Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 14 of 297
Found at i:4563342 original size:51 final size:51
Alignment explanation
Indices: 4563279--4563454 Score: 158
Period size: 51 Copynumber: 3.5 Consensus size: 51
4563269 CGGATGCCCG
* *
4563279 GTGGCCTACACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTT-CACAAA
1 GTGGCCTACACATAGTACCACACTTGTGA-CCAAAGCTACCTT-TTACACAAA
* * *
4563330 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTTACACATA
1 GTGGCCTACACATAGTACCACACTTGTGACCAAAGCTACCTTTTACACAAA
* * * * * * *** *
4563381 GTGGCCTACACTTAGCACCACACATGTGATCGAAGCTATCGCGTACACATA
1 GTGGCCTACACATAGTACCACACTTGTGACCAAAGCTACCTTTTACACAAA
* * *
4563432 GTAGCCTACACTTAGTACTACAC
1 GTGGCCTACACATAGTACCACAC
4563455 ACGTGACCTA
Statistics
Matches: 106, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
50 2 0.02
51 103 0.97
52 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.26
Consensus pattern (51 bp):
GTGGCCTACACATAGTACCACACTTGTGACCAAAGCTACCTTTTACACAAA
Found at i:4569763 original size:22 final size:22
Alignment explanation
Indices: 4569738--4569813 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
4569728 GTGTATGTAT
4569738 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * * ****
4569760 ATGTGATGAATGTCAAAGTGTATGT
1 ATGTGAT-AAGGCCGAA-TG-GCCA
4569785 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
4569807 ATGTGAT
1 ATGTGAT
4569814 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:4569809 original size:243 final size:239
Alignment explanation
Indices: 4569378--4570162 Score: 1337
Period size: 243 Copynumber: 3.3 Consensus size: 239
4569368 ATTTTGTTAC
4569378 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
4569443 TATG--TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG--TATGTGATAA
64 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAA
4569504 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTG
129 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTG
4569569 ATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
194 ATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
4569615 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
**
4569680 TGTATATGTGATAAGGCCGAATGGATAATGTGATGAATGTGAAAGTGTGTGTATGTATATGTGAT
66 TGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA----GTGTATGTATATGTGAT
*
4569745 AAGGCCGAATGGCCAATGTGATGAATGTCAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATG
127 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATG
*
4569810 TGATGAATGTGAAAGTGTATGTATATGATAAGGCCGAATGGCCAATGT
192 TGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
*
4569858 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGATCAATGTGAAAGTGTA
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
4569923 TGTATATGTGAGAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGG
66 TGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGG
**
4569988 CCGAATGGATAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGAT
131 CCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGAT
*
4570053 GAATGTGAAAGTGTATGTATGTGATAAGGCTGAATGGCCAATGT
196 GAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
* * * * * *
4570097 GATGAATGTGAAAGTATATATATATGATAAGGCCGAATGGTCAATGGGATGGAA-GTGGAAGTGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGAT-GAATGTGAAAGTGT
4570161 AT
65 AT
4570163 AACTGTGATA
Statistics
Matches: 519, Mismatches: 20, Indels: 16
0.94 0.04 0.03
Matches are distributed among these distances:
235 47 0.09
237 58 0.11
239 181 0.35
240 2 0.00
241 7 0.01
243 224 0.43
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (239 bp):
GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
TGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGG
CCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGAT
GAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
Found at i:4570027 original size:25 final size:25
Alignment explanation
Indices: 4569999--4570077 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
4569989 CGAATGGATA
4569999 ATGTGATGAATGTGAAAGTGTATGT
1 ATGTGATGAATGTGAAAGTGTATGT
* * * *
4570024 ATGTGAT-AAGGCCGAATG-GCCA---
1 ATGTGATGAATG-TGAAAGTG-TATGT
4570046 ATGTGATGAATGTGAAAGTGTATGT
1 ATGTGATGAATGTGAAAGTGTATGT
4570071 ATGTGAT
1 ATGTGAT
4570078 AAGGCTGAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 14
0.64 0.13 0.23
Matches are distributed among these distances:
22 12 0.31
23 4 0.10
24 4 0.10
25 19 0.49
ACGTcount: A:0.32, C:0.05, G:0.32, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATGT
Found at i:4570174 original size:47 final size:47
Alignment explanation
Indices: 4569378--4570162 Score: 1293
Period size: 47 Copynumber: 16.4 Consensus size: 47
4569368 ATTTTGTTAC
4569378 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCAATGT
4569427 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
4569474 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
4569521 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
4569568 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
4569615 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
**
4569662 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGATAATGT
1 GATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCAATGT
4569711 GATGAATGTGAAAGTGTGTGTATGTATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAA----GTGTATG--TATGTGATAAGGCCGAATGGCCAATGT
*
4569764 GATGAATGTCAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
*
