Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 103 of 297
Found at i:37030403 original size:23 final size:22
Alignment explanation
Indices: 37030377--37030430 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
37030367 TGTATACGCG
37030377 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATA-ATACTAA
* *
37030400 TACATAATAATAATAATAGTAA
1 TACATAATAAAAATAATACTAA
37030422 TAC-TAATAA
1 TACATAATAA
37030431 TACTAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 6 0.21
22 9 0.31
23 14 0.48
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.31
Consensus pattern (22 bp):
TACATAATAAAAATAATACTAA
Found at i:37030411 original size:3 final size:3
Alignment explanation
Indices: 37030380--37030448 Score: 66
Period size: 3 Copynumber: 22.3 Consensus size: 3
37030370 ATACGCGTAC
* * * *
37030380 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* *
37030427 ATA ATA CTA ATA ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA A
37030449 CAAGGATATT
Statistics
Matches: 52, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
3 46 0.88
4 6 0.12
ACGTcount: A:0.62, C:0.06, G:0.01, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:37030933 original size:11 final size:12
Alignment explanation
Indices: 37030913--37030950 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
37030903 AGAAAAAAAA
37030913 GAAGAGAGAGAGG
1 GAAGAGAGA-AGG
37030926 GAAGAGAGAAGG
1 GAAGAGAGAAGG
37030938 G-AGAGAGAAGG
1 GAAGAGAGAAGG
37030949 GA
1 GA
37030951 GGGGGAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.46
12 4 0.17
13 9 0.38
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:37031830 original size:7 final size:7
Alignment explanation
Indices: 37031818--37031842 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
37031808 AATCTTCAAA
37031818 AAAATTT
1 AAAATTT
37031825 AAAATTT
1 AAAATTT
37031832 AAAATTT
1 AAAATTT
37031839 AAAA
1 AAAA
37031843 CTAAAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (7 bp):
AAAATTT
Found at i:37031842 original size:22 final size:22
Alignment explanation
Indices: 37031825--37031882 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
37031815 AAAAAAATTT
37031825 AAAATTTAAAATTTAAAACTAA
1 AAAATTTAAAATTTAAAACTAA
** * *
37031847 AAAATAAAAAACTTAAAACTTA
1 AAAATTTAAAATTTAAAACTAA
*
37031869 AAAATTTAATATTT
1 AAAATTTAAAATTT
37031883 TAGTCCATAT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAATTTAAAATTTAAAACTAA
Found at i:37031848 original size:29 final size:29
Alignment explanation
Indices: 37031816--37031871 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
37031806 AAAATCTTCA
** * *
37031816 AAAAAATTTAAAATTTAAAATTTAAAACT
1 AAAAAATAAAAAACTTAAAACTTAAAACT
37031845 AAAAAATAAAAAACTTAAAACTTAAAA
1 AAAAAATAAAAAACTTAAAACTTAAAA
37031872 ATTTAATATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (29 bp):
AAAAAATAAAAAACTTAAAACTTAAAACT
Found at i:37031871 original size:14 final size:14
Alignment explanation
Indices: 37031818--37031871 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
37031808 AATCTTCAAA
*
37031818 AAAATTTAAAATTT
1 AAAATTTAAAACTT
*
37031832 AAAATTTAAAACTAA
1 AAAATTTAAAACT-T
**
37031847 AAAATAAAAAACTT
1 AAAATTTAAAACTT
*
37031861 AAAACTTAAAA
1 AAAATTTAAAA
37031872 ATTTAATATT
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
14 20 0.65
15 11 0.35
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.28
Consensus pattern (14 bp):
AAAATTTAAAACTT
Found at i:37034495 original size:8 final size:8
Alignment explanation
Indices: 37034482--37034518 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
37034472 TTACTACGTT
37034482 TTTTAAAA
1 TTTTAAAA
37034490 TTTTAAAA
1 TTTTAAAA
*
37034498 TTTTAACA
1 TTTTAAAA
37034506 TTTTGAAAA
1 TTTT-AAAA
37034515 TTTT
1 TTTT
37034519 TATTAATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
8 19 0.73
9 7 0.27
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (8 bp):
TTTTAAAA
Found at i:37036493 original size:15 final size:16
Alignment explanation
Indices: 37036475--37036504 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
37036465 TTTTTGTCTC
37036475 ATATATGAT-TAAAAT
1 ATATATGATCTAAAAT
37036490 ATATATGATCTAAAA
1 ATATATGATCTAAAA
37036505 GCAAGAGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37
Consensus pattern (16 bp):
ATATATGATCTAAAAT
Found at i:37054442 original size:34 final size:34
Alignment explanation
Indices: 37054402--37054469 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
37054392 AGTAAACCTT
37054402 AAATCCTAAACCATTTAATATATAAAAAGCCTAA
1 AAATCCTAAACCATTTAATATATAAAAAGCCTAA
*
37054436 AAATCCTAAACCATTTAATATATATAAAGCCTAA
1 AAATCCTAAACCATTTAATATATAAAAAGCCTAA
37054470 TCCTTAAGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.51, C:0.18, G:0.03, T:0.28
Consensus pattern (34 bp):
AAATCCTAAACCATTTAATATATAAAAAGCCTAA
Found at i:37054523 original size:21 final size:21
Alignment explanation
Indices: 37054499--37054557 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
37054489 CTTAACCCTT
* *
37054499 AACCCCTAAGCCTTAAACCCC
1 AACCCCTAAACCATAAACCCC
* **
37054520 AACCCTTAAACCATAAACCAT
1 AACCCCTAAACCATAAACCCC
*
37054541 AATCCCTAAACCCATAA
1 AACCCCTAAA-CCATAA
37054558 TCCATAAACC
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 24 0.80
22 6 0.20
ACGTcount: A:0.42, C:0.39, G:0.02, T:0.17
Consensus pattern (21 bp):
AACCCCTAAACCATAAACCCC
Found at i:37054529 original size:14 final size:15
Alignment explanation
Indices: 37054491--37054531 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
37054481 ACCTAACACT
37054491 TAACCCTT-AACCCC
1 TAACCCTTAAACCCC
*
37054505 TAAGCCTTAAACCCC
1 TAACCCTTAAACCCC
37054520 -AACCCTTAAACC
1 TAACCCTTAAACC
37054532 ATAAACCATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.34, C:0.44, G:0.02, T:0.20
Consensus pattern (15 bp):
TAACCCTTAAACCCC
Found at i:37054572 original size:22 final size:21
Alignment explanation
Indices: 37054523--37054630 Score: 69
Period size: 22 Copynumber: 5.0 Consensus size: 21
37054513 AAACCCCAAC
*
37054523 CCTTAAACCATAAACCATAAT
1 CCTTAAACCATAAACCATAAA
* *
37054544 CCCTAAACCCATAATCCATAAA
1 CCTTAAA-CCATAAACCATAAA
*
37054566 CCTTAAA--ATAGTAACTCATACA
1 CCTTAAACCATA--AAC-CATAAA
* *
37054588 CTTTAAACTC-TAAACCATATA
1 CCTTAAAC-CATAAACCATAAA
* * *
37054609 CCCTAAATCATAAACCCTAAA
1 CCTTAAACCATAAACCATAAA
37054630 C
1 C
37054631 TATAATGATA
Statistics
Matches: 66, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
19 3 0.05
20 1 0.02
21 28 0.42
22 32 0.48
24 2 0.03
ACGTcount: A:0.45, C:0.30, G:0.01, T:0.24
Consensus pattern (21 bp):
CCTTAAACCATAAACCATAAA
Found at i:37054620 original size:14 final size:14
Alignment explanation
Indices: 37054591--37054635 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
37054581 TCATACACTT
*
37054591 TAAACTCTAAACCA
1 TAAACCCTAAACCA
* *
37054605 TATACCCTAAATCA
1 TAAACCCTAAACCA
*
37054619 TAAACCCTAAACTA
1 TAAACCCTAAACCA
37054633 TAA
1 TAA
37054636 TGATAATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.24
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:37054741 original size:7 final size:7
Alignment explanation
Indices: 37054729--37054776 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
37054719 ACTAATTAAT
37054729 CTAAACC
1 CTAAACC
37054736 CTAAACTC
1 CTAAAC-C
*
37054744 CTAATCC
1 CTAAACC
*
37054751 CTAATCC
1 CTAAACC
37054758 CTAAACC
1 CTAAACC
* *
37054765 GTAAATC
1 CTAAACC
37054772 CTAAA
1 CTAAA
37054777 ACATGAACCT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
7 29 0.83
8 6 0.17
ACGTcount: A:0.40, C:0.35, G:0.02, T:0.23
Consensus pattern (7 bp):
CTAAACC
Found at i:37054808 original size:23 final size:21
Alignment explanation
Indices: 37054782--37054829 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
37054772 CTAAAACATG
37054782 AACCTTAAACCCACTAACACTTA
1 AACCTTAAA-CCAC-AACACTTA
*
37054805 AACCTTAAACCACAACCCTTA
1 AACCTTAAACCACAACACTTA
37054826 AACC
1 AACC
37054830 ACCCTTAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 11 0.46
22 4 0.17
23 9 0.38
ACGTcount: A:0.44, C:0.38, G:0.00, T:0.19
Consensus pattern (21 bp):
AACCTTAAACCACAACACTTA
Found at i:37054838 original size:25 final size:25
Alignment explanation
Indices: 37054807--37054854 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
37054797 AACACTTAAA
37054807 CCTTAAACCACAA-CCCTTAAACCAC
1 CCTTAAACCACAATCCC-TAAACCAC
*
37054832 CCTTAAACCATAATCCCTAAACC
1 CCTTAAACCACAATCCCTAAACC
37054855 CATAATCCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 18 0.86
26 3 0.14
ACGTcount: A:0.40, C:0.42, G:0.00, T:0.19
Consensus pattern (25 bp):
CCTTAAACCACAATCCCTAAACCAC
Found at i:37054857 original size:15 final size:15
Alignment explanation
Indices: 37054835--37054869 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
37054825 AAACCACCCT
*
37054835 TAAA-CCATAATCCC
1 TAAACCCATAATCCA
37054849 TAAACCCATAATCCA
1 TAAACCCATAATCCA
37054864 TAAACC
1 TAAACC
37054870 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.46, C:0.34, G:0.00, T:0.20
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:37054874 original size:22 final size:21
Alignment explanation
Indices: 37054837--37054920 Score: 69
Period size: 22 Copynumber: 3.9 Consensus size: 21
37054827 ACCACCCTTA
* *
37054837 AACCATAATCCCTAAACCCAT
1 AACCATAAACCTTAAACCCAT
***
37054858 AATCCATAAACCTTAAAATAAT
1 AA-CCATAAACCTTAAACCCAT
* *
37054880 AACTCATAAACATTAAACCCTT
1 AAC-CATAAACCTTAAACCCAT
* *
37054902 AACCATATACCGTAAACCC
1 AACCATAAACCTTAAACCC
37054921 TAAACTATAA
Statistics
Matches: 48, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
21 16 0.33
22 32 0.67
ACGTcount: A:0.46, C:0.30, G:0.01, T:0.23
Consensus pattern (21 bp):
AACCATAAACCTTAAACCCAT
Found at i:37054993 original size:44 final size:44
Alignment explanation
Indices: 37054943--37055038 Score: 147
Period size: 44 Copynumber: 2.2 Consensus size: 44
37054933 ATAATTAATT
* *
37054943 CAATATTTTAAAATTAATACTATCTCTTTTATAATTATATAAGA
1 CAATATTTTAAAATTAATACTATCTCTTTTACAACTATATAAGA
* *
37054987 CAATATTTTAAAATTATTACTATCTTTTTTACAACTATATAAGA
1 CAATATTTTAAAATTAATACTATCTCTTTTACAACTATATAAGA
*
37055031 AAATATTT
1 CAATATTT
37055039 AACATATAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.46
Consensus pattern (44 bp):
CAATATTTTAAAATTAATACTATCTCTTTTACAACTATATAAGA
Found at i:37057771 original size:47 final size:47
Alignment explanation
Indices: 37057702--37057860 Score: 246
Period size: 47 Copynumber: 3.4 Consensus size: 47
37057692 GGTGTACAAG
*
37057702 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* *
37057749 GTGTGTATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* * * *
37057796 GTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
37057843 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
37057861 TCCCGAAGGG
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 103 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
Found at i:37058741 original size:50 final size:50
Alignment explanation
Indices: 37058683--37058782 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
37058673 TCCGTTCTTT
*
37058683 GAATCTCTGTTTTATAGATTTTGGTTCGTCAGCTATCGGACTCGGGATTA
1 GAATCTCTGTTTTATAGATTTTGGTTCGTCAGCCATCGGACTCGGGATTA
37058733 GAATCTCTGTTTTATAGATTTTGGTTCGTCAGCCATCGGACTCGGGATTA
1 GAATCTCTGTTTTATAGATTTTGGTTCGTCAGCCATCGGACTCGGGATTA
37058783 TTGAAGTCGA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.20, C:0.17, G:0.24, T:0.39
Consensus pattern (50 bp):
GAATCTCTGTTTTATAGATTTTGGTTCGTCAGCCATCGGACTCGGGATTA
Found at i:37060155 original size:119 final size:112
Alignment explanation
Indices: 37060035--37060245 Score: 271
Period size: 115 Copynumber: 1.8 Consensus size: 112
37060025 ATGTTGATAT
*
37060035 TTTAAG-TTATATTTGCATGAAATATTATTGTATATATATTATGTAATTTATATTGTTATATTCA
1 TTTAAGATTATATTTGCATGAAATATTA----ATATATATTATGTAATTTATATCGTTAT-TT-A
* * *
37060099 TTATTTTCTATGTTGTATTTTGCATGAAATGTTAATGTATGTACATTTATGTTA
60 TCATTTTCTATATTATA-TTTGCATGAAATGTTAATGTATGTACATTTATGTTA
* * * *
37060153 TTTATGATTATATTTGCATGAAATGTTAATGTATATTATGTAATTTATGTCGTTATTTATCATTT
1 TTTAAGATTATATTTGCATGAAATATTAATATATATTATGTAATTTATATCGTTATTTATCATTT
*
37060218 TCTATATTATATTTGCATGAAGTGTTAA
66 TCTATATTATATTTGCATGAAATGTTAA
37060246 AATATGTATC
Statistics
Matches: 83, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
112 16 0.19
113 15 0.18
114 2 0.02
115 25 0.30
118 5 0.06
119 20 0.24
ACGTcount: A:0.30, C:0.05, G:0.12, T:0.53
