Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 133 of 297
Found at i:45661364 original size:80 final size:81
Alignment explanation
Indices: 45661189--45661373 Score: 243
Period size: 80 Copynumber: 2.3 Consensus size: 81
45661179 TATTCGAATG
* * *
45661189 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
*
45661254 ATTCGTGCGAGTTGCT
66 ATTCGTGCGAGTTGCC
* * *
45661270 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGATTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
*
45661333 CA-TCTGTGCTAG-TGACC
65 CATTC-GTGCGAGTTG-CC
45661350 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
45661374 CTTGTGCAAG
Statistics
Matches: 93, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
79 5 0.05
80 56 0.60
81 32 0.34
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCGTGCGAGTTGCC
Found at i:45665229 original size:18 final size:18
Alignment explanation
Indices: 45665208--45665261 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 18
45665198 CTAAACAATT
*
45665208 AAACTCAACCAAATACCG
1 AAACTCAACCAAATACCC
* *
45665226 AAAC-CAACCTAAT---T
1 AAACTCAACCAAATACCC
45665240 AAACTCAACCAAATACCC
1 AAACTCAACCAAATACCC
45665258 AAAC
1 AAAC
45665262 CCAAACTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
14 4 0.14
15 8 0.29
17 8 0.29
18 8 0.29
ACGTcount: A:0.52, C:0.33, G:0.02, T:0.13
Consensus pattern (18 bp):
AAACTCAACCAAATACCC
Found at i:45665242 original size:32 final size:33
Alignment explanation
Indices: 45665195--45665271 Score: 113
Period size: 32 Copynumber: 2.4 Consensus size: 33
45665185 TGCCTAAACT
* *
45665195 AACCTAAAC-AATTAAACTCAACCAAATACCGA
1 AACCCAAACTAATTAAACTCAACCAAATACCCA
*
45665227 AA-CCAACCTAATTAAACTCAACCAAATACCCA
1 AACCCAAACTAATTAAACTCAACCAAATACCCA
45665259 AACCCAAACTAAT
1 AACCCAAACTAAT
45665272 GGTCCAATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
31 4 0.10
32 26 0.67
33 9 0.23
ACGTcount: A:0.52, C:0.31, G:0.01, T:0.16
Consensus pattern (33 bp):
AACCCAAACTAATTAAACTCAACCAAATACCCA
Found at i:45669183 original size:22 final size:22
Alignment explanation
Indices: 45669149--45669190 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
45669139 CATGACTAAC
*
45669149 ATTCATTCATCATTTATTCAAT
1 ATTCATTCATCATTCATTCAAT
**
45669171 ATTCATTTGTCATTCATTCA
1 ATTCATTCATCATTCATTCA
45669191 TTCATTGCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.29, C:0.19, G:0.02, T:0.50
Consensus pattern (22 bp):
ATTCATTCATCATTCATTCAAT
Found at i:45676389 original size:26 final size:24
Alignment explanation
Indices: 45676367--45676442 Score: 82
Period size: 24 Copynumber: 3.1 Consensus size: 24
45676357 ATTTTAATAG
45676367 AATTATTATTAAATATAATTTAAT
1 AATTATTATTAAATATAATTTAAT
* * * *
45676391 AATAAATAATTTAATCATATTTTAAT
1 AAT-TATTATTAAAT-ATAATTTAAT
*
45676417 -ATTATTATTAAATACAATTTAAT
1 AATTATTATTAAATATAATTTAAT
45676440 AAT
1 AAT
45676443 AGTGTTTTTA
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
23 8 0.20
24 13 0.32
25 10 0.25
26 9 0.22
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (24 bp):
AATTATTATTAAATATAATTTAAT
Found at i:45678445 original size:26 final size:24
Alignment explanation
Indices: 45678423--45678498 Score: 82
Period size: 24 Copynumber: 3.1 Consensus size: 24
45678413 ATTTTAATAG
45678423 AATTATTATTAAATATAATTTAAT
1 AATTATTATTAAATATAATTTAAT
* * * *
45678447 AATAAATAATTTAATCATATTTTAAT
1 AAT-TATTATTAAAT-ATAATTTAAT
*
45678473 -ATTATTATTAAATACAATTTAAT
1 AATTATTATTAAATATAATTTAAT
45678496 AAT
1 AAT
45678499 AGTGTTTTTA
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
23 8 0.20
24 13 0.32
25 10 0.25
26 9 0.22
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (24 bp):
AATTATTATTAAATATAATTTAAT
Found at i:45679415 original size:19 final size:19
Alignment explanation
Indices: 45679391--45679430 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
45679381 TTGTTTTCTA
45679391 AATTTCATTACTAGGTTTT
1 AATTTCATTACTAGGTTTT
45679410 AATTTCATTACTAGGTTTT
1 AATTTCATTACTAGGTTTT
45679429 AA
1 AA
45679431 GTTTTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (19 bp):
AATTTCATTACTAGGTTTT
Found at i:45686359 original size:39 final size:39
Alignment explanation
Indices: 45686315--45686393 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
45686305 TTATCATACA
* *
45686315 AAATTTTTATCCATGCATTGCATTTTTCATTTCATCCAT
1 AAATTTTTATCCACGCATTGCATCTTTCATTTCATCCAT
45686354 AAATTTTTATCCACGCATTGCATCTTTCATTTCATCCAT
1 AAATTTTTATCCACGCATTGCATCTTTCATTTCATCCAT
45686393 A
1 A
45686394 TTGCCTATGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.27, C:0.23, G:0.05, T:0.46
Consensus pattern (39 bp):
AAATTTTTATCCACGCATTGCATCTTTCATTTCATCCAT
Found at i:45686511 original size:16 final size:15
Alignment explanation
Indices: 45686474--45686517 Score: 79
Period size: 15 Copynumber: 2.9 Consensus size: 15
45686464 ACATGTGTTT
45686474 TAAATACTTAATGAG
1 TAAATACTTAATGAG
45686489 TAAATACTTAATGAG
1 TAAATACTTAATGAG
45686504 TAAAATACTTAATG
1 T-AAATACTTAATG
45686518 TGACAGGCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
15 16 0.57
16 12 0.43
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.34
Consensus pattern (15 bp):
TAAATACTTAATGAG
Found at i:45688666 original size:48 final size:48
Alignment explanation
Indices: 45688584--45688677 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
45688574 TTTCTTGGCT
* *
45688584 TAAAAACACCTAAGTCAGCCTAACTTCCACCAATAATGGATTCAACCG
1 TAAAAACACCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
* *
45688632 TAAAAACGCCTAAGTTAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACACCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
45688678 AGAATTCCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
47 4 0.10
48 36 0.90
ACGTcount: A:0.41, C:0.27, G:0.12, T:0.20
Consensus pattern (48 bp):
TAAAAACACCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:45703831 original size:137 final size:137
Alignment explanation
Indices: 45703683--45704814 Score: 1939
Period size: 137 Copynumber: 8.2 Consensus size: 137
45703673 AGCCATTAAT
* * * *
45703683 CTTATCCTCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCA
1 CTTATCTTCCTGAAATTGCAGTGGAGCAGACTGAAGATAGCAAATCTAATTTCCCTGAAGTTGTA
45703748 GTGGAACAGATTGAAGCTATAAATTACAGATCCTATCTCTCTGAAGTTGTAGTAGAGCAGGTCAA
66 GTGGAACAGATTGAAGCTATAAATTACAGATCCTATCTCTCTGAAGTTGTAGTAGAGCAGGTCAA
45703813 AACAAGC
131 AACAAGC
45703820 CTTATCTTCCTGAAATTGCAGTGGAGCAGACTGAAGATAGCAAATCTAATTTCCCTGAAGTTGTA
1 CTTATCTTCCTGAAATTGCAGTGGAGCAGACTGAAGATAGCAAATCTAATTTCCCTGAAGTTGTA
* *
45703885 GTGGAACAGATTGAAGCTATAAATTACAGATCCTATCTCTCTGAAGTTGCAGTAGAGTAGGTCAA
66 GTGGAACAGATTGAAGCTATAAATTACAGATCCTATCTCTCTGAAGTTGTAGTAGAGCAGGTCAA
45703950 AACAAGC
131 AACAAGC
* * * *
45703957 CTTATCTCCCT-AAAGTTGCAGTGGAACAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGC
1 CTTATCTTCCTGAAA-TTGCAGTGGAGCAGACTGAAGATAGCAAATCTAATTTCCCTGAAGTTGT
45704021 AGTGGAACAGATTGAAGCTATAAATTACAGATCCTATCTCTCTGAAGTTGTAGTAGAGCAGGTCA
65 AGTGGAACAGATTGAAGCTATAAATTACAGATCCTATCTCTCTGAAGTTGTAGTAGAGCAGGTCA
45704086 AAACAAGC
130 AAACAAGC
45704094 CTTATCTTCCTGAAATTGCAGTGGAGCAGACTGAAGATAGCAAATCTAATTTCCCTGAAGTTGTA
1 CTTATCTTCCTGAAATTGCAGTGGAGCAGACTGAAGATAGCAAATCTAATTTCCCTGAAGTTGTA
45704159 GTGGAACAGATTGAAGCTATAAATTACAGATCCTATCTCTCTGAAGTTGTAGTAGAGCAGGTCAA
66 GTGGAACAGATTGAAGCTATAAATTACAGATCCTATCTCTCTGAAGTTGTAGTAGAGCAGGTCAA
45704224 AACAAGC
131 AACAAGC
45704231 CTTATCTTCCTGAAATTGCAGTGGAGCAGACTGAAGATAGCAAATCTAATTTCCCTGAAGTTGTA
1 CTTATCTTCCTGAAATTGCAGTGGAGCAGACTGAAGATAGCAAATCTAATTTCCCTGAAGTTGTA
45704296 GTGGAACAGATTGAAGCTATAAATTACAGATCCTATCTCTCTGAAGTTGTAGTAGAGCAGGTCAA
66 GTGGAACAGATTGAAGCTATAAATTACAGATCCTATCTCTCTGAAGTTGTAGTAGAGCAGGTCAA
45704361 AACAAGC
131 AACAAGC
45704368 CTTATCTTCCTGAAATTGCAGTGGAGCAGACTGAAGATAGCAAATCTAATTTCCCTGAAGTTGTA
1 CTTATCTTCCTGAAATTGCAGTGGAGCAGACTGAAGATAGCAAATCTAATTTCCCTGAAGTTGTA
45704433 GTGGAACAGATTGAAGCTATAAATTACAGATCCTATCTCTCTGAAGTTGTAGTAGAGCAGGTCAA
66 GTGGAACAGATTGAAGCTATAAATTACAGATCCTATCTCTCTGAAGTTGTAGTAGAGCAGGTCAA
45704498 AACAAGC
131 AACAAGC
45704505 CTTATCTTCCTGAAATTGCAGTGGAGCAGACTGAAGATAGCAAATCTAATTTCCCTGAAGTTGTA
1 CTTATCTTCCTGAAATTGCAGTGGAGCAGACTGAAGATAGCAAATCTAATTTCCCTGAAGTTGTA
* *
45704570 GTGGAACAGATTGAAGCTATAAATTACAGATCCTATCTCTCTGAAGTTGCAGTAGAGTAGGTCAA
66 GTGGAACAGATTGAAGCTATAAATTACAGATCCTATCTCTCTGAAGTTGTAGTAGAGCAGGTCAA
45704635 AACAAGC
131 AACAAGC
* * * *
45704642 CTTATCTCCCT-AAAGTTGCAGTGGAACAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGC
1 CTTATCTTCCTGAAA-TTGCAGTGGAGCAGACTGAAGATAGCAAATCTAATTTCCCTGAAGTTGT
** * * *
45704706 AGTGGAACAGATTGAAGCTATAAATCGCAGA-CCTCATCT-TCTTGAAGTTGCAGTGGATCAGGT
65 AGTGGAACAGATTGAAGCTATAAATTACAGATCCT-ATCTCTC-TGAAGTTGTAGTAGAGCAGG-
*
45704769 TAAAATTACAAGC
127 TCAAA--ACAAGC
* * * *
45704782 CTTATCTCCCTGAAGTTGTAGTGGAGCGGACTG
1 CTTATCTTCCTGAAATTGCAGTGGAGCAGACTG
45704815 GAGTAGGGCA
Statistics
Matches: 954, Mismatches: 32, Indels: 15
0.95 0.03 0.01
Matches are distributed among these distances:
136 11 0.01
137 902 0.95
138 7 0.01
140 32 0.03
141 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (137 bp):
CTTATCTTCCTGAAATTGCAGTGGAGCAGACTGAAGATAGCAAATCTAATTTCCCTGAAGTTGTA
GTGGAACAGATTGAAGCTATAAATTACAGATCCTATCTCTCTGAAGTTGTAGTAGAGCAGGTCAA
AACAAGC
Found at i:45703855 original size:92 final size:91
Alignment explanation
Indices: 45703692--45704686 Score: 276
Period size: 92 Copynumber: 10.8 Consensus size: 91
45703682 TCTTATCCTC
* * * ** *
45703692 CTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTAT-TTCCCTGAAGTTGCAGTGGAACA
1 CTGAAGTTGTAGTAGAGCAG-CTCAA-ATA-CAAGCCTTATCTT-CCTGAAGTTGCAGTGGAGCA
* *
45703756 GATTGAAGCTATAAATTACAGATCCTATCTCT
62 GACTGAAGCTACAAA-TACA-ATCCTATCTCT
* *
45703788 CTGAAGTTGTAGTAGAGCAGGTCAAA-ACAAGCCTTATCTTCCTGAAATTGCAGTGGAGCAGACT
1 CTGAAGTTGTAGTAGAGCAGCTCAAATACAAGCCTTATCTTCCTGAAGTTGCAGTGGAGCAGACT
*
45703852 GAAGATAGCAAAT-CTAAT--T-TC-C-
66 GAAGCTA-CAAATAC-AATCCTATCTCT
* * *
45703874 CTGAAGTTGTAGTGGAACAGATTGAAGCTATAAATTACAGATCC-TATC-TCTCTGAAGTTGCAG
1 CTGAAGTTGTAGT-----AGA--GCAGCT-CAAA-TACA-AGCCTTATCTTC-CTGAAGTTGCAG
* * *
45703937 T--AG-AG--T--AGGT-CAAA-ACAAGCCTTATCTCC
55 TGGAGCAGACTGAAGCTACAAATACAATCC-TATCTCT
* * * * * ** *
45703966 CTAAAGTTGCAGTGGAACAGACTGAAGATAGCAAATCTTAT-TTCCCTGAAGTTGCAGTGGAACA
1 CTGAAGTTGTAGTAGAGCAG-CTCAA-ATA-CAAGCCTTATCTT-CCTGAAGTTGCAGTGGAGCA
* *
45704030 GATTGAAGCTATAAATTACAGATCCTATCTCT
62 GACTGAAGCTACAAA-TACA-ATCCTATCTCT
* *
45704062 CTGAAGTTGTAGTAGAGCAGGTCAAA-ACAAGCCTTATCTTCCTGAAATTGCAGTGGAGCAGACT
1 CTGAAGTTGTAGTAGAGCAGCTCAAATACAAGCCTTATCTTCCTGAAGTTGCAGTGGAGCAGACT
*
45704126 GAAGATAGCAAAT-CTAAT--T-TC-C-
66 GAAGCTA-CAAATAC-AATCCTATCTCT
* * * *
45704148 CTGAAGTTGTAGTGGAACAGATTGAAGCTATAAATTACAGATCC-TATC-TCTCTGAAGTTGTAG
1 CTGAAGTTGTAGT-----AGA--GCAGCT-CAAA-TACA-AGCCTTATCTTC-CTGAAGTTGCAG
* *
45704211 T--AG-AG-C---AGGT-CAAA-ACAAGCCTTATCT-T
55 TGGAGCAGACTGAAGCTACAAATACAATCC-TATCTCT
* * * * ** * * *
45704239 CCTGAAATTGCAGTGGAGCAGACTGAAGATAGCAAATCTAAT-TTCCCTGAAGTTGTAGTGGAAC
1 -CTGAAGTTGTAGTAGAGCAG-CTCAA-ATA-CAAGCCTTATCTT-CCTGAAGTTGCAGTGGAGC
* *
45704303 AGATTGAAGCTATAAATTACAGATCCTATCTCT
61 AGACTGAAGCTACAAA-TACA-ATCCTATCTCT
* *
45704336 CTGAAGTTGTAGTAGAGCAGGTCAAA-ACAAGCCTTATCTTCCTGAAATTGCAGTGGAGCAGACT
1 CTGAAGTTGTAGTAGAGCAGCTCAAATACAAGCCTTATCTTCCTGAAGTTGCAGTGGAGCAGACT
*
45704400 GAAGATAGCAAAT-CTAAT--T-TC-C-
66 GAAGCTA-CAAATAC-AATCCTATCTCT
* * * *
45704422 CTGAAGTTGTAGTGGAACAGATTGAAGCTATAAATTACAGATCC-TATC-TCTCTGAAGTTGTAG
1 CTGAAGTTGTAGT-----AGA--GCAGCT-CAAA-TACA-AGCCTTATCTTC-CTGAAGTTGCAG
* *
45704485 T--AG-AG-C---AGGT-CAAA-ACAAGCCTTATCT-T
55 TGGAGCAGACTGAAGCTACAAATACAATCC-TATCTCT
* * * * ** * * *
45704513 CCTGAAATTGCAGTGGAGCAGACTGAAGATAGCAAATCTAAT-TTCCCTGAAGTTGTAGTGGAAC
1 -CTGAAGTTGTAGTAGAGCAG-CTCAA-ATA-CAAGCCTTATCTT-CCTGAAGTTGCAGTGGAGC
* *
45704577 AGATTGAAGCTATAAATTACAGATCCTATCTCT
61 AGACTGAAGCTACAAA-TACA-ATCCTATCTCT
* * * * * *
45704610 CTGAAGTTGCAGTAGAGTAGGTCAAA-ACAAGCCTTATCTCCCTAAAGTTGCAGTGGAACAGACT
1 CTGAAGTTGTAGTAGAGCAGCTCAAATACAAGCCTTATCTTCCTGAAGTTGCAGTGGAGCAGACT
*
45704674 GAAGATAGCAAAT
66 GAAGCTA-CAAAT
45704687 CTTATTTCCC
Statistics
Matches: 662, Mismatches: 114, Indels: 250
0.65 0.11 0.24
Matches are distributed among these distances:
85 26 0.04
86 109 0.16
87 27 0.04
88 9 0.01
89 21 0.03
90 6 0.01
91 21 0.03
92 179 0.27
93 50 0.08
94 28 0.04
95 18 0.03
96 148 0.22
97 20 0.03
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (91 bp):
CTGAAGTTGTAGTAGAGCAGCTCAAATACAAGCCTTATCTTCCTGAAGTTGCAGTGGAGCAGACT
GAAGCTACAAATACAATCCTATCTCT
Found at i:45708651 original size:75 final size:75
Alignment explanation
Indices: 45708560--45709653 Score: 799
Period size: 75 Copynumber: 13.9 Consensus size: 75
45708550 TTTCTGTTTC
* * ** * *
45708560 AAAATTCAACTCATATTACGAGAAATAAGTTGAGCCTCAGGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
45708625 TGTTTTTCAA
66 TGTTTTTCAA
* * * *
45708635 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGTCT-TGGCTCACACGCTGAGGTATTTTTAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAAT
45708699 TTCTGTTTTAATTTCTATTTTTTAA
63 TTCTG--TT--TTTC--------AA
* * * * * * * *
45708724 AAAAATTAATTCATATT--GAGAGGTGAGTTGAGCTTCGGGGCGCGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
45708787 TGTGTTTTAATTTA
66 TGT-TTTTCA---A
*
45708801 TGTTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
1 ------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
45708866 AATTTCTGTTTTTCAA
60 AATTTCTGTTTTTCAA
* * * **
45708882 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAA-TT-
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
* **
45708945 T-ATCATC-A
66 TGTTTTTCAA
* * *
45708953 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGAC-CTGTTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC-GCTGAGGTATTTTCAA--T
***
45709017 CTGCTCAATTTATGTTTTTTTC
63 -T--TC------TGTTTTTCAA
* *
45709039 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGGACACGCTAAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
45709104 TATTTTTC-A
66 TGTTTTTCAA
* * * * *
45709113 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
45709178 TGTGTTTTAATTTA
66 TGT-TTTTCA---A
* * * **
45709192 TGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCAAGTCACATTGAGGTATTTT-
1 ------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
*
45709256 -A--TC-----ATCAA
60 AATTTCTGTTTTTCAA
*
45709264 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
45709329 TGTTTTAATTTCTGTGTTTCAA
66 TG----------T-T-TTTCAA
* * * * * *
45709351 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACGATGACGTATTTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
45709416 TGTTTTTC--
66 TGTTTTTCAA
* * *
45709424 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
45709489 TGTTTTCTTCAATTTA
66 TG-TTT-TTC-A---A
*
45709505 TGTTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACGCTGAGGTATT
1 --------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTATT
* *
45709569 TTTAATTTCTGCTTTTCAA
57 TTCAATTTCTGTTTTTCAA
* *
45709588 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCGATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
45709653 T
66 T
45709654 TCTTTCCAAT
Statistics
Matches: 818, Mismatches: 106, Indels: 190
0.73 0.10 0.17
Matches are distributed among these distances:
66 53 0.06
68 1 0.00
70 3 0.00
71 56 0.07
72 4 0.00
73 59 0.07
74 71 0.09
75 164 0.20
76 1 0.00
77 27 0.03
79 3 0.00
81 8 0.01
82 3 0.00
83 18 0.02
84 8 0.01
85 118 0.14
86 55 0.07
87 84 0.10
88 4 0.00
89 76 0.09
90 2 0.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTTTTCAA
Found at i:45709003 original size:71 final size:73
Alignment explanation
Indices: 45708807--45709016 Score: 282
Period size: 71 Copynumber: 2.9 Consensus size: 73
45708797 TTTATGTTTC
* * *
45708807 AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAA-TT-
* **
45708872 TGTTTTTCAA
64 TGATCATCAA
* * *
45708882 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAATTT-
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTG
45708946 ATCATC-A
66 ATCATCAA
*
45708953 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGAC-CTGTTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC-GTTGAGGTATTTTCAATTT
45709017 CTGCTCAATT
Statistics
Matches: 121, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
70 1 0.01
71 59 0.49
72 3 0.02
73 1 0.01
74 2 0.02
75 55 0.45
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTG
ATCATCAA
Found at i:45709098 original size:86 final size:81
Alignment explanation
Indices: 45708953--45710643 Score: 773
Period size: 89 Copynumber: 20.5 Consensus size: 81
45708943 TTTATCATCA
* * *
45708953 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGAC-CTGTTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC-GCTGAGGTATTTTCAATTT
45709017 CTGCTCAATTTATGTTTTTTTC
65 -TG-TC--TTTAT-TTTTTTTC
* *
45709039 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGGACACGCTAAGGTATTTTCAA--TT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTT
45709102 -TC--TA---TTTTTC
66 GTCTTTATTTTTTTTC
* * * *
