1 0.01
45 14 0.11
46 78 0.59
47 39 0.30
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATTTGAAGCCGATG
Found at i:36821019 original size:92 final size:93
Alignment explanation
Indices: 36820874--36821044 Score: 222
Period size: 92 Copynumber: 1.8 Consensus size: 93
36820864 CATCTCAAGT
* * *
36820874 CGATGCCATGTCCTAGACATGGTCTTACACTGACTATCATTTGTAGCCAATGCATGTTCCAGACA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATATGTAGCCAATGCATGTCCCAGACA
36820939 -AGTCTTACACTAGCTTACTTCTTGAGGC
66 TA-TCTTACACTAGCTTACTTCTTGAGGC
* * * * * *
36820967 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGTGGTCGATGCATGTCCCCGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAT-ATGTAGCCAATGCATGTCCCAGAC
36821030 ATATCTTACACTAGC
65 ATATCTTACACTAGC
36821045 CAACAATAAC
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
91 17 0.25
92 44 0.66
93 6 0.09
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (93 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATATGTAGCCAATGCATGTCCCAGACA
TATCTTACACTAGCTTACTTCTTGAGGC
Found at i:36829780 original size:15 final size:15
Alignment explanation
Indices: 36829760--36829789 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
36829750 ATGTTTAGAC
36829760 TTAAATGATATTTAT
1 TTAAATGATATTTAT
*
36829775 TTAAATGATGTTTAT
1 TTAAATGATATTTAT
36829790 GAAAATGTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (15 bp):
TTAAATGATATTTAT
Found at i:36837171 original size:49 final size:48
Alignment explanation
Indices: 36837111--36837245 Score: 155
Period size: 48 Copynumber: 2.8 Consensus size: 48
36837101 CGGCAGATGA
* *
36837111 GAGCCAGTGTAAGACCATGTTTGGGA-ATGGCATCGGCTTCGATATAT
1 GAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCTTCGATATAT
* * * * * *
36837158 AAGAGTCAATGTAAGACCATGTCTGGGACATGGCATTGACTTTGATGTGT
1 --GAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCTTCGATATAT
* *
36837208 GAGCCAGTGTAAGACCATGTCCGGGACATGGCATCGGC
1 GAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGC
36837246 ATCTTACCCT
Statistics
Matches: 72, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
48 33 0.46
49 23 0.32
50 16 0.22
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (48 bp):
GAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCTTCGATATAT
Found at i:36837228 original size:48 final size:48
Alignment explanation
Indices: 36837070--36837241 Score: 168
Period size: 49 Copynumber: 3.5 Consensus size: 48
36837060 AAAGTTAGTA
* ** *
36837070 TAAGACCATGTCTTGGACATGGCATTGACACCGGCA-GATGAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATTGACTTC-G-ATG-TGTGAGCCAGTG
* * * * * * *
36837120 TAAGACCATGTTTGGGA-ATGGCATCGGCTTCGATATATAAGAGTCAATG
1 TAAGACCATGTCTGGGACATGGCATTGACTTCGATGTGT--GAGCCAGTG
*
36837169 TAAGACCATGTCTGGGACATGGCATTGACTTTGATGTGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATTGACTTCGATGTGTGAGCCAGTG
*
36837217 TAAGACCATGTCCGGGACATGGCAT
1 TAAGACCATGTCTGGGACATGGCAT
36837242 CGGCATCTTA
Statistics
Matches: 98, Mismatches: 20, Indels: 10
0.77 0.16 0.08
Matches are distributed among these distances:
47 2 0.02
48 32 0.33
49 33 0.34
50 31 0.32
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATTGACTTCGATGTGTGAGCCAGTG
Found at i:36840959 original size:32 final size:33
Alignment explanation
Indices: 36840881--36840960 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 33
36840871 TGCATCTTGC
* *
36840881 ACTGTACTGCTACTGTATAAGGGCTTGGCCCAA
1 ACTGTACTGATACTGAATAAGGGCTTGGCCCAA
* * * *
36840914 ATTGCAC-GAATACTGAAT-AGGGCTTGGGCCAG
1 ACTGTACTG-ATACTGAATAAGGGCTTGGCCCAA
36840946 ACTGTACTGATACTG
1 ACTGTACTGATACTG
36840961 TGTTGTTCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 5
0.74 0.16 0.10
Matches are distributed among these distances:
32 24 0.65
33 13 0.35
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (33 bp):
ACTGTACTGATACTGAATAAGGGCTTGGCCCAA
Found at i:36860135 original size:49 final size:49
Alignment explanation
Indices: 36860074--36860305 Score: 268
Period size: 49 Copynumber: 4.7 Consensus size: 49
36860064 CTGGTACGCA
* * *
36860074 TAGTAGCATGCACTTAGTACTACACATGTGACCAATAATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACG
* ** *
36860123 TAGTAGCCTGCACTTAGCACTACACACGTGACCTAACCAT-CTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCAG-TACACG
* ** * * *
36860173 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATTGAGAACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCAGTACACG
* * *
36860224 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACG
*