Consensus pattern (112 bp):
TTTAAGATTATATTTGCATGAAATATTAATATATATTATGTAATTTATATCGTTATTTATCATTT
TCTATATTATATTTGCATGAAATGTTAATGTATGTACATTTATGTTA
Found at i:37071578 original size:53 final size:53
Alignment explanation
Indices: 37071520--37071627 Score: 191
Period size: 53 Copynumber: 2.0 Consensus size: 53
37071510 GGATGGAAGA
*
37071520 GTAAAGACGT-TCGAAATAGGATTCATTTTCATAAACATTTTTCATTATAATAT
1 GTAAAGACGTCT-GAAATAGGATTCATTTTCATAAACATTTTTCATCATAATAT
37071573 GTAAAGACGTCTGAAATAGGATTCATTTTCATAAACATTTTTCATCATAATAT
1 GTAAAGACGTCTGAAATAGGATTCATTTTCATAAACATTTTTCATCATAATAT
37071626 GT
1 GT
37071628 CTATTTAGGA
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
53 52 0.98
54 1 0.02
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (53 bp):
GTAAAGACGTCTGAAATAGGATTCATTTTCATAAACATTTTTCATCATAATAT
Found at i:37071879 original size:90 final size:90
Alignment explanation
Indices: 37071734--37072871 Score: 1723
Period size: 90 Copynumber: 12.7 Consensus size: 90
37071724 GTAGATCACC
* *
37071734 GATGACAGATTTGGCGTCTCTATATTAGACAGGGAGTAGATC-AAGGATAGCAGATCTGACATTC
1 GATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAA-GATAGCAGATCTGACATTC
37071798 GTGTGTTTACATCGAAGCAGATCGAA
65 GTGTGTTTACATCGAAGCAGATCGAA
* * * *
37071824 GATGACAGATTTGGCGTCTCTATATTAGACGGGGAGCAGATCGAGGATAGTAGATCTGACATTCG
1 GATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
* * *
37071889 TGTGTTTATATTGAAGCAGATCTAA
66 TGTGTTTACATCGAAGCAGATCGAA
* * * * *
37071914 TATGACAGATTTTGCGTCTCTGTATTAGATAGGGAGTAGATCGAAGATAGCAGATCTGACATTCA
1 GATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
37071979 TGTGTTTACATCGAAGCAGATCGAA
66 TGTGTTTACATCGAAGCAGATCGAA
* *
37072004 GATGACAGATTTGGCGTCTCTGTATTAGATAGGGAGCAGATCAAAGATAGCAGATCTGACATTCG
1 GATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
* *
37072069 TGTATTTACATCGAAGAAGATCGAA
66 TGTGTTTACATCGAAGCAGATCGAA
* *
37072094 GATGACAGATTTGGCGTCTCTGTATTAGATAGGGAGCAGATCAAAGATAGCAGATCTGACATTCG
1 GATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
* *
37072159 TGTATTTACATCGAAGAAGATCGAA
66 TGTGTTTACATCGAAGCAGATCGAA
* *
37072184 GATGACAGATTTGGCGTCTCTGTATTAGATAGGGAGCAGATCAAAGATAGCAGATCTGACATTCG
1 GATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
* *
37072249 TGTATTTACATCGAAGAAGATCGAA
66 TGTGTTTACATCGAAGCAGATCGAA
* *
37072274 GATGACAGATTTGGCGTCTCTGTATTAGATAGGGAGCAGATCAAAGATAGCAGATCTGACATTCG
1 GATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
* *
37072339 TGTATTTACATCGAAGAAGATCGAA
66 TGTGTTTACATCGAAGCAGATCGAA
*
37072364 GATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTC-
1 GATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
* *
37072428 ---GTATA-GT-GAAGCAGATCGAA
66 TGTGTTTACATCGAAGCAGATCGAA
* **
37072448 GATTATGGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
1 GATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
*
37072513 TGTGTTTATATCGAAGCAGATCGAA
66 TGTGTTTACATCGAAGCAGATCGAA
* * *
37072538 GATGATAGATTTGGCGTCTCTGTATTAGACGGGGAGCGGATCGAAGATAGCAGATCTGACATTCG
1 GATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
*
37072603 TGTATTTACATCGAAGCAGATCGAA
66 TGTGTTTACATCGAAGCAGATCGAA
* * * * *
37072628 GATGACAGATTTGGCGTCTCTATATTAGACGGGGAGCAAATCGTAGATAGCAGATCTGGCATTCG
1 GATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
*
37072693 GGTGTTTACATCGAAGCAGATCGAA
66 TGTGTTTACATCGAAGCAGATCGAA
* * * * *
37072718 GATGACAGATTTGGAGTCTCTGTATTAGACGGGGAGCAGATCGAAGTTAGTAGATCTAACATTCG
1 GATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
37072783 TGTGTTTACATCGAAGCAGATCGAA
66 TGTGTTTACATCGAAGCAGATCGAA
** *
37072808 GATGACAGATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCGAAGATAGCAGATTTGACATTC
1 GATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTC
37072872 TTGAGTTACA
Statistics
Matches: 973, Mismatches: 68, Indels: 14
0.92 0.06 0.01
Matches are distributed among these distances:
84 72 0.07
85 1 0.00
86 3 0.00
88 4 0.00
89 1 0.00
90 891 0.92
91 1 0.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (90 bp):
GATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
TGTGTTTACATCGAAGCAGATCGAA
Found at i:37074041 original size:13 final size:14
Alignment explanation
Indices: 37074015--37074044 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
37074005 TTTATTATTT
37074015 ATATATTGTTTTAA
1 ATATATTGTTTTAA
37074029 ATATATT-TTTTAA
1 ATATATTGTTTTAA
37074042 ATA
1 ATA
37074045 CCTCATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (14 bp):
ATATATTGTTTTAA
Found at i:37076923 original size:79 final size:81
Alignment explanation
Indices: 37076781--37076963 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
37076771 TACTCGTTCA
* * * *
37076781 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGTACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGA
* *
37076845 TTTAGTAAC-TCGCACC
66 TATAGTAACTTAGCA-C
**
37076861 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-AGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCGG
* *
37076923 ATATGGTCACTTAGCAC
65 ATATAGTAACTTAGCAC
*
37076940 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
37076964 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 2 0.02
79 58 0.66
80 28 0.32
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:37076963 original size:40 final size:40
Alignment explanation
Indices: 37076760--37076963 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
37076750 CGGAATTTAA
** *
37076760 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
37076800 CCGGTTATAGTAACTCGTACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37076840 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37076879 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-AGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
37076919 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
37076959 CCGGA
1 CCGGA
37076964 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 33 0.24
40 94 0.68
41 11 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37079690 original size:67 final size:67
Alignment explanation
Indices: 37079578--37079708 Score: 187
Period size: 67 Copynumber: 2.0 Consensus size: 67
37079568 CCTTGCTAGT
* *
37079578 GAGGTAGTTGTCTGAGGTATATCATCGTTTACATAAACATCAGAAC-AGTTCAAAGACATCACGT
1 GAGGTAGTTGTCTGAGGTATATCATCGTTTACACAAACATCAGAACGA-CTCAAAGACATCACGT
37079642 AGG
65 AGG
*
37079645 GAGGTAGTTGTGTGAGGTATATCATCGTTTACACAAA-AGGT-AGAACGACTCAAAGACATCACG
1 GAGGTAGTTGTCTGAGGTATATCATCGTTTACACAAACA--TCAGAACGACTCAAAGACATCACG
37079708 T
64 T
37079709 CTACTGGTCA
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
66 1 0.02
67 55 0.95
68 2 0.03
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (67 bp):
GAGGTAGTTGTCTGAGGTATATCATCGTTTACACAAACATCAGAACGACTCAAAGACATCACGTA
GG
Found at i:37082365 original size:40 final size:40
Alignment explanation
Indices: 37082310--37083220 Score: 1635
Period size: 40 Copynumber: 22.8 Consensus size: 40
37082300 CGGATGATAA
* * * * **
37082310 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
**
37082350 CCGGGCTAAGTCCCGAAGGCATTTGTTTGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
37082390 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
37082430 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
37082470 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
37082510 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
37082550 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
37082590 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
37082630 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
37082670 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
37082710 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
37082750 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
37082790 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
37082830 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
37082870 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
37082910 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
37082950 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
37082990 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
37083030 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
37083070 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* * *
37083110 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* * * * * *
37083150 CCGGGATAAGACCCAAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* * *
37083190 CCAGGCTATGTCCCGAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
37083221 AGCTATATCC
Statistics
Matches: 846, Mismatches: 25, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
39 8 0.01
40 838 0.99
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
Found at i:37084960 original size:24 final size:25
Alignment explanation
Indices: 37084933--37084987 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 25
37084923 AAATTATTCA
37084933 ATTTATTTTATTT-TAGATATAAAT
1 ATTTATTTTATTTATAGATATAAAT
* ** *
37084957 ATTT-GTTTATTTATATTTATATAT
1 ATTTATTTTATTTATAGATATAAAT
37084981 ATTTATT
1 ATTTATT
37084988 CGCTAACATA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
23 7 0.29
24 16 0.67
25 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.64
Consensus pattern (25 bp):
ATTTATTTTATTTATAGATATAAAT
Found at i:37093578 original size:7 final size:7
Alignment explanation
Indices: 37093566--37093590 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
37093556 TGAGAGCATT
37093566 GATATGA
1 GATATGA
37093573 GATATGA
1 GATATGA
37093580 GATATGA
1 GATATGA
37093587 GATA
1 GATA
37093591 GTAGTGGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.28, T:0.28
Consensus pattern (7 bp):
GATATGA
Found at i:37096621 original size:26 final size:26
Alignment explanation
Indices: 37096585--37096634 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
37096575 ATTAGAAAAG
37096585 TTAACTTGTATATAATTTGAGGACTA
1 TTAACTTGTATATAATTTGAGGACTA
*
37096611 TTAACTTGTATATAATTTGGGGAC
1 TTAACTTGTATATAATTTGAGGAC
37096635 CATAACCCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (26 bp):
TTAACTTGTATATAATTTGAGGACTA
Found at i:37103664 original size:46 final size:46
Alignment explanation
Indices: 37103614--37103786 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
37103604 TGGTTGAGCA
37103614 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
37103660 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
37103705 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
37103753 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37103787 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:37103770 original size:93 final size:93
Alignment explanation
Indices: 37103611--37103781 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
37103601 GGATGGTTGA
* *
37103611 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37103676 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
37103704 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37103769 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
37103782 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:37111248 original size:46 final size:46
Alignment explanation
Indices: 37111198--37111372 Score: 314
Period size: 46 Copynumber: 3.8 Consensus size: 46
37111188 TGGTTGAGCA
37111198 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
37111244 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
37111290 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
37111336 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37111373 GCGGGTTACA
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 125 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:37113425 original size:49 final size:47
Alignment explanation
Indices: 37113314--37113490 Score: 162
Period size: 49 Copynumber: 3.7 Consensus size: 47
37113304 CGAGATGTAT
* * * *
37113314 CAGTGTAAGACCATGTTTGGGACATGGGATCGGCACGGATATGTGA-GAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACTC-G--ATG-GATGAGC
* * * * *
37113364 TAGTGTAA-ACCATGTCTGGGACATGGCGTTGACCTCGATTTTGAT-AGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTCGA--TGGATGAGC
* *
37113412 CAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGATGGATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATGGATGAGC
*
37113459 CAGTGTAAGACCATGTGTGGGACATGGCATCG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCG
37113491 GCATTATACC
Statistics
Matches: 104, Mismatches: 17, Indels: 15
0.76 0.12 0.11
Matches are distributed among these distances:
46 4 0.04
47 34 0.33
48 15 0.14
49 42 0.40
50 9 0.09
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGATGGATGAGC
Found at i:37113472 original size:145 final size:138
Alignment explanation
Indices: 37113130--37113493 Score: 376
Period size: 140 Copynumber: 2.6 Consensus size: 138
37113120 ATTTGTGTGC
* * *
37113130 CAGTGTAAGACATTTCTGGGACATGCATCAGCCAC-ATTATGAGAGCCAGTGTAAGACCATGTCT
1 CAGTGTAAGACATGTCTGGGACATGCATCAGCTACGA-GAT--GAGCCAGTGTAAGACCATGTCT
* ** *
37113194 GGGACGTGGCATCGGCATTGAGATGAGAGCTAATATAAAACATGTCTGGGACATGCATTGGCCTC
63 GGGACATGGCATCGGCACGGAGATGAGAGCTAATATAAAACATGTCTGGGACATGCATTGACCTC
37113259 GAGATGGAAGT
128 GAGATGGAAGT
* * * *
37113270 CAGTGTGAGATATGTCTGGGACATGCATCAGCTACGAGATGTA-TCAGTGTAAGACCATGTTTGG
1 CAGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGATG-AGCCAGTGTAAGACCATGTCTGG
* * * * * *
37113334 GACATGGGATCGGCACGGATATGTGAGAGCTAGTGTAAACCATGTCTGGGACATGGCGTTGACCT
65 GACATGGCATCGGCACGGAGA--TGAGAGCTAATATAAAACATGTCTGGGACAT-GCATTGACCT
** *
37113399 CGATTTTGATAGT
127 CGAGATGGA-AGT
* *
37113412 CAGTGTAAGACCATGTTTGGGACATGGCATC-GACT-TGATGGATGAGCCAGTGTAAGACCATGT
1 CAGTGTAAGA-CATGTCTGGGACAT-GCATCAG-CTACGA--GATGAGCCAGTGTAAGACCATGT
*
37113475 GTGGGACATGGCATCGGCA
61 CTGGGACATGGCATCGGCA
37113494 TTATACCCTA
Statistics
Matches: 185, Mismatches: 27, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
138 36 0.19
139 1 0.01
140 61 0.33
141 15 0.08
142 12 0.06
143 15 0.08
144 8 0.04
145 37 0.20
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (138 bp):
CAGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGATGAGCCAGTGTAAGACCATGTCTGGG
ACATGGCATCGGCACGGAGATGAGAGCTAATATAAAACATGTCTGGGACATGCATTGACCTCGAG
ATGGAAGT
Found at i:37118552 original size:16 final size:15
Alignment explanation
Indices: 37118514--37118561 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
37118504 ATATATATAT
*
37118514 ATATATATATTACAA
1 ATATAAATATTACAA
*
37118529 TTAT-AATATTACATA
1 ATATAAATATTACA-A
*
37118544 ATATAAATATTATAA
1 ATATAAATATTACAA
37118559 ATA
1 ATA
37118562 ATTATAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
14 8 0.30
15 11 0.41
16 8 0.30
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (15 bp):
ATATAAATATTACAA
Found at i:37124019 original size:22 final size:21
Alignment explanation
Indices: 37123969--37124019 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
37123959 ATTAAAATTT
37123969 TATAAAT-TAAAAAATAATAA
1 TATAAATATAAAAAATAATAA
* *
37123989 TA-ATTATATTAAAAATAAATAA
1 TATA-AATATAAAAAAT-AATAA
37124011 TATAAATAT
1 TATAAATAT
37124020 CATTATATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 6
0.73 0.09 0.18
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 7 0.29
22 11 0.46
23 1 0.04
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (21 bp):
TATAAATATAAAAAATAATAA
Found at i:37129230 original size:38 final size:37
Alignment explanation
Indices: 37129172--37129251 Score: 151
Period size: 37 Copynumber: 2.2 Consensus size: 37
37129162 AAGAAGGAGT
37129172 TAAAAAACTAAAATGGTTTTTTGTATGAATTTCGTTA
1 TAAAAAACTAAAATGGTTTTTTGTATGAATTTCGTTA
37129209 TAAAAAACTAAAATGGTTTTTTGTATGAATTTCGTTA
1 TAAAAAACTAAAATGGTTTTTTGTATGAATTTCGTTA
*
37129246 TCAAAA
1 TAAAAA
37129252 CCCATTCTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.41
Consensus pattern (37 bp):
TAAAAAACTAAAATGGTTTTTTGTATGAATTTCGTTA
Found at i:37134118 original size:39 final size:40
Alignment explanation
Indices: 37133908--37134138 Score: 304
Period size: 40 Copynumber: 5.8 Consensus size: 40
37133898 GGATATAACT
* ** *
37133908 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
37133948 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
37133988 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
37134028 ATTCGCACAAATGCCTTCGGGACTTATCTCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
37134068 ACTCGCACAGATGCCTTCGGGACTTAGCCCGGA-TTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* ** *
37134107 ACTAGTGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
37134139 TTTTCATCCA
Statistics
Matches: 171, Mismatches: 19, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
39 34 0.20
40 135 0.79
41 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:37139157 original size:25 final size:25
Alignment explanation
Indices: 37139123--37139199 Score: 145
Period size: 25 Copynumber: 3.1 Consensus size: 25
37139113 TGATTATGGG
*
37139123 AGTCTGCTAGCCAAGTTGCAAGCTA
1 AGTCTGCTAGCCAAGTTGCAAGTTA
37139148 AGTCTGCTAGCCAAGTTGCAAGTTA
1 AGTCTGCTAGCCAAGTTGCAAGTTA
37139173 AGTCTGCTAGCCAAGTTGCAAGTTA
1 AGTCTGCTAGCCAAGTTGCAAGTTA
37139198 AG
1 AG
37139200 CCGACTAAGA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 51 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.26
Consensus pattern (25 bp):
AGTCTGCTAGCCAAGTTGCAAGTTA
Found at i:37143100 original size:56 final size:56
Alignment explanation
Indices: 37143014--37143178 Score: 242
Period size: 56 Copynumber: 2.9 Consensus size: 56
37143004 CATGGGATCG
*
37143014 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCA
1 ATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGATTCCA
* *
37143070 ATATATGTGCGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGATTCCG
1 ATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGATTCCA
* * ***
37143126 ATATATGTGTGCGAGTAAGACCCTGTCTGGGACAG-TGGCATCGATATGTGATT
1 ATATATGTGTGCGAGTAAGACCATGTTTAATAC-GTTGGCATCGATATGTGATT
37143179 ACATGTAAGA
Statistics
Matches: 99, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
56 98 0.99
57 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGATTCCA
Found at i:37143483 original size:15 final size:15
Alignment explanation
Indices: 37143463--37143494 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
37143453 TATTAAGGTT
37143463 TGATTAATGAGTATA
1 TGATTAATGAGTATA
37143478 TGATTAATGAGTATA
1 TGATTAATGAGTATA
37143493 TG
1 TG
37143495 TAAACAAGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.22, T:0.41
Consensus pattern (15 bp):
TGATTAATGAGTATA
Found at i:37146367 original size:16 final size:17
Alignment explanation
Indices: 37146338--37146369 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
37146328 AAGGTCACTT
37146338 TCATAATGATCATGAAC
1 TCATAATGATCATGAAC
37146355 TCATAAT-ATCATGAA
1 TCATAATGATCATGAA
37146370 GCTAATGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (17 bp):
TCATAATGATCATGAAC
Found at i:37148963 original size:23 final size:23
Alignment explanation
Indices: 37148937--37149006 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 23
37148927 CGAATTTGAC
37148937 TTTTGAGGAGGAGCCAGTTCAGA
1 TTTTGAGGAGGAGCCAGTTCAGA
* * ** *
37148960 TTTT-A-GACGCGATA-TT-AAA
1 TTTTGAGGAGGAGCCAGTTCAGA
37148979 GTTTTGAGGAGGAGCCAGTTCAGA
1 -TTTTGAGGAGGAGCCAGTTCAGA
37149003 TTTT
1 TTTT
37149007 AGACGCGATA
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
19 2 0.06
20 6 0.19
21 6 0.19
22 6 0.19
23 10 0.31
24 2 0.06
ACGTcount: A:0.27, C:0.11, G:0.29, T:0.33
Consensus pattern (23 bp):
TTTTGAGGAGGAGCCAGTTCAGA
Found at i:37148985 original size:43 final size:43
Alignment explanation
Indices: 37148937--37149018 Score: 164
Period size: 43 Copynumber: 1.9 Consensus size: 43
37148927 CGAATTTGAC
37148937 TTTTGAGGAGGAGCCAGTTCAGATTTTAGACGCGATATTAAAG
1 TTTTGAGGAGGAGCCAGTTCAGATTTTAGACGCGATATTAAAG
37148980 TTTTGAGGAGGAGCCAGTTCAGATTTTAGACGCGATATT
1 TTTTGAGGAGGAGCCAGTTCAGATTTTAGACGCGATATT
37149019 GTTCATACCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.32
Consensus pattern (43 bp):
TTTTGAGGAGGAGCCAGTTCAGATTTTAGACGCGATATTAAAG
Found at i:37150115 original size:17 final size:17
Alignment explanation
Indices: 37150093--37150137 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
37150083 GCCACACGGG
37150093 CGTGTGGTCACCCATGT
1 CGTGTGGTCACCCATGT
* *
37150110 CGTGTGGCCACCTATGT
1 CGTGTGGTCACCCATGT
37150127 CGTGTGGTCAC
1 CGTGTGGTCAC
37150138 ACACAGCAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.11, C:0.29, G:0.31, T:0.29
Consensus pattern (17 bp):
CGTGTGGTCACCCATGT
Found at i:37150742 original size:13 final size:12
Alignment explanation
Indices: 37150723--37150761 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 12
37150713 AGGATTATGA
37150723 TTATCTGATCTG
1 TTATCTGATCTG
37150735 TATATCTGACTCTG
1 T-TATCTGA-TCTG
37150749 TTATCTGAATCTG
1 TTATCTG-ATCTG
37150762 AAATGGGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 1 0.04
13 17 0.71
14 6 0.25
ACGTcount: A:0.21, C:0.18, G:0.15, T:0.46
Consensus pattern (12 bp):
TTATCTGATCTG
Found at i:37153744 original size:58 final size:60
Alignment explanation
Indices: 37153626--37153751 Score: 150
Period size: 58 Copynumber: 2.1 Consensus size: 60
37153616 TTCCACTTTA
* * * *
37153626 GGGCCTGAACTTTTTTTTGGTCCATGTTAAGCCCTGAACTTGGTAATTGTTCCCACATTG
1 GGGCCTGAACTTTTTTTTGGTCCAAGTTAAGCACTGAACTTGGCAATTGTTCACACATTG
* * * **
37153686 GGGCTTGAAC-TTTTTTT-GTCCAAGTTAATCACTGAGCTTGGCAATTGTTCACGTATT-
1 GGGCCTGAACTTTTTTTTGGTCCAAGTTAAGCACTGAACTTGGCAATTGTTCACACATTG
37153743 GGGCCTGAA
1 GGGCCTGAA
37153752 ATTTAGGGTT
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
57 8 0.14
58 32 0.57
59 7 0.12
60 9 0.16
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (60 bp):
GGGCCTGAACTTTTTTTTGGTCCAAGTTAAGCACTGAACTTGGCAATTGTTCACACATTG
Found at i:37163492 original size:48 final size:46
Alignment explanation
Indices: 37163420--37163738 Score: 271
Period size: 48 Copynumber: 6.7 Consensus size: 46
37163410 TATGTGTGCT
*
37163420 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGACATGAGAGCC
1 AGTGTAAGACCATGT-TAGGACATGGCATCGGC-ATGACATGAGAGCC
* * * * **
37163468 AGTGTAAGACTATGTTTGGAACATGGCATCAGCAATGTCATGAGAGTT
1 AGTGTAAGACCATGTTAGG-ACATGGCATCGGC-ATGACATGAGAGCC
* * * *
37163516 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGCGCT
1 AGTGTAAGACCATGT-TAGGACATGGCATCGGCA-TGACATGAGAGCC
* * * *
37163564 AGTGTAAGACCATGTCTGGGACATGACATCGGCCA-CATTATGAGAGCC
1 AGTGTAAGACCATGT-TAGGACATGGCATCGG-CATGA-CATGAGAGCC
* * *
37163612 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGT-TAGGACATGGCATCGGCA-TGACATGAGAGCC
* * * * *
37163660 AGTGTAAAACCATGTCTAGGACATGGCATCGACCTTGACAAGTGAGCC
1 AGTGTAAGACCATGT-TAGGACATGGCATCG-GCATGACATGAGAGCC
* **
37163708 AGTATAAGACCATGTTCAAAACATGGCATCG
1 AGTGTAAGACCATGTT-AGGACATGGCATCG
37163739 ACAATTCACC
Statistics
Matches: 224, Mismatches: 38, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
47 8 0.04
48 209 0.93
49 7 0.03
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTTAGGACATGGCATCGGCATGACATGAGAGCC
Found at i:37163588 original size:96 final size:96
Alignment explanation
Indices: 37163417--37163689 Score: 354
Period size: 96 Copynumber: 2.8 Consensus size: 96
37163407 TGATATGTGT
* * *
37163417 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TATGACATGAGAGCCAGTGTAAGACTAT
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCAT-TGACATGAGAGCTAGTGTAAGACCAT
* *
37163481 GTTTGGAACATGGCATCAG-CA-ATGTCATGAGA
65 GTCTGGGACATGGCATCAGCCACAT-T-ATGAGA
* * * *
37163513 GTTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGCGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATG
* *
37163578 TCTGGGACATGACATCGGCCACATTATGAGA
66 TCTGGGACATGGCATCAGCCACATTATGAGA
* * * *
37163609 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAAACCATG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATG
*
37163674 TCTAGGACATGGCATC
66 TCTGGGACATGGCATC
37163690 GACCTTGACA
Statistics
Matches: 154, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
96 148 0.96
97 4 0.03
98 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (96 bp):
GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATG
TCTGGGACATGGCATCAGCCACATTATGAGA
Found at i:37163672 original size:144 final size:144
Alignment explanation
Indices: 37163407--37163722 Score: 411
Period size: 144 Copynumber: 2.2 Consensus size: 144
37163397 GACATTTGGG
* * * *
37163407 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGACATGAGAGCCAGTG
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGACATCGGCCATCACATGAGAGCCAGTG
* * * * * *
37163472 TAAGACTATGTTTGGAACATGGCATCAGCAATGTCATGAGAGTTAGTGTAAGACCATGTCTAGGA
66 TAAGACCATGTTAGGAACATGGCATCAGCAATGACACGAGAGCTAGTGTAAAACCATGTCTAGGA
*
37163537 CATGGCATCGGCAT