45709112 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACACTGAGGTATTGTCAATTT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA-TT
* *
45709177 TTGTGTTTTAATTTATGTTTC
64 TTGT-CTTT-ATTT-TTTTTC
* * * **
45709198 AAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCAAGTCACATTGAGGTATTTT--A----
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTT
* * ******
45709257 -TCATCA-AAAAAATC
66 GTCTTTATTTTTTTTC
* * * * * * * ** * * ** *
45709271 --AACTCATATTGCGAGA--G-GTGAGTTGAGCCTCAG-GGCACG-CTGA-GGT-ATTTTCAATT
1 AAAAATCA-ACT-C-ATATTGCGAGAGGTGAG-TTGAGCCTCAGGAC--ACGCTGA-GGT-ATTT
** ** * * *
45709327 TCTGTTTT-AATTT-CTGTGTTTC
58 TCAATTTTGTCTTTATTTTTTTTC
* * * * * *
45709349 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACGATGACGTATTTTTAA--
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
*
45709412 TT-TC-----TGTTTTTC
64 TTGTCTTTATTTTTTTTC
* * *
45709424 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT-
*
45709489 TGTTTTCTTCAATTTATGTTTTTC
65 TG---TCTT-TA-TT-T-TTTTTC
* *
45709513 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACGCTGAGGTATTTTTAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTATTTTCAATTT
***
45709577 CTG-C------TTTTCAA
65 -TGTCTTTATTTTTTTTC
* *
45709588 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCGATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT-
*
45709653 T-TCTTTCCAATTTCTGCTCTTC
65 TGTCTTT---ATTT-T--TTTTC
* *
45709675 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCGATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
*
45709740 TCT-TCTTTCCAATTTCTGCTCTTC
64 T-TGTCTTT---ATTT-T--TTTTC
*
45709764 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA--
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
* *
45709827 TT-TC-----TGTTTGTC
64 TTGTCTTTATTTTTTTTC
* * * *
45709839 AAAAATCAACTCATATCGCGAGAGATGAGTTGAGCCTC-GGCTCACATGCTGAGGTCTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAAT
* *
45709903 TTCTATTTTTAATATCTGTTTTTC
63 TT-TGTCTTT-AT-T-T-TTTTTC
* *
45709927 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT-
*
45709992 TGTTTTCTTCAATTTATCTTTTTC
65 TG---TCTT-TA-TT-T-TTTTTC
* * * *
45710016 AAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAAATTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC-AATTT
***
45710081 TG-C------TTTTCAA
65 TGTCTTTATTTTTTTTC
*
45710091 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT-
*
45710156 TGTTTTCTTCAATTTATCTTTTTC
65 TG---TCTT-TA-TT-T-TTTTTC
* * * ** *** * *
45710180 AAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACAAT-TTCTGCTTTCCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTTCAATTT
* *
45710244 CTGCTCTTCA--------A
65 -TG-TCTTTATTTTTTTTC
*
45710255 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT-
*
45710320 TG-CTTTCCAATTTCTGCTCTTC
65 TGTCTTT---ATTT-T--TTTTC
* *
45710342 AAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTC-GGCTCACACGCTGAGGT-CTTTCA
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCA
* *
45710405 ATTTTTGTTTTTCAATTTCTGTTCGTC
61 A-TTTTGTCTTT--ATTT-T-TT-TTC
*
45710432 -AAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGAGG-CACGCTGAGGTATTTTCAATTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTATTTTCAATT-
* *
45710495 ATGTTTTTTCAATTTATGCTTTTC
64 TTG-TCTTT--ATTT-T--TTTTC
* * * * *
45710519 AAGAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTC--AA
* ** *
45710584 TCTGTTTGGC-AAATTCTGTTTTC
62 --T-TTTGTCTTTATT-TTTTTTC
*
45710607 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
45710644 TTGCTCATGT
Statistics
Matches: 1258, Mismatches: 196, Indels: 300
0.72 0.11 0.17
Matches are distributed among these distances:
70 2 0.00
71 18 0.01
72 12 0.01
73 100 0.08
74 64 0.05
75 208 0.17
76 6 0.00
77 7 0.01
78 6 0.00
79 6 0.00
80 3 0.00
81 12 0.01
82 20 0.02
83 4 0.00
84 2 0.00
85 68 0.05
86 95 0.08
87 59 0.05
88 120 0.10
89 379 0.30
90 43 0.03
91 18 0.01
92 2 0.00
94 3 0.00
95 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.34
Consensus pattern (81 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTT
GTCTTTATTTTTTTTC
Found at i:45709293 original size:66 final size:66
Alignment explanation
Indices: 45709198--45709321 Score: 203
Period size: 66 Copynumber: 1.9 Consensus size: 66
45709188 TTTATGTTTC
* * *
45709198 AAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCAAGTCACATTGAGGTATTTTATCATCA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACACTGAGGTATTTTATCATCA
45709263 A
66 A
* *
45709264 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACACTGAGGTATTTT
45709322 CAATTTCTGT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 53 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (66 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACACTGAGGTATTTTATCATCA
A
Found at i:45709340 original size:12 final size:13
Alignment explanation
Indices: 45709318--45709350 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
45709308 CGCTGAGGTA
45709318 TTTTCAATTTCTG
1 TTTTCAATTTCTG
45709331 TTTT-AATTTCTG
1 TTTTCAATTTCTG
45709343 TGTTTCAA
1 T-TTTCAA
45709351 AAAAATCAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 9 0.50
13 7 0.39
14 2 0.11
ACGTcount: A:0.18, C:0.12, G:0.09, T:0.61
Consensus pattern (13 bp):
TTTTCAATTTCTG
Found at i:45709406 original size:87 final size:87
Alignment explanation
Indices: 45709260--45709421 Score: 270
Period size: 87 Copynumber: 1.9 Consensus size: 87
45709250 TATTTTATCA
* * *
45709260 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGGCACGATGACGTATTTTCAA
45709325 TTTCTGTTTTAATTTCTGTGTT
66 TTTCTGTTTTAATTTCTGTGTT
* * *
45709347 TCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACGATGACGTATTTTTAA
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGGCACGATGACGTATTTTCAA
45709412 TTTCTGTTTT
66 TTTCTGTTTT
45709422 TCAAAAATCA
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 69 1.00
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (87 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGGCACGATGACGTATTTTCAA
TTTCTGTTTTAATTTCTGTGTT
Found at i:45709462 original size:73 final size:74
Alignment explanation
Indices: 45709331--45709494 Score: 222
Period size: 73 Copynumber: 2.2 Consensus size: 74
45709321 TCAATTTCTG
* * * *
45709331 TTTTAATTTCTGTGTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCAC
1 TTTTAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC
*
45709396 GATGACGTAT
65 GATGACGTAA
* *
45709406 TTTTAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATG
1 TTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACG
* *
45709470 CTGAGGTAA
66 ATGACGTAA
*
45709479 TTTCAATTTCTGTTTT
1 TTTTAATTTCTGTTTT
45709495 CTTCAATTTA
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
73 62 0.78
75 17 0.22
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (74 bp):
TTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACG
ATGACGTAA
Found at i:45709501 original size:16 final size:16
Alignment explanation
Indices: 45709480--45709510 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45709470 CTGAGGTAAT
*
45709480 TTCAATTTCTGTTTTC
1 TTCAATTTATGTTTTC
45709496 TTCAATTTATGTTTT
1 TTCAATTTATGTTTT
45709511 TCAAAAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.13, G:0.06, T:0.65
Consensus pattern (16 bp):
TTCAATTTATGTTTTC
Found at i:45709622 original size:164 final size:164
Alignment explanation
Indices: 45708863--45710556 Score: 1604
Period size: 164 Copynumber: 10.3 Consensus size: 164
45708853 CTGAGGTATT
* * * *
45708863 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACA
1 TTCAATTTATGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACG
* * * *
45708928 TTGAGGTATTTTCAATTTAT-C--ATC-AAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
64 CTGAGGTATTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * *
45708989 TCAAGAC-CTGTTGAGGTATTTTCAATTTCTG----C
129 TCAGGACAC-GCTGAGGTAATTTCAATTTCTGTTTTC
*
45709021 -TCAATTTATGTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTC-AGGACAC
1 TTCAATTTATG--TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CAC
* **
45709084 GCTAAGGTATTTTCAATTTCTATTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
63 GCTGAGGTATTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * * * *
45709148 CTCGGGGCACACTGAGGT-ATTGTCAATTTTTGTGTT-
128 CTCAGGACACGCTGAGGTAATT-TCAATTTCTGTTTTC
* * **
45709184 TT-AATTTATG--TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCAAGTCACATT
1 TTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCT
*
45709246 GAGGTATTTT--A----T-C--ATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
66 GAGGTATTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* *
45709302 AGGGCACGCTGAGGTATTTTCAATTTCTG--TT-
131 AGGACACGCTGAGGTAATTTCAATTTCTGTTTTC
* * * *
45709333 TT-AATTTCTGTGTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTC-AGGTCAC
1 TTCAATTTATGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CAC
* * * *
45709396 GATGACGTATTTTTAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
63 GCTGAGGTATTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* *
45709459 CTCAAGACATGCTGAGGTAATTTCAATTTCTGTTTTC
128 CTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTC
*
45709496 TTCAATTTATGTTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCT
1 TTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCT
*
45709561 GAGGTATTTTTAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
66 GAGGTATTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* * *
45709626 AGGGCACGCTGAGGTATTTTCGATTTCT-TCTTTC
131 AGGACACGCTGAGGTAATTTCAATTTCTGT-TTTC
* * * *
45709660 --CAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
1 TTCAATTTATGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACG
*
45709723 CTGAGGTATTTTCGATTTCTTCTTTCCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAG
64 CTGAGG-----T--A-----T-TTT-CAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAG
45709788 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-----
115 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTC
* *
45709833 ------TT-TG----TCAAAAATCAACTCATATCGCGAGAGATGAGTTGAGCCTC--GGCTCACA
1 TTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG--CAC-
* ** *
45709885 TGCTGAGGTCTTTTCAATTTCTATTTTTAATATCTGTTTTTCAAAAATCAACTCATATTGCGAGA
63 -GCTGAGGTATTTTCAATTTCTGCTTTTCA-A----------AAAAATCAACTCATATTGCGAGA
*
45709950 GGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTCTGTTTTC
116 GGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTC
* * * *
45709999 TTCAATTTATCTTTTTCAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACGCT
1 TTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCT
*
45710064 GAGGTATTTTCAAATTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
66 GAGGTATTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
45710129 AGGACACGCTGAGGTAATTTCAATTTCTGTTTTC
131 AGGACACGCTGAGGTAATTTCAATTTCTGTTTTC
* * * * **
45710163 TTCAATTTATCTTTTTCAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACAAT
1 TTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCT
*** * * *
45710228 -TTCTGCTTTCCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
66 GAGGT-ATTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* * *
45710292 CAGGGCACGCTGAGGTATTTTCAATTTCTGCTTTC
130 CAGGACACGCTGAGGTAATTTCAATTTCTGTTTTC
* * * *
45710327 --CAATTTCTGCTCTTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTC--GGCTCA
1 TTCAATTTATGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG----
* * * * *
45710388 CACGCTGAGGT-CTTTCAATTTTTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGTGA
60 CACGCTGAGGTATTTTCAATTTCTGCTTTTCAA-----------AAAAATCAACTCATATTGCGA
* **
45710452 GAGGTGAGTTGAGCCTCGAGG-CACGCTGAGGTATTTTCAATTAATGTTTT-
114 GAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTAATTTCAATTTCTGTTTTC
* * *
45710502 TTCAATTTATGCTTTTCAAGAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC
1 TTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
45710557 GGGTCACATG
Statistics
Matches: 1303, Mismatches: 123, Indels: 203
0.80 0.08 0.12
Matches are distributed among these distances:
149 11 0.01
150 14 0.01
151 69 0.05
152 5 0.00
153 49 0.04
155 1 0.00
156 2 0.00
157 66 0.05
159 63 0.05
160 124 0.10
161 67 0.05
162 133 0.10
163 15 0.01
164 393 0.30
165 16 0.01
166 4 0.00
167 1 0.00
168 2 0.00
169 3 0.00
171 1 0.00
172 2 0.00
173 1 0.00
174 1 0.00
175 59 0.05
176 63 0.05
177 58 0.04
178 78 0.06
179 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35
Consensus pattern (164 bp):
TTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCT
GAGGTATTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
AGGACACGCTGAGGTAATTTCAATTTCTGTTTTC
Found at i:45710120 original size:75 final size:74
Alignment explanation
Indices: 45710016--45710162 Score: 240
Period size: 75 Copynumber: 2.0 Consensus size: 74
45710006 TATCTTTTTC
* * *
45710016 AAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAAATTC
1 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAATTC
45710081 TGCTTTTCAA
66 TG-TTTTCAA
* *
45710091 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAATTC
45710156 TGTTTTC
66 TGTTTTC
45710163 TTCAATTTAT
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
74 5 0.07
75 62 0.93
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAATTC
TGTTTTCAA
Found at i:45710206 original size:503 final size:491
Alignment explanation
Indices: 45708953--45710587 Score: 1834
Period size: 503 Copynumber: 3.3 Consensus size: 491
45708943 TTTATCATCA
* * * * *
45708953 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACCTGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTC
* * *
45709018 TG----C-TCAATTTATGTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCA
66 TGTTTTCTTCAATTTA--TCTTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCA
* * * **
45709078 GGACACGCTAAGGTATTTTCAATTTCTATTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAG
129 GGGCACGCTGAGGTATTTTCAAATTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
* * * * **
45709142 TTGAGCCTCGGGGCACACTGAGGT-ATTGTCAATTT-TTGTGTTTTAATTTATG-T-TTC-AAAA
194 TTGAGCCTCAGGACACGCTGAGGTAATT-TCAATTTCTTCT-TTCCAATTTATGCTCTTCAAAAA
* * * * *** *
45709202 ATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCAAGTCAC-A--T-TGAGGT---ATTT-T-AT
257 ATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACAATTTCTGCTTTCCAATTTCTGCT
* * *
45709258 CATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTC
322 CTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
* * * * *
45709323 AATTTCTGTTTTAATTTCTGTGTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCT
387 AATTTCTG------TTTC--TG-CTC-AAAAAATCAACTCATATCGCGAGAGATGAGTTGAGCCT
* *
45709388 CAGG-T--CACGATGA-------C-----GTATTTTTAATTTCTGTTTTTC
442 C-GGCTCACACGCTGAGGTCTTTCAATTTCTATTTTTAATTTCTGTTTTTC
*
45709424 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTC
* *
45709489 TGTTTTCTTCAATTTATGTTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
66 TGTTTTCTTCAATTTATCTTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* *
45709554 GCACGCTGAGGTATTTTTAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
131 GCACGCTGAGGTATTTTCAAATTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * * *
45709619 GAGCCTCAGGGCACGCTGAGGTATTTTCGATTTCTTCTTTCCAATTTCTGCTCTTCAAAAAAATC
196 GAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTTCTTTCCAATTTATGCTCTTC-AAAAAATC
* *
45709684 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCGATTTCTTCTTTC
260 AACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCA--C------A------ATTTCTGCTTTC
45709749 CAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
311 CAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
45709814 GAGGTAATTTCAATTTCTG-TT-TG-TC-AAAAATCAACTCATATCGCGAGAGATGAGTTGAGCC
376 GAGGTAATTTCAATTTCTGTTTCTGCTCAAAAAATCAACTCATATCGCGAGAGATGAGTTGAGCC
* *
45709875 TCGGCTCACATGCTGAGGTCTTTTCAATTTCTATTTTTAATATCTGTTTTTC
441 TCGGCTCACACGCTGAGGTC-TTTCAATTTCTATTTTTAATTTCTGTTTTTC
45709927 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTC
*
45709992 TGTTTTCTTCAATTTATCTTTTTCAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCAGG
66 TGTTTTCTTCAATTTATCTTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
45710057 GCACGCTGAGGTATTTTCAAATTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
131 GCACGCTGAGGTATTTTCAAATTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
*
45710122 GAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT-TTTCTTCAATTTAT-CTTTTTC-AAAA
196 GAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT-TCTTTC--CAATTTATGC-TCTTCAAAAA
*
45710184 ATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACAATTTCTGCTTTCCAATTTCTGCT
257 ATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACAATTTCTGCTTTCCAATTTCTGCT
* *
45710249 CTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTC
322 CTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
*
45710314 AATTTCTGCTTTCCAATTTCTGCTCTTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGC
387 AATTTCTG--------TTTCTG--C-TC-AAAAAATCAACTCATATCGCGAGAGATGAGTTGAGC
* * **
45710379 CTCGGCTCACACGCTGAGGTCTTTCAATTTTTGTTTTTCAATTTCTGTTCGTC