36860273 TAGTAGCCTGCACTTAGTACTACACACATGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
36860306 TTACAATAGA
Statistics
Matches: 151, Mismatches: 27, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
49 70 0.46
50 45 0.30
51 35 0.23
52 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACG
Found at i:36862777 original size:27 final size:27
Alignment explanation
Indices: 36862736--36862789 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
36862726 TGTCATGTGA
* *
36862736 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
36862763 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
36862790 GGTTGTACCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:36863095 original size:49 final size:50
Alignment explanation
Indices: 36863015--36863247 Score: 263
Period size: 49 Copynumber: 4.7 Consensus size: 50
36863005 ATCTATTGTG
*
36863015 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * **
36863065 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACCATGTGTACCCAATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * *** **
36863115 CGATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATTAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
36863165 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
** *
36863215 -GGTTGCATGTGTAGTACTAAGTACAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
36863248 TACGTACCAG
Statistics
Matches: 149, Mismatches: 32, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
49 69 0.46
50 45 0.30
51 35 0.23
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:36863252 original size:101 final size:99
Alignment explanation
Indices: 36863018--36863247 Score: 266
Period size: 100 Copynumber: 2.3 Consensus size: 99
36863008 TATTGTGAGG
* *
36863018 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCAC-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
*
36863083 AAGTGCAGGCTACCATGTGTACCCAATAACTTCGA
65 AAGTGCAGGCTACCACGTGTACCCAATAACTTCGA
* ** ** *
36863118 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATTAGATGGTTAGGTCACGTGTGTAGTAC
1 TCAC-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* * ** * *
36863183 TAAGTGTAGGCTACTACGTGTACCGGATAA-TTGGT
64 TAAGTGCAGGCTACCACGTGTACCCAATAACTTCGA
*
36863218 TGCA-TGTGTAGTACTAAGTACAGGCTACTA
1 T-CACTGTGTAGTACTAAGTGCAGGCTACTA
36863248 TACGTACCAG
Statistics
Matches: 111, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
99 24 0.22
100 45 0.41
101 42 0.38
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (99 bp):
TCACTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTA
AGTGCAGGCTACCACGTGTACCCAATAACTTCGA
Found at i:36865239 original size:23 final size:23
Alignment explanation
Indices: 36865213--36865265 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
36865203 AAAGTGCCAT
*
36865213 ACTGTAATATAGCCGAAGCTATC
1 ACTGTAATATAGCCGAAGCTACC
*
36865236 ACTGTAATGTAGCCGAAGCTACC
1 ACTGTAATATAGCCGAAGCTACC
36865259 ACTGTAA
1 ACTGTAA
36865266 CACTTATTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.25
Consensus pattern (23 bp):
ACTGTAATATAGCCGAAGCTACC
Found at i:36865286 original size:15 final size:15
Alignment explanation
Indices: 36865266--36865305 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
36865256 ACCACTGTAA
*
36865266 CACTTATTCAACATT
1 CACTTAATCAACATT
36865281 CACTTAATCAACATT
1 CACTTAATCAACATT
36865296 CACTTAATCA
1 CACTTAATCA
36865306 CTTATCTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.35
Consensus pattern (15 bp):
CACTTAATCAACATT
Found at i:36869094 original size:90 final size:90
Alignment explanation
Indices: 36868941--36869120 Score: 360
Period size: 90 Copynumber: 2.0 Consensus size: 90
36868931 AGACTAAGTC
36868941 AAAACTTTTTATGCTAGTTGGCCACCTCCGAGTCCCTTCATCCGTCGAACCGCCTACTAAGGATC
1 AAAACTTTTTATGCTAGTTGGCCACCTCCGAGTCCCTTCATCCGTCGAACCGCCTACTAAGGATC
36869006 ACTTGAAAAGTTTAGAAGGAGGGGG
66 ACTTGAAAAGTTTAGAAGGAGGGGG
36869031 AAAACTTTTTATGCTAGTTGGCCACCTCCGAGTCCCTTCATCCGTCGAACCGCCTACTAAGGATC
1 AAAACTTTTTATGCTAGTTGGCCACCTCCGAGTCCCTTCATCCGTCGAACCGCCTACTAAGGATC
36869096 ACTTGAAAAGTTTAGAAGGAGGGGG
66 ACTTGAAAAGTTTAGAAGGAGGGGG
36869121 GTGAGTTTCG
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 90 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (90 bp):
AAAACTTTTTATGCTAGTTGGCCACCTCCGAGTCCCTTCATCCGTCGAACCGCCTACTAAGGATC
ACTTGAAAAGTTTAGAAGGAGGGGG
Found at i:36869997 original size:29 final size:29
Alignment explanation
Indices: 36869936--36870025 Score: 110
Period size: 29 Copynumber: 3.1 Consensus size: 29
36869926 CACATACCTG
* *