131 CATGGCATCGACAT
* *
37163551 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGACATCGGCCA-CATTATGAGAGCCAGT
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGACATCGGCCATCA-CATGAGAGCCAGT
* * *
37163615 GTAAGACCATGTCTAGG-ACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAAACCATGTCTAG
65 GTAAGACCATGT-TAGGAACATGGCATCAGCAATGACACGAGAGCTAGTGTAAAACCATGTCTAG
*
37163679 GACATGGCATCGACCT
129 GACATGGCATCGACAT
* * * *
37163695 TGACAAGTGAGCCAGTATAAGACCATGT
1 TGATATGTGAGCTAGTGTAAGACCATGT
37163723 TCAAAACATG
Statistics
Matches: 149, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
143 1 0.01
144 145 0.97
145 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (144 bp):
TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGACATCGGCCATCACATGAGAGCCAGTG
TAAGACCATGTTAGGAACATGGCATCAGCAATGACACGAGAGCTAGTGTAAAACCATGTCTAGGA
CATGGCATCGACAT
Found at i:37163690 original size:96 final size:96
Alignment explanation
Indices: 37163420--37163722 Score: 344
Period size: 96 Copynumber: 3.2 Consensus size: 96
37163410 TATGTGTGCT
* * *
37163420 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TATGACATGAGAGCCAGTGTAAGACTATGT-
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCAT-TGACATGAGAGCTAGTGTAAGACCATGTC
* * **
37163483 TTGGAACATGGCATCAGCAATGTCATGAGAGTT
65 TAGG-ACATGGCATCGGCAATGTCATGAGAGCC
* * *
37163516 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGCGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATGTCT
* *
37163581 GGGACATGACATCGGCCACAT-T-ATGAGAGCC
66 AGGACATGGCATCGG-CA-ATGTCATGAGAGCC
* * *
37163612 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAAACCATGTCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATGTCT
* ** * * *
37163677 AGGACATGGCATCGACCTTGACAAGTGAGCC
66 AGGACATGGCATCGGCAATGTCATGAGAGCC
*
37163708 AGTATAAGACCATGT
1 AGTGTAAGACCATGT
37163723 TCAAAACATG
Statistics
Matches: 176, Mismatches: 25, Indels: 12
0.83 0.12 0.06
Matches are distributed among these distances:
94 1 0.01
95 1 0.01
96 165 0.94
97 7 0.04
98 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATGTCT
AGGACATGGCATCGGCAATGTCATGAGAGCC
Found at i:37165329 original size:6 final size:6
Alignment explanation
Indices: 37165311--37165406 Score: 90
Period size: 6 Copynumber: 15.8 Consensus size: 6
37165301 AAGAAACATT
* *
37165311 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAGGG A-CAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-GA ATCAGA ATCAGA
* * *
37165359 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
37165407 GTAACCGAAT
Statistics
Matches: 74, Mismatches: 9, Indels: 14
0.76 0.09 0.14
Matches are distributed among these distances:
5 5 0.07
6 62 0.84
7 6 0.08
8 1 0.01
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:37165386 original size:31 final size:31
Alignment explanation
Indices: 37165320--37165418 Score: 146
Period size: 31 Copynumber: 3.2 Consensus size: 31
37165310 TATCAGAACT
* * *
37165320 AGAATCAGAATCAGAATCAGAATTAGG-GAC
1 AGAATCAGAATCAGAATCAGTATCAGGTAAC
37165350 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGTATCAGGTAAC
*
37165381 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGTATCAGGTAAC
*
37165412 CGAATCA
1 AGAATCA
37165419 AAAATTAGAA
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
30 25 0.40
31 38 0.60
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGTATCAGGTAAC
Found at i:37165608 original size:27 final size:26
Alignment explanation
Indices: 37165566--37165667 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 26
37165556 GCTCAGTTAT
* * *
37165566 CAGATATTGTGACAGAGTCACTAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
37165593 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
37165619 CAAATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* * *
37165647 CAGATAATGTAGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
37165668 TTAACAGAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 6 0.09
27 51 0.80
28 7 0.11
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:37165854 original size:22 final size:23
Alignment explanation
Indices: 37165826--37165887 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 23
37165816 GCAAATACGT
*
37165826 TTGGCACACAGCCATAAT-CAGG
1 TTGGCACAAAGCCATAATGCAGG
* *
37165848 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGCAGG
*
37165870 TTGACACAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
37165888 TAGAAGGCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.21
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGCAGG
Found at i:37166372 original size:27 final size:27
Alignment explanation
Indices: 37166317--37166484 Score: 157
Period size: 27 Copynumber: 6.3 Consensus size: 27
37166307 GGGGCAAAAT
* * *
37166317 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGAGGTATTTC
*
37166343 GGTAATTCCACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGAGGTATTTC
* *
37166370 GGTAATTCTACCCTAAAGGGGTA-TTC
1 GGTAATTCTACCCTACAGAGGTATTTC
* * *
37166396 TGGTAATTCTACCTTATAGGGGTATTT-
1 -GGTAATTCTACCCTACAGAGGTATTTC
*
37166423 GAGTAATTCTACCCTACAGGGGTATTTC
1 G-GTAATTCTACCCTACAGAGGTATTTC
* *
37166451 GAG-ATTTCTACTCTACA-AGGGTATTTC
1 G-GTAATTCTACCCTACAGA-GGTATTTC
37166478 GGTAATT
1 GGTAATT
37166485 TTGTAAATCG
Statistics
Matches: 120, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
26 19 0.16
27 96 0.80
28 5 0.04
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGAGGTATTTC
Found at i:37166564 original size:27 final size:27
Alignment explanation
Indices: 37166534--37166760 Score: 91
Period size: 27 Copynumber: 8.4 Consensus size: 27
37166524 GGTACTTTGG
*
37166534 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCAAGGGTATTTCAA
* * * *
37166561 TAATTTTATAGGTCAAGGGTATTTTAG
1 TAATTTTACAAGTCAAGGGTATTTCAA
* * ***
37166588 TAATTTTACAAAT-TAGGGATATTTTGG
1 TAATTTTACAAGTCAAGGG-TATTTCAA
* * **
37166615 TAATTTTACAA-ACTAGGGGTATTTTGA
1 TAATTTTACAAGTC-AAGGGTATTTCAA
** ***
37166642 TAATTTTACAAACCAAGGGTATTTTGG
1 TAATTTTACAAGTCAAGGGTATTTCAA
** * ***
37166669 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAGTCAAGGGTATTTCAA
* * * * *
37166696 TAATTTTATAA-ACAAAAGGTATTTTAG
1 TAATTTTACAAGTC-AAGGGTATTTCAA
** ***
37166723 TAATTTTACAAACCAAGGGTATTTTGG
1 TAATTTTACAAGTCAAGGGTATTTCAA
37166750 TAATTTTACAA
1 TAATTTTACAA
37166761 ACTAGGGGTA
Statistics
Matches: 167, Mismatches: 27, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
26 5 0.03
27 157 0.94
28 5 0.03
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAGTCAAGGGTATTTCAA
Found at i:37167653 original size:27 final size:27
Alignment explanation
Indices: 37166577--37167646 Score: 1852
Period size: 27 Copynumber: 39.6 Consensus size: 27
37166567 TATAGGTCAA
* **
37166577 GGGTATTTTAGTAATTTTACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
37166604 GGATATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
37166631 GGGTATTTTGATAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
37166658 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
37166685 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
37166712 AGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
37166739 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
37166766 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
37166793 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37166820 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37166847 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37166874 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37166901 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37166928 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37166955 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37166982 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37167009 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37167036 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37167063 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37167090 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37167117 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37167144 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37167171 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37167198 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37167225 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37167252 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37167279 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37167306 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37167333 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37167360 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37167387 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37167414 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37167441 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
37167468 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
37167495 GGGTATTTTAGTAACTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
37167522 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
**
37167549 GGGTATTTTGGTAATTTTACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
37167576 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
37167603 TGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
37167630 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
37167647 GGTAAACTAA
Statistics
Matches: 987, Mismatches: 56, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 987 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:37169604 original size:6 final size:6
Alignment explanation
Indices: 37169586--37169682 Score: 83
Period size: 6 Copynumber: 15.8 Consensus size: 6
37169576 AAGAAACATT
* *
37169586 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
37169635 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
37169683 GTAACCGAAT
Statistics
Matches: 74, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
5 4 0.05
6 62 0.84
7 6 0.08
8 2 0.03
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:37169631 original size:31 final size:31
Alignment explanation
Indices: 37169595--37169705 Score: 159
Period size: 31 Copynumber: 3.5 Consensus size: 31
37169585 TATCAGAACT
* * * *
37169595 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
37169626 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
37169657 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
37169688 CGAATCTAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
37169706 GTGAATGCAA
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
31 63 0.85
32 11 0.15
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:37169884 original size:27 final size:27
Alignment explanation
Indices: 37169842--37169916 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
37169832 GCTCAGTTAT
* * * *
37169842 CAGATATTGTGACAGAGTCACTAGATA
1 CAGATATTGTGGCAGAGCCACCAGAAA
37169869 CAGATATTGTGGCAGAGCCACCAGAAA
1 CAGATATTGTGGCAGAGCCACCAGAAA
* *
37169896 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
37169917 TTAACAGAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGAAA
Found at i:37170621 original size:27 final size:27
Alignment explanation
Indices: 37170565--37170731 Score: 137
Period size: 27 Copynumber: 6.2 Consensus size: 27
37170555 GGGCAAAATG
* * * *
37170565 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGAGGTATTTCA
*
37170591 GTAATTCCACCCTACAGAGGTATTTCA
1 GTAATTCTACCCTACAGAGGTATTTCA
* * *
37170618 GTAATTCTACCCTAAAGGGGTA-TTCTG
1 GTAATTCTACCCTACAGAGGTATTTC-A
* * * *
37170645 GTAATTCTACCTTATAGGGGTATTTGA
1 GTAATTCTACCCTACAGAGGTATTTCA
37170672 GTAATTCTACCCTACATG-GGTATTTCGA
1 GTAATTCTACCCTACA-GAGGTATTTC-A
* *
37170700 G-ATTTCTACCCTACA-AGGGTATTTCG
1 GTAATTCTACCCTACAGA-GGTATTTCA
37170726 GTAATT
1 GTAATT
37170732 TTGTAAATCG
Statistics
Matches: 114, Mismatches: 19, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
26 17 0.15
27 92 0.81
28 5 0.04
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGAGGTATTTCA
Found at i:37170649 original size:54 final size:55
Alignment explanation
Indices: 37170582--37170731 Score: 157
Period size: 54 Copynumber: 2.8 Consensus size: 55
37170572 TACCCCACAA
37170582 GGTA-TCTCGGTAATTCCACCCTACAGAGGTATTTCAGTAATTCTACCCTAAAGG
1 GGTATTCTCGGTAATTCCACCCTACAGAGGTATTTCAGTAATTCTACCCTAAAGG
* * * * * * *
37170636 GGTATTCT-GGTAATTCTACCTTATAGGGGTATTTGAGTAATTCTACCCTACATG