440 CTCGGCTCACACGCTGAGGTCTTTCAATTTCTATTTTT-AATTTCTGTTTTTC
* * * *
45710432 -AAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGAGG-CACGCTGAGGTATTTTCAATTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACATGCTGAGGTAATTTCAATTT
* * * *
45710495 ATGTTTT-TTCAATTTATGC-TTTTCAAGAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC-
65 CTGTTTTCTTCAATTTAT-CTTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCA
* *
45710557 GGGTCACATGCCGAGGTATTTTCAAAATCTG
129 GGG-CAC--GCTGAGGTATTTTCAAATTCTG
45710588 TTTGGCAAAT
Statistics
Matches: 1013, Mismatches: 74, Indels: 120
0.84 0.06 0.10
Matches are distributed among these distances:
471 63 0.06
474 72 0.07
475 68 0.07
476 14 0.01
477 3 0.00
479 41 0.04
481 1 0.00
487 2 0.00
488 35 0.03
489 93 0.09
490 8 0.01
492 2 0.00
494 1 0.00
495 3 0.00
496 1 0.00
497 2 0.00
498 3 0.00
499 2 0.00
500 4 0.00
501 2 0.00
502 74 0.07
503 341 0.34
504 79 0.08
505 99 0.10
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.34
Consensus pattern (491 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTC
TGTTTTCTTCAATTTATCTTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
GCACGCTGAGGTATTTTCAAATTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTTCTTTCCAATTTATGCTCTTCAAAAAATCA
ACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACAATTTCTGCTTTCCAATTTCTGCTCTTC
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
TCTGTTTCTGCTCAAAAAATCAACTCATATCGCGAGAGATGAGTTGAGCCTCGGCTCACACGCTG
AGGTCTTTCAATTTCTATTTTTAATTTCTGTTTTTC
Found at i:45710329 original size:89 final size:86
Alignment explanation
Indices: 45710224--45710643 Score: 470
Period size: 88 Copynumber: 4.8 Consensus size: 86
45710214 CCTCAGGGCA
45710224 CAATTTCTGCTTTCCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 CAATTTCTGCTTTCCAATTTCTGCTCTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
45710289 CCTCAGGGCACGCTGAGGTATTTT
64 CCTC-GGGCACGCTGAGGTATTTT
*
45710313 CAATTTCTGCTTTCCAATTTCTGCTCTTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAG
1 CAATTTCTGCTTTCCAATTTCTGCTCTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* *
45710378 CCTCGGCTCACACGCTGAGGT-CTTT
64 CCTCGG---GCACGCTGAGGTATTTT
* * * * * *
45710403 CAATTTTTGTTTTTCAATTTCTGTTCGTC-AAAATCAACTCATATTGTGAGAGGTGAGTTGAGCC
1 CAATTTCTGCTTTCCAATTTCTGCTCTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
45710467 TCGAGGCACGCTGAGGTATTTT
66 TCG-GGCACGCTGAGGTATTTT
** * * * * * *
45710489 CAATTAATGTTTTTTCAATTTATGCTTTTCAAGAATCAACTCATATTACGAGAGGTGAGTTGAGC
1 CAATTTCTG-CTTTCCAATTTCTGCTCTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
45710554 CTCGGGTCACATGCCGAGGTATTTT
65 CTCGGG-CAC--GCTGAGGTATTTT
** * * * *
45710579 CAAAATCTG-TTTGGCAAATTCTG-TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
1 CAATTTCTGCTTT-CCAATTTCTGCTCTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
45710642 CT
65 CT
45710644 TTGCTCATGT
Statistics
Matches: 288, Mismatches: 32, Indels: 23
0.84 0.09 0.07
Matches are distributed among these distances:
85 11 0.04
86 10 0.03
87 54 0.19
88 83 0.29
89 75 0.26
90 44 0.15
91 11 0.04
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (86 bp):
CAATTTCTGCTTTCCAATTTCTGCTCTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
TCGGGCACGCTGAGGTATTTT
Found at i:45710458 original size:87 final size:85
Alignment explanation
Indices: 45710224--45710730 Score: 462
Period size: 89 Copynumber: 5.7 Consensus size: 85
45710214 CCTCAGGGCA
* * *
45710224 CAATTTCTGCTTTCCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 CAATTTCTGTTTTTCAATTTCTG-TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
45710289 CCTCAGGGCACGCTGAGGTATTTT
63 CCTC-GGACACGCTGAGGTATTTT
* * * *
45710313 CAATTTCTGCTTTCCAATTTCTGCTCTTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAG
1 CAATTTCTGTTTTTCAATTTCTG-TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
45710378 CCTCGGCTCACACGCTGAGGT-CTTT
63 CCTCGG---ACACGCTGAGGTATTTT
* * *
45710403 CAATTTTTGTTTTTCAATTTCTGTTCGTC-AAAATCAACTCATATTGTGAGAGGTGAGTTGAGCC
1 CAATTTCTGTTTTTCAATTTCTGTT-TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
45710467 TCGAGGCACGCTGAGGTATTTT
65 TCG-GACACGCTGAGGTATTTT
** * * *
45710489 CAATTAATGTTTTTTCAATTTATGCTTTTCAAGAATCAACTCATATTACGAGAGGTGAGTTGAGC
1 CAATTTCTG-TTTTTCAATTTCTG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* *
45710554 CTCGGGTCACATGCCGAGGTATTTT
64 CTC-GG--ACACGCTGAGGTATTTT
** ** * *
45710579 CAAAATCTGTTTGGCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 CAATTTCTGTTTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-
* ** * *
45710644 TTGCTCATGTGCTGAGCTATTTTT
65 TCGGACA--CGCTGAGGTA-TTTT
* * * * **
45710668 CAATTTCTGTTTTT-AATGTCTAGTTTTTAAAAGTCAATTCATATTGCGAGAAATGAGTTGAGC
1 CAATTTCTGTTTTTCAATTTCT-GTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
45710731 TCAGGATCAC
Statistics
Matches: 353, Mismatches: 48, Indels: 34
0.81 0.11 0.08
Matches are distributed among these distances:
85 11 0.03
86 12 0.03
87 51 0.14
88 92 0.26
89 132 0.37
90 44 0.12
91 11 0.03
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (85 bp):
CAATTTCTGTTTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
CGGACACGCTGAGGTATTTT
Found at i:45728538 original size:44 final size:44
Alignment explanation
Indices: 45728490--45728873 Score: 292
Period size: 45 Copynumber: 8.6 Consensus size: 44
45728480 CTTATCTATT
** * *
45728490 TGAAGTTGCAGTAAAGCGGGTTGAAGTAACAAGTCTTATCTCCC
1 TGAAGTTGCAGTGGAGCAGATTGAAGTAACAAGTCTTATCTCCC
* * * *
45728534 TGAAGTTGCAGTGGAGCAGACTGAAGATAGC-AGATCTTGTCTACC
1 TGAAGTTGCAGTGGAGCAGATTGAAG-TAACAAG-TCTTATCTCCC
* * * *
45728579 TGAAGTTGCAGTGGAGCAGACTGAAGATAGC-AGATCTTGTCTACC
1 TGAAGTTGCAGTGGAGCAGATTGAAG-TAACAAG-TCTTATCTCCC
* ** ** *
45728624 TGAAGTTGCAGTGGAGCAGATCGAAGCCACAAACCTTATCTCTC
1 TGAAGTTGCAGTGGAGCAGATTGAAGTAACAAGTCTTATCTCCC
* * ** * *
45728668 TGAAGTTGTAGTAGAGTGGGTTGAAATAACAAGTCTTATCTCCC
1 TGAAGTTGCAGTGGAGCAGATTGAAGTAACAAGTCTTATCTCCC
* * * * *
45728712 TGAAGTTGTAGTGGAGCAAACTGAAGATAGC-AGATCTTGTCTCCC
1 TGAAGTTGCAGTGGAGCAGATTGAAG-TAACAAG-TCTTATCTCCC
* ** *
45728757 TGAAGTTGCAGTGGAGCAGATCGAAGCCACAA-TCCTTATCTCTC
1 TGAAGTTGCAGTGGAGCAGATTGAAGTAACAAGT-CTTATCTCCC
* ** * **
45728801 TGAAGTTGCAGTTGAGCAGGATAAAAATACACAAACCTTATCTCCC
1 TGAAGTTGCAGTGGAGCA-GATTGAAGTA-ACAAGTCTTATCTCCC
*
45728847 TGAAGTTGCAGTGGAGCAG-TTGCAGTA
1 TGAAGTTGCAGTGGAGCAGATTGAAGTA
45728874 GAGCAGATTA
Statistics
Matches: 269, Mismatches: 61, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
43 1 0.00
44 114 0.42
45 124 0.46
46 30 0.11
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (44 bp):
TGAAGTTGCAGTGGAGCAGATTGAAGTAACAAGTCTTATCTCCC
Found at i:45728559 original size:21 final size:21
Alignment explanation
Indices: 45728533--45728604 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 21
45728523 TCTTATCTCC
45728533 CTGAAGTTGCAGTGGAGCAGA
1 CTGAAGTTGCAGTGGAGCAGA
* *** *
45728554 CTGAAGATAGCAGATCTTGTCTA-C
1 CTGAAG-TTGCAG-TGGAG-C-AGA
45728578 CTGAAGTTGCAGTGGAGCAGA
1 CTGAAGTTGCAGTGGAGCAGA
45728599 CTGAAG
1 CTGAAG
45728605 ATAGCAGATC
Statistics
Matches: 36, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
20 1 0.03
21 13 0.36
22 7 0.19
23 7 0.19
24 7 0.19
25 1 0.03
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.22
Consensus pattern (21 bp):
CTGAAGTTGCAGTGGAGCAGA
Found at i:45728581 original size:24 final size:24
Alignment explanation
Indices: 45728554--45728628 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
45728544 GTGGAGCAGA
45728554 CTGAAGATAGCAGATCTTGTCTAC
1 CTGAAGATAGCAGATCTTGTCTAC
* *** *
45728578 CTGAAG-TTGCAG-TGGAG-C-AGA
1 CTGAAGATAGCAGATCTTGTCTA-C
45728599 CTGAAGATAGCAGATCTTGTCTAC
1 CTGAAGATAGCAGATCTTGTCTAC
45728623 CTGAAG
1 CTGAAG
45728629 TTGCAGTGGA
Statistics
Matches: 36, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
20 1 0.03
21 7 0.19
22 7 0.19
23 7 0.19
24 13 0.36
25 1 0.03
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (24 bp):
CTGAAGATAGCAGATCTTGTCTAC
Found at i:45728589 original size:45 final size:45
Alignment explanation
Indices: 45728523--45728865 Score: 324
Period size: 45 Copynumber: 7.7 Consensus size: 45
45728513 AAGTAACAAG
45728523 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAGA
* *
45728568 TCTTGTCTACCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAGA
* * ** *
45728613 TCTTGTCTACCTGAAGTTGCAGTGGAGCAGA-TCGAAGCCA-CAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGATAGCAGA
* * * * ** ** *
45728657 CCTTATCTCTCTGAAGTTGTAGTAGAGTGGGTTGAA-ATAACA-A
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAGA
* *
45728700 GTCTTATCTCCCTGAAGTTGTAGTGGAGCAAACTGAAGATAGCAGA
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAGA
* **
45728746 TCTTGTCTCCCTGAAGTTGCAGTGGAGCAGA-TCGAAGCCA-CA-A
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGATAGCAGA
* * * * * *
45728789 TCCTTATCTCTCTGAAGTTGCAGTTGAGCAGGA-TAAAAATACACAAA
1 T-CTTATCTCCCTGAAGTTGCAGTGGAGCA-GACTGAAGATA-GCAGA
*
45728836 CCTTATCTCCCTGAAGTTGCAGTGGAGCAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAG
45728866 TTGCAGTAGA
Statistics
Matches: 246, Mismatches: 40, Indels: 24
0.79 0.13 0.08
Matches are distributed among these distances:
43 4 0.02
44 90 0.37
45 122 0.50
46 29 0.12
47 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAGA
Found at i:45728740 original size:133 final size:135
Alignment explanation
Indices: 45728524--45728864 Score: 465
Period size: 133 Copynumber: 2.5 Consensus size: 135
45728514 AGTAACAAGT
* * * * * * * *
45728524 CTTATCTCCCTGAAGTTGCAGTGGAGCA-GACTGAAGATA-GCAGATCTTGTCTACCTGAAGTTG
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGA-TAAAAATACACAAATCTTATCTCCCTGAAGTTG
*
45728587 CAGTGGAGCAGACTGAAGATAGCAGATCTTGTCTACCTGAAGTTGCAGTGGAGCAGATCGAAGCC
65 CAGTGGAGCAAACTGAAGATAGCAGATCTTGTCTACCTGAAGTTGCAGTGGAGCAGATCGAAGCC
45728652 ACAAAC
130 ACAAAC
* * * ** * *
45728658 CTTATCTCTCTGAAGTTGTAGTAGAG-TGGGTTGAAATA-ACAAGTCTTATCTCCCTGAAGTTGT
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACACAAATCTTATCTCCCTGAAGTTGC
*
45728721 AGTGGAGCAAACTGAAGATAGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCA
66 AGTGGAGCAAACTGAAGATAGCAGATCTTGTCTACCTGAAGTTGCAGTGGAGCAGATCGAAGCCA
*
45728786 CAATC
131 CAAAC
* *
45728791 CTTATCTCTCTGAAGTTGCAGTTGAGCAGGATAAAAATACACAAACCTTATCTCCCTGAAGTTGC
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACACAAATCTTATCTCCCTGAAGTTGC
45728856 AGTGGAGCA
66 AGTGGAGCA
45728865 GTTGCAGTAG
Statistics
Matches: 178, Mismatches: 26, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
133 115 0.65
134 32 0.18
135 31 0.17
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (135 bp):
CTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACACAAATCTTATCTCCCTGAAGTTGC
AGTGGAGCAAACTGAAGATAGCAGATCTTGTCTACCTGAAGTTGCAGTGGAGCAGATCGAAGCCA
CAAAC
Found at i:45728774 original size:178 final size:179
Alignment explanation
Indices: 45728430--45728858 Score: 553
Period size: 178 Copynumber: 2.4 Consensus size: 179
45728420 TGAAACCATA
* * * * * * ** * *
45728430 AATCCTTGTCGCTCTGATGTTGCAGTAGAACAGGATAAAAATATGCAAACCTTATCTATTTGAAG
1 AATCCTTATCTCTCTGAAGTTGCAGTGGAGCAGGATAAAAAGACACAAACCTTATCTCTCTGAAG
* *
45728495 TTGCAGTAAAGCGGGTTGAAGTAACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
66 TTGCAGTAAAGCGGGTTGAAATAACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAG
*
45728560 ATAGCAGATCTTGTCTACCTGAAGTTGCAGTGGAGCAGA-CTGAAGATAGC
131 ATAGCAGATCTTGTCTACCTGAAGTTGCAGTGGAGCAGATC-GAAGACA-C
* ** *
45728610 AGAT-CTTGTCTAC-CTGAAGTTGCAGTGGAGCA-GAT-CGAAGCCACAAACCTTATCTCTCTGA
1 A-ATCCTTATCT-CTCTGAAGTTGCAGTGGAGCAGGATAAAAAGACACAAACCTTATCTCTCTGA
* * * *
45728671 AGTTGTAGTAGAGTGGGTTGAAATAACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAAACTGA
64 AGTTGCAGTAAAGCGGGTTGAAATAACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGA
* *
45728736 AGATAGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCAC
129 AGATAGCAGATCTTGTCTACCTGAAGTTGCAGTGGAGCAGATCGAAGACAC
* * *
45728787 AATCCTTATCTCTCTGAAGTTGCAGTTGAGCAGGATAAAAATACACAAACCTTATCTCCCTGAAG
1 AATCCTTATCTCTCTGAAGTTGCAGTGGAGCAGGATAAAAAGACACAAACCTTATCTCTCTGAAG
45728852 TTGCAGT
66 TTGCAGT
45728859 GGAGCAGTTG
Statistics
Matches: 213, Mismatches: 29, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
176 3 0.01
177 26 0.12
178 125 0.59
179 33 0.15
180 23 0.11
181 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (179 bp):
AATCCTTATCTCTCTGAAGTTGCAGTGGAGCAGGATAAAAAGACACAAACCTTATCTCTCTGAAG
TTGCAGTAAAGCGGGTTGAAATAACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAG
ATAGCAGATCTTGTCTACCTGAAGTTGCAGTGGAGCAGATCGAAGACAC
Found at i:45728869 original size:14 final size:14
Alignment explanation
Indices: 45728850--45728879 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
45728840 ATCTCCCTGA
*
45728850 AGTTGCAGTGGAGC
1 AGTTGCAGTAGAGC
45728864 AGTTGCAGTAGAGC
1 AGTTGCAGTAGAGC
45728878 AG
1 AG
45728880 ATTAAGAGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.40, T:0.20
Consensus pattern (14 bp):
AGTTGCAGTAGAGC
Found at i:45740894 original size:79 final size:82
Alignment explanation
Indices: 45740783--45740967 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
45740773 GCTACTCGTT
* *
45740783 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
45740846 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
45740863 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
45740926 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
45740943 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45740968 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:45740967 original size:40 final size:40
Alignment explanation
Indices: 45740764--45740967 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
45740754 CGGAATTTAA
** *
45740764 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
45740804 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
45740844 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
45740883 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
45740923 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
45740963 CCGGA
1 CCGGA
45740968 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:45748835 original size:79 final size:78
Alignment explanation
Indices: 45748733--45748955 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
45748723 GCTCCTCGTT
* *
45748733 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
45748798 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
45748813 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
45748877 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
45748891 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
45748954 GA
63 GA
45748956 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 45 0.36
79 60 0.48
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:45748850 original size:39 final size:40
Alignment explanation
Indices: 45748733--45748955 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
45748723 GCTCCTCGTT
* *
45748733 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
45748773 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
45748813 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
45748852 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
45748891 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
45748932 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45748956 CATCATTCAA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 67 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:45752909 original size:3 final size:3
Alignment explanation
Indices: 45752901--45752953 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
45752891 ATTCAGTGAC
45752901 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
45752949 TCT TC
1 TCT TC
45752954 CTCTGTTAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:45753033 original size:21 final size:21
Alignment explanation
Indices: 45753009--45753050 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
45752999 CAACGTGGCA
45753009 AGTTAACTGGCCACGTCAGCT
1 AGTTAACTGGCCACGTCAGCT
*
45753030 AGTTAACTTGCCACGTCAGCT
1 AGTTAACTGGCCACGTCAGCT
45753051 GTTCTGTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (21 bp):
AGTTAACTGGCCACGTCAGCT
Found at i:45753149 original size:30 final size:31
Alignment explanation
Indices: 45753080--45753152 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
45753070 GGAAACTGTT
* *
45753080 AGTTAGTGACTGTTTTGTCACTTTTTTATAG
1 AGTTAGTGACTGTTTTGTCACTTTTTCATAA
* *
45753111 CGTTAGTGACTGTTTTGTTA-TTTTTCA-AA
1 AGTTAGTGACTGTTTTGTCACTTTTTCATAA
45753140 AGTTGAGTGACTG
1 AGTT-AGTGACTG
45753153 AAATGAAACC
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
29 4 0.11
30 14 0.39
31 18 0.50
ACGTcount: A:0.21, C:0.10, G:0.22, T:0.48
Consensus pattern (31 bp):
AGTTAGTGACTGTTTTGTCACTTTTTCATAA
Found at i:45758630 original size:21 final size:21
Alignment explanation
Indices: 45758604--45758645 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
45758594 GTCAATAACC
45758604 AAATGTTCACACAAATAGACA
1 AAATGTTCACACAAATAGACA