36869936 TATATGGCCCACTAGG-CCTAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
36869964 TATATGGCCCATTAGGCCCAAATCACTTT
1 TATATGGCCCATTAGGCCCAAATCACATT
* * * *
36869993 TATATAGTCCATCAGGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
36870022 TATA
1 TATA
36870026 GTCATGCTCA
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 15 0.28
29 38 0.72
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:36878003 original size:27 final size:27
Alignment explanation
Indices: 36877970--36878449 Score: 852
Period size: 27 Copynumber: 17.6 Consensus size: 27
36877960 TAAATTGTGC
*
36877970 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
36877997 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
36878024 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
36878051 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
36878078 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
36878105 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
36878132 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
36878160 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
36878187 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
36878214 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
36878242 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
36878270 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
36878298 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
36878326 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
36878353 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
36878380 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
36878408 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
36878435 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36878450 GACTTAATAT
Statistics
Matches: 444, Mismatches: 6, Indels: 6
0.97 0.01 0.01
Matches are distributed among these distances:
27 281 0.63
28 163 0.37
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:36878210 original size:82 final size:82
Alignment explanation
Indices: 36877970--36878449 Score: 874
Period size: 82 Copynumber: 5.9 Consensus size: 82
36877960 TAAATTGTGC
*
36877970 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
36878034 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
36878051 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
36878115 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
*
36878132 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
36878197 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
36878214 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAG
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAG
36878279 TGTGCGAGTTTGACTATGT
65 TGTGCGAG-TTGACTATGT
36878298 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
36878363 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
* * * *
36878380 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
36878445 GTGCG
66 GTGCG
36878450 GACTTAATAT
Statistics
Matches: 389, Mismatches: 6, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
81 97 0.25
82 183 0.47
83 54 0.14
84 55 0.14
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
GTGCGAGTTGACTATGT
Found at i:36885638 original size:72 final size:72
Alignment explanation
Indices: 36885516--36885670 Score: 229
Period size: 72 Copynumber: 2.2 Consensus size: 72
36885506 ACAGTCTAAA
* * * **
36885516 GGAAAGCCCTAGCGGCTATCATCTGAAGGGAACACCTTTGTGGCGGACCCTGAAGAAAGAAATGG
1 GGAAAGCCCTAGCAGCTATCATATGAAGAGAACACCTTTGTGGCAAACCCTGAAGAAAGAAATGG
36885581 TGAGTAT
66 TGAGTAT
* * *
36885588 GGAAAGCCCTTGTAGCTATCATATGAAGAGAACACCTTTGTGGCAAACCCTGAAGAAAGAAGTGG
1 GGAAAGCCCTAGCAGCTATCATATGAAGAGAACACCTTTGTGGCAAACCCTGAAGAAAGAAATGG
36885653 TGAGTAT
66 TGAGTAT
*
36885660 GGAAAACCCTA
1 GGAAAGCCCTA
36885671 AGAAGTAGTA
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
72 73 1.00
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.20
Consensus pattern (72 bp):
GGAAAGCCCTAGCAGCTATCATATGAAGAGAACACCTTTGTGGCAAACCCTGAAGAAAGAAATGG
TGAGTAT
Found at i:36889247 original size:40 final size:35
Alignment explanation
Indices: 36889168--36889237 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
36889158 AAAGTTGGTG
36889168 AAAGTTTCTTAAATTATCAGTTTAGTCCCAAACCA
1 AAAGTTTCTTAAATTATCAGTTTAGTCCCAAACCA
* * *
36889203 AAAGTTTCTTAAGTTATCGGTTTATTCCCAAACCA
1 AAAGTTTCTTAAATTATCAGTTTAGTCCCAAACCA
36889238 CTCCAAAAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (35 bp):
AAAGTTTCTTAAATTATCAGTTTAGTCCCAAACCA
Found at i:36914214 original size:38 final size:39
Alignment explanation