4569811 GATGAATGTGAAAGTGTATGTATATGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
4569858 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
* *
4569905 GATCAATGTGAAAGTGTATGTATATGTGAGAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCAATGT
**
4569954 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGATAATGT
1 GATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCAATGT
4570003 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
*
4570050 GATGAATGTGAAAGTGTATGTATGTGATAAGGCTGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
* * * * *
4570097 GATGAATGTGAAAGTATATATATATGATAAGGCCGAATGGTCAATGG
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
*
4570144 GATGGAA-GTGGAAGTGTAT
1 GAT-GAATGTGAAAGTGTAT
4570163 AACTGTGATA
Statistics
Matches: 702, Mismatches: 25, Indels: 20
0.94 0.03 0.03
Matches are distributed among these distances:
47 497 0.71
48 3 0.00
49 156 0.22
53 46 0.07
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
Found at i:4578605 original size:47 final size:46
Alignment explanation
Indices: 4578535--4578799 Score: 204
Period size: 47 Copynumber: 5.7 Consensus size: 46
4578525 TAAAGTGCCT
4578535 ATGCCATGTCCCAGACACTGTCTTACATTGGCTCATATCTCAAGCCG
1 ATGCCATGTCCCAGACA-TGTCTTACATTGGCTCATATCTCAAGCCG
* *
4578582 GTGCCATGTCCCAGACATGGTCTTACATTGACTACCATATCGT--AGCCG
1 ATGCCATGTCCCAGACAT-GTCTTACATTGGCT--CATATC-TCAAGCCG
* * ** *
4578630 ATG-CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCG
1 ATGCCATGTCCCAGACATGTCTTACATTGGCTCATATCTC-AAGCCG
* * * * * *
4578676 ATG-CATTTCCCAGACATGTCTTACACTAGCTC-TCGTCTCCATGCCA
1 ATGCCATGTCCCAGACATGTCTTACATTGGCTCAT-ATCT-CAAGCCG
* * *
4578722 ATGCCATGTCCCAGACATGGTCTTAAATTGGCTCTCATAATGT--GGCCG
1 ATGCCATGTCCCAGACAT-GTCTTACATTGG--CTCAT-ATCTCAAGCCG
* *
4578770 ATG-CATGTCCTAGACATGTCTTACACTGGC
1 ATGCCATGTCCCAGACATGTCTTACATTGGC
4578800 ACACACAAGT
Statistics
Matches: 177, Mismatches: 27, Indels: 31
0.75 0.11 0.13
Matches are distributed among these distances:
43 1 0.01
44 4 0.02
46 67 0.38
47 70 0.40
48 22 0.12
49 6 0.03
50 4 0.02
51 3 0.02
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGTCTTACATTGGCTCATATCTCAAGCCG
Found at i:4578676 original size:46 final size:46
Alignment explanation
Indices: 4578539--4578799 Score: 210
Period size: 46 Copynumber: 5.6 Consensus size: 46
4578529 GTGCCTATGC
* * * * *
4578539 CATGTCCCAGACACTGTCTTACATTGGCTCATATCTC-AAGCCGGTG
1 CATGTCCCAGACA-TGTCTTACACTGGCTTACATCTCGAGGCCGATG
* * *
4578585 CCATGTCCCAGACATGGTCTTACATTGAC-TACCATATCGTA-GCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTTA-CATCTCG-AGGCCGATG
*
4578633 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCGATG
* * * * * *
4578679 CATTTCCCAGACATGTCTTACACTAGCTCT-CGTCTCCATGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGCCGATG
* * * *
4578725 CCATGTCCCAGACATGGTCTTAAATTGGCTCT-CATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCGAGGCCGATG
*
4578773 CATGTCCTAGACATGTCTTACACTGGC
1 CATGTCCCAGACATGTCTTACACTGGC
4578800 ACACACAAGT
Statistics
Matches: 177, Mismatches: 27, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
45 1 0.01
46 75 0.42
47 72 0.41
48 27 0.15
49 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCGATG
Found at i:4583747 original size:15 final size:15
Alignment explanation
Indices: 4583729--4583767 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
4583719 TCCAAGATAG
4583729 AGAAACCCAGAATAA
1 AGAAACCCAGAATAA
*
4583744 AGAAACCCAGAGTAA
1 AGAAACCCAGAATAA
4583759 AGAAACCCA
1 AGAAACCCA
4583768 AGATACGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.56, C:0.23, G:0.15, T:0.05
Consensus pattern (15 bp):
AGAAACCCAGAATAA
Found at i:4586226 original size:55 final size:51
Alignment explanation
Indices: 4586142--4586358 Score: 203
Period size: 55 Copynumber: 4.2 Consensus size: 51
4586132 AGCCTACACA
* * *
4586142 TAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAACCTGCACTTGGTAT
1 TAGTACTACACACGTGACCAATTATCCGGTACACGTAGTAGCCTGCAC-T--T-T
4586197 TAGTACTACACACGTGACCAATTATCCGGTACACGTAGTAGCCTGCAC--T
1 TAGTACTACACACGTGACCAATTATCCGGTACACGTAGTAGCCTGCACTTT
** * *
4586246 TAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCAC--T
1 TAGTACTACACACGTGACC-AATTATCCGGTACACGTAGTAGCCTGCACTTT
* * * ** * *
4586296 TAGTACTACACACCTGATCACAGTTTTTGGGTACGCATAGTAGCCTGCAC--T
1 TAGTACTACACACGTGA-C-CAATTATCCGGTACACGTAGTAGCCTGCACTTT
4586347 TAGTACTACACA
1 TAGTACTACACA
4586359 TGCAACCTCA
Statistics
Matches: 142, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
49 20 0.14
50 42 0.30
51 34 0.24
52 1 0.01
55 45 0.32
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (51 bp):
TAGTACTACACACGTGACCAATTATCCGGTACACGTAGTAGCCTGCACTTT
Found at i:4590841 original size:27 final size:27
Alignment explanation
Indices: 4590378--4590841 Score: 515
Period size: 27 Copynumber: 17.2 Consensus size: 27
4590368 AAAGTACTCC
4590378 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
4590405 C-AGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
4590432 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * **
4590459 -TAGTTTACAAAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* * *
4590486 CGATTTATAGAATTATCGTTTTACCTT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
4590513 CGATTTGTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
4590540 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
4590567 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * *
4590594 CAATTTGTA-AAGTTATCATTTTACCCT
1 CGATTTACAGAA-TTACCGTTTTACCCT
* *