***
45758625 AAATGTTTTGACAAATAGACA
1 AAATGTTCACACAAATAGACA
45758646 TATATTCATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.50, C:0.14, G:0.12, T:0.24
Consensus pattern (21 bp):
AAATGTTCACACAAATAGACA
Found at i:45772479 original size:18 final size:20
Alignment explanation
Indices: 45772444--45772489 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
45772434 TATGAGAGAG
* *
45772444 AAAAAAAGTGCAACAAAATA
1 AAAAAAAATGCAACAAAAGA
45772464 AAAAAAAATG-AA-AAAAGA
1 AAAAAAAATGCAACAAAAGA
45772482 AAAGAAAA
1 AAA-AAAA
45772490 GTGTAAGCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 8 0.35
19 6 0.26
20 9 0.39
ACGTcount: A:0.78, C:0.04, G:0.11, T:0.07
Consensus pattern (20 bp):
AAAAAAAATGCAACAAAAGA
Found at i:45773107 original size:27 final size:26
Alignment explanation
Indices: 45773077--45773137 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
45773067 TAAAATTGAA
*
45773077 AAAAAAATGAAAAATATTTTAAAAATT
1 AAAAAAATGAAAAATATTAT-AAAATT
* * *
45773104 AAAAACATTAAAATTATTATAAAATT
1 AAAAAAATGAAAAATATTATAAAATT
*
45773130 ATAAAAAT
1 AAAAAAAT
45773138 ATTTTTTATA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
26 12 0.43
27 16 0.57
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (26 bp):
AAAAAAATGAAAAATATTATAAAATT
Found at i:45774608 original size:25 final size:27
Alignment explanation
Indices: 45774571--45774623 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
45774561 TCAAACATGC
45774571 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
45774597 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
45774623 A
1 A
45774624 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:45787398 original size:52 final size:52
Alignment explanation
Indices: 45787320--45788156 Score: 1656
Period size: 52 Copynumber: 16.1 Consensus size: 52
45787310 ATGAAATTCC
* *
45787320 TATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCAT
1 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
45787372 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
1 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
45787424 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
1 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
45787476 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
1 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
45787528 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
1 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
45787580 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
1 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
45787632 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
1 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
45787684 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
1 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
45787736 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
1 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
45787788 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
1 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
45787840 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
1 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
45787892 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
1 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
45787944 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
1 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
45787996 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
1 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
45788048 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
1 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
45788100 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
1 TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
45788152 TATCA
1 TATCA
45788157 ATTTGTATCA
Statistics
Matches: 783, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 783 1.00
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.34
Consensus pattern (52 bp):
TATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCAT
Found at i:45789390 original size:28 final size:28
Alignment explanation
Indices: 45789345--45789426 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
45789335 TGAGCAGCCT
* * *
45789345 AAATATCACAGCTTGTGTGAGCAAATTC
1 AAATATCACAACTCGTGTGAGAAAATTC
45789373 AAATATCACAACTCGTGTGAGAAAATTC
1 AAATATCACAACTCGTGTGAGAAAATTC
* * * *
45789401 AAATATTATAACTTGTGTGGGAAAAT
1 AAATATCACAACTCGTGTGAGAAAAT
45789427 CAATCCCATG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.29
Consensus pattern (28 bp):
AAATATCACAACTCGTGTGAGAAAATTC
Found at i:45796477 original size:27 final size:27
Alignment explanation
Indices: 45796425--45796498 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
45796415 ATTTTTTAAA
45796425 ATTTT-AAAATTGAAAAAAAATGAAAAAT
1 ATTTTAAAAATT--AAAAAAATGAAAAAT
* * *
45796453 ATTTTAAAAATTAAAAACATTAAAATT
1 ATTTTAAAAATTAAAAAAATGAAAAAT
* *
45796480 ATTAT-AAAATTATAAAAAT
1 ATTTTAAAAATTAAAAAAAT
45796499 ATTTTTTATA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
26 12 0.31
27 16 0.41
28 5 0.13
29 6 0.15
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (27 bp):
ATTTTAAAAATTAAAAAAATGAAAAAT
Found at i:45797779 original size:28 final size:28
Alignment explanation
Indices: 45797746--45797799 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
45797736 TGAGCAGCCT
45797746 AAATATCACAACTTGTGTGAGAAAATTC
1 AAATATCACAACTTGTGTGAGAAAATTC
* *
45797774 AAATATTATAACTTGTGTGAGAAAAT
1 AAATATCACAACTTGTGTGAGAAAAT
45797800 CAATCTCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.31
Consensus pattern (28 bp):
AAATATCACAACTTGTGTGAGAAAATTC
Found at i:45801904 original size:20 final size:19
Alignment explanation
Indices: 45801868--45801906 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
45801858 AATTTCAAAA
*
45801868 TTATAAAATTTGGAATTTT
1 TTATAAAATTTGAAATTTT
*
45801887 TTATAAATATTTTAAATTTT
1 TTATAAA-ATTTGAAATTTT
45801907 AAAAATTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (19 bp):
TTATAAAATTTGAAATTTT
Found at i:45801946 original size:20 final size:20
Alignment explanation
Indices: 45801885--45801938 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
45801875 ATTTGGAATT
*
45801885 TTTTATAAA-TATTTT-AAA
1 TTTTAAAAATTATTTTAAAA
45801903 TTTTAAAAATTATTTTAAAA
1 TTTTAAAAATTATTTTAAAA
*
45801923 TTTTGAAAATTATTTT
1 TTTTAAAAATTATTTT
45801939 GTAATTTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.25
19 6 0.19
20 18 0.56
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (20 bp):
TTTTAAAAATTATTTTAAAA
Found at i:45806673 original size:41 final size:41
Alignment explanation
Indices: 45806627--45806710 Score: 141
Period size: 41 Copynumber: 2.0 Consensus size: 41
45806617 GGCCAAGATT
45806627 CAGCAGGATATGAAAGACCAGATGCTAAAATAGCAGAAAAA
1 CAGCAGGATATGAAAGACCAGATGCTAAAATAGCAGAAAAA
* * *
45806668 CAGCAGGATATGAAAGATCAGATGCTAAAATCGCAGAAGAA
1 CAGCAGGATATGAAAGACCAGATGCTAAAATAGCAGAAAAA
45806709 CA
1 CA
45806711 TGATGAATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.49, C:0.15, G:0.23, T:0.13
Consensus pattern (41 bp):
CAGCAGGATATGAAAGACCAGATGCTAAAATAGCAGAAAAA
Found at i:45812587 original size:24 final size:24
Alignment explanation
Indices: 45812560--45812607 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
45812550 ATGATGAATA
*
45812560 AATTAAAAAATTCAATAAATTTAT
1 AATTAAAAAATTCAAAAAATTTAT
* * *
45812584 AATTATAATATTTAAAAAATTTAT
1 AATTAAAAAATTCAAAAAATTTAT
45812608 TTTTAAATAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (24 bp):
AATTAAAAAATTCAAAAAATTTAT
Found at i:45815076 original size:23 final size:23
Alignment explanation
Indices: 45815046--45815091 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
45815036 AATGTTAATG
45815046 TAGGTTAAACTAATACTCAGCTA
1 TAGGTTAAACTAATACTCAGCTA
45815069 TAGGTTAAACTAATACTCAGCTA
1 TAGGTTAAACTAATACTCAGCTA
45815092 AGTAAATTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.30
Consensus pattern (23 bp):
TAGGTTAAACTAATACTCAGCTA
Found at i:45817784 original size:23 final size:23
Alignment explanation
Indices: 45817734--45817786 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
45817724 TTTAGTCTGG
*
45817734 ACCTAAATAAACCAAACCAATCA
1 ACCTAAATAAACCAAACCAACCA
* *
45817757 ACCTAAATAAACCAAGCCAGCCA
1 ACCTAAATAAACCAAACCAACCA
*
45817780 GCCTAAA
1 ACCTAAA
45817787 CAAAAAACAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.51, C:0.32, G:0.06, T:0.11
Consensus pattern (23 bp):
ACCTAAATAAACCAAACCAACCA
Found at i:45819145 original size:28 final size:28
Alignment explanation
Indices: 45819112--45819169 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
45819102 TATGTTGTTC
** *
45819112 ATATTTGTATTTTTTTCGCTAGTTATTT
1 ATATTTGTACATTTTTCGCTACTTATTT
*
45819140 ATATTTGTACATTTTTCGCTCCTTATTT
1 ATATTTGTACATTTTTCGCTACTTATTT
45819168 AT
1 AT
45819170 TTATATTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.19, C:0.12, G:0.09, T:0.60
Consensus pattern (28 bp):
ATATTTGTACATTTTTCGCTACTTATTT
Found at i:45819276 original size:3 final size:3
Alignment explanation
Indices: 45819263--45819317 Score: 60
Period size: 3 Copynumber: 19.0 Consensus size: 3
45819253 ATTACCTTAT
** *
45819263 TTA TT- TTA TTA TTA TTA TGC TT- TGA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
45819309 TTG TTA TTA
1 TTA TTA TTA
45819318 CATTAGTATT
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
2 3 0.07
3 40 0.93
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:45821920 original size:47 final size:47
Alignment explanation
Indices: 45821828--45821920 Score: 105
Period size: 47 Copynumber: 2.0 Consensus size: 47
45821818 CTAAACAACC
* ** * *
45821828 ATAACTCTATATTCAATCATGATAATCATGATAATGTTTTTTAAATT
1 ATAACTCTATATTCAATCAAGATAATCATGATAAAATTATATAAATT
** **
45821875 ATAACTCTATATTCAATCAAGATAATTTTTTTAAAATTATATAAAT
1 ATAACTCTATATTCAATCAAGATAATCATGATAAAATTATATAAAT
45821921 ATTTTCTTTA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
47 37 1.00
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.44
Consensus pattern (47 bp):
ATAACTCTATATTCAATCAAGATAATCATGATAAAATTATATAAATT
Found at i:45821923 original size:36 final size:38
Alignment explanation
Indices: 45821851--45821923 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 38
45821841 CAATCATGAT
* **
45821851 AATCATGATAATGTTTTTTAAATTATAACTCTATATTC
1 AATCAAGATAATGTTTTTTAAATTATAACTAAATATTC
45821889 AATCAAGATAAT-TTTTTTAAAATTAT-A-TAAATATT
1 AATCAAGATAATGTTTTTT-AAATTATAACTAAATATT
45821924 TTCTTTAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
36 6 0.19
37 7 0.23
38 18 0.58
ACGTcount: A:0.42, C:0.07, G:0.04, T:0.47
Consensus pattern (38 bp):
AATCAAGATAATGTTTTTTAAATTATAACTAAATATTC
Found at i:45824206 original size:3 final size:3
Alignment explanation
Indices: 45824198--45824315 Score: 87
Period size: 3 Copynumber: 38.7 Consensus size: 3
45824188 AATTTAAAAT
* * *
45824198 TAA TAA TAA TAA TAA TAA TAA TACGC TAA TAA TGA TAA TAA TAA GAA
1 TAA TAA TAA TAA TAA TAA TAA TA--A TAA TAA TAA TAA TAA TAA TAA
* ** * * *
45824245 TAA TGA T-A TGT TAA TAA TAA T-A TGAA TAG TAA TAA AAGA TAA TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TA-A TAA TAA
* *
45824290 TAA TAA TAA TAA TAG TAA TAC TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
45824316 TTAAACTAAT
Statistics
Matches: 89, Mismatches: 20, Indels: 12
0.74 0.17 0.10
Matches are distributed among these distances:
2 4 0.04
3 79 0.89
4 4 0.04
5 2 0.02
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:45827165 original size:12 final size:12
Alignment explanation
Indices: 45827148--45827173 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
45827138 TTTGTTTAGT
45827148 ATGAAATATAAA
1 ATGAAATATAAA
45827160 ATGAAATATAAA
1 ATGAAATATAAA
45827172 AT
1 AT
45827174 TAATTAATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (12 bp):
ATGAAATATAAA
Found at i:45829822 original size:40 final size:40
Alignment explanation
Indices: 45829002--45829807 Score: 1535
Period size: 40 Copynumber: 20.1 Consensus size: 40
45828992 NNNNNNNNNN
45829002 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
45829042 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
45829082 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
45829122 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
45829162 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
45829202 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
45829242 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
45829282 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
45829322 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
45829362 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
45829402 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
45829442 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
45829482 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
45829522 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
45829562 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
45829602 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
45829642 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
45829682 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
* *
45829722 CATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAAT-TCCGGGCTAAGTCCCGAAGG
* * *
45829762 CATTTGTGCGAGTTACT-ATATACGGGCTAAGTCCCGAAGG
1 CATTTGTGCTAGTGACTAAT-TCCGGGCTAAGTCCCGAAGG
45829802 CATTTG
1 CATTTG
45829808 AGTGAGTAGC
Statistics
Matches: 762, Mismatches: 3, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
39 2 0.00
40 760 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGG
Found at i:45829930 original size:45 final size:45
Alignment explanation
Indices: 45829866--45829954 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 45
45829856 TGAGCGATCT
*
45829866 TGCTGTAATACTTTCAATTAATACGCTCGTAAAATCCGAACGATG
1 TGCTGTAATACTTTCAATTAATACGCTCGTAAAATCCCAACGATG
45829911 TGCTGTAATACTTTCAATTAATACGCTCGTAAAATCCCAACGAT
1 TGCTGTAATACTTTCAATTAATACGCTCGTAAAATCCCAACGAT
45829955 AAGGTATGTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.31
Consensus pattern (45 bp):
TGCTGTAATACTTTCAATTAATACGCTCGTAAAATCCCAACGATG
Found at i:45840683 original size:20 final size:20
Alignment explanation
Indices: 45840662--45840737 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
45840652 ACTGCGCTAT
* *
45840662 TGATGGCTTTGTGCCACTAT
1 TGATGGCTTTATGCCACTAC
**
45840682 TGATGGCTTTATGCTGCTAC
1 TGATGGCTTTATGCCACTAC
** *
45840702 TGATGGCTTCGTGCCGCTAC
1 TGATGGCTTTATGCCACTAC
*
45840722 TCATGGCTTTATGCCA
1 TGATGGCTTTATGCCA
45840738 TATATTGATA
Statistics
Matches: 45, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.14, C:0.24, G:0.25, T:0.37
Consensus pattern (20 bp):
TGATGGCTTTATGCCACTAC
Found at i:45840728 original size:40 final size:40
Alignment explanation
Indices: 45840657--45840735 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
45840647 GCACTACTGC
* * * *
45840657 GCTATTGATGGCTTTGTGCCACTATTGATGGCTTTATGCT
1 GCTACTGATGGCTTCGTGCCACTACTCATGGCTTTATGCT
*
45840697 GCTACTGATGGCTTCGTGCCGCTACTCATGGCTTTATGC
1 GCTACTGATGGCTTCGTGCCACTACTCATGGCTTTATGC
45840736 CATATATTGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.14, C:0.23, G:0.25, T:0.38
Consensus pattern (40 bp):
GCTACTGATGGCTTCGTGCCACTACTCATGGCTTTATGCT
Found at i:45841920 original size:24 final size:25
Alignment explanation
Indices: 45841892--45841938 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
45841882 TTTGGCCCAA
*
45841892 TTTTACTGAAATATG-AATTGAAGC
1 TTTTACTGAAATAAGTAATTGAAGC
* *
45841916 TTTTAGTGGAATAAGTAATTGAA
1 TTTTACTGAAATAAGTAATTGAA
45841939 CTTGGAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.38, C:0.04, G:0.19, T:0.38
Consensus pattern (25 bp):
TTTTACTGAAATAAGTAATTGAAGC
Found at i:45842120 original size:14 final size:14
Alignment explanation
Indices: 45842101--45842128 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
45842091 ACCTCGCTGA
45842101 CATATTTGGAGTTT
1 CATATTTGGAGTTT
45842115 CATATTTGGAGTTT
1 CATATTTGGAGTTT
45842129 TATTCTCGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.21, T:0.50
Consensus pattern (14 bp):
CATATTTGGAGTTT
Found at i:45843350 original size:26 final size:26
Alignment explanation
Indices: 45843321--45843372 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
45843311 AATAAAAGAA
45843321 AACATTCAATATTTCAATTTAATTAG
1 AACATTCAATATTTCAATTTAATTAG
* *
45843347 AACATTCAATATTTTAGTTTAATTAG
1 AACATTCAATATTTCAATTTAATTAG
45843373 CATTAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.10, G:0.06, T:0.44
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAG
Found at i:45844003 original size:171 final size:171
Alignment explanation
Indices: 45843756--45844093 Score: 640
Period size: 171 Copynumber: 2.0 Consensus size: 171
45843746 TTCCCCTAAC
* * *
45843756 AGTGATATGTTTGTGCCACAATGTAGAAATAATTATGCAAAGCGTAAAATCTTATAACCTTGTTG
1 AGTGATATATATGTGCCACAATGTAGAAATAATTATGCAAAGAGTAAAATCTTATAACCTTGTTG