Indices: 36914164--36914258 Score: 129
Period size: 40 Copynumber: 2.4 Consensus size: 39
36914154 CCATCTCCAT
* * *
36914164 CCAACCCAACACACCATGTA-GGGATAAAATCGACCCAC
1 CCAACCCTACACACCAAGTAGGGGATAAAATCAACCCAC
* *
36914202 CCAGCCCTACACACCAAGTATGGGGATAAAATCAACCCAT
1 CCAACCCTACACACCAAGTA-GGGGATAAAATCAACCCAC
36914242 CCAACCCTACACACCAA
1 CCAACCCTACACACCAA
36914259 ATGGTACCGT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
38 17 0.35
40 32 0.65
ACGTcount: A:0.39, C:0.38, G:0.12, T:0.12
Consensus pattern (39 bp):
CCAACCCTACACACCAAGTAGGGGATAAAATCAACCCAC
Found at i:36923395 original size:6 final size:6
Alignment explanation
Indices: 36923384--36923474 Score: 107
Period size: 6 Copynumber: 15.3 Consensus size: 6
36923374 AATCCTCCTA
*
36923384 TTTTAT TTTTAT TTTTAT TTTTA- -TTTAT TCTTAT TTTTA- TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* * *
36923429 TTTATTT ATTTTAT TCTTAT TTTTAT TTTTAT TTTTAT TTTCAT TT
1 TTT-TAT -TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
36923475 CAATTTTCTT
Statistics
Matches: 73, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
4 4 0.05
5 5 0.07
6 57 0.78
7 4 0.05
8 3 0.04
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:36923707 original size:45 final size:45
Alignment explanation
Indices: 36923643--36923734 Score: 166
Period size: 45 Copynumber: 2.0 Consensus size: 45
36923633 TTTACGCAAT
*
36923643 GAGGAAACAAATAGGGAACAATACCTAACGAGTGCCATGTTCAAC
1 GAGGAAACAAATAGGGAACAATACCTAACAAGTGCCATGTTCAAC
*
36923688 GAGGAAACAAATAGGGAACAATACCTAACAAGTGTCATGTTCAAC
1 GAGGAAACAAATAGGGAACAATACCTAACAAGTGCCATGTTCAAC
36923733 GA
1 GA
36923735 CCCAATTTCT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.43, C:0.18, G:0.22, T:0.16
Consensus pattern (45 bp):
GAGGAAACAAATAGGGAACAATACCTAACAAGTGCCATGTTCAAC
Found at i:36926425 original size:13 final size:13
Alignment explanation
Indices: 36926409--36926441 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
36926399 TTTAATTAAA
*
36926409 TTAGTTAATTAGT
1 TTAGATAATTAGT
36926422 TTAGATAATTAGT
1 TTAGATAATTAGT
36926435 TTA-ATAA
1 TTAGATAA
36926442 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:36931141 original size:47 final size:47
Alignment explanation
Indices: 36931062--36931243 Score: 184
Period size: 47 Copynumber: 3.8 Consensus size: 47
36931052 TATAGAATAA
* * * *
36931062 GAAGCCGACGCCATGTCTCAGACATGGTCTTACACTGGCTAGCACATC
1 GAAGTCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTATCACATC
* * * * * *
36931110 AAAGTCGATGCCATGTCCCAGATAGGTCTTACACTGACTTTTATATC
1 GAAGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCACATC
* * * *
36931157 GAGGTCGATGCCATGTCCCTGACAGGTCTTACACTAGCTCTCATCTATC
1 GAAGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCA-C-ATC
** *
36931206 GGTGTCGATGCCATGTCCCAGACAAGTCTTACACTGGC
1 GAAGTCGATGCCATGTCCCAGACAGGTCTTACACTGGC
36931244 ACACAACAAG
Statistics
Matches: 108, Mismatches: 24, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
47 53 0.49
48 19 0.18
49 36 0.33
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (47 bp):
GAAGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCACATC
Found at i:36931881 original size:30 final size:31
Alignment explanation
Indices: 36931845--36931907 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
36931835 TTCTATAATT
*
36931845 TATACTTTGGC-AAAATGACCATTTTACCCC
1 TATACTTTGACAAAAATGACCATTTTACCCC
* * *
36931875 TATACTTTTACAAAAATTACGATTTTACCCC
1 TATACTTTGACAAAAATGACCATTTTACCCC
36931906 TA
1 TA
36931908 AGCTTGTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 9 0.32
31 19 0.68
ACGTcount: A:0.33, C:0.24, G:0.06, T:0.37
Consensus pattern (31 bp):
TATACTTTGACAAAAATGACCATTTTACCCC
Found at i:36939578 original size:24 final size:27
Alignment explanation
Indices: 36939531--36939584 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 27
36939521 TTCTCCTAAA
* *
36939531 TTTCAAATTTATTTAATTATTTAAT-T
1 TTTCAAATTCATTGAATTATTTAATAT
36939557 TTTC-AATTCATTGAATTA-TTAATAT
1 TTTCAAATTCATTGAATTATTTAATAT
36939582 TTT
1 TTT
36939585 ATACAAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.20
25 16 0.64
26 4 0.16
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (27 bp):
TTTCAAATTCATTGAATTATTTAATAT
Found at i:36941891 original size:38 final size:38
Alignment explanation
Indices: 36941849--36941925 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
36941839 ATGATTTTTC
36941849 AGTCATTATCTAACTAAATTGTGTTTGATTGACTTGTA
1 AGTCATTATCTAACTAAATTGTGTTTGATTGACTTGTA
*
36941887 AGTCATTATTTAACTAAATTGTGTTTGATTGACTTGTA