1 GGTATTCTCGGTAATTCCACCCTACAGAGGTATTTCAGTAATTCTACCCTAAAGG
* * *
37170690 GGTATT-TCGAG-ATTTCTACCCTACA-AGGGTATTTCGGTAATT
1 GGTATTCTCG-GTAATTCCACCCTACAGA-GGTATTTCAGTAATT
37170732 TTGTAAATCG
Statistics
Matches: 79, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
53 1 0.01
54 74 0.94
55 4 0.05
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.35
Consensus pattern (55 bp):
GGTATTCTCGGTAATTCCACCCTACAGAGGTATTTCAGTAATTCTACCCTAAAGG
Found at i:37170782 original size:27 final size:26
Alignment explanation
Indices: 37170713--37170785 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
37170703 TTCTACCCTA
*
37170713 CAAGGGTATTTCGGTAATTTTGTAAAT
1 CAAGGGTATTT-GGTAATTCTGTAAAT
* ***
37170740 CGAGGGTAAAACGGTAATTCTGTAAAT
1 CAAGGGT-ATTTGGTAATTCTGTAAAT
37170767 CAAGGGTACTTTGGTAATT
1 CAAGGGTA-TTTGGTAATT
37170786 TTACAAGTCG
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
26 1 0.03
27 33 0.94
28 1 0.03
ACGTcount: A:0.32, C:0.10, G:0.25, T:0.34
Consensus pattern (26 bp):
CAAGGGTATTTGGTAATTCTGTAAAT
Found at i:37170799 original size:27 final size:26
Alignment explanation
Indices: 37170767--37171186 Score: 392
Period size: 27 Copynumber: 15.6 Consensus size: 26
37170757 TTCTGTAAAT
* *
37170767 CAAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAA-A
* *** **
37170794 CGAGGGTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACA-AA
* ** * *
37170821 CGAGGGTATTTCAGTAATTTCATAAA
1 CAAGGGTATTTTGGTAATTTTACAAA
**
37170847 TTAGGGATATTTTGGTAATTTTACAAA
1 CAAGGG-TATTTTGGTAATTTTACAAA
* *
37170874 CTAGGGGTATTTTGATAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
37170901 CCAAGGGTATTTTGGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* *
37170928 CTAGGGGTATTTTGGTAATTTTATAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
* *
37170955 CAAAAGGTATTTTAGTAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
*
37170982 CCAGGGGTATTTTGGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* *
37171009 CCAGGGGTATTTTGGTAATTTTATAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* *
37171036 CAAAAGGTA-TTTAGTAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
* *
37171062 CCAGGGGTATTTTGGTAATTTTATAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
37171089 CCAAGGGTATTTTGGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* * *
37171116 CCAGGGGTATTTTGGTGATTTTATAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
*
37171143 CCAAGGGTATTTTAGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* *
37171170 CCAGGGGTTTTTTGGTA
1 -CAAGGGTATTTTGGTA
37171187 GTTTGGTAAA
Statistics
Matches: 330, Mismatches: 54, Indels: 18
0.82 0.13 0.04
Matches are distributed among these distances:
26 26 0.08
27 299 0.91
28 5 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (26 bp):
CAAGGGTATTTTGGTAATTTTACAAA
Found at i:37170908 original size:81 final size:81
Alignment explanation
Indices: 37170770--37171186 Score: 471
Period size: 81 Copynumber: 5.2 Consensus size: 81
37170760 TGTAAATCAA
* * * ** *** * **
37170770 GGGTACTTTGGTAATTTTACAAGTCGA-GGGTATTTCAATAATTTTACAGGTCGAGGGTATTTCA
1 GGGTATTTTGGTAATTTTACAA-ACAAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTG
* * *
37170834 GTAATTTCATAAATTAG
65 GTAATTTTACAAACTAG
* *
37170851 GGATATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACAAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGG
37170916 TAATTTTACAAACTAG
66 TAATTTTACAAACTAG
* ** *
37170932 GGGTATTTTGGTAATTTTATAAACAAAAGGTATTTT-AGTAATTTTACAAACCAGGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAACAAGGGGTATTTTGA-TAATTTTACAAACCAAGGGTATTTTG
*
37170996 GTAATTTTACAAACCAG
65 GTAATTTTACAAACTAG
* ** * *
37171013 GGGTATTTTGGTAATTTTATAAACAAAAGGTATTTAG-TAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACAAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGG
* * *
37171077 TAATTTTATAAACCAA
66 TAATTTTACAAACTAG
* * * * *
37171093 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAACAAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGG
*
37171158 TAATTTTACAAACCAG
66 TAATTTTACAAACTAG
*
37171174 GGGTTTTTTGGTA
1 GGGTATTTTGGTA
37171187 GTTTGGTAAA
Statistics
Matches: 295, Mismatches: 37, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
80 76 0.26
81 219 0.74
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACAAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGG
TAATTTTACAAACTAG
Found at i:37171197 original size:27 final size:27
Alignment explanation
Indices: 37170824--37171186 Score: 440
Period size: 27 Copynumber: 13.5 Consensus size: 27
37170814 TACAGGTCGA
** * **
37170824 GGGTATTTCAGTAATTTCATAAATTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
37170851 GGATATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
37170878 GGGTATTTTGATAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
37170905 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
37170932 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
37170959 AGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
*
37170986 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
37171013 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
37171040 AGGTA-TTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
*
37171066 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
*
37171093 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
37171120 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
37171147 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
*
37171174 GGGTTTTTTGGTA
1 GGGTATTTTGGTA
37171187 GTTTGGTAAA
Statistics
Matches: 289, Mismatches: 46, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
26 21 0.07
27 268 0.93
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAG
Found at i:37174366 original size:37 final size:37
Alignment explanation
Indices: 37174316--37174389 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
37174306 GATCGATGTC
*
37174316 GTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGATTT
1 GTTGTGATTAGCC--ATGAGATGTGGCTTATAATGATTT
37174353 GTTGT-ATGTAGCCATGAGATGTGGCTTATAATGATTT
1 GTTGTGAT-TAGCCATGAGATGTGGCTTATAATGATTT
37174390 TGGCTTGTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
35 3 0.09
36 4 0.12
37 26 0.79
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.42
Consensus pattern (37 bp):
GTTGTGATTAGCCATGAGATGTGGCTTATAATGATTT
Found at i:37181598 original size:76 final size:78
Alignment explanation
Indices: 37181518--37181668 Score: 189
Period size: 76 Copynumber: 2.0 Consensus size: 78
37181508 ATATGTTGGA
* ** * * * * *
37181518 ATTATATCCGGGTTAAATCCTGCAGGCTTCGTGTTGGTAATATATCCG-GGTTAAA-TCCTGTAG
1 ATTATATCCGAGTTAAATCCCACAGGCCTAGTGCTGGTAATACATCCGAGGTTAAAGTCCCGTAG
37181581 GCTTCGTGCTGGT
66 GCTTCGTGCTGGT
* * *
37181594 ATTATATCCGAGTTAAATCCCACAGGCCTAGTGCTGGTATTACATCTGAGTTTAAAGTCCCGTAG
1 ATTATATCCGAGTTAAATCCCACAGGCCTAGTGCTGGTAATACATCCGAGGTTAAAGTCCCGTAG
37181659 GCTTCGTGCT
66 GCTTCGTGCT
37181669 TGTGTTATGT
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
76 39 0.63
77 6 0.10
78 17 0.27
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.34
Consensus pattern (78 bp):
ATTATATCCGAGTTAAATCCCACAGGCCTAGTGCTGGTAATACATCCGAGGTTAAAGTCCCGTAG
GCTTCGTGCTGGT
Found at i:37181628 original size:38 final size:38
Alignment explanation
Indices: 37181518--37181668 Score: 167
Period size: 38 Copynumber: 3.9 Consensus size: 38
37181508 ATATGTTGGA
* * *
37181518 ATTATATCCGGGTTAAATCCTGCAGGCTTCGTGTTGGT
1 ATTATATCCGAGTTAAATCCCGCAGGCTTCGTGCTGGT
* * * *
37181556 AATATATCCGGGTTAAATCCTGTAGGCTTCGTGCTGGT
1 ATTATATCCGAGTTAAATCCCGCAGGCTTCGTGCTGGT
* * *
37181594 ATTATATCCGAGTTAAATCCCACAGGCCTAGTGCTGGT
1 ATTATATCCGAGTTAAATCCCGCAGGCTTCGTGCTGGT
* * *
37181632 ATTACATCTGAGTTTAAAGTCCCGTAGGCTTCGTGCT
1 ATTATATCCGAG-TTAAA-TCCCGCAGGCTTCGTGCT
37181669 TGTGTTATGT
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
38 76 0.80
39 5 0.05
40 14 0.15
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.34
Consensus pattern (38 bp):
ATTATATCCGAGTTAAATCCCGCAGGCTTCGTGCTGGT
Found at i:37183290 original size:43 final size:43
Alignment explanation
Indices: 37183242--37183451 Score: 312
Period size: 43 Copynumber: 4.9 Consensus size: 43
37183232 GCATGAAACT
*
37183242 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* * * * *
37183285 CGGTGATGAGTATTCGAGCCTTTGTGCCTAGTAGGCTTCATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
37183328 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGT
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
37183371 CGGTGATGTGTATTCGGGCCTTCATGCCTAGCAGGCTCCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
** *
37183414 CAATGATGTGTATTCGGGTCTTCGTGCCTAGCAGGCTT
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTT
37183452 AATGTTGGTG
Statistics
Matches: 149, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 149 1.00
ACGTcount: A:0.12, C:0.23, G:0.32, T:0.32
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:37187919 original size:38 final size:38
Alignment explanation
Indices: 37187858--37188046 Score: 229
Period size: 38 Copynumber: 4.9 Consensus size: 38
37187848 ATTTGATGTG
* *
37187858 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCGTGCTGGAATTA
37187898 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
*
37187936 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * *
37187974 TATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * *
37188012 TATCTGAGTTTAAAGTCCCGTAGGCTTCGTGCTGG
1 TATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTGG
37188047 TGTTATGTTT
Statistics
Matches: 134, Mismatches: 10, Indels: 10
0.87 0.06 0.06
Matches are distributed among these distances:
37 2 0.01
38 94 0.70
39 13 0.10
40 25 0.19
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
Found at i:37192760 original size:28 final size:28
Alignment explanation
Indices: 37192718--37192775 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 28
37192708 CACACAGGCT
37192718 AGGACACGGGCGTGT-CATGGCCGTGTGA
1 AGGACACGGGCGTGTCCA-GGCCGTGTGA
*
37192746 AGGACACGGGTGTGTGCCAGGCCGTGTGA
1 AGGACACGGGCGTGT-CCAGGCCGTGTGA
37192775 A
1 A
37192776 AACCCTTGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 14 0.52
29 11 0.41
30 2 0.07
ACGTcount: A:0.19, C:0.21, G:0.43, T:0.17
Consensus pattern (28 bp):
AGGACACGGGCGTGTCCAGGCCGTGTGA
Found at i:37199958 original size:21 final size:23
Alignment explanation
Indices: 37199911--37199956 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
37199901 TACCAATCAA
*
37199911 TTCACAACATATAGCATACATTT
1 TTCACAACATAAAGCATACATTT
*
37199934 TTCA-AACATAAAGCATTCATTT
1 TTCACAACATAAAGCATACATTT
37199956 T
1 T
37199957 CATAAATCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.39, C:0.20, G:0.04, T:0.37
Consensus pattern (23 bp):
TTCACAACATAAAGCATACATTT
Found at i:37202673 original size:267 final size:268
Alignment explanation
Indices: 37202191--37202731 Score: 958
Period size: 267 Copynumber: 2.0 Consensus size: 268
37202181 CAAAAACATG
*
37202191 CCAAAACAATATCAATCTATATAATTCATTTATCATAATTCACACTCACATAACTTTCTTATAAA
1 CCAAAACAATATCAATCTATATAATTCATTTATCATAATTCACACTCACATAACTTCCTTATAAA
* * *
37202256 CAACCACACAACATCTAAAATCATACCTCATCAAGGCATTTCTCAATCATTTTATACTCCATATA
66 CAACCACACAACATCTAAAATCATACCTCATCAAGGCATTTCTCAAGCATTTTATACTCCACAAA
**
37202321 TCAATTAACCATTTGAGTGACTATAAAACCATAACCACATCCATGCCAAACACACCAAAATAAAC
131 TCAATTAACCATTTGAGCAACTATAAAACCATAACCACATCCATGCCAAACACACCAAAATAAAC
* *
37202386 CATCACTCATGGCTATATATACAAACCAAAACATATACAATTTACAAGTCAAATCTCATGGCTAT
196 CATCACTCAAGGCTATATATACAAACCAAAACATATACAATTTACAAGCCAAATCTCATGGCTAT
37202451 AATCACAA
261 AATCACAA
37202459 CCAAAA-AATATCAATCTATATAATTCATTTATCATAATTCACACTCACATAACTTCCTTATAAA
1 CCAAAACAATATCAATCTATATAATTCATTTATCATAATTCACACTCACATAACTTCCTTATAAA
37202523 CAACCACACAACATCTAAAATCATACCTCATCAAGGCATTTCTCAAGCATTTTATACTCCACAAA
66 CAACCACACAACATCTAAAATCATACCTCATCAAGGCATTTCTCAAGCATTTTATACTCCACAAA
* * *
37202588 TCAATTAACCATTTGAGCAACTATAAAACCATAACCACATTCATGTCAAACATACCAAAATAAAC
131 TCAATTAACCATTTGAGCAACTATAAAACCATAACCACATCCATGCCAAACACACCAAAATAAAC
* *
37202653 CATCACTCAAGGGTATATATACAAACCAAAACATATACAATTTGCAAGCCAAATCTCATGGCTAT
196 CATCACTCAAGGCTATATATACAAACCAAAACATATACAATTTACAAGCCAAATCTCATGGCTAT
37202718 AATCACAA
261 AATCACAA
37202726 CCAAAA
1 CCAAAA
37202732 TACCACATCT
Statistics
Matches: 260, Mismatches: 13, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