45843821 TTGTTAAAAAGTTTTTATCACACTTATCATATTTGTAAAATGGAAAATGGCAACTAAATGATTGA
66 TTGTTAAAAAGTTTTTATCACACTTATCATATTTGTAAAATGGAAAATGGCAACTAAATGATTGA
45843886 AATTCAAAATTAATTCATCAACAATATTTCCCGTTCTTGCT
131 AATTCAAAATTAATTCATCAACAATATTTCCCGTTCTTGCT
*
45843927 AGTGATATATATGTGCCACAATGTAGAAATAATTATGCGAAGAGTAAAATCTTATAACCTTGTTG
1 AGTGATATATATGTGCCACAATGTAGAAATAATTATGCAAAGAGTAAAATCTTATAACCTTGTTG
45843992 TTGTTAAAAAGTTTTTATCACACTTATCATATTTGTAAAATGGAAAATGGCAACTAAATGATTGA
66 TTGTTAAAAAGTTTTTATCACACTTATCATATTTGTAAAATGGAAAATGGCAACTAAATGATTGA
45844057 AATTCAAAATTAATTCATCAACAATATTTCCCGTTCT
131 AATTCAAAATTAATTCATCAACAATATTTCCCGTTCT
45844094 AAAATTAAGT
Statistics
Matches: 163, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
171 163 1.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (171 bp):
AGTGATATATATGTGCCACAATGTAGAAATAATTATGCAAAGAGTAAAATCTTATAACCTTGTTG
TTGTTAAAAAGTTTTTATCACACTTATCATATTTGTAAAATGGAAAATGGCAACTAAATGATTGA
AATTCAAAATTAATTCATCAACAATATTTCCCGTTCTTGCT
Found at i:45845557 original size:12 final size:12
Alignment explanation
Indices: 45845540--45845601 Score: 56
Period size: 12 Copynumber: 5.0 Consensus size: 12
45845530 ATATAGTAAT
45845540 ATAAATCATATA
1 ATAAATCATATA
*
45845552 ATAAATAATATA
1 ATAAATCATATA
*
45845564 A-AAATATATATA
1 ATAAAT-CATATA
45845576 ATAAAATCTATATA
1 AT-AAATC-ATATA
45845590 ATATAAT-ATATA
1 ATA-AATCATATA
45845602 TAAGAAAGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
11 4 0.10
12 23 0.55
13 1 0.02
14 14 0.33
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAAATCATATA
Found at i:45845571 original size:8 final size:9
Alignment explanation
Indices: 45845536--45845604 Score: 52
Period size: 9 Copynumber: 7.3 Consensus size: 9
45845526 AAATATATAG
45845536 TAATATAAA
1 TAATATAAA
45845545 TCATATAATAAA
1 T-A-AT-ATAAA
45845557 TAATATAAA
1 TAATATAAA
*
45845566 -AATATATA
1 TAATATAAA
45845574 TAATA-AAA
1 TAATATAAA
*
45845582 TCTATATAATA
1 T-AATATAA-A
*
45845593 TAATATATA
1 TAATATAAA
45845602 TAA
1 TAA
45845605 GAAAGATAGA
Statistics
Matches: 48, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
8 10 0.21
9 17 0.35
10 10 0.21
11 5 0.10
12 6 0.12
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (9 bp):
TAATATAAA
Found at i:45845574 original size:24 final size:28
Alignment explanation
Indices: 45845506--45845604 Score: 95
Period size: 28 Copynumber: 3.7 Consensus size: 28
45845496 AAATAAAGTG
* *
45845506 TATAATATAATTTACA-AATAAAAT-ATA
1 TATAATATAATATATATAATAAAATCA-A
45845533 TAGTAATATAA-ATCATATAAT-AAAT-AA
1 TA-TAATATAATAT-ATATAATAAAATCAA
*
45845560 TATAA-A-AATATATATAATAAAATCTA
1 TATAATATAATATATATAATAAAATCAA
45845586 TATAATATAATATATATAA
1 TATAATATAATATATATAA
45845605 GAAAGATAGA
Statistics
Matches: 61, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
24 9 0.15
25 7 0.11
26 9 0.15
27 7 0.11
28 26 0.43
29 3 0.05
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (28 bp):
TATAATATAATATATATAATAAAATCAA
Found at i:45845587 original size:14 final size:14
Alignment explanation
Indices: 45845522--45845868 Score: 121
Period size: 14 Copynumber: 25.0 Consensus size: 14
45845512 ATAATTTACA
45845522 AATAAAATATATAGT
1 AATAAAATATATA-T
*
45845537 AATATAAAT-CATAT
1 AATA-AAATATATAT
45845551 AAT-AAATA-ATAT
1 AATAAAATATATAT
45845563 -A-AAAATATATAT
1 AATAAAATATATAT
*
45845575 AATAAAATCTATAT
1 AATAAAATATATAT
*
45845589 AATATAATATATAT
1 AATAAAATATATAT
* *
45845603 AAGAAAGATAGATAT
1 AATAAA-ATATATAT
*
45845618 TATAAGGAATAATATAT
1 AATAA--AAT-ATATAT
45845635 AATAAAATATAGTATGT
1 AATAAAATATA-TA--T
* *
45845652 AGTAAAA-ATACAT
1 AATAAAATATATAT
*
45845665 AA-ATAA-A-ATAT
1 AATAAAATATATAT
*
45845676 AATGAAATATGATAT
1 AATAAAATAT-ATAT
*
45845691 AATAAAA-ATATGT
1 AATAAAATATATAT
*
45845704 AA-AATA-ATA-AT
1 AATAAAATATATAT
45845715 AATAATAATATA-AT
1 AATAA-AATATATAT
* * *
45845729 AAT-AAGTACTTTTT
1 AATAAAATA-TATAT
45845743 CATATAAAA-ATATAGT
1 -A-ATAAAATATATA-T
*
45845759 AAT-ATATATA-AT
1 AATAAAATATATAT
*
45845771 AA-AAATATATACCACAT
1 AATAAA-ATAT---ATAT
*
45845788 AGTAAAATATATAT
1 AATAAAATATATAT
* * *
45845802 AACAGAATAGATAT
1 AATAAAATATATAT
*
45845816 AATAATAA-A-AAAT
1 AATAA-AATATATAT
45845829 AA-AAAATATA-AT
1 AATAAAATATATAT
*
45845841 AATAAAATAGATAAT
1 AATAAAATATAT-AT
*
45845856 AAAAAAATA-ATAT
1 AATAAAATATATAT
45845869 GTACTATTTA
Statistics
Matches: 250, Mismatches: 42, Indels: 82
0.67 0.11 0.22
Matches are distributed among these distances:
11 16 0.06
12 40 0.16
13 34 0.14
14 68 0.27
15 49 0.20
16 14 0.06
17 26 0.10
18 3 0.01
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (14 bp):
AATAAAATATATAT
Found at i:45845670 original size:41 final size:41
Alignment explanation
Indices: 45845625--45845726 Score: 111
Period size: 39 Copynumber: 2.5 Consensus size: 41
45845615 TATTATAAGG
* *
45845625 AATAATATATAATAAAATATAGTATGTAGTAAAAATACAT-A
1 AATAATATATAATAAAATATAG-ATATAATAAAAATACATAA
* * **
45845666 AATAAAATATAATGAAATAT-GATATAATAAAAATATGTAA
1 AATAATATATAATAAAATATAGATATAATAAAAATACATAA
45845706 AATAATA-ATAATAATAATATA
1 AATAATATATAATAA-AATATA
45845727 ATAATAAGTA
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
39 19 0.38
40 13 0.26
41 18 0.36
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.31
Consensus pattern (41 bp):
AATAATATATAATAAAATATAGATATAATAAAAATACATAA
Found at i:45845779 original size:15 final size:15
Alignment explanation
Indices: 45845759--45845868 Score: 51
Period size: 15 Copynumber: 7.6 Consensus size: 15
45845749 AAAATATAGT
45845759 AATATATATAATAAA
1 AATATATATAATAAA
*
45845774 AATATATACCACATAGTAA
1 AATATATA-TA-ATA--AA
* *
45845793 AATATATATAA-CAG
1 AATATATATAATAAA
*
45845807 AATAGATATAATAATA
1 AATATATATAATAA-A
45845823 AA-A-A-AT-A-AAA
1 AATATATATAATAAA
45845833 AATATA-ATAAT-AA
1 AATATATATAATAAA
*
45845846 AATAGATAATAA-AAA
1 AATATAT-ATAATAAA
45845861 AATA-ATAT
1 AATATATAT
45845869 GTACTATTTA
Statistics
Matches: 74, Mismatches: 8, Indels: 28
0.67 0.07 0.25
Matches are distributed among these distances:
10 3 0.04
11 3 0.04
12 4 0.05
13 12 0.16
14 14 0.19
15 20 0.27
16 3 0.04
17 4 0.05
18 1 0.01
19 10 0.14
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (15 bp):
AATATATATAATAAA
Found at i:45847786 original size:175 final size:174
Alignment explanation
Indices: 45847490--45848070 Score: 869
Period size: 175 Copynumber: 3.3 Consensus size: 174
45847480 GTAAACACGT
* * * * * * * * * *
45847490 GAAAGCCAAATCTGTTGTGTCTTCGATTTGCTCCTTATGAACACGAGGATGCCAAATCATCTCGG
1 GAAAGTCAAATCTGCTATGTCTTTGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
45847555 ATCTGCTTCAGTAAATCATCTGAAGGTTAGATAC-ACTATGTATCTGCTCTCCGTCGAAATGGAG
66 ATCTGCTTCAGTAAATCATCTGAAGGTTAGAT-CTACTATGTATCTGCTCTCCGTCGAAATGGAG
* *
45847619 ATGCTAGATCTGTTATCTTGGATCTGTTTTGGTGTGAGAACATCC
130 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
*
45847664 AAAAGTCAAATCTGCTATGTCTTTGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTTGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* *
45847729 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTATGTATCTACTCTCCGTCGAAATGGAG
66 ATCTGCTTCAGTA-AATCATCTGAAGGTTAGATCTACTATGTATCTGCTCTCCGTCGAAATGGAG
45847794 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
130 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
*
45847839 GAAAGTCAAATCTGCTATGTCTTTGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTTGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * *
45847904 ATCTACTTCAGTGAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCATCGAAATGGAG
66 ATCTGCTTCAGT-AAATCATCTGAAGGTTAGATCTACTATGTATCTGCTCTCCGTCGAAATGGAG
* * *
45847969 ATGCCAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAACATCT
130 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
* * * * *
45848014 GAAAGTCAGATCTACTTTGT-TTTCAGTTTTTTCCTTGTAAACACAAGAATGCCAAAT
1 GAAAGTCAAATCTGCTATGTCTTTGA-TTTGTTCCTTGTAAACACAAGAATGCCAAAT
45848071 TATATTTGAT
Statistics
Matches: 372, Mismatches: 31, Indels: 7
0.91 0.08 0.02
Matches are distributed among these distances:
174 72 0.19
175 299 0.80
176 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (174 bp):
GAAAGTCAAATCTGCTATGTCTTTGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
ATCTGCTTCAGTAAATCATCTGAAGGTTAGATCTACTATGTATCTGCTCTCCGTCGAAATGGAGA
TGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
Found at i:45855945 original size:15 final size:15
Alignment explanation
Indices: 45855903--45855945 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
45855893 ATAACTTTGA
*
45855903 ATGCAAATG-ATGCG
1 ATGCAAATGCATGAG
45855917 ATG-AAATGCTATGAG
1 ATGCAAATGC-ATGAG
45855932 ATGCAAATGCATGA
1 ATGCAAATGCATGA
45855946 ATACAAAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 5 0.20
14 3 0.12
15 11 0.44
16 6 0.24
ACGTcount: A:0.40, C:0.12, G:0.26, T:0.23
Consensus pattern (15 bp):
ATGCAAATGCATGAG
Found at i:45860096 original size:12 final size:12
Alignment explanation
Indices: 45860079--45860140 Score: 56
Period size: 12 Copynumber: 5.0 Consensus size: 12
45860069 ATATAGTAAT
45860079 ATAAATCATATA
1 ATAAATCATATA
*
45860091 ATAAATAATATA
1 ATAAATCATATA
*
45860103 A-AAATATATATA
1 ATAAAT-CATATA
45860115 ATAAAATCTATATA
1 AT-AAATC-ATATA
45860129 ATATAAT-ATATA
1 ATA-AATCATATA
45860141 TAAGAAAGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
11 4 0.10
12 23 0.55
13 1 0.02
14 14 0.33
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAAATCATATA
Found at i:45860110 original size:8 final size:9
Alignment explanation
Indices: 45860075--45860143 Score: 52
Period size: 9 Copynumber: 7.3 Consensus size: 9
45860065 AAATATATAG
45860075 TAATATAAA
1 TAATATAAA
45860084 TCATATAATAAA
1 T-A-AT-ATAAA
45860096 TAATATAAA
1 TAATATAAA
*
45860105 -AATATATA
1 TAATATAAA
45860113 TAATA-AAA
1 TAATATAAA
*
45860121 TCTATATAATA
1 T-AATATAA-A
*
45860132 TAATATATA
1 TAATATAAA
45860141 TAA
1 TAA
45860144 GAAAGATACA
Statistics
Matches: 48, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
8 10 0.21
9 17 0.35
10 10 0.21
11 5 0.10
12 6 0.12
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (9 bp):
TAATATAAA
Found at i:45860113 original size:24 final size:28
Alignment explanation
Indices: 45860045--45860143 Score: 95
Period size: 28 Copynumber: 3.7 Consensus size: 28
45860035 AAATAAAGTG
* *
45860045 TATAATATAATTTACA-AATAAAAT-ATA
1 TATAATATAATATATATAATAAAATCA-A
45860072 TAGTAATATAA-ATCATATAAT-AAAT-AA
1 TA-TAATATAATAT-ATATAATAAAATCAA
*
45860099 TATAA-A-AATATATATAATAAAATCTA
1 TATAATATAATATATATAATAAAATCAA
45860125 TATAATATAATATATATAA
1 TATAATATAATATATATAA
45860144 GAAAGATACA
Statistics
Matches: 61, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
24 9 0.15
25 7 0.11
26 9 0.15
27 7 0.11
28 26 0.43
29 3 0.05
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (28 bp):
TATAATATAATATATATAATAAAATCAA
Found at i:45860126 original size:14 final size:14
Alignment explanation
Indices: 45860061--45860262 Score: 95
Period size: 14 Copynumber: 14.4 Consensus size: 14
45860051 ATAATTTACA
45860061 AATAAAATATATAGT
1 AATAAAATATATA-T
*
45860076 AATATAAAT-CATAT
1 AATA-AAATATATAT
45860090 AAT-AAATA-ATAT
1 AATAAAATATATAT
45860102 -A-AAAATATATAT
1 AATAAAATATATAT
*
45860114 AATAAAATCTATAT
1 AATAAAATATATAT
*
45860128 AATATAATATATAT
1 AATAAAATATATAT
* *
45860142 AAGAAAGATACAT-T
1 AATAAA-ATATATAT
*
45860156 -ATAAGGAATAATAGAT
1 AATAA--AAT-ATATAT
45860172 AATAAAATATAGTATCT
1 AATAAAATATA-TA--T
** *
45860189 GGTAAGAATACATA-
1 AATAA-AATATATAT
45860203 AAT-AAA-A-ATAT
1 AATAAAATATATAT
* *
45860214 AATGAAATATGATGT
1 AATAAAATAT-ATAT
45860229 AATAAAA-ATATAT
1 AATAAAATATATAT
*
45860242 AATATAATAATAATAT
1 AATAAAAT-AT-ATAT
45860258 AATAA
1 AATAA
45860263 GTACTTTTTT
Statistics
Matches: 142, Mismatches: 21, Indels: 47
0.68 0.10 0.22
Matches are distributed among these distances:
10 3 0.02
11 10 0.07
12 17 0.12
13 15 0.11
14 39 0.27
15 30 0.21
16 13 0.09
17 10 0.07
18 5 0.04
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.32
Consensus pattern (14 bp):
AATAAAATATATAT
Found at i:45860258 original size:44 final size:46
Alignment explanation
Indices: 45860203--45860301 Score: 114
Period size: 44 Copynumber: 2.2 Consensus size: 46
45860193 AGAATACATA
*
45860203 AATAAAAATATAATGAAATA-TGATGTA-ATAAAAATATA-TAATAT
1 AATAATAATATAAT-AAATACTGATGTATATAAAAATATAGTAATAT
* ** *
45860247 AATAATAATATAATAAGTACTTTTTTATATAAAAATATAGTAATAT
1 AATAATAATATAATAAATACTGATGTATATAAAAATATAGTAATAT
45860293 ATATAATAA
1 A-ATAATAA
45860302 AAATATACAC
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
43 4 0.09
44 17 0.37
45 11 0.24
46 7 0.15
47 7 0.15
ACGTcount: A:0.58, C:0.01, G:0.05, T:0.36
Consensus pattern (46 bp):
AATAATAATATAATAAATACTGATGTATATAAAAATATAGTAATAT
Found at i:45860378 original size:27 final size:26
Alignment explanation
Indices: 45860331--45860398 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 26
45860321 AAATATATAT
*
45860331 ATAACAAAATAGAT-ATAATAATAAAAA
1 ATAAAAAAATA-ATAAT-ATAATAAAAA
* *
45860358 ATAAAAAATATAATAATATAATAGATA
1 ATAAAAAA-ATAATAATATAATAAAAA
45860385 ATAAAAAAATAATA
1 ATAAAAAAATAATA
45860399 TGTACTATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
26 6 0.17
27 25 0.69
28 5 0.14
ACGTcount: A:0.71, C:0.01, G:0.03, T:0.25
Consensus pattern (26 bp):
ATAAAAAAATAATAATATAATAAAAA
Found at i:45863293 original size:26 final size:26
Alignment explanation
Indices: 45863257--45863307 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
45863247 ATTAAAATAA
45863257 AACATTCAATATTTCAATTTAATTAG
1 AACATTCAATATTTCAATTTAATTAG
* * *
45863283 AACATTGAATATTTTAGTTTAATTA
1 AACATTCAATATTTCAATTTAATTA
45863308 ACATTAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAG
Found at i:45863918 original size:283 final size:283
Alignment explanation
Indices: 45863405--45864257 Score: 1514
Period size: 283 Copynumber: 3.0 Consensus size: 283
45863395 ATATCACTTA
* * * ** *
45863405 AATAAG-GTTCTGGCCAAATTTTACTTAAATATGAGTGGAAGCTTTTAATGGAATAAGTAATGGA
1 AATAAGCGTTCTGGCCTAATTTTACTAAAATATGAATGGAAGCTTTTTGTGGAATAAGTAATAGA
*
45863469 ACTTGGAAAATGAAAAATTCTCTTAGAGAGTGAAATTGGAAACAACAAATGACGTTACATTTTTA
66 TCTTGGAAAATGAAAAATTCTCTTAGAGAGTGAAATTGGAAACAACAAATGACGTTACATTTTTA
*
45863534 TAACTCTCGTAGGTATTGCCCAAATAATGAATAGGATTTGGTTTTTATATAAATTGAACCTTTTT
131 TAACTCTAGTAGGTATTGCCCAAATAATGAATAGGATTTGGTTTTTATATAAATTGAACCTTTTT
45863599 TAACAGGGAGTATGTGGGACGTACATCGTCGACATATTTGGAGTTTCATTCTTTATCTTTATAAA
196 TAACAGGGAGTATGTGGGACGTACATCGTCGACATATTTGGAGTTTCATTCTTTATCTTTATAAA
45863664 AACAAGTGATTCAAAGGAAGAAG
261 AACAAGTGATTCAAAGGAAGAAG
45863687 AATAAGCGTTCTGGCCTAATTTTACTAAAATATGAATGGAAGCTTTTTGTGGAATAAGTAATAGA
1 AATAAGCGTTCTGGCCTAATTTTACTAAAATATGAATGGAAGCTTTTTGTGGAATAAGTAATAGA
45863752 TCTTGGAAAATGAAAAATTCTCTTAGAGAGTGAAATTGGAAACAACAAATGACGTTACATTTTTA
66 TCTTGGAAAATGAAAAATTCTCTTAGAGAGTGAAATTGGAAACAACAAATGACGTTACATTTTTA
45863817 TAACTCTAGTAGGTATTGCCCAAATAATGAATAGGATTTGGTTTTTATATAAATTGAACCTTTTT
131 TAACTCTAGTAGGTATTGCCCAAATAATGAATAGGATTTGGTTTTTATATAAATTGAACCTTTTT
45863882 TAACAGGGAGTATGTGGGACGTACATCGTCGACATATTTGGAGTTTCATTCTTTATCTTTATAAA
196 TAACAGGGAGTATGTGGGACGTACATCGTCGACATATTTGGAGTTTCATTCTTTATCTTTATAAA
45863947 AACAAGTGATTCAAAGGAAGAAG
261 AACAAGTGATTCAAAGGAAGAAG
45863970 AATAAGCGTTCTGGCCTAATTTTACTAAAATATGAATGGAAGCTTTTTGTGGAATAAGTAATAGA
1 AATAAGCGTTCTGGCCTAATTTTACTAAAATATGAATGGAAGCTTTTTGTGGAATAAGTAATAGA
45864035 TCTTGGAAAATGAAAAATTCTCTTAGAGAGTGAAATTGGAAACAACAAATGACGTTACATTTTTA
66 TCTTGGAAAATGAAAAATTCTCTTAGAGAGTGAAATTGGAAACAACAAATGACGTTACATTTTTA
45864100 TAACTCTAGTAGGTATTGCCCAAATAATGAATAGGATTTGGTTTTTATATAAATTGAACCTTTTT
131 TAACTCTAGTAGGTATTGCCCAAATAATGAATAGGATTTGGTTTTTATATAAATTGAACCTTTTT
* * * * * * * *
45864165 TAATAAGGAGAATGT-GCACGTACGTCG-CTAACATATTTGGAGTTTCATTCTTGATCTTGATAA
196 TAACAGGGAGTATGTGGGACGTACATCGTC-GACATATTTGGAGTTTCATTCTTTATCTTTATAA
* *
45864228 AAACAAGTAATTTAAAGGAAGAAG
260 AAACAAGTGATTCAAAGGAAGAAG
45864252 AATAAG
1 AATAAG
45864258 GAAATCAAGT
Statistics
Matches: 551, Mismatches: 18, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
281 1 0.00
282 75 0.14
283 475 0.86
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.34
Consensus pattern (283 bp):
AATAAGCGTTCTGGCCTAATTTTACTAAAATATGAATGGAAGCTTTTTGTGGAATAAGTAATAGA
TCTTGGAAAATGAAAAATTCTCTTAGAGAGTGAAATTGGAAACAACAAATGACGTTACATTTTTA
TAACTCTAGTAGGTATTGCCCAAATAATGAATAGGATTTGGTTTTTATATAAATTGAACCTTTTT
TAACAGGGAGTATGTGGGACGTACATCGTCGACATATTTGGAGTTTCATTCTTTATCTTTATAAA
AACAAGTGATTCAAAGGAAGAAG
Found at i:45867553 original size:26 final size:26
Alignment explanation
Indices: 45867524--45867573 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
45867514 AATAAAAGAA
45867524 AACATTCAATATTTCAATTTAATTCT
1 AACATTCAATATTTCAATTTAATTCT
45867550 AACATTCAATATTTCAATTTAATT
1 AACATTCAATATTTCAATTTAATT
45867574 AGCATTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.46
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTCT
Found at i:45871360 original size:26 final size:26
Alignment explanation
Indices: 45871324--45871407 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
45871314 CATGAAATTC
45871324 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