4590621 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
4590648 CGATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
4590675 CAATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
4590702 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** *
4590729 CAATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
4590756 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
4590783 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
4590810 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
4590837 TGATT
1 CGATT
4590842 GTGAAATTAC
Statistics
Matches: 363, Mismatches: 64, Indels: 20
0.81 0.14 0.04
Matches are distributed among these distances:
26 6 0.02
27 351 0.97
28 6 0.02
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:4590876 original size:27 final size:27
Alignment explanation
Indices: 4590846--4591040 Score: 187
Period size: 27 Copynumber: 7.2 Consensus size: 27
4590836 TTGATTGTGA
4590846 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
4590873 AATT-TTCGAAATACCCCTATAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * * *
4590900 AATTGCTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* **
4590927 AGTTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
4590954 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* ** *
4590981 AAATACCAAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* ** * *
4591008 AATTACTGAGATACCTTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
4591035 AATTAC
1 AATTAC
4591041 CATTTTGCCC
Statistics
Matches: 134, Mismatches: 30, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
26 1 0.01
27 132 0.99
28 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:4591033 original size:54 final size:54
Alignment explanation
Indices: 4590846--4591042 Score: 227
Period size: 54 Copynumber: 3.6 Consensus size: 54
4590836 TTGATTGTGA
* * ** * *
4590846 AATTACTGAAATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAG
* * * **
4590900 AATTGCTGAAATACCCTTATAGGATAGAGTTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAG
*
4590954 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAAGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAG
* * *
4591008 AATTACTGAGATACCTTTGTGGGGTA-AAATTACCA
1 AATTACTGAAATACCCTTGTAGGGTAGAAA-TACCA
4591043 TTTTGCCCCT
Statistics
Matches: 122, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
53 4 0.03
54 117 0.96
55 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAG
Found at i:4591039 original size:81 final size:81
Alignment explanation
Indices: 4590846--4591022 Score: 223
Period size: 81 Copynumber: 2.2 Consensus size: 81
4590836 TTGATTGTGA
* * * **
4590846 AATTACTGAAATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAGAATTGCTGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCAAAA
4590911 TACCCTTATAGGATAG
66 TACCCTTATAGGATAG
* ** * *
4590927 AGTTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCAAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCAAAA
4590992 TACCCCTGTA-AGG-TAG
66 TA-CCCT-TATAGGATAG
*
4591008 AATTACTGAGATACC
1 AATTACTGAAATACC
4591023 TTTGTGGGGT
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
81 71 0.89
82 7 0.09
83 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (81 bp):
AATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCAAAA
TACCCTTATAGGATAG
Found at i:4591284 original size:27 final size:27
Alignment explanation
Indices: 4591242--4591320 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 27
4591232 GAGGAAGCGT
*
4591242 TTCTGGTGGCTATGCCACAAATATCTA
1 TTCTGGTGGCTCTGCCACAAATATCTA
* *
4591269 TTCTGGTGGCTCTGCCACAATATTTGTA
1 TTCTGGTGGCTCTGCCACAA-ATATCTA
* *
4591297 TT-TGGTGACTCTGTCAC-AATATCT
1 TTCTGGTGGCTCTGCCACAAATATCT
4591321 GTTGACCGAT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
25 4 0.09
26 1 0.02
27 32 0.73
28 7 0.16
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.38
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAAATATCTA
Found at i:4591443 original size:22 final size:22
Alignment explanation
Indices: 4591411--4591469 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
4591401 CCAGTTATTA
*
4591411 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
4591433 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
4591455 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
4591470 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:4591656 original size:27 final size:27
Alignment explanation
Indices: 4591634--4591700 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
4591624 TAGGTGGGTT
*
4591634 TGCCACATTATCTGAT-TCTGGTGGCTC
1 TGCCACAATATCT-ATATCTGGTGGCTC
*
4591661 TGCCACAATATCTATATCTGGTGACTC
1 TGCCACAATATCTATATCTGGTGGCTC
* *
4591688 TGTCACGATATCT
1 TGCCACAATATCT
4591701 GTTCTGGCAG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 2 0.06
27 33 0.94
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTATATCTGGTGGCTC
Found at i:4591834 original size:6 final size:6
Alignment explanation
Indices: 4591825--4591939 Score: 92
Period size: 6 Copynumber: 18.8 Consensus size: 6
4591815 TTGCATTCAC
* * *
4591825 ATTCTG ATTCTG ATTCTG -TCACCTA ATTTTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
4591874 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTA
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
4591923 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
4591940 CATTTTGGTT
Statistics
Matches: 85, Mismatches: 16, Indels: 16
0.73 0.14 0.14
Matches are distributed among these distances:
5 4 0.05
6 74 0.87
7 5 0.06
8 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:4591860 original size:31 final size:31
Alignment explanation
Indices: 4591825--4591934 Score: 177
Period size: 31 Copynumber: 3.6 Consensus size: 31
4591815 TTGCATTCAC
*
4591825 ATTCTGATTCTGATTCTGTCACCTAATTTTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTG
* *
4591856 ATTCTGATTCTGATTCTGTTA-CTAATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTG
4591886 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTG
*
4591917 ATTCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
4591935 ATTCTCATTT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
30 27 0.38
31 45 0.62
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTG
Found at i:4591957 original size:61 final size:61
Alignment explanation
Indices: 4591831--4591960 Score: 172
Period size: 61 Copynumber: 2.1 Consensus size: 61
4591821 TCACATTCTG
* * **
4591831 ATTCTGATTCTGTCACCTAATTTTGATTCTGATTCTGATTCTGTTACTAATACTGATTCTG
1 ATTCTGATTCTGTCACCTAATTCTGATTCTAATTCTGATTCTGTTACTAATACTGATTCCA
* ** *
4591892 ATTCTGATTCTGTCACCTAATTCTGATTCTAATTCTGATTCTGATT-CTCATTTTGGTTCCA
1 ATTCTGATTCTGTCACCTAATTCTGATTCTAATTCTGATTCTG-TTACTAATACTGATTCCA
4591953 ATTCTGAT
1 ATTCTGAT
4591961 AATGTTTCTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
61 58 0.97
62 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.48
Consensus pattern (61 bp):
ATTCTGATTCTGTCACCTAATTCTGATTCTAATTCTGATTCTGTTACTAATACTGATTCCA
Found at i:4596173 original size:47 final size:48
Alignment explanation
Indices: 4596100--4596225 Score: 161
Period size: 47 Copynumber: 2.7 Consensus size: 48
4596090 TAGGTAAGGT
* * * * *
4596100 GTCGATTCCATGTCCCAGACACGGTCTTACATTGGCTCAT-GTCTC-TA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTA
4596147 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTA
*
4596195 GTCGATG-CATGTCCCATACAT-GTCTTACACT
1 GTCGATGCCATGTCCCAGACATGGTCTTACACT
4596226 AGCTTACGTC
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
46 12 0.17
47 50 0.70
48 9 0.13
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.31
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTA
Found at i:4604955 original size:79 final size:81
Alignment explanation
Indices: 4604819--4605003 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
4604809 TTGAATGATG
*
4604819 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
4604883 TGTGCGAGATAC-TAA
66 TGTGCGAGATACGTAA
* * * **
4604898 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
4604960 TTTGTGCGAGTTACTGTAA
64 TTTGTGCGAGATAC-GTAA
*
4604979 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
4605004 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 1 0.01
79 56 0.61
80 32 0.35
81 3 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACGTAA
Found at i:4605010 original size:40 final size:40
Alignment explanation
Indices: 4604819--4605003 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
4604809 TTGAATGATG
* * * *
4604819 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
4604859 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
4604899 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
4604938 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTGTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAA
*
4604979 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
4605004 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:4605025 original size:79 final size:78
Alignment explanation
Indices: 4604872--4605036 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 78
4604862 GGACTAAGAT
**
4604872 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAA-TCCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
4604937 ATCCGGGTTAAGTC
65 ATCCGGGTTAAATC
* *
4604951 CCGAAGGCATTTGTGCGAGTTACTGTAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATAC--TAATCCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
4605014 TATATCC-GGTTAAATT
62 TAAATCCGGGTTAAATC
4605030 CCGAAGG
1 CCGAAGG
4605037 TACGTGATTT
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
79 47 0.63
80 25 0.33
81 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
TCCGGGTTAAATC
Found at i:4611989 original size:43 final size:42
Alignment explanation
Indices: 4611941--4612042 Score: 116
Period size: 43 Copynumber: 2.4 Consensus size: 42
4611931 TCCTAGATAT
* * * *
4611941 GGTCTTACATGTTATCAC-ATATCGATGCCACTGTCCCACACA
1 GGTCTTACATGTAATCACAATAT-AATGCCAATGTCCCAAACA
* *
4611983 GGGTCTTACACGAAATCACAATATAATGCCAATGTCCCAAACA
1 -GGTCTTACATGTAATCACAATATAATGCCAATGTCCCAAACA
*
4612026 TGTCTTACATGTAATCA
1 GGTCTTACATGTAATCA
4612043 AAAATCGAGT
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
42 14 0.29
43 31 0.63
44 4 0.08
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.27
Consensus pattern (42 bp):
GGTCTTACATGTAATCACAATATAATGCCAATGTCCCAAACA
Found at i:4612120 original size:50 final size:49
Alignment explanation
Indices: 4612053--4612233 Score: 192
Period size: 50 Copynumber: 3.7 Consensus size: 49
4612043 AAAATCGAGT
4612053 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCTTATATCAAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTC-TATATCAAGGC
* * * * * * *
4612103 CGATTCCATATCCCAGACATGGTCTTATACTGGCTCTCCTCTTTC-TGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCT-CTATATCAAG-GC
* * *
4612153 CCATGCCATGTCCCAGACATGGTCTTACACT-A-ACAC-ATATCAA-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCTATATCAAGGC
* *