267 254 0.98
268 6 0.02
ACGTcount: A:0.44, C:0.25, G:0.04, T:0.27
Consensus pattern (268 bp):
CCAAAACAATATCAATCTATATAATTCATTTATCATAATTCACACTCACATAACTTCCTTATAAA
CAACCACACAACATCTAAAATCATACCTCATCAAGGCATTTCTCAAGCATTTTATACTCCACAAA
TCAATTAACCATTTGAGCAACTATAAAACCATAACCACATCCATGCCAAACACACCAAAATAAAC
CATCACTCAAGGCTATATATACAAACCAAAACATATACAATTTACAAGCCAAATCTCATGGCTAT
AATCACAA
Found at i:37202967 original size:142 final size:142
Alignment explanation
Indices: 37202781--37203063 Score: 503
Period size: 142 Copynumber: 2.0 Consensus size: 142
37202771 ATAATCCAAA
37202781 AGTACCAACTTAGATGTTTGATAGTGTGATGATGTTCCCGATGACTCCCGGATCCGAACTAGCCT
1 AGTACCAACTTAGATGTTTGATAGTGTGATGATGTTCCCGATGACTCCCGGATCCGAACTAGCCT
* * *
37202846 TGATTCACTATAAAATATAGAAAAATAACACAAAGTAAGCTTAATAACTTAGTAAGCTCGTATGA
66 TAATTCACTATAAAACATAGAAAAATAACACAAAGTAAGCTTAATAACTTAGGAAGCTCGTATGA
37202911 TATAAACTTAAC
131 TATAAACTTAAC
* *
37202923 AGTACCAACTTAGATGTTTGATAGTGTGATGATGTTCCCGATGACTCCTGGATCTGAACTAGCCT
1 AGTACCAACTTAGATGTTTGATAGTGTGATGATGTTCCCGATGACTCCCGGATCCGAACTAGCCT
* *
37202988 TAATTCACTATAAAACATAGAAAAATAACACAAAGTAAGCTTAATAGCTTAGGAATCTCGTATGA
66 TAATTCACTATAAAACATAGAAAAATAACACAAAGTAAGCTTAATAACTTAGGAAGCTCGTATGA
37203053 TATAAACTTAA
131 TATAAACTTAA
37203064 ATAATCACAA
Statistics
Matches: 134, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
142 134 1.00
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.29
Consensus pattern (142 bp):
AGTACCAACTTAGATGTTTGATAGTGTGATGATGTTCCCGATGACTCCCGGATCCGAACTAGCCT
TAATTCACTATAAAACATAGAAAAATAACACAAAGTAAGCTTAATAACTTAGGAAGCTCGTATGA
TATAAACTTAAC
Found at i:37203297 original size:28 final size:28
Alignment explanation
Indices: 37203256--37203310 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
37203246 ATGCCATTGA
* *
37203256 ATACTCAATGTCTCGTACACTAAGTGCT
1 ATACTCAATATCTCGCACACTAAGTGCT
*
37203284 ATACTCAATATCTCGCACACTAGGTGC
1 ATACTCAATATCTCGCACACTAAGTGC
37203311 CGTACATCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (28 bp):
ATACTCAATATCTCGCACACTAAGTGCT
Found at i:37207888 original size:34 final size:34
Alignment explanation
Indices: 37207844--37207923 Score: 124
Period size: 34 Copynumber: 2.4 Consensus size: 34
37207834 CTATGTTAAT
* *
37207844 GGGCTTAGGCCCAGACTGCTACTATTACTGAAAC
1 GGGCTAAGGCCCAGACTGCTACTATTACTAAAAC
* *
37207878 GGGCTCAGGCCCAGACTGCTACTATTACTAAAAT
1 GGGCTAAGGCCCAGACTGCTACTATTACTAAAAC
37207912 GGGCTAAGGCCC
1 GGGCTAAGGCCC
37207924 TAACTATTAC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 42 1.00
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (34 bp):
GGGCTAAGGCCCAGACTGCTACTATTACTAAAAC
Found at i:37214954 original size:61 final size:61
Alignment explanation
Indices: 37214888--37215009 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
37214878 TCAACTCAGC
37214888 CAAAGGCCGGTAGCTCGTTTATCAACTGAGCGAATACTTATTTGTAAGGGCTCAACTAAAT
1 CAAAGGCCGGTAGCTCGTTTATCAACTGAGCGAATACTTATTTGTAAGGGCTCAACTAAAT
37214949 CAAAGGCCGGTAGCTCGTTTATCAACTGAGCGAATACTTATTTGTAAGGGCTCAACTAAAT
1 CAAAGGCCGGTAGCTCGTTTATCAACTGAGCGAATACTTATTTGTAAGGGCTCAACTAAAT
37215010 TCAAGCACAT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (61 bp):
CAAAGGCCGGTAGCTCGTTTATCAACTGAGCGAATACTTATTTGTAAGGGCTCAACTAAAT
Found at i:37215252 original size:39 final size:39
Alignment explanation
Indices: 37215135--37215396 Score: 320
Period size: 39 Copynumber: 6.6 Consensus size: 39
37215125 GCTCCTCGTT
* *
37215135 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
37215175 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
37215215 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
37215254 CAAATGCCTTCGGGCTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
37215293 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
37215332 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
37215373 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
37215397 CATCATTCAA
Statistics
Matches: 202, Mismatches: 13, Indels: 15
0.88 0.06 0.07
Matches are distributed among these distances:
39 130 0.64
40 61 0.30
41 11 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:37215384 original size:117 final size:119
Alignment explanation
Indices: 37215135--37215393 Score: 327
Period size: 118 Copynumber: 2.2 Consensus size: 119
37215125 GCTCCTCGTT
* **
37215135 CAAATGCCTTCGGGACATAGCCC-GGTTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCAGAAT-TAGT-ATCTCGCACAAATGCCTTCGGGACTTAACCC
* *
37215198 GGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
64 GGAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAGCA
*
37215254 CAAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCAGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
37215317 AATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
66 AATTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TAGCA
37215373 C-AA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
37215394 GGACATCATT
Statistics
Matches: 124, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
117 46 0.37
118 53 0.43
119 25 0.20
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAGCCCAGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTAGCA
Found at i:37216754 original size:204 final size:201
Alignment explanation
Indices: 37216404--37216807 Score: 781
Period size: 204 Copynumber: 2.0 Consensus size: 201
37216394 TGCATGGCCG
37216404 AACCTCTTCAACCTTTCTTCTTCCTTCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGATG
1 AACCTCTTCAACCTTTCTTCTTCCTTCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGATG
37216469 AGCATTTTTTTTCTTTGTTTTTTTCTTTCTAGTTTCGGCTAAATGAAGATGAGAAAGGATGAACA
66 AGCATTTTTTTTCTTTGTTTTTTTCTTTCTAGTTTCGGCTAAATGAAGATGAGAAAGGATGAACA
37216534 AAAATTTTCTCCTTTCTTTTCTTTAGCTCACGGCAATGGGGGGGGGGGGAAACAACTACACACAT
131 AAAATTTTCTCCTTTCTTTTCTTTAGCTCACGGCAAT---GGGGGGGGGAAACAACTACACACAT
37216599 TTTTTTTTT
193 TTTTTTTTT
37216608 AACCTCTTCAACCTTTCTTCTTCCTTCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGATG
1 AACCTCTTCAACCTTTCTTCTTCCTTCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGATG
37216673 AGCATTTTTTTTCTTTGTTTTTTTCTTTCTAGTTTCGGCTAAATGAAGATGAGAAAGGATGAACA
66 AGCATTTTTTTTCTTTGTTTTTTTCTTTCTAGTTTCGGCTAAATGAAGATGAGAAAGGATGAACA
37216738 AAAATTTTCTCCTTTCTTTTCTTTAGCTCACGGCAATGGGGGGGGGAAACAACTACACACATTTT
131 AAAATTTTCTCCTTTCTTTTCTTTAGCTCACGGCAATGGGGGGGGGAAACAACTACACACATTTT
37216803 TTTTT
196 TTTTT
37216808 GTATTCATCA
Statistics
Matches: 200, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
201 33 0.17
204 167 0.83
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (201 bp):
AACCTCTTCAACCTTTCTTCTTCCTTCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGATG
AGCATTTTTTTTCTTTGTTTTTTTCTTTCTAGTTTCGGCTAAATGAAGATGAGAAAGGATGAACA
AAAATTTTCTCCTTTCTTTTCTTTAGCTCACGGCAATGGGGGGGGGAAACAACTACACACATTTT
TTTTTT
Found at i:37223932 original size:46 final size:45
Alignment explanation
Indices: 37223876--37224144 Score: 213
Period size: 46 Copynumber: 5.8 Consensus size: 45
37223866 TATTTGGGCA
37223876 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
37223922 TCGGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * * *
37223969 TCCTAGCTCGTTGAGTTGAGTCTGAGTTCACTTCTGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
37224015 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
37224062 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA-AG
* * * *
37224108 CCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37224145 GCGGGTTACA
Statistics
Matches: 172, Mismatches: 37, Indels: 28
0.73 0.16 0.12
Matches are distributed among these distances:
43 2 0.01
44 5 0.03
45 2 0.01
46 94 0.55
47 59 0.34
48 2 0.01
49 6 0.03
50 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:37223997 original size:47 final size:47
Alignment explanation
Indices: 37223928--37224090 Score: 181
Period size: 47 Copynumber: 3.5 Consensus size: 47
37223918 AATGTCGGAA
37223928 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCTAG
1 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCTAG
* **** * * * *
37223975 CTCGTTGAGTTGAGTCTGAGTTC-ACTTCTG-GA-T-GCGAATGTCTGAA
1 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCAT-CCT-AG
*
37224021 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCTAG
37224068 CTCGTTGAGTTGAGTCCGAGTTC
1 CTCGTTGAGTTGAGTCCGAGTTC
37224091 ACTTATGGAT
Statistics
Matches: 90, Mismatches: 19, Indels: 14
0.73 0.15 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 3 0.03
46 26 0.29
47 49 0.54
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCTAG
Found at i:37224031 original size:93 final size:93
Alignment explanation
Indices: 37223872--37224136 Score: 422
Period size: 93 Copynumber: 2.8 Consensus size: 93
37223862 AGGATATTTG
* *
37223872 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
37223937 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
37223965 GGCATCCTAGCTCGTTGAGTTGAGTCTGAGTTCACTTCTGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
37224030 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
** * * *
37224058 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGCCCGAGCTCATTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
*
37224123 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
37224137 ACTTATGGGC
Statistics
Matches: 157, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 157 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:37226487 original size:13 final size:13
Alignment explanation
Indices: 37226469--37226496 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
37226459 ACTGTCCTAG
37226469 TTAGAGAAGAAAA
1 TTAGAGAAGAAAA
37226482 TTAGAGAAGAAAA
1 TTAGAGAAGAAAA
37226495 TT
1 TT
37226497 CTCTTTGGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.21, T:0.21
Consensus pattern (13 bp):
TTAGAGAAGAAAA
Found at i:37230174 original size:39 final size:40
Alignment explanation
Indices: 37230060--37230244 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
37230050 GCTACTCATT
*
37230060 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
37230100 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
37230140 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
37230179 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
* *
37230220 CAAA-GCGTTCGGGACTTACCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37230245 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 77 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:37230231 original size:79 final size:80
Alignment explanation
Indices: 37230060--37230244 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 80
37230050 GCTACTCATT
* * *
37230060 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTACCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
37230124 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* * **
37230141 CAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTACCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
37230204 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
*
37230220 CAAAGCGTTCGGGACTTACCCCGGA
1 CAAAGCCTTCGGGACTTACCCCGGA
37230245 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.66
80 24 0.27
81 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTACCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:37232935 original size:46 final size:46
Alignment explanation
Indices: 37232882--37233147 Score: 226
Period size: 46 Copynumber: 5.7 Consensus size: 46
37232872 TTGGGCATCC
37232882 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCT
* * * *
37232928 GAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGTAACTAGGCAT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAAAT-GTC-T
* * *
37232973 CCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 -GAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCT
* * * *
37233021 AAACTCGTTAAGTTGAGTCCGA-TT---TTGA-GAGATGTAACTAGGCATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTT-ATG-GATGCAA--ATG--TCT
* * * *
37233068 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCT
*
37233114 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37233148 GCAGGTTACA
Statistics
Matches: 175, Mismatches: 25, Indels: 40
0.73 0.10 0.17
Matches are distributed among these distances:
42 4 0.02
43 14 0.08
44 3 0.02
45 5 0.03
46 80 0.46
47 45 0.26
48 4 0.02
49 3 0.02
50 13 0.07
51 4 0.02