45871350 TTATCATGAAACATTTACCTAACACA
1 TTATCATGAAACATTTACCTAACCCA
* *
45871376 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
45871402 TTATCA
1 TTATCA
45871408 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:45874030 original size:28 final size:26
Alignment explanation
Indices: 45873938--45874049 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
45873928 AAGAAGCGTC
* * *
45873938 CTGGTGGCTATGCCACAATTAACTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
45873965 CTGGTGGCTCCGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
45873992 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
45874020 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
45874046 CTGG
1 CTGG
45874050 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.67
28 17 0.23
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:45874044 original size:54 final size:54
Alignment explanation
Indices: 45873938--45874049 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
45873928 AAGAAGCGTC
* *
45873938 CTGGTGGCTATGCCACAATTAACTGATCTGGTGGCTCCGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTAACTGATCTGGTGACTCCGCCACATATATCTGTT
* * * * *
45873992 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTAACTG-ATCTGGTGACTCCGCCACATATATCTGTT
45874046 CTGG
1 CTGG
45874050 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTAACTGATCTGGTGACTCCGCCACATATATCTGTT
Found at i:45876060 original size:26 final size:26
Alignment explanation
Indices: 45876031--45876082 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
45876021 AATAAAAGAA
45876031 AACATTCAATATTTCAATGTAATTAG
1 AACATTCAATATTTCAATGTAATTAG
*
45876057 AACATTCAATATTTCAATTTAATTAG
1 AACATTCAATATTTCAATGTAATTAG
45876083 CATTAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (26 bp):
AACATTCAATATTTCAATGTAATTAG
Found at i:45877274 original size:26 final size:26
Alignment explanation
Indices: 45877245--45877295 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
45877235 CAATAAAAGA
45877245 TAACATTCAATATTTCAATTTAATTC
1 TAACATTCAATATTTCAATTTAATTC
* *
45877271 TAACTTTCAATATTTCAGTTTAATT
1 TAACATTCAATATTTCAATTTAATT
45877296 AGCATTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.14, G:0.02, T:0.49
Consensus pattern (26 bp):
TAACATTCAATATTTCAATTTAATTC
Found at i:45878647 original size:71 final size:71
Alignment explanation
Indices: 45878563--45878705 Score: 250
Period size: 71 Copynumber: 2.0 Consensus size: 71
45878553 ACATGAACTT
* *
45878563 GATGTTTATAATAATGATATTTGTGTCAATTTGAACAATGTGAAAAAATATGTAGTGCTCGATTA
1 GATGTTTATAATAATGATATTTGTGTCAATTTAAACAACGTGAAAAAATATGTAGTGCTCGATTA
45878628 GAGATG
66 GAGATG
* *
45878634 GATGTTTATAATAATGATATTTGTGTCAATTTAAACAACGTGAAACAATATGTAGTGCTCGATTT
1 GATGTTTATAATAATGATATTTGTGTCAATTTAAACAACGTGAAAAAATATGTAGTGCTCGATTA
45878699 GAGATG
66 GAGATG
45878705 G
1 G
45878706 TTATCATGTT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 68 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (71 bp):
GATGTTTATAATAATGATATTTGTGTCAATTTAAACAACGTGAAAAAATATGTAGTGCTCGATTA
GAGATG
Found at i:45883688 original size:26 final size:26
Alignment explanation
Indices: 45883659--45883708 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
45883649 AATAAAAGAA
45883659 AACATTCAATATTTCAATTTAATTCT
1 AACATTCAATATTTCAATTTAATTCT
*
45883685 AACATTCAATATTTCAGTTTAATT
1 AACATTCAATATTTCAATTTAATT
45883709 AGCATTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.38, C:0.14, G:0.02, T:0.46
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTCT
Found at i:45885232 original size:26 final size:26
Alignment explanation
Indices: 45885203--45885252 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
45885193 AATAAAAGAA
45885203 AACATTCAATATTTCAATTTAATTCT
1 AACATTCAATATTTCAATTTAATTCT
*
45885229 AACATTCAATATTTCAGTTTAATT
1 AACATTCAATATTTCAATTTAATT
45885253 AGCATTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.38, C:0.14, G:0.02, T:0.46
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTCT
Found at i:45886897 original size:193 final size:192
Alignment explanation
Indices: 45886569--45886954 Score: 720
Period size: 193 Copynumber: 2.0 Consensus size: 192
45886559 TGAAACAATA
*
45886569 TGTAGTGCTCGATTTGAGATGGTTATCATGTTCCGGTGCTATAAAATTAAAAACAATGGCATGTA
1 TGTAGTGCTCGATTTGAGATGGTTATCATGTTCCAGTGCTATAAAATTAAAAACAATGGCATGTA
45886634 TAAAATCATTGTGTATTAAGTAATGGCTTCTATAGAACCATTTAATTTCCGTACAACTAAATATA
66 TAAAATCATTGTGTATTAAGTAATGGCTTCTATAGAACCATTTAATTTCCGTACAACTAAATATA
45886699 ATTTATGTAGGCTTTAAATTTAATGACACATTTTAATGAAGCTTTCGGAACAATATCAAAAC
131 ATTTATGTAGGCTTTAAATTTAATGACACATTTTAATGAAGCTTTCGGAACAATATCAAAAC
* *
45886761 TGTAGTGCTCGATTTGAGAATGGTTATCGA-GTTCTAGTGCTATAAAATTAAAAATAATGGCATG
1 TGTAGTGCTCGATTTGAG-ATGGTTATC-ATGTTCCAGTGCTATAAAATTAAAAACAATGGCATG
45886825 TATAAAATCATTGTGTATTAAGTAATGGCTTCTATAGAACCATTTAATTTCCGTACAACTAAATA
64 TATAAAATCATTGTGTATTAAGTAATGGCTTCTATAGAACCATTTAATTTCCGTACAACTAAATA
45886890 TAATTTATGTAGGCTTTAAATTTAATGACACATTTTAATGAAGCTTTCGGAACAATATCAAAAC
129 TAATTTATGTAGGCTTTAAATTTAATGACACATTTTAATGAAGCTTTCGGAACAATATCAAAAC
45886954 T
1 T
45886955 AATGACAAAA
Statistics
Matches: 189, Mismatches: 3, Indels: 3
0.97 0.02 0.02
Matches are distributed among these distances:
192 18 0.10
193 170 0.90
194 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (192 bp):
TGTAGTGCTCGATTTGAGATGGTTATCATGTTCCAGTGCTATAAAATTAAAAACAATGGCATGTA
TAAAATCATTGTGTATTAAGTAATGGCTTCTATAGAACCATTTAATTTCCGTACAACTAAATATA
ATTTATGTAGGCTTTAAATTTAATGACACATTTTAATGAAGCTTTCGGAACAATATCAAAAC
Found at i:45896579 original size:26 final size:26
Alignment explanation
Indices: 45896533--45896585 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
45896523 TCAAACATGC
*
45896533 ATTTAGGTCAATTTAACCTTAGGGGT
1 ATTTAGGTCAATTTAACCTTAAGGGT
* *
45896559 ATTTCGGT-AATTTATCTCTTAAGGGT
1 ATTTAGGTCAATTTAAC-CTTAAGGGT
45896585 A
1 A
45896586 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.42
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCTTAAGGGT
Found at i:45898059 original size:26 final size:26
Alignment explanation
Indices: 45898029--45898084 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
45898019 TGAAATGCCC
45898029 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
45898055 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
45898081 ATCA
1 ATCA
45898085 ATTTTTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:45899262 original size:26 final size:26
Alignment explanation
Indices: 45899233--45899284 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
45899223 AATATAAGAA
45899233 AACATTCAATATTTCAATTTAATTAG
1 AACATTCAATATTTCAATTTAATTAG
*
45899259 AACATTCAATATTTCAGTTTAATTAG
1 AACATTCAATATTTCAATTTAATTAG
45899285 CATTAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.06, T:0.42
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAG
Found at i:45904422 original size:616 final size:616
Alignment explanation
Indices: 45903250--45911505 Score: 11298
Period size: 616 Copynumber: 13.4 Consensus size: 616
45903240 NTTCTAACAA
* * *
45903250 GTTTCCTGAAAAGTTGACTGGTTTACCACCAAACATGAAGTTGAGTTTAGTATTAAGATCCATCA
1 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCA
* *
45903315 TGGTATTGCACAGTGTGCATTGCAACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGTT
66 TGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGAT
*
45903380 TTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGTGTGCACCAG
131 TTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAG
* * * *
45903445 TTTT-TTTGAGAAGAAGAAGGATGATACGATGCAAATATGTTATTAGTTCTTTTGGTGATAGTGT
196 TTTTGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGT
45903509 GGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATC
261 GGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATC
45903574 GTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGG
326 GTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGG
*
45903639 CTAAGGTAGATTTTGAGATGAAACTAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTT
391 CTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTT
*
45903704 GTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGGTGATAGG
456 GTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAGG
*
45903769 AAAAGGGTGTGAACCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGG
521 AAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGG
* *
45903834 ATATTCTCACGGTTAAGGATTCTTCAAACGT
586 ATATTCTCACGGTTAAGGATTCTCCTAACGT
* *
45903865 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTTAGTTTAGTATTAAGTTCCATCA
1 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCA
* *
45903930 TGGTATTGCACAGTGTGCATTGCAACCTATAGCATGACACCAAAAGAGTTCAAGGAGTTAAAGAT
66 TGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGAT
*
45903995 TTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTATGTAGGGTGCACCAG
131 TTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAG
*
45904060 TTTTGTTTGTGAAGAAGAAAGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGT
196 TTTTGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGT
45904125 GGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATC
261 GGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATC
45904190 GTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGG
326 GTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGG
*
45904255 CTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGGAATAGTGACGGGTTGGAAATTTTTGTT
391 CTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTT
45904320 GTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAGG
456 GTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAGG
45904385 AAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGG
521 AAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGG
45904450 ATATTCTCACGGTTAAGGATTCTCCTAACGT
586 ATATTCTCACGGTTAAGGATTCTCCTAACGT
45904481 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCA
1 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCA
*
45904546 TGGTATTGCACAGTGTGTATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGAT
66 TGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGAT
* * * *
45904611 TTAGTTTCAAGATTTTCTTAATAGAAGGTTCATTCGACCGAGTGTACCTCTATAGGGTGCACCAG
131 TTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAG
*
45904676 TTTTGTTCGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGT
196 TTTTGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGT
45904741 GGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATC
261 GGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATC
45904806 GTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGG
326 GTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGG
45904871 CTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTT
391 CTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTT
* *
45904936 GTTGGTGAAAGACCGCGATTAATGTCCAATGTGGCTTCAACTATGAAAGCTGAGAAGATGATAGG
456 GTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAGG
*
45905001 AAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATTCAGTAAGTAAGGATTTGAGAGTTCAGG
521 AAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGG
45905066 ATATTCTCACGGTTAAGGATTCTCCTAACGT
586 ATATTCTCACGGTTAAGGATTCTCCTAACGT
* *
45905097 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGGGTTTAGTATTATGCTCCATC
1 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATC
* * * * *
45905162 ATAGTATTGCACAGTGTGTATTGTGACCTATAGCATGACACCAAGAGAGCTCAAGGAGTTCAAGA
65 ATGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGA
* * *** *
45905227 TTTAGTTTCAAGAGTTCCTTAAAAGAAGGTTCATTCGACCGAGTGTATCTATGTAATATTCACCA
130 TTTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCA
* *
45905292 GTTTTGTTTGCGAAGAAGAAGGATGGTACGATGCAGATATGATATTAGTTCCTTTGGTGATAGTG
195 GTTTTGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTG
* *
45905357 TGGAAGTGGATAAAAGTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGAT
260 TGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGAT
*
45905422 CGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTTG-TGTAGTGAGCATAA
325 CGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTG-AGTGAGCATAA
* * * **
45905486 GGCTAAGGTAGATTTTGAGATGAAACTATTTACTTTTAGGAATAGTGATGGGTTCAAAATTTTTG
389 GGCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTG
*
45905551 TTGTTGGTGAAAGACCGAGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATA
454 TTGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATA
45905616 GGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCA
519 GGAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCA
45905681 GGATATTCTCACGGTTAAGGATTCTCCTAACGT
584 GGATATTCTCACGGTTAAGGATTCTCCTAACGT
*
45905714 GTTTCCTGAAAAGTTGTCTGGTTTACCTCCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATC
1 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATC
* *
45905779 AAGGTATTGCACAGTGTGTATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGA
65 ATGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGA
* * *
45905844 TTTAGTTTCAAGATTTTCTTAATAGAAGGTTCATTCGACCGAGTGTACCTCTGTAGGGTGCACCA
130 TTTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCA
* * *
45905909 TTTTTGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGATCCTTTGGTGACAGTG
195 GTTTTGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTG
*
45905974 TGCAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGAT
260 TGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGAT
45906039 CGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAG
325 CGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAG
45906104 GCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGT
390 GCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGT
*
45906169 TGTTGGTGATAGACCGGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAG
455 TGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAG
* *
45906234 GAAAAGTTTGTGAACCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTTAGAGTTCAG
520 GAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAG
* *
45906299 GATATTCTCACGGTTAAGGATTCTTCTAACGG
585 GATATTCTCACGGTTAAGGATTCTCCTAACGT
* * *
45906331 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAGGCATGAAGTTGAGTTTACTATTAAGATCCATCA
1 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCA
*
45906396 TGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACGAAAAGAGCTCAAGGAGTTAAAGAT
66 TGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGAT
45906461 TTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAG
131 TTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAG
* *
45906526 TTTTGTTTGTGAAGAAGAACGATGGTACGATGCAGATATGTTATTAGATCCTTTGGTGATAGTGT
196 TTTTGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGT
45906591 GGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATC
261 GGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATC
45906656 GTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGG
326 GTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGG
45906721 CTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTT
391 CTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTT
* *
45906786 GTTGGTGAAAGACCGCGATTAATGTCCAATGTGGCTTCAACTATGAAAGCTGAGAAGATGATAGG
456 GTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAGG
45906851 AAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGG
521 AAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGG
45906916 ATATTCTCACGGTTAAGGATTCTCCTAACGT
586 ATATTCTCACGGTTAAGGATTCTCCTAACGT
45906947 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAGACCATGAAGTTGAGTTTAGTATTAAGCTCCATC
1 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAGA-CATGAAGTTGAGTTTAGTATTAAGCTCCATC
45907012 ATGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGA
65 ATGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGA
45907077 TTTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCA
130 TTTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCA
45907142 GTTTTGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTG
195 GTTTTGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTG
45907207 TGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGAT
260 TGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGAT
45907272 CGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAG
325 CGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAG
45907337 GCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGT
390 GCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGT
*
45907402 TGTTGGTGAAAGACCGGGATTAATGTCCAATTTGGTTTCAACTATGAAAGCTGAGAAGATGATAG
455 TGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAG
* * * ** * ** *
45907467 GAAAAGGTTGTGAACCTTACTTGAAAAG-TTGTCTGGTTTA-CCA-CCAG-AA-CA--TGA-AGT
520 GAAAAGGTTGTGAACCTTACTT----AGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGT
* * ** * * **
45907524 TCAGTGTAGTATTACGCTCCATCAAGGTATTGC-AC-AGTGT
581 TCAG-G-A-TATT-CTCACGGTTAAGG-ATT-CTCCTAACGT
* ** * ** ** * * * *
45907564 GTATTGC-GACCTA-TAG-CAT-G-ACACCAAAAGAGCTCAAGGAGTTAAAGATATAGT-TTCAA
1 GT-TTCCTGA-AAAGTTGTC-TGGTTTACCACCAGA---CATGAAGTT-GAG-TTTAGTATT--A