4612198 CGATGCCATGTCCCAGACGTGGTCTTACACTAACTC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTC
4612234 ACATGTATTG
Statistics
Matches: 106, Mismatches: 20, Indels: 13
0.76 0.14 0.09
Matches are distributed among these distances:
45 31 0.29
46 4 0.04
47 2 0.02
48 1 0.01
49 1 0.01
50 66 0.62
51 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.17, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCTATATCAAGGC
Found at i:4619968 original size:17 final size:16
Alignment explanation
Indices: 4619937--4619970 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
4619927 AAATATTATG
4619937 AAATAAAAACAAACAA
1 AAATAAAAACAAACAA
*
4619953 AAATAAACATCAAACAA
1 AAATAAA-AACAAACAA
4619970 A
1 A
4619971 TGCCATCTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.15, G:0.00, T:0.09
Consensus pattern (16 bp):
AAATAAAAACAAACAA
Found at i:4626051 original size:14 final size:14
Alignment explanation
Indices: 4626032--4626062 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
4626022 ATTTCTTGGC
*
4626032 CGGTTCGGTTCACT
1 CGGTTCGGTTCAAT
4626046 CGGTTCGGTTCAAT
1 CGGTTCGGTTCAAT
4626060 CGG
1 CGG
4626063 ACTATATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.26, G:0.32, T:0.32
Consensus pattern (14 bp):
CGGTTCGGTTCAAT
Found at i:4632526 original size:6 final size:6
Alignment explanation
Indices: 4632515--4632689 Score: 164
Period size: 6 Copynumber: 28.8 Consensus size: 6
4632505 AACCAAAATG
*
4632515 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
4632563 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
4632612 AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC AAAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC
* *
4632660 AGAATT AG-GTGAC AGAATC AGAATC AGAAT
1 AGAATC AGAAT--C AGAATC AGAATC AGAAT
4632690 GTGAATGCAA
Statistics
Matches: 139, Mismatches: 16, Indels: 28
0.76 0.09 0.15
Matches are distributed among these distances:
5 9 0.06
6 119 0.86
7 8 0.06
8 3 0.02
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:4632530 original size:30 final size:30
Alignment explanation
Indices: 4632494--4632622 Score: 163
Period size: 30 Copynumber: 4.3 Consensus size: 30
4632484 AAGAAACATT
* *
4632494 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAGAATCAGAATCAGA
* *
4632524 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
*
4632554 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATTAGGAACAGAATCAGAATCAGA
*
4632584 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTAGG-AACAGAATCAGAATCAGA
4632615 ATCAGAAT
1 ATCAGAAT
4632623 CAGAATCAGT
Statistics
Matches: 88, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.01
30 58 0.66
31 29 0.33
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (30 bp):
ATCAGAATTAGGAACAGAATCAGAATCAGA
Found at i:4632618 original size:73 final size:73
Alignment explanation
Indices: 4632526--4632689 Score: 294
Period size: 73 Copynumber: 2.2 Consensus size: 73
4632516 GAATCAGAAT
*
4632526 CAGAATCAGTAA-CAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAATCAGA
1 CAGAATCAG-AATCAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAAAATCAGAATCAGA
4632590 ATTAGGTGA
65 ATTAGGTGA
*
4632599 CAGAATCAGAATCAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAAAATCAGAATCAGAA
1 CAGAATCAGAATCAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAAAATCAGAATCAGAA
4632664 TTAGGTGA
66 TTAGGTGA
4632672 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
4632690 GTGAATGCAA
Statistics
Matches: 88, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
72 2 0.02
73 86 0.98
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (73 bp):
CAGAATCAGAATCAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAAAATCAGAATCAGAA
TTAGGTGA
Found at i:4632921 original size:22 final size:22
Alignment explanation
Indices: 4632873--4632931 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
4632863 GTAAATACGC
*
4632873 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
4632895 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
4632917 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
4632932 TACTAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:4633058 original size:27 final size:26
Alignment explanation
Indices: 4633019--4633097 Score: 95
Period size: 27 Copynumber: 3.0 Consensus size: 26
4633009 TCGATCGGTC
*
4633019 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGACAGAGCCACCAA
* *
4633045 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGACAGAGCCACCAA
* *
4633072 AACAGATATTTGTGGCATAGCCACCA
1 AACAGATA-TTGTGACAGAGCCACCA
4633098 CAACGCTTCC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
26 8 0.17
27 39 0.83
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGACAGAGCCACCAA
Found at i:4633349 original size:27 final size:27
Alignment explanation
Indices: 4633301--4633495 Score: 187
Period size: 27 Copynumber: 7.2 Consensus size: 27
4633291 GGGCAAAATG
* * ** *
4633301 GTAATTTTACCCCACAAAGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* **
4633328 GTAATTCTACCTTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
4633355 GTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* **
4633381 GATAATTCTACCCTACATGGGTATTTTG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
4633409 GTAATTCTATCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
4633436 ATAATTCTACCCTATAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
4633462 GGAATTTCTACCCTACAGGGGTATTTCA
1 GTAA-TTCTACCCTACAGGGGTATTTCA
4633490 GTAATT
1 GTAATT