1 AGTCATTATCTAACTAAATTGTGTTTGATTGACTTGTA
36941925 A
1 A
36941926 CACTAACTCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.45
Consensus pattern (38 bp):
AGTCATTATCTAACTAAATTGTGTTTGATTGACTTGTA
Found at i:36951567 original size:25 final size:25
Alignment explanation
Indices: 36951520--36951567 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
36951510 ATGTGACTCT
*
36951520 GTATGTTGCCTTTGGGGCATATTTC
1 GTATGTTGCCTTTAGGGCATATTTC
* * *
36951545 GTATGTTTCCTTTATGGCGTATT
1 GTATGTTGCCTTTAGGGCATATT
36951568 CTATTTAGCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.12, C:0.15, G:0.25, T:0.48
Consensus pattern (25 bp):
GTATGTTGCCTTTAGGGCATATTTC
Found at i:36965348 original size:39 final size:39
Alignment explanation
Indices: 36965294--36965371 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
36965284 GCTTCTCTAT
36965294 TGCCTCATAACCCTTGCGAACCAGTTTCTCGGCCCTTAA
1 TGCCTCATAACCCTTGCGAACCAGTTTCTCGGCCCTTAA
36965333 TGCCTCATAACCCTTGCGAACCAGTTTCTCGGCCCTTAA
1 TGCCTCATAACCCTTGCGAACCAGTTTCTCGGCCCTTAA
36965372 CGTTGAAATC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.21, C:0.36, G:0.15, T:0.28
Consensus pattern (39 bp):
TGCCTCATAACCCTTGCGAACCAGTTTCTCGGCCCTTAA
Found at i:36971526 original size:29 final size:29
Alignment explanation
Indices: 36971492--36971565 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
36971482 TCATCAACCA
*
36971492 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
36971521 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
36971550 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
36971566 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:36977511 original size:28 final size:28
Alignment explanation
Indices: 36977451--36977517 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
36977441 TGATATTTTG
*
36977451 CACACTAAGTGTCATTCTCAATATCTCG
1 CACACTAAGTGTCATTCTCAATATCTCA
*
36977479 CACACTAAGTGTCATTCTCAATATTTCA
1 CACACTAAGTGTCATTCTCAATATCTCA
* *
36977507 TACACTGAGTG
1 CACACTAAGTG
36977518 CCATATTTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (28 bp):
CACACTAAGTGTCATTCTCAATATCTCA
Found at i:36981513 original size:13 final size:13
Alignment explanation
Indices: 36981495--36981520 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36981485 AATGTCACAT
36981495 GCATATTCATATA
1 GCATATTCATATA
36981508 GCATATTCATATA
1 GCATATTCATATA
36981521 TAGTCAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
GCATATTCATATA
Found at i:36985986 original size:19 final size:18
Alignment explanation
Indices: 36985961--36986004 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
36985951 ACTCAATCCA
*
36985961 CCATTTCATATTTCATATT
1 CCATTTCACATTTCAT-TT
*
36985980 TCATTTCACATTTCATTT
1 CCATTTCACATTTCATTT
36985998 CCATTTC
1 CCATTTC
36986005 TCATGATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.23, C:0.25, G:0.00, T:0.52
Consensus pattern (18 bp):
CCATTTCACATTTCATTT
Found at i:36985987 original size:12 final size:12
Alignment explanation
Indices: 36985970--36986004 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
36985960 ACCATTTCAT
*
36985970 ATTTCATATTTC
1 ATTTCACATTTC
36985982 ATTTCACATTTC
1 ATTTCACATTTC
36985994 ATTTC-CATTTC
1 ATTTCACATTTC
36986005 TCATGATTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 6 0.27
12 16 0.73
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (12 bp):
ATTTCACATTTC
Found at i:36987458 original size:46 final size:46
Alignment explanation
Indices: 36987408--36987583 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
36987398 TGGTTGAGCA
36987408 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
36987454 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
36987499 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
36987547 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36987584 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:36987564 original size:93 final size:93
Alignment explanation
Indices: 36987405--36987576 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
36987395 GGATGGTTGA
* *
36987405 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
36987470 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
36987498 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
36987563 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
36987577 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:36991455 original size:34 final size:34
Alignment explanation
Indices: 36991412--36991479 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
36991402 GCATGCTGAG