* * * * * * * * *
45907623 GAGTTCC-T--T--AATAG-A-AG-GTTCATT-CGA---GTAG-ATGTC-CCATTATG-GTTCAA
56 -AGCTCCATCATGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCA-AAAGAGCTCAA
* * * * ** * * * ** ** * * *
45907673 GG-G---CACATTT--TCTCTATTGAT-CGT-ATGGAATTTTTGTTCTACGGTATTATGTTAT-T
119 GGAGTTAAAGATTTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCG-A--GTG-TATCT
* * * * * * * * * *
45907729 CT-T-GGTATGGA-CTG-GTTG--AGTG-AGCAGAAGG---CTA--AGGTAG--AT-TT-TGAGT
180 CTGTAGG-GTGCACCAGTTTTGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGT
* ** *
45907778 TCC--T--T-A-A---TAGAAG-G--T-TCATTCGA--GTAGATGTCCCATTATGGTTCAAGGGC
244 TCCTTTGGTGATAGTGTGGAAGTGAATAAAATT-TATTGTAGATGTCCCATTATGGTTCAAGGGC
* *
45907828 ACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTATTATGTTATTCTTGGTATGGACT
308 ACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACT
* * * * *
45907893 GGTTGAGTGAGCAGAAGGCTAAGGTAGATTTTGAGTTCCTTAATA-GAAGGTT-CATTCGAGTAG
373 GGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAG---ATGAA-ACGAA--TTAC-TTTGAGGA-
* * * * * * * * *
45907956 AT-GTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGT
430 ATAGT--GA-T-GGGTT----GG-A-AATTT-T-TGTTG-TTG-GT-GAA----AG-AC--CGGG
* * * * ** * * * * * * ** * *
45908020 ATT-ATGT-TATTCTTGGTATGGACTGGTTG--AG-TGAGCAGAAGGCTAAGGTAGATTTTGAGT
473 ATTAATGTCCAAT-GTGGTTTCAACT--ATGAAAGCTGAGAAG-ATGAT-AGGAAAAGGTTGTGA
* * * * * * ** * *
45908080 TCCTTAATAGAAGGTTCAT-TCGAGTAGATGTCCCA-TTA-T--GG--TTCA-AGGGCA-CATTT
533 ACCTTACT--TAGCTT-ATAT-GA-TAAAT-T--CAGTTAGTAAGGATTTGAGAGTTCAGGATAT
* * * * *
45908136 TCTCTATTGATCGTATGGAATTTTTGTTCT-ACGGTATTAT
590 TCTC-A-CGGT--TAAGG-A---TTCTCCTAAC-G-----T
* ** * * * ** * * * * *
45908176 GTTATTCTTG-GTA-TGGACTGGTTGAGTGAGCAGA-AGGCTAAGGTAGATTTTGAGTTCCTTAA
1 G-T-TTCCTGAAAAGTTGTCTGGTTTA-CCACCAGACATG--AA-GTTGAGTTT-AG-T-ATTAA
* * * * ** * ** ** * * **
45908238 --T--A-GAAGGTTCATT-CGAGTAGATGTCCCATTATG-GTTCAAGGGCACATTTTC-TCTATT
57 GCTCCATCATGG-T-ATTGC-A-CAG-TGT-GCA-T-TGCGACCTATAG--CA-TGACACCAAAA
* * * *** * * * * * *
45908295 GATCGT-ATGGAATTTTTG-TTCTACGGTATT-ATGTTA-TT-CTTGGTATGGACTGGTTGAGT-
111 GAGC-TCAAGGAGTTAAAGATT-TA--GT-TTCAAG--AGTTCCTT--AATAGA-AGGTTCATTC
* * * * * ** * *
45908354 GAGCAGAAGGCTAAGGTAGAT-TTTG-A-GATGAAACGAG--TTACTT-TGAGGAA-TAGTGATA
166 GA-CCG-A-G-T---GT--ATCTCTGTAGGGTG-CACCAGTTTTGTTTGTGAAGAAGAAG-GAT-
** * ** * * * ****** * * * *
45908412 GGTTGGA--AATTTTTGTTGTTGGTGAAAAAGGCTAAGGTAGATTTTG-AGTTCCTTAATAGAAG
219 GGTACGATGCAGATATGTTATTAGTTCCTTTGG-T--GATAG-TGTGGAAG----TGAATA-AA-
* *
45908474 GTTCATTCGAGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATGGAATT
274 ATTTATT---GTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATCGTATGGAATT
* *
45908539 TTTGTTCTACGGTATTATGTTATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGA
336 TTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGA
* * *
45908604 TTTTGAGATGAAACGAGTTACTTTGAGGAATAGTGATAGGTTGGAAATTTTTGTTGTTGGTTAAA
401 TTTTGAGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTTGTTGGTGAAA
* * *
45908669 GACCGGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATGGGATAAGGTTTT
466 GACCGGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAGGAAAAGGTTGT
*
45908734 GAACCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTAAGGATATTCTCAC
531 GAACCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGGATATTCTCAC
*
45908799 GATTAAGGATTCTCCTAACGT
596 GGTTAAGGATTCTCCTAACGT
45908820 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCA
1 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCA
*
45908885 TGGTATTGCACAGTGTGTATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGAT
66 TGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGAT
45908950 TTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAG
131 TTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAG
* *
45909015 TTTTGTTTGTGAAGAAGAAGGATGGTACGATGCATATATGTTATTAGTTCCTTTGGTTATAGTGT
196 TTTTGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGT
45909080 GGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATC
261 GGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATC
***
45909145 GTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTTAATGAGTGAGCATAAGG
326 GTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGG
* *
45909210 CTAAGGTAGATTTTGAGATGAAACGTATTACTTTGAGGAATAGTGATGGGTTAGAAATTTTTGTT
391 CTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTT
**
45909275 GTTGGTCTAAGACCGGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAGG
456 GTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAGG
* * *
45909340 AAAAGGTTGTGAACCTTACTTATCTTATATGATAAATTCAGTTAGTAAGTATTTAAGAGTTCAGG
521 AAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGG
45909405 ATATTCTCACGGTTAAGGATTCTCCTAACGT
586 ATATTCTCACGGTTAAGGATTCTCCTAACGT
*
45909436 GTTTCCTGAAATGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCA
1 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCA
* * *
45909501 TGGTATTGCACAGTGTGTATTGCGGCCTATAGCATGACACCAAAAGAGCTGAAGGAGTTAAAGAT
66 TGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGAT
* * * **
45909566 TTAGTTTCACGATTTTCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCATTAG
131 TTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAG
*
45909631 TTTTGTTTGTGAAGATGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGT
196 TTTTGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGT
* * *
45909696 GGAAGTGAATAAAATTTAATGTTGATGTCCCATTATGGTTCAAGGGCACATTTTCTTTATTGATC
261 GGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATC
45909761 GTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGG
326 GTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGG
45909826 CTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTT
391 CTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTT
* * *
45909891 GTTTGTGAAAGACCGGGATTCATGTCCAATGTGGTTTCAACTATGAAAGCTGAGCAGATGATAGG
456 GTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAGG
* * *
45909956 AAAAGGTTGTGAACCTTACTTAGCTTGTATGATAAATTCAGTTAGTAAGGATTTGAGAATTCA-T
521 AAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGG
45910020 ATTATTCTCACGGTTAAGGATTCTCCTAACGT
586 A-TATTCTCACGGTTAAGGATTCTCCTAACGT
45910052 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATC
1 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATC
*
45910117 ATGGTATTGCACAGTGTGCATTGCGACCTACAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGA
65 ATGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGA
* * *
45910182 TTTAGTTTCAAGAGGTCCTTAATTGAAGGTTCATTCGACCGAGTATATCTCTGTAGGGTGCA-CA
130 TTTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCA
*
45910246 GTTTTGTTTGTGAAGAAGAAGAATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTG
195 GTTTTGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTG
*
45910311 TGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTAAAGGGCACATTTTCTCTATTGAT
260 TGGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGAT
* * *
45910376 TGTATGGAATTTTTGTTCTACGATTTTATGTGATTCTTGGTATGGACTGGTTGATTGAGCATAAG
325 CGTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAG
*
45910441 GCTAAGGTAGATTTTGAGATGAAATGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGT
390 GCTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGT
* *
45910506 TGTTGGTGAAAGACCAGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATGG
455 TGTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAG
* *
45910571 GATAAGGTTGTGAATCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAG
520 GAAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAG
45910636 GATATTCTCACGGTTAAGGATTCTCCTAACGT
585 GATATTCTCACGGTTAAGGATTCTCCTAACGT
*
45910668 GTTTCCTGAAAAGTTGTCTGGTTTACCCCCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCA
1 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCA
* * *
45910733 TGGTATTGCACAGTGTGCATTGTGACCTATAGCATGACAACAAAAGAGCTCAAGGGGTTAAAGAT
66 TGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGAT
* *
45910798 TTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGCATCTCTGTAGGGTGCACGAG
131 TTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAG
* *
45910863 TTTTGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTTATATTGT
196 TTTTGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGT
*
45910928 GGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGAACATTTTCTCTATTGATC
261 GGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATC
45910993 GTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGG
326 GTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGG
* * *
45911058 CTAAGGTAGATTTTAAGATGAAATGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTTTT
391 CTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTT
45911123 GTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAGG
456 GTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAGG
45911188 AAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGG
521 AAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGG
* *
45911253 ATATTCTCACGATTAAGGATTCTCCTGACGT
586 ATATTCTCACGGTTAAGGATTCTCCTAACGT
45911284 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAGAACATGAAGTTGAGTTTAGTATTAAGCTCCATC
1 GTTTCCTGAAAAGTTGTCTGGTTTACCACCAG-ACATGAAGTTGAGTTTAGTATTAAGCTCCATC
* *
45911349 ATGGTATTGCACAGTGTGTATTGCGACCTATAGCATGGCACCAAAAGAGCTCAAGGAGTTAAAGA
65 ATGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGA
* * *
45911414 TTTAGTTTCAAGAGTTCCTTAATAGAAGGTTGATTCGACCGAGTGTATCGCTGTATGGTGCACCA
130 TTTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCA
*
45911479 GTTTTGTTTGTGAAGAAGAATGATGGT
195 GTTTTGTTTGTGAAGAAGAAGGATGGT
45911506 CTGATCCAGT
Statistics
Matches: 6809, Mismatches: 579, Indels: 504
0.86 0.07 0.06
Matches are distributed among these distances:
573 124 0.02
574 3 0.00
575 2 0.00
576 6 0.00
577 3 0.00
578 15 0.00
579 2 0.00
580 1 0.00
581 2 0.00
582 5 0.00
583 1 0.00
585 1 0.00
586 2 0.00
587 8 0.00
588 6 0.00
589 3 0.00
590 4 0.00
591 6 0.00
592 1 0.00
593 5 0.00
596 8 0.00
597 4 0.00
598 11 0.00
599 39 0.01
600 33 0.00
601 17 0.00
602 5 0.00
603 12 0.00
604 6 0.00
605 3 0.00
606 4 0.00
607 11 0.00
608 6 0.00
609 3 0.00
611 3 0.00
612 12 0.00
613 24 0.00
614 12 0.00
615 358 0.05
616 3450 0.51
617 2014 0.30
618 19 0.00
619 13 0.00
620 13 0.00
621 14 0.00
622 3 0.00
623 5 0.00
624 10 0.00
625 8 0.00
626 10 0.00
627 11 0.00
628 16 0.00
629 4 0.00
630 15 0.00
631 8 0.00
632 4 0.00
633 9 0.00
634 4 0.00
635 16 0.00
636 4 0.00
637 5 0.00
638 6 0.00
639 8 0.00
640 5 0.00
641 11 0.00
642 16 0.00
643 17 0.00
644 13 0.00
645 1 0.00
646 4 0.00
647 8 0.00
648 5 0.00
649 11 0.00
650 5 0.00
651 2 0.00
652 5 0.00
653 12 0.00
654 5 0.00
655 10 0.00
656 24 0.00
657 27 0.00
658 9 0.00
659 1 0.00
662 1 0.00
663 2 0.00
664 1 0.00
665 2 0.00
666 5 0.00
667 1 0.00
668 4 0.00
669 3 0.00
670 4 0.00
674 4 0.00
675 1 0.00
676 2 0.00
677 2 0.00
678 11 0.00
679 4 0.00
680 5 0.00
683 126 0.02
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (616 bp):
GTTTCCTGAAAAGTTGTCTGGTTTACCACCAGACATGAAGTTGAGTTTAGTATTAAGCTCCATCA
TGGTATTGCACAGTGTGCATTGCGACCTATAGCATGACACCAAAAGAGCTCAAGGAGTTAAAGAT
TTAGTTTCAAGAGTTCCTTAATAGAAGGTTCATTCGACCGAGTGTATCTCTGTAGGGTGCACCAG
TTTTGTTTGTGAAGAAGAAGGATGGTACGATGCAGATATGTTATTAGTTCCTTTGGTGATAGTGT
GGAAGTGAATAAAATTTATTGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCTATTGATC
GTATGGAATTTTTGTTCTACGGTTTTATGTGATTCTTGGTATGGACTGGTTGAGTGAGCATAAGG
CTAAGGTAGATTTTGAGATGAAACGAATTACTTTGAGGAATAGTGATGGGTTGGAAATTTTTGTT
GTTGGTGAAAGACCGGGATTAATGTCCAATGTGGTTTCAACTATGAAAGCTGAGAAGATGATAGG
AAAAGGTTGTGAACCTTACTTAGCTTATATGATAAATTCAGTTAGTAAGGATTTGAGAGTTCAGG
ATATTCTCACGGTTAAGGATTCTCCTAACGT
Found at i:45907897 original size:151 final size:151
Alignment explanation
Indices: 45907623--45908380 Score: 1516
Period size: 151 Copynumber: 5.0 Consensus size: 151
45907613 ATAGTTTCAA
45907623 GAGTTCCTTAATAGAAGGTTCATTCGAGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCT
1 GAGTTCCTTAATAGAAGGTTCATTCGAGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCT
45907688 ATTGATCGTATGGAATTTTTGTTCTACGGTATTATGTTATTCTTGGTATGGACTGGTTGAGTGAG
66 ATTGATCGTATGGAATTTTTGTTCTACGGTATTATGTTATTCTTGGTATGGACTGGTTGAGTGAG
45907753 CAGAAGGCTAAGGTAGATTTT
131 CAGAAGGCTAAGGTAGATTTT
45907774 GAGTTCCTTAATAGAAGGTTCATTCGAGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCT
1 GAGTTCCTTAATAGAAGGTTCATTCGAGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCT
45907839 ATTGATCGTATGGAATTTTTGTTCTACGGTATTATGTTATTCTTGGTATGGACTGGTTGAGTGAG
66 ATTGATCGTATGGAATTTTTGTTCTACGGTATTATGTTATTCTTGGTATGGACTGGTTGAGTGAG
45907904 CAGAAGGCTAAGGTAGATTTT
131 CAGAAGGCTAAGGTAGATTTT
45907925 GAGTTCCTTAATAGAAGGTTCATTCGAGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCT
1 GAGTTCCTTAATAGAAGGTTCATTCGAGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCT
45907990 ATTGATCGTATGGAATTTTTGTTCTACGGTATTATGTTATTCTTGGTATGGACTGGTTGAGTGAG
66 ATTGATCGTATGGAATTTTTGTTCTACGGTATTATGTTATTCTTGGTATGGACTGGTTGAGTGAG
45908055 CAGAAGGCTAAGGTAGATTTT
131 CAGAAGGCTAAGGTAGATTTT
45908076 GAGTTCCTTAATAGAAGGTTCATTCGAGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCT
1 GAGTTCCTTAATAGAAGGTTCATTCGAGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCT
45908141 ATTGATCGTATGGAATTTTTGTTCTACGGTATTATGTTATTCTTGGTATGGACTGGTTGAGTGAG
66 ATTGATCGTATGGAATTTTTGTTCTACGGTATTATGTTATTCTTGGTATGGACTGGTTGAGTGAG
45908206 CAGAAGGCTAAGGTAGATTTT
131 CAGAAGGCTAAGGTAGATTTT
45908227 GAGTTCCTTAATAGAAGGTTCATTCGAGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCT
1 GAGTTCCTTAATAGAAGGTTCATTCGAGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCT
45908292 ATTGATCGTATGGAATTTTTGTTCTACGGTATTATGTTATTCTTGGTATGGACTGGTTGAGTGAG
66 ATTGATCGTATGGAATTTTTGTTCTACGGTATTATGTTATTCTTGGTATGGACTGGTTGAGTGAG
45908357 CAGAAGGCTAAGGTAGATTTT
131 CAGAAGGCTAAGGTAGATTTT
45908378 GAG
1 GAG
45908381 ATGAAACGAG
Statistics
Matches: 607, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
151 607 1.00
ACGTcount: A:0.24, C:0.13, G:0.25, T:0.38
Consensus pattern (151 bp):
GAGTTCCTTAATAGAAGGTTCATTCGAGTAGATGTCCCATTATGGTTCAAGGGCACATTTTCTCT
ATTGATCGTATGGAATTTTTGTTCTACGGTATTATGTTATTCTTGGTATGGACTGGTTGAGTGAG
CAGAAGGCTAAGGTAGATTTT
Found at i:45908612 original size:230 final size:230
Alignment explanation
Indices: 45908209--45908664 Score: 903
Period size: 230 Copynumber: 2.0 Consensus size: 230
45908199 GAGTGAGCAG
45908209 AAGGCTAAGGTAGATTTTGAGTTCCTTAATAGAAGGTTCATTCGAGTAGATGTCCCATTATGGTT
1 AAGGCTAAGGTAGATTTTGAGTTCCTTAATAGAAGGTTCATTCGAGTAGATGTCCCATTATGGTT
45908274 CAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTATTATGTTATTCTTGGT
66 CAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTATTATGTTATTCTTGGT
45908339 ATGGACTGGTTGAGTGAGCAGAAGGCTAAGGTAGATTTTGAGATGAAACGAGTTACTTTGAGGAA
131 ATGGACTGGTTGAGTGAGCAGAAGGCTAAGGTAGATTTTGAGATGAAACGAGTTACTTTGAGGAA
45908404 TAGTGATAGGTTGGAAATTTTTGTTGTTGGTGAAA
196 TAGTGATAGGTTGGAAATTTTTGTTGTTGGTGAAA
45908439 AAGGCTAAGGTAGATTTTGAGTTCCTTAATAGAAGGTTCATTCGAGTAGATGTCCCATTATGGTT
1 AAGGCTAAGGTAGATTTTGAGTTCCTTAATAGAAGGTTCATTCGAGTAGATGTCCCATTATGGTT
45908504 CAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTATTATGTTATTCTTGGT
66 CAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTATTATGTTATTCTTGGT
*
45908569 ATGGACTGGTTGAGTGAGCATAAGGCTAAGGTAGATTTTGAGATGAAACGAGTTACTTTGAGGAA
131 ATGGACTGGTTGAGTGAGCAGAAGGCTAAGGTAGATTTTGAGATGAAACGAGTTACTTTGAGGAA
45908634 TAGTGATAGGTTGGAAATTTTTGTTGTTGGT
196 TAGTGATAGGTTGGAAATTTTTGTTGTTGGT
45908665 TAAAGACCGG
Statistics
Matches: 225, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
230 225 1.00
ACGTcount: A:0.26, C:0.10, G:0.27, T:0.38
Consensus pattern (230 bp):
AAGGCTAAGGTAGATTTTGAGTTCCTTAATAGAAGGTTCATTCGAGTAGATGTCCCATTATGGTT
CAAGGGCACATTTTCTCTATTGATCGTATGGAATTTTTGTTCTACGGTATTATGTTATTCTTGGT
ATGGACTGGTTGAGTGAGCAGAAGGCTAAGGTAGATTTTGAGATGAAACGAGTTACTTTGAGGAA
TAGTGATAGGTTGGAAATTTTTGTTGTTGGTGAAA
Found at i:45916278 original size:28 final size:28
Alignment explanation
Indices: 45916215--45916620 Score: 663
Period size: 28 Copynumber: 14.5 Consensus size: 28
45916205 ATATTAAGTC
* *
45916215 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45916242 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
45916270 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45916298 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45916326 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45916354 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
45916382 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45916410 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
45916438 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45916466 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45916494 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
45916522 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45916550 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* * *
45916578 CGCACACTTAGTGCTGTACA-ATTTAAACC
1 CGCACACTTAGTGC--TACATAATCAAACT
45916607 CGCACACTTAGTGC