4633496 TCACAATCAA
Statistics
Matches: 137, Mismatches: 27, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
26 3 0.02
27 130 0.95
28 4 0.03
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:4633377 original size:54 final size:54
Alignment explanation
Indices: 4633299--4633495 Score: 245
Period size: 54 Copynumber: 3.6 Consensus size: 54
4633289 AGGGGCAAAA
* * * *
4633299 TGGTAATTT-TACCCCACAAAGGTATCTCAGTAATTCTACCTTACAGGGGTATTT
1 TGGT-ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
*
4633353 TGGTATTTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTACATGGGTATTT
1 TGGTATTTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTT
* * * * *
4633407 TGGTAATTCTATCCTATAAGGGTATTTCAATAATTCTACCCTATAGGGGTATTT
1 TGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
* * *
4633461 CGGAATTTCTACCCTACAGGGGTATTTCAGTAATT
1 TGGTATTTCTACCCTACAAGGGTATTTCAGTAATT
4633496 TCACAATCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
53 5 0.04
54 117 0.96
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (54 bp):
TGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
Found at i:4633494 original size:81 final size:81
Alignment explanation
Indices: 4633319--4633495 Score: 207
Period size: 81 Copynumber: 2.2 Consensus size: 81
4633309 ACCCCACAAA
* *** *
4633319 GGTATCTCAGTAATTCTACCTTACAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGAT
1 GGTATTTCAGTAATTCTACCTTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCGAT
*
4633384 AATTCTACCCTACATG
66 AATTCTACCCTACAGG
** * *
4633400 GGTATTTTGGTAATTCTATCCTATA-A-GGGTATTTCAATAATTCTACCCTATAGGGGTATTTCG
1 GGTATTTCAGTAATTCTA-CCT-TACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTC-
*
4633463 GA-ATTTCTACCCTACAGG
63 GATAATTCTACCCTACAGG
4633481 GGTATTTCAGTAATT
1 GGTATTTCAGTAATT
4633496 TCACAATCAA
Statistics
Matches: 80, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
81 72 0.90
82 6 0.08
83 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.38
Consensus pattern (81 bp):
GGTATTTCAGTAATTCTACCTTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCGAT
AATTCTACCCTACAGG
Found at i:4633530 original size:27 final size:27
Alignment explanation
Indices: 4633500--4633747 Score: 318
Period size: 27 Copynumber: 9.2 Consensus size: 27
4633490 GTAATTTCAC
* * **
4633500 AATCAAGGGTAAAATAGTAATTTTACA
1 AATCGAGGGTAAAATAGTAATTCTGTA
*
4633527 AATCGAGGGTAAAA-CGATAATTCTGTA
1 AATCGAGGGTAAAATAG-TAATTCTGTA
4633554 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTCTGTA
* *
4633581 AATTGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTCTGTA
* *
4633608 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTCTGTA
4633635 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTCTGTA
** * **
4633662 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAATAGTAATTCTGTA
*
4633689 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTCTGTA
** *
4633716 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTCTGTA
4633743 AATCG
1 AATCG
4633748 GGAGTACTTT
Statistics
Matches: 194, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 192 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATAGTAATTCTGTA
Found at i:4633611 original size:81 final size:81
Alignment explanation
Indices: 4633500--4633778 Score: 355
Period size: 81 Copynumber: 3.4 Consensus size: 81
4633490 GTAATTTCAC
* * *
4633500 AATCAAGGGTAAAATAGTAATTTTACAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTTTAAAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
4633565 AAATAGTAATTCTGTA
66 AAATAGTAATTCTGTA
* * ** *
4633581 AATTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC-AGTAATTCTATAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTTTAAAAATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGGT
4633645 AAAATAGTAATTCTGTA
65 AAAATAGTAATTCTGTA
* * *
4633662 AATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTTTAAAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
** *
4633727 AAACGGTAATTTTGTA
66 AAATAGTAATTCTGTA
*** * *
4633743 AATCG-GGAGTACTTTGGTAATTTTACAAGTCGAGGG
1 AATCGAGG-GTAAAATGGTAATTTTAAAAATCGAGGG
4633779 CATTTCAGTA
Statistics
Matches: 171, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
80 3 0.02
81 168 0.98
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTTTAAAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
AAATAGTAATTCTGTA
Found at i:4633764 original size:54 final size:54
Alignment explanation
Indices: 4633500--4633747 Score: 352
Period size: 54 Copynumber: 4.6 Consensus size: 54
4633490 GTAATTTCAC
* * * * * *
4633500 AATCAAGGGTAAAATAGTAATTTTACAAATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTA
* * *
4633554 AATCGAGGGTAAAATAGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTA
*
4633608 AATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTA
* * *
4633662 AATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTA
* * *
4633716 AATCGAGGGTAAAACGGTAATTTTGTAAATCG
1 AATCGAGGGTAAAACAGTAATTCTATAAATCG
4633748 GGAGTACTTT
Statistics
Matches: 177, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 177 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (54 bp):
AATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTA
Found at i:4640616 original size:48 final size:48
Alignment explanation
Indices: 4640555--4641489 Score: 1789
Period size: 48 Copynumber: 19.5 Consensus size: 48
4640545 ATATGTGTGT
* *
4640555 GTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
4640603 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