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCT
Found at i:37232987 original size:93 final size:93
Alignment explanation
Indices: 37232875--37233139 Score: 424
Period size: 93 Copynumber: 2.8 Consensus size: 93
37232865 TAGGATATTG
* *
37232875 GGCATCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGA
1 GGCATCC-AAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGA
37232939 GTTGAGTCCGAGTTCGAGAGATGTAACTA
65 GTTGAGTCCGAGTTCGAGAGATGTAACTA
* *
37232968 GGCATCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTAAG
1 GGCATCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
* *
37233033 TTGAGTCCGATTTTGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
** * *
37233061 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
37233126 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
37233140 ACTTATGGGC
Statistics
Matches: 157, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
92 2 0.01
93 155 0.99
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:37233000 original size:47 final size:47
Alignment explanation
Indices: 37232931--37233093 Score: 172
Period size: 47 Copynumber: 3.5 Consensus size: 47
37232921 AATGTCTGAA
37232931 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCAAG
1 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCAAG
*** * * *
37232978 CTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATGTCCAAA
1 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--TCCAAG
* * * **
37233024 CTCGTTAAGTTGAGTCCGATTTTGAGAGATGTAACTAGGCATCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCAAG
37233071 CTCGTTGAGTTGAGTCCGAGTTC
1 CTCGTTGAGTTGAGTCCGAGTTC
37233094 ACTTATGGAT
Statistics
Matches: 89, Mismatches: 20, Indels: 14
0.72 0.16 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 29 0.33
47 50 0.56
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCAAG
Found at i:37236127 original size:28 final size:28
Alignment explanation
Indices: 37236086--37236139 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
37236076 ATGCCGTTGA
*
37236086 ATACTCAATGTCTCACACACTAAGTGCC
1 ATACTCAATATCTCACACACTAAGTGCC
37236114 ATACTCAATATCTCACACACTAAGTG
1 ATACTCAATATCTCACACACTAAGTG
37236140 ACTTACATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.35, C:0.30, G:0.09, T:0.26
Consensus pattern (28 bp):
ATACTCAATATCTCACACACTAAGTGCC
Found at i:37245005 original size:28 final size:28
Alignment explanation
Indices: 37244972--37245050 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
37244962 GAATCATTCG
*
37244972 ATATTTCGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
37245000 ATATTTCGCACACTAAGTGCCATTCTTA
1 ATATTTCGCACACTAAGTGCCATTCTCA
** *
37245028 ATATTTCATACACTGAGTGCCAT
1 ATATTTCGCACACTAAGTGCCAT
37245051 ATTTGATTGC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:37248780 original size:39 final size:39
Alignment explanation
Indices: 37248725--37248868 Score: 252
Period size: 39 Copynumber: 3.7 Consensus size: 39
37248715 CCAACATAAT
* *
37248725 TGCCTTCGGGACTTAGCCCAGATATAACACCAGCATGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
* *
37248764 TGCCTTCGGGATTTAGCCCGGTTATAACACCAGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
37248803 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
37248842 TGCCTTCGGGACTTAGCCCGGATATAA
1 TGCCTTCGGGACTTAGCCCGGATATAA
37248869 ATCTCACACA
Statistics
Matches: 99, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 99 1.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (39 bp):
TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
Found at i:37262067 original size:27 final size:27
Alignment explanation
Indices: 37262037--37262098 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
37262027 ACCCTCGGTT
*
37262037 TGTAAAATTACCAAAATACCCTTGTAG
1 TGTAAAATTACCAAAATACCCCTGTAG
*
37262064 TGTAAAATTACCGAAATACCCCTGTAG
1 TGTAAAATTACCAAAATACCCCTGTAG
*
37262091 GGTAAAAT
1 TGTAAAAT
37262099 AACTGTGTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACCCCTGTAG
Found at i:37266178 original size:46 final size:45
Alignment explanation
Indices: 37266032--37266243 Score: 173
Period size: 46 Copynumber: 4.6 Consensus size: 45
37266022 TGTGAGCTAC
* * *
37266032 TGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTA-TGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GAGT-A-AGGCAG
* * *
37266078 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA-TGAGTGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGAGTAAG-GC-AG
* * *
37266126 AGTAAGACATGTCTGGGATATGCATCAGCCTCGAGACGTAAGGCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA-GTAAGGCAG
* **
37266172 TGTAAGACATGTCTGGGACATGCATCGG-CTACGAGA-TATGTTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGAGTAAGGCAG
*
37266216 TGTAAAACCATGTCTGGGACATGGCATC
1 TGTAAGA-CATGTCTGGGACAT-GCATC
37266244 AGCACAAACA
Statistics
Matches: 137, Mismatches: 19, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
44 11 0.08
45 16 0.12
46 58 0.42
47 30 0.22
48 21 0.15
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (45 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAGTAAGGCAG
Found at i:37266243 original size:92 final size:94
Alignment explanation
Indices: 37266075--37266297 Score: 237
Period size: 92 Copynumber: 2.4 Consensus size: 94
37266065 TTATGAGAGC
* *
37266075 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGTGCTAGAGTAAGACATGTCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGTGCTAGAGTAAAACATGTCT
*
37266140 GGGATATGCATCAGCCTCGAGACGTAAGG
66 GGGACATGCATCAGCCTCGAGACGTAAGG
* *
37266169 CAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TACGAGAT-A-TGTTAGTGTAAAACCATGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-CGAGATGAGTGCTAGAGTAAAA-CATGT
* *
37266229 CTGGGACATGGCATCAG-CAC-AAACATGCT-AGAG
64 CTGGGACAT-GCATCAGCCTCGAGAC--G-TAAG-G
* *
37266262 CTTGTGTAAGACCATGTCTGGGATATGGCATCGGCA
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
37266298 CCTTACCCCA
Statistics
Matches: 109, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
90 13 0.12
91 17 0.16
92 23 0.21
93 17 0.16
94 18 0.17
95 13 0.12
96 8 0.07
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (94 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGTGCTAGAGTAAAACATGTCT
GGGACATGCATCAGCCTCGAGACGTAAGG
Found at i:37269750 original size:19 final size:19
Alignment explanation
Indices: 37269714--37269749 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
37269704 TTATTTTTGA
37269714 AATAATATAAAATATTTTC
1 AATAATATAAAATATTTTC
37269733 AATAA-ATAAAATATTTT
1 AATAATATAAAATATTTT
37269750 TGTGATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (19 bp):
AATAATATAAAATATTTTC
Found at i:37270299 original size:18 final size:17
Alignment explanation
Indices: 37270264--37270296 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
37270254 TATTTTTGTA
37270264 AAACAATATTTATAAAC
1 AAACAATATTTATAAAC
37270281 AAACATATATTT-TAAA
1 AAACA-ATATTTATAAA
37270297 ACATTTTAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (17 bp):
AAACAATATTTATAAAC
Found at i:37272333 original size:27 final size:27
Alignment explanation
Indices: 37272303--37273371 Score: 1103
Period size: 27 Copynumber: 39.9 Consensus size: 27
37272293 GTACTCTCGA
37272303 TTTACAGAATTACCGTTTTACCCTCAG
1 TTTACAGAATTACCGTTTTACCCTCAG
*
37272330 TTTACAGAATTACCGTTTTACCCT-TG
1 TTTACAGAATTACCGTTTTACCCTCAG
37272356 ATTTACAGAATTACCGTTTTACCCTCAG
1 -TTTACAGAATTACCGTTTTACCCTCAG
*
37272384 TTTACAGAATTACCGTTTTACCCT-TG
1 TTTACAGAATTACCGTTTTACCCTCAG
37272410 ATTTACAGAATTACCGTTTTACCCTCAG
1 -TTTACAGAATTACCGTTTTACCCTCAG
*
37272438 TTTACAGAATTACCGTTTTACCCT-TG
1 TTTACAGAATTACCGTTTTACCCTCAG
37272464 ATTTACAGAATTACCGTTTTACCCTCAG
1 -TTTACAGAATTACCGTTTTACCCTCAG
** *
37272492 TTTACAGAATTACTATTTTACCCTCAA
1 TTTACAGAATTACCGTTTTACCCTCAG
* *
37272519 TTTATAGAATTACCGTTTTACCCTCGAT
1 TTTACAGAATTACCGTTTTACCCTC-AG
*
37272547 TTGTA-A-AATTA-CGTTTTACCCT-TG
1 TT-TACAGAATTACCGTTTTACCCTCAG
*
37272571 ATTTACAGAATTACCGTTTTACCCTCGAT
1 -TTTACAGAATTACCGTTTTACCCTC-AG
*
37272600 TTGTA-A-AATTA-CGTTTTACCCT-TG
1 TT-TACAGAATTACCGTTTTACCCTCAG
*
37272624 ATTTACAGAATTACCGTTTTACCCTCGAT
1 -TTTACAGAATTACCGTTTTACCCTC-AG
*
37272653 TTGTA-A-AATTA-CGTTTTACCCT-TG
1 TT-TACAGAATTACCGTTTTACCCTCAG
*
37272677 ATTTACAGAATTACCGTTTTACCCTCGAT
1 -TTTACAGAATTACCGTTTTACCCTC-AG
*
37272706 TTGTA-A-AATTA-CGTTTTACCCT-TG
1 TT-TACAGAATTACCGTTTTACCCTCAG
*
37272730 ATTTACAGAATTACCGTTTTACCCTCGAT
1 -TTTACAGAATTACCGTTTTACCCTC-AG
*
37272759 TTGTA-A-AATTA-CGTTTTACCCT-TG
1 TT-TACAGAATTACCGTTTTACCCTCAG
*
37272783 ATTTACAGAATTACCGTTTTACCCTCGAT
1 -TTTACAGAATTACCGTTTTACCCTC-AG
*
37272812 TTGTA-A-AATTA-CGTTTTACCCT-TG
1 TT-TACAGAATTACCGTTTTACCCTCAG
*
37272836 ATTTACAGAATTACCGTTTTACCCTCGAT
1 -TTTACAGAATTACCGTTTTACCCTC-AG
*
37272865 TTGTA-A-AATTA-CGTTTTACCCT-TG
1 TT-TACAGAATTACCGTTTTACCCTCAG
37272889 ATTTACAGAATTACCGTTTTACCCTCAG
1 -TTTACAGAATTACCGTTTTACCCTCAG
*
37272917 TTTACAGAATTACTGTTTTACCCTC-G
1 TTTACAGAATTACCGTTTTACCCTCAG
* *
37272943 ATTTATAGAATTACTGTTTTACCCTC-G
1 -TTTACAGAATTACCGTTTTACCCTCAG
*
37272970 ATTT-CTAAAATTACCGTTTTACCCTCAG
1 -TTTAC-AGAATTACCGTTTTACCCTCAG
*
37272998 TTTACAGAATTACCGTTTTACCCT-TG
1 TTTACAGAATTACCGTTTTACCCTCAG
37273024 ATTTACAGAATTACCGTTTTACCCTCAG
1 -TTTACAGAATTACCGTTTTACCCTCAG
** *
37273052 TTTACAGAATTACTATTTTACCCTCAA
1 TTTACAGAATTACCGTTTTACCCTCAG
* *
37273079 TTTATAGAATTACCGTTTTACCCTCGAT
1 TTTACAGAATTACCGTTTTACCCTC-AG
*
37273107 TTGTA-A-AATTACCGTTTTACCCTCAA
1 TT-TACAGAATTACCGTTTTACCCTCAG
* *
37273133 TTTATAGAATTACTGTTTTACCCTCAG
1 TTTACAGAATTACCGTTTTACCCTCAG
* **
37273160 GTTACAGAATTACTATTTTACCCTC-G
1 TTTACAGAATTACCGTTTTACCCTCAG
37273186 ATTTACAGAATTACCGTTTTACCCTCAG
1 -TTTACAGAATTACCGTTTTACCCTCAG
*
37273214 TTTACAGAATTACTGTTTTACCCTC-G
1 TTTACAGAATTACCGTTTTACCCTCAG
*
37273240 ATTTACAGAATTACCGTTTTACCCTCGAT
1 -TTTACAGAATTACCGTTTTACCCTC-AG
*
37273269 TTGTA-A-AATTA-CGTTTTACCCT-TG
1 TT-TACAGAATTACCGTTTTACCCTCAG
*
37273293 ATTTACAGAATTACTAG-TTTACCCTCAG
1 -TTTACAGAATTAC-CGTTTTACCCTCAG
* *
37273321 TTTACAAAATTATCGTTTTACCCTC-G
1 TTTACAGAATTACCGTTTTACCCTCAG
37273347 ATTTACAGAATTACCGTTTTACCCT
1 -TTTACAGAATTACCGTTTTACCCT
37273372 TAATTGTGAA
Statistics
Matches: 887, Mismatches: 76, Indels: 158
0.79 0.07 0.14
Matches are distributed among these distances:
24 16 0.02
25 26 0.03
26 141 0.16
27 647 0.73
28 39 0.04
29 18 0.02
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
TTTACAGAATTACCGTTTTACCCTCAG
Found at i:37272587 original size:53 final size:53
Alignment explanation
Indices: 37272301--37273372 Score: 1286
Period size: 54 Copynumber: 20.0 Consensus size: 53
37272291 AAGTACTCTC
* *
37272301 GATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACCGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTCGA-TTTATAAAATTA-CGTTTTACCCTT
* *
37272355 GATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACCGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTCGA-TTTATAAAATTA-CGTTTTACCCTT
* *
37272409 GATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACCGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTCGA-TTTATAAAATTA-CGTTTTACCCTT
* * * *
37272463 GATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTCGA-TTTATAAAATTAC-GTTTTACCCTT
* * *
37272517 AATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACGTTTTACCCTT
*
37272570 GATTTACAGAATTACCGTTTTACCCTCGATTTGTAAAATTACGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACGTTTTACCCTT
*
37272623 GATTTACAGAATTACCGTTTTACCCTCGATTTGTAAAATTACGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACGTTTTACCCTT
*
37272676 GATTTACAGAATTACCGTTTTACCCTCGATTTGTAAAATTACGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACGTTTTACCCTT
*
37272729 GATTTACAGAATTACCGTTTTACCCTCGATTTGTAAAATTACGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACGTTTTACCCTT
*
37272782 GATTTACAGAATTACCGTTTTACCCTCGATTTGTAAAATTACGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACGTTTTACCCTT
*
37272835 GATTTACAGAATTACCGTTTTACCCTCGATTTGTAAAATTACGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACGTTTTACCCTT
* * *
37272888 GATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTCGA-TTTATAAAATTAC-GTTTTACCCTT
* * *
37272942 GATTTATAGAATTACTGTTTTACCCTCGATTTCTAAAATTACCGTTTTACCC-T
1 GATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTA-CGTTTTACCCTT
* * * *
37272995 CAGTTTACAGAATTACCGTTTTACCCTTGATTTACAGAATTACCGTTTTACCC-T