*
36991412 CATTTGAGGATAGTTTTGCAAACTTTGAGAGATA
1 CATTTGAGGATAGTTTTACAAACTTTGAGAGATA
36991446 CATTTGAGGATAGTTTTACAAACTTTGAGAGATA
1 CATTTGAGGATAGTTTTACAAACTTTGAGAGATA
36991480 AGCAGCTGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.35
Consensus pattern (34 bp):
CATTTGAGGATAGTTTTACAAACTTTGAGAGATA
Found at i:36997896 original size:265 final size:265
Alignment explanation
Indices: 36997423--36997951 Score: 1031
Period size: 265 Copynumber: 2.0 Consensus size: 265
36997413 GGCCATACCT
36997423 GGATAGATTTGTTGTGGTGTTTATAGATGATATTTTAATTTATTCAAAAGATGAGACAGAGCATG
1 GGATAGATTTGTTGTGGTGTTTATAGATGATATTTTAATTTATTCAAAAGATGAGACAGAGCATG
36997488 CTGAGAATTTGAGGATAGTTTTGCAAACTTTGAGAGATAAGCAGCTGTATGCTAAGTTTAGTAAA
66 CTGAGAATTTGAGGATAGTTTTGCAAACTTTGAGAGATAAGCAGCTGTATGCTAAGTTTAGTAAA
36997553 AGTGAATTTTGGCTCCGAGAAGTTGGATTTTTGGGTCATATTGTTTCAGGTGATGGTATACGGGT
131 AGTGAATTTTGGCTCCGAGAAGTTGGATTTTTGGGTCATATTGTTTCAGGTGATGGTATACGGGT
*
36997618 TGATCCTAGTAAAATTTCAGCCATTGTTGATTGGAAACCACCGAAAAACGTAACTGAAGTTAGAA
196 TGATCCTAGTAAAATTTCAGCCATTGTTGATTGGAAACCACCAAAAAACGTAACTGAAGTTAGAA
36997683 GTTTA
261 GTTTA
36997688 GGATAGATTTGTTGTGGTGTTTATAGATGATATTTTAATTTATTCAAAAGATGAGACAGAGCATG
1 GGATAGATTTGTTGTGGTGTTTATAGATGATATTTTAATTTATTCAAAAGATGAGACAGAGCATG
36997753 CTGAGAATTTGAGGATAGTTTTGCAAACTTTGAGAGATAAGCAGCTGTATGCTAAGTTTAGTAAA
66 CTGAGAATTTGAGGATAGTTTTGCAAACTTTGAGAGATAAGCAGCTGTATGCTAAGTTTAGTAAA
36997818 AGTGAATTTTGGCTCCGAGAAGTTGGATTTTTGGGTCATATTGTTTCAGGTGATGGTATACGGGT
131 AGTGAATTTTGGCTCCGAGAAGTTGGATTTTTGGGTCATATTGTTTCAGGTGATGGTATACGGGT
* *
36997883 TGATCCTAGTAAAATTTCAGCCATTGTTGATTGGAAACCACCAAAAAATGTAACTGAAGTTAGGA
196 TGATCCTAGTAAAATTTCAGCCATTGTTGATTGGAAACCACCAAAAAACGTAACTGAAGTTAGAA
36997948 GTTT
261 GTTT
36997952 CTTAGGGCTA
Statistics
Matches: 261, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
265 261 1.00
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.35
Consensus pattern (265 bp):
GGATAGATTTGTTGTGGTGTTTATAGATGATATTTTAATTTATTCAAAAGATGAGACAGAGCATG
CTGAGAATTTGAGGATAGTTTTGCAAACTTTGAGAGATAAGCAGCTGTATGCTAAGTTTAGTAAA
AGTGAATTTTGGCTCCGAGAAGTTGGATTTTTGGGTCATATTGTTTCAGGTGATGGTATACGGGT
TGATCCTAGTAAAATTTCAGCCATTGTTGATTGGAAACCACCAAAAAACGTAACTGAAGTTAGAA
GTTTA
Found at i:37002563 original size:26 final size:26
Alignment explanation
Indices: 37002534--37002642 Score: 209
Period size: 26 Copynumber: 4.2 Consensus size: 26
37002524 TGGTACAAAT
37002534 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
37002560 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
37002586 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
37002612 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
37002638 TGATA
1 TGATA
37002643 GGAATTTCAT
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:37016500 original size:16 final size:17
Alignment explanation
Indices: 37016469--37016504 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
37016459 TTGAGGGTCA
37016469 AATTTATTTAAAATTTT
1 AATTTATTTAAAATTTT
* *
37016486 AATTTTTTTAAATTTTT
1 AATTTATTTAAAATTTT
37016503 AA
1 AA
37016505 AATTAAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
AATTTATTTAAAATTTT
Found at i:37016907 original size:19 final size:20
Alignment explanation
Indices: 37016883--37016921 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
37016873 ACCATTTTCT
37016883 GTTAAAAA-GAAAAAAAATA
1 GTTAAAAACGAAAAAAAATA
*
37016902 GTTAAAAACGGAAAAAAATA
1 GTTAAAAACGAAAAAAAATA
37016922 AAAAGTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.69, C:0.03, G:0.13, T:0.15
Consensus pattern (20 bp):
GTTAAAAACGAAAAAAAATA
Found at i:37017623 original size:151 final size:152
Alignment explanation
Indices: 37017447--37017768 Score: 540
Period size: 152 Copynumber: 2.1 Consensus size: 152
37017437 ATTTTTAAAG
* * * *
37017447 TTTTAAAATTTTCGAATTTTATTTTTTAAAATATATTATTTTCGTATTTTATT-TTTTTATATTA
1 TTTTAAAATTTTCGAATCTTATTTTTTAAAATATACTATTTTCCTATTCTATTCTTTTTATATTA
* *
37017511 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAATAACCTT
66 TTTTAATACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAATAACCCT
*
37017576 AATTTTGTTCC-TTTGTTTGTAT
131 AATTTTG-TCCGTTTATTTGTAT
*
37017598 TTTTAAAATTTTCGGATCTTATTTTTTAAAATATACTATTTTCCTATTCTATTCTTTTTATATTA
1 TTTTAAAATTTTCGAATCTTATTTTTTAAAATATACTATTTTCCTATTCTATTCTTTTTATATTA
37017663 TTTTAATACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAATAACCCT
66 TTTTAATACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAATAACCCT
37017728 AATTTTGTCCGTTTATTTGTAT
131 AATTTTGTCCGTTTATTTGTAT
*
37017750 TTTCAAAATTTTCGAATCT