4640651 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
4640699 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
4640747 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
4640795 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
4640843 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
4640891 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
4640939 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
4640987 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
4641035 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
4641083 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
4641131 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
4641179 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
4641227 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
*
4641275 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
*
4641323 GTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATATGTATAC
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
*
4641371 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
* * * *
4641419 GTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGGGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
4641467 GTGGTAAAGCCGAATGGCTAGTG
1 GTGGTAAAGCCGAATGGCTAGTG
4641490 ATTCGGCTAG
Statistics
Matches: 876, Mismatches: 11, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 876 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (48 bp):
GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
Found at i:4641709 original size:37 final size:37
Alignment explanation
Indices: 4641659--4641838 Score: 279
Period size: 37 Copynumber: 4.8 Consensus size: 37
4641649 GGAAATATAT
*
4641659 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
4641696 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
4641733 TCCGGGTAAGACCCGATGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCC---GATGACTACGTGTGGAGATTATG
* * *
4641773 TCCGAGTAAGACCCGATGACTACATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
4641810 TCTGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
4641839 GGACTATTCG
Statistics
Matches: 132, Mismatches: 8, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
37 96 0.73
40 36 0.27
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:4641783 original size:77 final size:77
Alignment explanation
Indices: 4641659--4641838 Score: 273
Period size: 77 Copynumber: 2.4 Consensus size: 77
4641649 GGAAATATAT
* * *
4641659 TCCGGGTAAGACCC---GATGACTACGTGTGGAGATTGTGTCCGGGTAAGACCCGATGACTACGT
1 TCCGGGTAAGACCCGATGATGACTACGTGTGGAGATTATGTCCGAGTAAGACCCGATGACTACAT
4641721 GTGGAGATTATG
66 GTGGAGATTATG
4641733 TCCGGGTAAGACCCGATGATGACTACGTGTGGAGATTATGTCCGAGTAAGACCCGATGACTACAT
1 TCCGGGTAAGACCCGATGATGACTACGTGTGGAGATTATGTCCGAGTAAGACCCGATGACTACAT
*
4641798 GTGGAGATTTTG
66 GTGGAGATTATG
*
4641810 TCTGGGTAAGACCCGAT-A--ACTACGTGTGG
1 TCCGGGTAAGACCCGATGATGACTACGTGTGG
4641839 GGACTATTCG
Statistics
Matches: 98, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
74 25 0.26
76 1 0.01
77 72 0.73
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (77 bp):
TCCGGGTAAGACCCGATGATGACTACGTGTGGAGATTATGTCCGAGTAAGACCCGATGACTACAT
GTGGAGATTATG
Found at i:4646991 original size:40 final size:40
Alignment explanation
Indices: 4646917--4647098 Score: 242
Period size: 40 Copynumber: 4.6 Consensus size: 40
4646907 AACCCAAGTA
* * *
4646917 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * *
4646956 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
4646996 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
4647036 CCTTCGGGACTTAGCCCAGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
4647076 CCTTCGGGAGTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
4647099 CATTCGAATA
Statistics
Matches: 127, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 12 0.09
40 112 0.88
41 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:4654254 original size:40 final size:40
Alignment explanation
Indices: 4654180--4654361 Score: 233
Period size: 40 Copynumber: 4.6 Consensus size: 40
4654170 AACCCAAGTA
* * *
4654180 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * * *
4654219 CCTTCGGGTCTTAGCCTGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* * *
4654259 CCTTCGGGACATAGCCCAGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
4654299 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
4654339 CCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
4654362 TATTCGAATA
Statistics
Matches: 124, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 12 0.10
40 109 0.88
41 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:4656062 original size:65 final size:65
Alignment explanation
Indices: 4655958--4656218 Score: 513
Period size: 65 Copynumber: 4.0 Consensus size: 65
4655948 TCCCTAGGGT
*
4655958 TAAGGTTGACCTGAATGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAGTGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATCTGA
4656023 TAAGGTTGACCTGAGTGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAGTGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATCTGA
4656088 TAAGGTTGACCTGAGTGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAGTGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATCTGA
4656153 TAAGGTTGACCTGAGTGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAGTGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATCTGA
4656218 T
1 T
4656219 GCATGGGACT
Statistics