1 GA-TTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTA-CGTTTTACCCTT
* ** * * *
37273049 CAGTTTACAGAATTACTATTTTACCCTCAATTTATAGAATTACCGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTA-CGTTTTACCCTT
** * * *
37273104 GATTTGTAAAATTACCGTTTTACCCTCAATTTATAGAATTACTGTTTTACCC-T
1 GATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTAC-GTTTTACCCTT
* * ** * *
37273157 CAGGTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCC-T
1 GA-TTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTA-CGTTTTACCCTT
* * * * *
37273211 CAGTTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTA-CGTTTTACCCTT
** * * * *
37273266 GATTTGTAAAATTA-CGTTTTACCCTTGATTTACAGAATTAC-TAGTTTACCC-T
1 GATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACGT--TTTACCCTT
* * * * *
37273318 CAGTTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTT
1 GA-TTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTA-CGTTTTACCCTT
37273373 AATTGTGAAA
Statistics
Matches: 935, Mismatches: 64, Indels: 37
0.90 0.06 0.04
Matches are distributed among these distances:
51 1 0.00
52 3 0.00
53 407 0.44
54 515 0.55
55 8 0.01
56 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.40
Consensus pattern (53 bp):
GATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACGTTTTACCCTT
Found at i:37273486 original size:81 final size:81
Alignment explanation
Indices: 37273389--37273574 Score: 257
Period size: 81 Copynumber: 2.3 Consensus size: 81
37273379 GAAATTACTG
* * *
37273389 AAATACCCCTATAGGGTAGAATT-TCTGAAATACCCTTATAGGGTAGAATTACTGAAATACCCTT
1 AAATACCCCTGTAGGGTAGAATTATC-GAAATACCCTTATAGGGTAGAAATACTGAAATACCCCT
37273453 ATAGGATAGAATTACCA
65 ATAGGATAGAATTACCA
* *
37273470 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTATAGGGTAGAAATACTGAAATACCCCTA
* *
37273535 TAGGGTAGAATTACCG
66 TAGGATAGAATTACCA
* * * *
37273551 AGATACCCTTGTGGGGTAAAATTA
1 AAATACCCCTGTAGGGTAGAATTA
37273575 CCATTTTTCC
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 91 0.98
82 2 0.02
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTATAGGGTAGAAATACTGAAATACCCCTA
TAGGATAGAATTACCA
Found at i:37273567 original size:27 final size:27
Alignment explanation
Indices: 37273381--37273576 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
37273371 TTAATTGTGA
* * *
37273381 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
37273408 AATTTCTGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
37273435 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
37273462 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
37273489 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
37273516 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
37273543 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
37273570 AATTACC
1 AATTACC
37273577 ATTTTTCCCC
Statistics
Matches: 147, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 147 1.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:37274490 original size:27 final size:27
Alignment explanation
Indices: 37274452--37274504 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
37274442 TCACATATGA
*
37274452 GAAATTCTACCCTATAGGGGTATTTCG
1 GAAATTCTACCCTACAGGGGTATTTCG
37274479 GAAATTCTACCCTACAGGGGTATTTC
1 GAAATTCTACCCTACAGGGGTATTTC
37274505 AGTAATTTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (27 bp):
GAAATTCTACCCTACAGGGGTATTTCG
Found at i:37274511 original size:27 final size:27
Alignment explanation
Indices: 37274451--37274511 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
37274441 CTCACATATG
*
37274451 AGAAATTCTACCCTATAGGGGTATTTC
1 AGAAATTCTACCCTACAGGGGTATTTC
*
37274478 GGAAATTCTACCCTACAGGGGTATTTC
1 AGAAATTCTACCCTACAGGGGTATTTC
*
37274505 AGTAATT
1 AGAAATT
37274512 TCACAATCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (27 bp):
AGAAATTCTACCCTACAGGGGTATTTC
Found at i:37274546 original size:27 final size:27
Alignment explanation
Indices: 37274516--37275062 Score: 633
Period size: 27 Copynumber: 20.3 Consensus size: 27
37274506 GTAATTTCAC
* * * *
37274516 AATCAAGGGTAAAATGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
37274543 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
37274570 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
37274597 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
37274624 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
37274651 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
37274678 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
37274705 AATCGAGGGTAAAATAGTAATTCTGT-
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
37274731 AACCTAAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
37274759 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
37274786 AATTGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
37274813 AATTGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
37274840 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
37274867 AATTGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
37274894 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
37274921 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
37274948 AA-CTGAGGGTAAAACGGTAATTTTAG-A
1 AATC-GAGGGTAAAACGGTAATTCT-GTA
* *
37274975 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
37275002 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
37275029 AA-CTGAGGGGAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
37275056 AATCGAG
1 AATCGAG
37275063 AGTACTTTGG
Statistics
Matches: 447, Mismatches: 57, Indels: 32
0.83 0.11 0.06
Matches are distributed among these distances:
26 7 0.02
27 431 0.96
28 9 0.02
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:37284597 original size:54 final size:55
Alignment explanation
Indices: 37284512--37284619 Score: 200
Period size: 54 Copynumber: 2.0 Consensus size: 55
37284502 GATAGCTGGA
*
37284512 GAACCAAAATCTATAAAACAGAGAATCAAGGAGACGGATTAAGCAATTTATGCTT
1 GAACCAAAATCTATAAAACAGAGAATCAAGGAGACGGAGTAAGCAATTTATGCTT
37284567 GAACCAAAATCTAT-AAACAGAGAATCAAGGAGACGGAGTAAGCAATTTATGCT
1 GAACCAAAATCTATAAAACAGAGAATCAAGGAGACGGAGTAAGCAATTTATGCT
37284620 AAGTAAGTTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
54 38 0.73
55 14 0.27
ACGTcount: A:0.45, C:0.15, G:0.19, T:0.20
Consensus pattern (55 bp):
GAACCAAAATCTATAAAACAGAGAATCAAGGAGACGGAGTAAGCAATTTATGCTT
Found at i:37284989 original size:40 final size:40
Alignment explanation
Indices: 37284952--37285137 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
37284942 GCTACTCGTT
*
37284952 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
37284992 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
37285032 CAAATTCCTTC-GGATCTTAGTCCGGATTTAGTAAATCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
37285072 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AACTCGCA
37285113 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37285138 CATCATTCAA
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.02
40 111 0.87
41 13 0.10
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:37297057 original size:29 final size:29
Alignment explanation
Indices: 37297024--37297097 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
37297014 GTTGTGAGAT
* *
37297024 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
37297053 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
37297082 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
37297098 TGGTTGATGA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:37299568 original size:21 final size:21
Alignment explanation
Indices: 37299537--37299597 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
37299527 CTCATGAAAC
*
37299537 AGGGC-ACACGCTCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
37299557 AGGGCAACACGCCCTTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
37299578 AGGGCAACACGCCCTTGTGG
1 AGGGCAACACGCCCGTGTGG
37299598 TCATTATAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
20 5 0.13
21 33 0.87
ACGTcount: A:0.21, C:0.28, G:0.36, T:0.15
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:37326568 original size:29 final size:29
Alignment explanation
Indices: 37326521--37326599 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
37326511 CTTAATAATC
* *
37326521 AACCACGCACACATAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
37326551 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
37326580 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
37326600 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.29, C:0.33, G:0.15, T:0.23
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:37330707 original size:27 final size:28
Alignment explanation
Indices: 37330672--37330851 Score: 135
Period size: 27 Copynumber: 6.6 Consensus size: 28
37330662 CCTCAGTTTA
** *
37330672 TAAAATTACCT-AAATACCCTTGGA-TTA
1 TAAAATTA-CTAAAATACCCTCCGATTTG
*
37330699 TAAAATTACTGAAATACCCT-CGATTTG
1 TAAAATTACTAAAATACCCTCCGATTTG
37330726 TAAAATTACTAAAATA-CCTCCGATTTG
1 TAAAATTACTAAAATACCCTCCGATTTG
** * *
37330753 TAAAATTACCGAACTACCCT-CGGTTTG
1 TAAAATTACTAAAATACCCTCCGATTTG
* *
37330780 TAAAATTA-TCGAACTACCC-CCAGA-TTG
1 TAAAATTACT-AAAATACCCTCC-GATTTG
* * *
37330807 TAAAATTATTGAAATACCCTCAG-TTTG
1 TAAAATTACTAAAATACCCTCCGATTTG
**
37330834 TAAAATTACCGAAATACC
1 TAAAATTACTAAAATACC
37330852 TTTGTAGTGT
Statistics
Matches: 130, Mismatches: 13, Indels: 20
0.80 0.08 0.12
Matches are distributed among these distances:
26 7 0.05
27 117 0.90
28 6 0.05
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (28 bp):
TAAAATTACTAAAATACCCTCCGATTTG
Found at i:37330808 original size:81 final size:81
Alignment explanation
Indices: 37330662--37330851 Score: 233
Period size: 81 Copynumber: 2.3 Consensus size: 81
37330652 GTTGTTAAGA
* * * *
37330662 CCTCAGTTTATAAAATTACCTAAATACCCTTGGATTATAAAATTACTGAAATACCCTCGATTTGT
1 CCTCAGTTTGTAAAATTACCGAAATACCCTCGGATTATAAAATTACTGAAATACCCCCGATTTGT
37330727 AAAATTACTAAAATA-
66 AAAATTACTAAAATAC
* * * * *
37330742 CCTCCGATTTGTAAAATTACCGAACTACCCTCGGTTTGTAAAATTA-TCGAACTACCCCCAGA-T
1 CCTCAG-TTTGTAAAATTACCGAAATACCCTCGGATTATAAAATTACT-GAAATACCCCC-GATT
* *
37330805 TGTAAAATTATTGAAATAC
63 TGTAAAATTACTAAAATAC
37330824 CCTCAGTTTGTAAAATTACCGAAATACC
1 CCTCAGTTTGTAAAATTACCGAAATACC
37330852 TTTGTAGTGT
Statistics
Matches: 93, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 6 0.06
81 80 0.86
82 7 0.08
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (81 bp):
CCTCAGTTTGTAAAATTACCGAAATACCCTCGGATTATAAAATTACTGAAATACCCCCGATTTGT
AAAATTACTAAAATAC
Found at i:37330869 original size:54 final size:53
Alignment explanation
Indices: 37330662--37330851 Score: 204
Period size: 54 Copynumber: 3.5 Consensus size: 53
37330652 GTTGTTAAGA
* * * *
37330662 CCTCAGTTTATAAAATTACCTAAATACCCTTGGATTATAAAATTACTGAAATAC
1 CCTCAGTTTGTAAAATTACCGAAATACCCCT-GATTGTAAAATTACTGAAATAC
** * *
37330716 CCTC-GATTTGTAAAATTACTAAAATACCTCC-GATTTGTAAAATTACCGAACTAC
1 CCTCAG-TTTGTAAAATTACCGAAATACC-CCTGA-TTGTAAAATTACTGAAATAC
* * * * *
37330770 CCTCGGTTTGTAAAATTATCGAACTACCCCCAGATTGTAAAATTATTGAAATAC
1 CCTCAGTTTGTAAAATTACCGAAATA-CCCCTGATTGTAAAATTACTGAAATAC
37330824 CCTCAGTTTGTAAAATTACCGAAATACC
1 CCTCAGTTTGTAAAATTACCGAAATACC
37330852 TTTGTAGTGT
Statistics
Matches: 113, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
53 5 0.04
54 102 0.90
55 6 0.05
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (53 bp):
CCTCAGTTTGTAAAATTACCGAAATACCCCTGATTGTAAAATTACTGAAATAC
Found at i:37331269 original size:22 final size:22
Alignment explanation
Indices: 37331221--37331280 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
37331211 GTAATCTGAT
37331221 TATGGCTCTGTGCCAACCTAAA
1 TATGGCTCTGTGCCAACCTAAA
* * * * *
37331243 AATGGCTCTGTGCCATCTTGAC
1 TATGGCTCTGTGCCAACCTAAA
*
37331265 TATGGCTTTGTGCCAA
1 TATGGCTCTGTGCCAA
37331281 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
TATGGCTCTGTGCCAACCTAAA
Found at i:37336467 original size:43 final size:43
Alignment explanation
Indices: 37336404--37336491 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 43
37336394 ATCATGGAGA
* * * *
37336404 ATAAATTTGATCGTCGATAAAAGGTTTTATCACTTTGAGCAAG
1 ATAAATTTGATCGTCAATAAAAGGATCTATCACTCTGAGCAAG
* *
37336447 ATAAATTTGATTGTTAATAAAAGGATCTATCACTCTGAGCAAG
1 ATAAATTTGATCGTCAATAAAAGGATCTATCACTCTGAGCAAG
37336490 AT
1 AT
37336492 CATGCTGATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (43 bp):
ATAAATTTGATCGTCAATAAAAGGATCTATCACTCTGAGCAAG
Done.