1 TTTTAAAATTTTCGAATCT
37017769 AAATTTTATA
Statistics
Matches: 159, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
151 51 0.32
152 108 0.68
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.57
Consensus pattern (152 bp):
TTTTAAAATTTTCGAATCTTATTTTTTAAAATATACTATTTTCCTATTCTATTCTTTTTATATTA
TTTTAATACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAATAACCCT
AATTTTGTCCGTTTATTTGTAT
Found at i:37017890 original size:20 final size:19
Alignment explanation
Indices: 37017865--37017903 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
37017855 TTTTGTTTTT
37017865 TATTTTTTTCCGTTTTTAAC
1 TATTTTTTTCC-TTTTTAAC
37017885 TATTTTTTTCCTTTTTAAC
1 TATTTTTTTCCTTTTTAAC
37017904 AAAAAATTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.15, C:0.15, G:0.03, T:0.67
Consensus pattern (19 bp):
TATTTTTTTCCTTTTTAAC
Found at i:37022012 original size:2 final size:2
Alignment explanation
Indices: 37022005--37022041 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
37021995 TAGGGTTTGT
37022005 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
37022042 GCTGCCAATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:37024090 original size:12 final size:12
Alignment explanation
Indices: 37024062--37024100 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
37024052 TCGGAAATAG
37024062 TTGTGTTTGTTTGT
1 TTGT-TTTGTTT-T
37024076 TTGTTTTGTTTT
1 TTGTTTTGTTTT
37024088 TTGTTTT-TTTT
1 TTGTTTTGTTTT
37024099 TT
1 TT
37024101 TAATGTTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 6 0.24
12 8 0.32
13 7 0.28
14 4 0.16
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (12 bp):
TTGTTTTGTTTT
Found at i:37026292 original size:150 final size:150
Alignment explanation
Indices: 37026094--37026386 Score: 586
Period size: 150 Copynumber: 2.0 Consensus size: 150
37026084 TGTCCAATAA
37026094 TCTTAAGACAGATCCTTTATTATTTTTTTCTCTAATCTGAGACGAACGAGACACCAAGGTGAAAG
1 TCTTAAGACAGATCCTTTATTATTTTTTTCTCTAATCTGAGACGAACGAGACACCAAGGTGAAAG
37026159 AAAAAAAAAGTTTTTTATTTGAAAATAAAAAAATTAAAATTAAATAAAATCTGTTTCAGGAATTT
66 AAAAAAAAAGTTTTTTATTTGAAAATAAAAAAATTAAAATTAAATAAAATCTGTTTCAGGAATTT
37026224 ATTCATGCCGTTCAACAGAT
131 ATTCATGCCGTTCAACAGAT
37026244 TCTTAAGACAGATCCTTTATTATTTTTTTCTCTAATCTGAGACGAACGAGACACCAAGGTGAAAG
1 TCTTAAGACAGATCCTTTATTATTTTTTTCTCTAATCTGAGACGAACGAGACACCAAGGTGAAAG
37026309 AAAAAAAAAGTTTTTTATTTGAAAATAAAAAAATTAAAATTAAATAAAATCTGTTTCAGGAATTT
66 AAAAAAAAAGTTTTTTATTTGAAAATAAAAAAATTAAAATTAAATAAAATCTGTTTCAGGAATTT
37026374 ATTCATGCCGTTC
131 ATTCATGCCGTTC
37026387 CAGATTTTAT
Statistics
Matches: 143, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
150 143 1.00
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.34
Consensus pattern (150 bp):
TCTTAAGACAGATCCTTTATTATTTTTTTCTCTAATCTGAGACGAACGAGACACCAAGGTGAAAG
AAAAAAAAAGTTTTTTATTTGAAAATAAAAAAATTAAAATTAAATAAAATCTGTTTCAGGAATTT
ATTCATGCCGTTCAACAGAT
Found at i:37026486 original size:90 final size:89
Alignment explanation
Indices: 37026339--37026582 Score: 239
Period size: 88 Copynumber: 2.8 Consensus size: 89
37026329 GAAAATAAAA
* * * * *** *
37026339 AAATT-AAAATTAAATAAAATCTGTTTCAGGAATTTATTCATGCCGTTC--CAGATTTTATTCAA
1 AAATTAAAAATTAAAAAAAATATATTTC-GGGATTTATTCCCACCGTTCAACAAATTTTATTC-A
*
37026401 TTTTTTTTATTTTGTTTCCAAACGAG
64 TTTTTTTTATTTTGTTGCCAAACGAG
* * *
37026427 -TATT-AAAATTAAAAAATATATATATTTCGGGATTTATTCCCGCTGTTCAACAAATTTTATTC-
1 AAATTAAAAATTAAAAAA-A-ATATATTTCGGGATTTATTCCCACCGTTCAACAAATTTTATTCA
*
37026489 TATTTTTTATTTTGTTGCCAAACGAG
64 TTTTTTTTATTTTGTTGCCAAACGAG
* * * * *
37026515 AAATTAAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCACCGTTTAACTAATTTTATTCCAT
1 AAATTAAAAATTAAAAAAAATATATTTCGGGATTTATTCCCACCGTTCAACAAATTTTATT-CAT
37026580 TTT
65 TTT
37026583 AATTTAGTTT
Statistics
Matches: 128, Mismatches: 20, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
87 14 0.11
88 77 0.60
89 12 0.09
90 25 0.20
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.44
Consensus pattern (89 bp):
AAATTAAAAATTAAAAAAAATATATTTCGGGATTTATTCCCACCGTTCAACAAATTTTATTCATT
TTTTTTATTTTGTTGCCAAACGAG
Found at i:37026643 original size:84 final size:84
Alignment explanation
Indices: 37026547--37026708 Score: 272
Period size: 84 Copynumber: 1.9 Consensus size: 84
37026537 TGTTTCGGGA
* * *
37026547 TTTATTCCCACCGTTTAACTA-ATTTTATTCCATTTTAATTTAGTTTCTAAAATAGATTTAAATT
1 TTTATTCCCACCGTCTAAC-AGATTTTATTCAATTTTAATTTAGTTTCTAAAATAGAATTAAATT
37026611 GAATAATTTTGTTTTGGGGG
65 GAATAATTTTGTTTTGGGGG
*
37026631 TTTATTCCCACCGTCTAACAGATTTTATTCAATTTTAATTTTGTTTCTAAAATAGAATTAAATTG