1 CGCACACTTAGTGC
45916621 CAATCTCATG
Statistics
Matches: 364, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
27 22 0.06
28 318 0.87
29 20 0.05
30 4 0.01
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:45920085 original size:18 final size:18
Alignment explanation
Indices: 45920034--45920085 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 18
45920024 CACCACGTTG
*
45920034 TGGATAAACCACACATCATTG
1 TGGATAAA--ACAC-TCATTA
* *
45920055 TGGATGAACCACTCATTA
1 TGGATAAAACACTCATTA
45920073 TGGATAAAACACT
1 TGGATAAAACACT
45920086 AGTAATAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
18 16 0.62
19 3 0.12
21 7 0.27
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.25
Consensus pattern (18 bp):
TGGATAAAACACTCATTA
Found at i:45921265 original size:18 final size:17
Alignment explanation
Indices: 45921221--45921259 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
45921211 AATATAGTGT
*
45921221 AAAGAAAAGAAAAAGAA
1 AAAGAAAATAAAAAGAA
45921238 AAAGAAAATAAAAA-AA
1 AAAGAAAATAAAAAGAA
45921254 AAAGAA
1 AAAGAA
45921260 TAAATAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 8 0.38
17 13 0.62
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.03
Consensus pattern (17 bp):
AAAGAAAATAAAAAGAA
Found at i:45923590 original size:46 final size:46
Alignment explanation
Indices: 45923523--45923614 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
45923513 TTCATTTTTA
45923523 AAGTATAACTATTGGCTCTTAGTAATATGATGAAGAAATTGACATT
1 AAGTATAACTATTGGCTCTTAGTAATATGATGAAGAAATTGACATT
45923569 AAGTATAACTATTGGCTCTTAGTAATATGATGAAGAAATTGACATT
1 AAGTATAACTATTGGCTCTTAGTAATATGATGAAGAAATTGACATT
45923615 CTTATTGATT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (46 bp):
AAGTATAACTATTGGCTCTTAGTAATATGATGAAGAAATTGACATT
Found at i:45927895 original size:25 final size:25
Alignment explanation
Indices: 45927867--45927970 Score: 68
Period size: 25 Copynumber: 4.2 Consensus size: 25
45927857 CATGGAAATC
45927867 CTTTATGGTGAATTCTCTAGAAAGT
1 CTTTATGGTGAATTCTCTAGAAAGT
* ** * *
45927892 CTTTGTGGAAAATTCTTTGGAAAG-
1 CTTTATGGTGAATTCTCTAGAAAGT
* * *
45927916 CTTTTGTGGTGAATTCTTTAGACA-T
1 C-TTTATGGTGAATTCTCTAGAAAGT
* * * *
45927941 CCTCTATAGCGAATTCTCTAGAAAGC
1 -CTTTATGGTGAATTCTCTAGAAAGT
45927967 CTTT
1 CTTT
45927971 GTGGCGTGTT
Statistics
Matches: 58, Mismatches: 17, Indels: 8
0.70 0.20 0.10
Matches are distributed among these distances:
24 1 0.02
25 56 0.97
26 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.39
Consensus pattern (25 bp):
CTTTATGGTGAATTCTCTAGAAAGT
Found at i:45932083 original size:27 final size:27
Alignment explanation
Indices: 45932048--45932180 Score: 142
Period size: 27 Copynumber: 4.9 Consensus size: 27
45932038 ACATTCAGAA
* *
45932048 TTTGTCACAAAGGC-ATCACTTTTAGAG
1 TTTGCCACAAAGGCTAT-TCTTTTAGAG
* *
45932075 ATCGCCACAAAGGCTATTCTTTTAGAG
1 TTTGCCACAAAGGCTATTCTTTTAGAG
* *
45932102 TTTACCACAAAGGCTATTCTTTCAGAG
1 TTTGCCACAAAGGCTATTCTTTTAGAG
*
45932129 TTTGCCACAAAGGTTATTCTTTTCAGAG
1 TTTGCCACAAAGGCTATTCTTTT-AGAG
** * *
45932157 TTCACCGCAAAGGTTATTCTTTTA
1 TTTGCCACAAAGGCTATTCTTTTA
45932181 TGTCATGTTT
Statistics
Matches: 90, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
27 64 0.71
28 26 0.29
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
TTTGCCACAAAGGCTATTCTTTTAGAG
Found at i:45932167 original size:28 final size:28
Alignment explanation
Indices: 45932079--45932179 Score: 143
Period size: 27 Copynumber: 3.7 Consensus size: 28
45932069 TTAGAGATCG
45932079 CCACAAAGGCTATTCTTTT-AGAGTTTA
1 CCACAAAGGCTATTCTTTTCAGAGTTTA
*
45932106 CCACAAAGGCTATTC-TTTCAGAGTTTG
1 CCACAAAGGCTATTCTTTTCAGAGTTTA
* *
45932133 CCACAAAGGTTATTCTTTTCAGAGTTCA
1 CCACAAAGGCTATTCTTTTCAGAGTTTA
* *
45932161 CCGCAAAGGTTATTCTTTT
1 CCACAAAGGCTATTCTTTT
45932180 ATGTCATGTT
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
26 3 0.04
27 36 0.54
28 28 0.42
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.37
Consensus pattern (28 bp):
CCACAAAGGCTATTCTTTTCAGAGTTTA
Found at i:45938371 original size:24 final size:25
Alignment explanation
Indices: 45938343--45938391 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
45938333 AGAAATAATC
* *
45938343 TTTCAATTAAACTCTGTTTA-TTTA
1 TTTCAATCAAACTCTGATTAGTTTA
45938367 TTTCAATCAAACTCTGATTAGTTTA
1 TTTCAATCAAACTCTGATTAGTTTA
45938392 GATTATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.49
Consensus pattern (25 bp):
TTTCAATCAAACTCTGATTAGTTTA
Found at i:45953360 original size:19 final size:19
Alignment explanation
Indices: 45953336--45953375 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
45953326 AACAAAGCTG
45953336 ATAATCAACATGCACTTTT
1 ATAATCAACATGCACTTTT
45953355 ATAATCAACATGCACTTTT
1 ATAATCAACATGCACTTTT
45953374 AT
1 AT
45953376 CAAGCCTAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.20, G:0.05, T:0.38
Consensus pattern (19 bp):
ATAATCAACATGCACTTTT
Found at i:45963059 original size:22 final size:21
Alignment explanation
Indices: 45963030--45963072 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
45963020 CATTAAATAC
45963030 CCAAAACCCTAACTCTAAAAA
1 CCAAAACCCTAACTCTAAAAA
* *
45963051 CCAATAACCCTAATTTTAAAAA
1 CCAA-AACCCTAACTCTAAAAA
45963073 AACCTAGAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (21 bp):
CCAAAACCCTAACTCTAAAAA
Found at i:45963912 original size:9 final size:9
Alignment explanation
Indices: 45963900--45963954 Score: 55
Period size: 9 Copynumber: 6.6 Consensus size: 9
45963890 TTTTAAATGT
45963900 TTTTTTATA
1 TTTTTTATA
45963909 TTTTTTATA
1 TTTTTTATA
45963918 -TTTTTA-A
1 TTTTTTATA
45963925 TTTTTTA-A
1 TTTTTTATA
***
45963933 -AAATTATA
1 TTTTTTATA
45963941 TTTTTTATA
1 TTTTTTATA
45963950 TTTTT
1 TTTTT
45963955 AAATAATTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
7 4 0.11
8 14 0.38
9 19 0.51
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (9 bp):
TTTTTTATA
Found at i:45963939 original size:23 final size:24
Alignment explanation
Indices: 45963913--45963977 Score: 80
Period size: 23 Copynumber: 2.8 Consensus size: 24
45963903 TTTATATTTT
45963913 TTATATTTTTAATTTTTTAAA-AA
1 TTATATTTTTAATTTTTTAAATAA
*
45963936 TTATATTTTTTATATTTTTAAATAA
1 TTATATTTTTAAT-TTTTTAAATAA
* *
45963961 TTTTA-TTTTATTTTTTT
1 TTATATTTTTAATTTTTT
45963978 GAATTTTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
23 17 0.47
24 13 0.36
25 6 0.17
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (24 bp):
TTATATTTTTAATTTTTTAAATAA
Found at i:45963946 original size:25 final size:25
Alignment explanation
Indices: 45963913--45963969 Score: 82
Period size: 23 Copynumber: 2.4 Consensus size: 25
45963903 TTTATATTTT
*
45963913 TTATATTTTTAAT-TTTTTAAA-AA
1 TTATATTTTTTATATTTTTAAATAA
45963936 TTATATTTTTTATATTTTTAAATAA
1 TTATATTTTTTATATTTTTAAATAA
*
45963961 TTTTATTTT
1 TTATATTTT
45963970 ATTTTTTTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 12 0.40
24 8 0.27
25 10 0.33
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (25 bp):
TTATATTTTTTATATTTTTAAATAA
Found at i:45963977 original size:32 final size:30
Alignment explanation
Indices: 45963887--45963994 Score: 105
Period size: 32 Copynumber: 3.5 Consensus size: 30
45963877 TTTTAAAAAC
*
45963887 TATTTTTAAATGTTT-TTTTATATTTTTTA
1 TATTTTTAAATTTTTATTTTATATTTTTTA
* **
45963916 TATTTTTAATTTTTTAAAAATTATATTTTTTA
1 TATTTTTAAATTTTT--ATTTTATATTTTTTA
45963948 TATTTTTAAATAATTTTATTTTAT-TTTTTTGA
1 TATTTTTAAAT--TTTTATTTTATATTTTTT-A
*
45963980 -ATTTTTAAAATTTTA
1 TATTTTTAAATTTTTA
45963995 AAATTTTAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
29 18 0.28
31 15 0.23
32 28 0.43
34 4 0.06
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.68
Consensus pattern (30 bp):
TATTTTTAAATTTTTATTTTATATTTTTTA
Found at i:45964001 original size:32 final size:33
Alignment explanation
Indices: 45963902--45964002 Score: 106
Period size: 32 Copynumber: 3.2 Consensus size: 33
45963892 TTAAATGTTT
**
45963902 TTTTATATTTTTTATATTTTTAATTTTTTAAAA
1 TTTTATATTTTTTATATTTTTAAAATTTTAAAA
*
45963935 -ATTATATTTTTTATATTTTTAAATAATTTT---A
1 TTTTATATTTTTTATATTTTT-AA-AATTTTAAAA
45963966 TTTTAT-TTTTTTGA-ATTTTTAAAATTTTAAAA
1 TTTTATATTTTTT-ATATTTTTAAAATTTTAAAA
45963998 TTTTA
1 TTTTA
45964003 ATTAATTGCT
Statistics
Matches: 57, Mismatches: 4, Indels: 15
0.75 0.05 0.20
Matches are distributed among these distances:
29 6 0.11
30 2 0.04
31 13 0.23
32 30 0.53
33 2 0.04
34 4 0.07
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (33 bp):
TTTTATATTTTTTATATTTTTAAAATTTTAAAA
Found at i:45964813 original size:114 final size:113
Alignment explanation
Indices: 45964493--45965365 Score: 971
Period size: 114 Copynumber: 7.7 Consensus size: 113
45964483 CGATCTTCGT
* * * * ** * *
45964493 AAAACACCGCTAAAGCACATAATTAGCGTCGCAATGCAAAAAGTGCCGCAAAATATCTTAACCAA
1 AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCAA
*
45964558 AACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGGA
66 AACGCATCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTAT-GA
* * *
45964607 AAAACGCCGCTAAAGCACA-GATTA-CGGCGCATTATAAAAAGCGCCGC-AAAAATATTAACAAA
1 AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCAA
*
45964669 AACGCATCGTTTGGTCTTGAGGTATTTTAGAATTAGTGGCGCTTAT-A
66 AACGCATCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGA
* * * * * *
45964716 ATGAAACGCCGCTAACGAACATCATTAGCGGCACAATATAAAAAGCGTCGCAAAATATCTTAACC
1 A--AAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACC
*
45964781 AAAACGCAGCGTTTGG-CTTTGAGGTATATTAGAATTAGTGGCGCTTATGGA
64 AAAACGCATCGTTTGGTC-TTGAGGTATATTAGAATTAGTGGCGCTTAT-GA
* * ** *
45964832 AAAACGCCTCTAAAGCACACCATTAGCGGCATATTATACAAAGCGCCGCAAAAAATCTTAACCAA
1 AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCAA
* * * * *
45964897 AATGCATCGTTTTGG-GTTGATGCA-ATTTAGAATTAGTGGCACTTATGGA
66 AACGCATCG-TTTGGTCTTGAGGTATA-TTAGAATTAGTGGCGCTTAT-GA
* * ** * *
45964946 AAAACGCCGCTAAAGCACACCATTAGCGTCGCATTATTCAGAGCGCCGCAAAAAATCTTAACTAA
1 AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCAA
* *
45965011 AACGCATCGTTTTGG-GTTGAGGTAT-TTGAGAATTAGTGGCGCTTATAA
66 AACGCATCG-TTTGGTCTTGAGGTATATT-AGAATTAGTGGCGCTTATGA
* * *
45965059 TAAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCACCGCAAAATATCTTTACCA
1 -AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCA
45965124 AAACGCAGT-GTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGGA
65 AAACGCA-TCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTAT-GA
* ** * * * * *
45965174 CAAACGCCGCTAAAGCACAGAATTACCGGCGCATTATGAAAGGCGCCGTAAAAAATATTAACCAA
1 AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCAA
* * *
45965239 AACGCATCGTTTGGTCTTGAGGCATTTTAGAATTAGTGGCAC-TA-GA
66 AACGCATCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGA
* * * *
45965285 GTAAAACGCC-ATGAAAGTACATCATTAGCGGCGCATTATACAAAGTGCCGCAAAAAAAATCTTA
1 --AAAACGCCGCT-AAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGC--AAAAAATCTTA
**
45965349 ACCAAAACATATCGTTT
61 ACCAAAACGCATCGTTT
45965366 TAAACCGAAA
Statistics
Matches: 647, Mismatches: 89, Indels: 45
0.83 0.11 0.06
Matches are distributed among these distances:
109 2 0.00
111 74 0.11
112 23 0.04
113 73 0.11
114 439 0.68
115 34 0.05
116 2 0.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (113 bp):
AAAACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCGCCGCAAAAAATCTTAACCAA
AACGCATCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGA
Found at i:45965126 original size:342 final size:341
Alignment explanation
Indices: 45964531--45965366 Score: 1098
Period size: 342 Copynumber: 2.4 Consensus size: 341
45964521 TCGCAATGCA
* * * **
45964531 AAAAGTGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTG
1 AAAAGCGCCGCAAAAAATCTTAACCAAAACGCATCGTTTGGTCTTGAGCAAT-TTAGAATTAGTG
* * *
45964596 GCGCTTATGGAAAAACGCCGCTAAAGCACAGATTA-CGGCGCATTATAAAAAGCGCCGC-AAAAA
65 GCACTTATGGAAAAACGCCGCTAAAGCACACATTAGCGGCGCATTATACAAAGCGCCGCAAAAAA
* * *
45964659 TATTAACAAAAACGCATCG-TTTGGTCTTGAGGTATTTTAGAATTAGTGGCGCTTATAATGAAAC
130 TCTTAACAAAAACGCATCGTTTTGGTCTTGAGGTATTTGAGAATTAGTGGCGCTTATAATAAAAC
* **
45964723 GCCGCTAACGAACATCATTAGCGGCACAATATAAAAAGCGTCGCAAAATATCTTAACCAAAACGC
195 GCCGCTAAAGAACATCATTAGCGGCACAATATAAAAAGCACCGCAAAATATCTTAACCAAAACGC
*
45964788 AGCGTTTGG-CTTTGAGGTATATTAGAATTAGTGGCGCTTATGGAAAAACGCCTCTAAAGCACAC
260 AGCGTTTGGTC-TTGAGGTATATTAGAATTAGTGGCGCTTATGGAAAAACGCCGCTAAAGCACAC
* * *
45964852 CATTAGCGGCATATTAT-
324 AATTACCGGCACATTATG
* *
45964869 ACAAAGCGCCGCAAAAAATCTTAACCAAAATGCATCGTTTTGG-GTTGATGCAATTTAGAATTAG
1 A-AAAGCGCCGCAAAAAATCTTAACCAAAACGCATCG-TTTGGTCTTGA-GCAATTTAGAATTAG
* * *
45964933 TGGCACTTATGGAAAAACGCCGCTAAAGCACACCATTAGCGTCGCATTATTCAGAGCGCCGCAAA
63 TGGCACTTATGGAAAAACGCCGCTAAAGCACA-CATTAGCGGCGCATTATACAAAGCGCCGCAAA
* *
45964998 AAATCTTAACTAAAACGCATCGTTTTGG-GTTGAGGTATTTGAGAATTAGTGGCGCTTATAATAA
127 AAATCTTAACAAAAACGCATCGTTTTGGTCTTGAGGTATTTGAGAATTAGTGGCGCTTATAATAA
* * * *
45965062 AACGCCGCTAAAGCACATCATTAGCGGCGCATTATAAAAAGCACCGCAAAATATCTTTACCAAAA
192 AACGCCGCTAAAGAACATCATTAGCGGCACAATATAAAAAGCACCGCAAAATATCTTAACCAAAA
* *
45965127 CGCAGTGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGGACAAACGCCGCTAAAGCAC
257 CGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGGAAAAACGCCGCTAAAGCAC
* *
45965192 AGAATTACCGGCGCATTATG
322 ACAATTACCGGCACATTATG
* * * *
45965212 AAAGGCGCCGTAAAAAATATTAACCAAAACGCATCGTTTGGTCTTGAGGCATTTTAGAATTAGTG
1 AAAAGCGCCGCAAAAAATCTTAACCAAAACGCATCGTTTGGTCTTGA-GCAATTTAGAATTAGTG
* * * *
45965277 GCAC-TA-GAGTAAAACGCC-ATGAAAGTACATCATTAGCGGCGCATTATACAAAGTGCCGCAAA
65 GCACTTATG-GAAAAACGCCGCT-AAAGCACA-CATTAGCGGCGCATTATACAAAGCGCCGC--A
* **
45965339 AAAAATCTTAACCAAAACATATCGTTTT
125 AAAAATCTTAACAAAAACGCATCGTTTT
45965367 AAACCGAAAC
Statistics
Matches: 433, Mismatches: 51, Indels: 23
0.85 0.10 0.05
Matches are distributed among these distances:
338 1 0.00
339 76 0.18
340 14 0.03
341 67 0.15
342 242 0.56
343 33 0.08
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.25
Consensus pattern (341 bp):
AAAAGCGCCGCAAAAAATCTTAACCAAAACGCATCGTTTGGTCTTGAGCAATTTAGAATTAGTGG
CACTTATGGAAAAACGCCGCTAAAGCACACATTAGCGGCGCATTATACAAAGCGCCGCAAAAAAT
CTTAACAAAAACGCATCGTTTTGGTCTTGAGGTATTTGAGAATTAGTGGCGCTTATAATAAAACG
CCGCTAAAGAACATCATTAGCGGCACAATATAAAAAGCACCGCAAAATATCTTAACCAAAACGCA
GCGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGGAAAAACGCCGCTAAAGCACACAA
TTACCGGCACATTATG
Found at i:45965376 original size:20 final size:20
Alignment explanation
Indices: 45965348--45965385 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
45965338 AAAAAATCTT
*
45965348 AACCAAAACATATCGTTTTA
1 AACCAAAACATAACGTTTTA
*
45965368 AACCGAAACATAACGTTT
1 AACCAAAACATAACGTTT
45965386 CGTCTTGAGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.21, G:0.08, T:0.26
Consensus pattern (20 bp):
AACCAAAACATAACGTTTTA
Found at i:45966124 original size:21 final size:21
Alignment explanation
Indices: 45966100--45966143 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
45966090 AAGGGTACTT
* *
45966100 GGTTTA-ATGGTTTGAGTTTAA
1 GGTTTAGA-GGTTGGAGATTAA
45966121 GGTTTAGAGGTTGGAGATTAA
1 GGTTTAGAGGTTGGAGATTAA
45966142 GG
1 GG
45966144 GATAGGGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (21 bp):
GGTTTAGAGGTTGGAGATTAA
Found at i:45967113 original size:191 final size:191
Alignment explanation
Indices: 45966778--45967157 Score: 611
Period size: 191 Copynumber: 2.0 Consensus size: 191
45966768 TGCAAATCCC
* * * * *
45966778 TAGACCTTTCACCTCTTCAACGATGATTTCCCCTCTTCTTGGTCGAATATCGCTTCTCGTTTGGG
1 TAGACCTTTCACCTCTTCAACGACGATTTCCCCTCTTCTCGATCAAATATCGCTTCTCGTCTGGG
* *
45966843 CTGACTGGTAAAAAACTTTCCAAATCCCTAATTTCTCCGTTGACTCCGTATATGGCTTTTCATTT
66 CTGACTGGTAAAAAACTTTCCAAATCCCTAATTTCTCCGTTGAATACGTATATGGCTTTTCATTT
45966908 TTCTGTTCGATTTTTTCTTTCTCTAATGCCCGCTTTGTTTTTCCTTTCTCTTTAAATTCCA
131 TTCTGTTCGATTTTTTCTTTCTCTAATGCCCGCTTTGTTTTTCCTTTCTCTTTAAATTCCA
*
45966969 TAGACCTTTCAGCC-CTTCAACGACGATTTCCCCTCTTCTCGATCAAATATTGCTTCTCGTCTGG
1 TAGACCTTTCA-CCTCTTCAACGACGATTTCCCCTCTTCTCGATCAAATATCGCTTCTCGTCTGG
*
45967033 GCTGACTGGTAAAAATCTTTCCAAATCCCTAATTTCTCCGTTGAATACGTATATGG-TTGTTCAT
65 GCTGACTGGTAAAAAACTTTCCAAATCCCTAATTTCTCCGTTGAATACGTATATGGCTT-TTCAT
* * * *
45967097 TTTTTTGTTTGATTTTTTCTTTCTTTAATGCTCGCTTTGTTTTTCCTTTCTCTTTAAATTC
129 TTTTCTGTTCGATTTTTTCTTTCTCTAATGCCCGCTTTGTTTTTCCTTTCTCTTTAAATTC
45967158 TGTGTTGCTT
Statistics
Matches: 174, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
190 2 0.01
191 170 0.98
192 2 0.01
ACGTcount: A:0.18, C:0.25, G:0.13, T:0.45
Consensus pattern (191 bp):
TAGACCTTTCACCTCTTCAACGACGATTTCCCCTCTTCTCGATCAAATATCGCTTCTCGTCTGGG
CTGACTGGTAAAAAACTTTCCAAATCCCTAATTTCTCCGTTGAATACGTATATGGCTTTTCATTT
TTCTGTTCGATTTTTTCTTTCTCTAATGCCCGCTTTGTTTTTCCTTTCTCTTTAAATTCCA
Found at i:45968139 original size:25 final size:25
Alignment explanation
Indices: 45968111--45968158 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
45968101 TTTTGAAGGG
45968111 ATTAA-TTAGATTTTTTAAATTATGT
1 ATTAATTTA-ATTTTTTAAATTATGT
45968136 ATTAATTTAATTTTTTAAATTAT
1 ATTAATTTAATTTTTTAAATTAT
45968159 AATGCAGCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (25 bp):
ATTAATTTAATTTTTTAAATTATGT
Done.