1 TTTATTCCCACCGTCTAACAGATTTTATTCAATTTTAATTTAGTTTCTAAAATAGAATTAAATTG
37026696 AATAATTTTGTTT
66 AATAATTTTGTTT
37026709 CAGGATTTAT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
83 1 0.01
84 72 0.99
ACGTcount: A:0.30, C:0.11, G:0.10, T:0.49
Consensus pattern (84 bp):
TTTATTCCCACCGTCTAACAGATTTTATTCAATTTTAATTTAGTTTCTAAAATAGAATTAAATTG
AATAATTTTGTTTTGGGGG
Found at i:37026879 original size:77 final size:78
Alignment explanation
Indices: 37026744--37026917 Score: 183
Period size: 77 Copynumber: 2.2 Consensus size: 78
37026734 GATTTTCTTC
* * * *
37026744 GATTTCGATTTTGCTTCCAAACGAGAAGACTTAATCAAATAATTCTGTTTTGAAATTTAATCCTG
1 GATTTTGATTTTGTTTCCAAAC--GAAGACTTAATCAAATAATTCTATTTCGAAATTTAATCCTG
*
37026809 -CTGCTT-AACAGATTT
64 TC-G-TTCAACAGACTT
* * * * * *
37026824 TATTTTGATTTTGTTTCCAAAC-AAGATTTAATTAAATAATTTTATTTCGAGATTTAATCTTGTC
1 GATTTTGATTTTGTTTCCAAACGAAGACTTAATCAAATAATTCTATTTCGAAATTTAATCCTGTC
37026888 GTTCAACAGACTT
66 GTTCAACAGACTT
*
37026901 GATCTTGATTTTGTTTC
1 GATTTTGATTTTGTTTC
37026918 AGAAATTTAA
Statistics
Matches: 79, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
76 2 0.03
77 57 0.72
78 1 0.01
80 19 0.24
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.44
Consensus pattern (78 bp):
GATTTTGATTTTGTTTCCAAACGAAGACTTAATCAAATAATTCTATTTCGAAATTTAATCCTGTC
GTTCAACAGACTT
Found at i:37027411 original size:40 final size:40
Alignment explanation
Indices: 37027353--37027442 Score: 137
Period size: 40 Copynumber: 2.2 Consensus size: 40
37027343 CGAAAAACTC
* *
37027353 CAAGCATTAGCGGTGC-TTTCCTGAAAACGCCGCTAAATAT
1 CAAGCATTAGCGGCGCTTTTCC-GAAAACGCCGCTAAAGAT
*
37027393 CAAGCATTAGCTGCGCTTTTCCGAAAACGCCGCTAAAGAT
1 CAAGCATTAGCGGCGCTTTTCCGAAAACGCCGCTAAAGAT
37027433 CAAGCATTAG
1 CAAGCATTAG
37027443 TGGAAATCGG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 41 0.89
41 5 0.11
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (40 bp):
CAAGCATTAGCGGCGCTTTTCCGAAAACGCCGCTAAAGAT
Found at i:37027556 original size:40 final size:40
Alignment explanation
Indices: 37027456--37027556 Score: 112
Period size: 40 Copynumber: 2.5 Consensus size: 40
37027446 AAATCGGGAT
* * * *
37027456 TTAGCGGCGCTTTTCGAAAAATGCTGCTAAATATCAAGCA
1 TTAGCGGCGCTTTTAGAAAAACGCCGCTAAAGATCAAGCA
* * **
37027496 TTAGCGGCGCTTTCAAAAAAACGCCGCTAAAGATTGAGCA
1 TTAGCGGCGCTTTTAGAAAAACGCCGCTAAAGATCAAGCA
* *
37027536 TTAGCGGCGTTTTTTGAAAAA
1 TTAGCGGCGCTTTTAGAAAAA
37027557 TGCCACAAAA
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (40 bp):
TTAGCGGCGCTTTTAGAAAAACGCCGCTAAAGATCAAGCA
Found at i:37027829 original size:14 final size:14
Alignment explanation
Indices: 37027812--37027862 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
37027802 TATTTTGTGA
37027812 TTAGAGTTTTGAGT
1 TTAGAGTTTTGAGT
* *
37027826 TTAGGGTTTAGAGT
1 TTAGAGTTTTGAGT
*
37027840 TTAAAGTTTGTG-GT
1 TTAGAGTTT-TGAGT
*
37027854 TTAGGGTTT
1 TTAGAGTTT
37027863 ATTTTTTATA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
14 28 0.97
15 1 0.03
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (14 bp):
TTAGAGTTTTGAGT
Found at i:37027847 original size:21 final size:21
Alignment explanation
Indices: 37027812--37027863 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
37027802 TATTTTGTGA
**
37027812 TTAGAGTTTTGAGTTTAG-GGT
1 TTAGAGTTTAAAGTTT-GTGGT
37027833 TTAGAGTTTAAAGTTTGTGGT
1 TTAGAGTTTAAAGTTTGTGGT
*
37027854 TTAGGGTTTA
1 TTAGAGTTTA
37027864 TTTTTTATAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 1 0.04
21 26 0.96
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (21 bp):
TTAGAGTTTAAAGTTTGTGGT
Found at i:37028104 original size:13 final size:14
Alignment explanation
Indices: 37028075--37028101 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37028065 TGGTTTATGA
37028075 TTTAGGGGTTGGGG
1 TTTAGGGGTTGGGG
37028089 TTTAGGGGTTGGG
1 TTTAGGGGTTGGG
37028102 TTTGGGATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.00, G:0.56, T:0.37
Consensus pattern (14 bp):
TTTAGGGGTTGGGG
Found at i:37030144 original size:43 final size:43
Alignment explanation
Indices: 37030097--37030184 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
37030087 AAATATAAAT
*
37030097 ATATGTATATTATAACAATAAAACAACGTAAGTATGTACATAC
1 ATATGTATATTATAAAAATAAAACAACGTAAGTATGTACATAC
*
37030140 ATATGTATATTATAAAAATAAAATAACGTAAGTATGTACATAC
1 ATATGTATATTATAAAAATAAAACAACGTAAGTATGTACATAC
37030183 AT
1 AT
37030185 TTATAAGTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.50, C:0.09, G:0.09, T:0.32
Consensus pattern (43 bp):
ATATGTATATTATAAAAATAAAACAACGTAAGTATGTACATAC
Done.