Matches: 195, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
65 195 1.00
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (65 bp):
TAAGGTTGACCTGAGTGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:4669261 original size:15 final size:16
Alignment explanation
Indices: 4669243--4669272 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4669233 TTGTGCCTTG
4669243 TTGAT-ATGTGTTAAT
1 TTGATCATGTGTTAAT
4669258 TTGATCATGTGTTAA
1 TTGATCATGTGTTAA
4669273 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.27, C:0.03, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATCATGTGTTAAT
Found at i:4671533 original size:24 final size:24
Alignment explanation
Indices: 4671498--4671549 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
4671488 CAATATAATA
*
4671498 ACATTCAGATGAAATTTAAGTCAT
1 ACATTCAGATGAAATTTAAGACAT
*
4671522 ACATTCATATGAAATTTAAGACAT
1 ACATTCAGATGAAATTTAAGACAT
4671546 ACAT
1 ACAT
4671550 ACTCTTAGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.33
Consensus pattern (24 bp):
ACATTCAGATGAAATTTAAGACAT
Found at i:4675198 original size:50 final size:50
Alignment explanation
Indices: 4674957--4675200 Score: 260
Period size: 50 Copynumber: 4.9 Consensus size: 50
4674947 GGGTAAGGTT
* * * ** * ** *
4674957 CTGACGCCAAGTCCTAGACATGGTCTTACACTAGCTCAAAAATC-AAAGT
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGG
* * * *
4675006 C-GATGCCATGTCCCAGACATGGTCTTACACTAACTTTCGTATATCGAGG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGG
* * * * * * *
4675055 CTGATGCCATGTCTCAAACATGATCTTACACTGGTTCTCATCTATC-AGTG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAG-G
**
4675105 CTGATGCCATGTCCCAGACATGGTAGTACACTAGCTCTCATATCTCGAGG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGG
4675155 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTC
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTC
4675201 CTTAGCATCA
Statistics
Matches: 158, Mismatches: 33, Indels: 7
0.80 0.17 0.04
Matches are distributed among these distances:
48 32 0.20
49 6 0.04
50 118 0.75
51 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (50 bp):
CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGG
Found at i:4675723 original size:11 final size:11
Alignment explanation
Indices: 4675707--4675732 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
4675697 AACTAAAACG
4675707 AAATAAATTCA
1 AAATAAATTCA
4675718 AAATAAATTCA
1 AAATAAATTCA
4675729 AAAT
1 AAAT
4675733 GAGCAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (11 bp):
AAATAAATTCA
Found at i:4680188 original size:39 final size:39
Alignment explanation
Indices: 4680134--4680350 Score: 285
Period size: 39 Copynumber: 5.5 Consensus size: 39
4680124 TAATGGAGAA
*
4680134 TTATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
4680173 TTATACCCAGGCTAAGTCCCGAAGACATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
4680212 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
4680251 TTATATCTGGGTTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
4680290 TTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTAG
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGT-G
*
4680330 -TATATCCAGGGTTAAGGTCCC
1 TTATATCC-GGGCTAA-GTCCC
4680351 CCATGCTTTG
Statistics
Matches: 156, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 135 0.87
40 21 0.13
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:4683087 original size:46 final size:46
Alignment explanation
Indices: 4683031--4683203 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
4683021 TTGAGCATCC
4683031 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * * * * *
4683077 AAACTGGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCT
* * *
4683124 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* *
4683170 GAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
4683204 GCGGGCTACA
Statistics
Matches: 100, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 56 0.56
47 25 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
Found at i:4683184 original size:93 final size:93
Alignment explanation
Indices: 4683025--4683196 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
4683015 GGATGATTGA
* * * *
4683025 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTAAACTGGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTAAACTCGTTGAGT
4683090 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
4683118 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTAAACTCGTTGAGT
4683183 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
4683197 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:4689735 original size:250 final size:250
Alignment explanation
Indices: 4689281--4689779 Score: 946
Period size: 250 Copynumber: 2.0 Consensus size: 250
4689271 CGGAATAGTG
*
4689281 GTTTCGTGACATTAATCCGAGATAGAAACAATTATTTTATAATTATTTTGAGGTTTATGATATGA
1 GTTTCGTGACATAAATCCGAGATAGAAACAATTATTTTATAATTATTTTGAGGTTTATGATATGA
4689346 TTGCATGATTGTGTGAAAATTTCGTGATGAAATTCTATGCCTAAAGTGCTTAAATTGAAAGTAGG
66 TTGCATGATTGTGTGAAAATTTCGTGATGAAATTCTATGCCTAAAGTGCTTAAATTGAAAGTAGG
4689411 GACTAAATCGAATAAGTTGCAAAACTTGCATTCTAGAAGTTTTTAGTATGAAATTATTTTGGAAT
131 GACTAAATCGAATAAGTTGCAAAACTTGCATTCTAGAAGTTTTTAGTATGAAATTATTTTGGAAT
4689476 ATTAATGAGGAGGTCTTAAATAGCAATTTGACCAATTTTAAG-TCATGGACAAAA
196 ATTAATGAGGAGGTCTTAAATAGCAATTTGACCAATTTTAAGTTCATGGACAAAA
* *
4689530 GTTTTGTGACCATAAATCCGAGATAGAAATAATTATTTTATAATTATTTTGAGGTTTATGATATG
1 GTTTCGTGA-CATAAATCCGAGATAGAAACAATTATTTTATAATTATTTTGAGGTTTATGATATG
4689595 ATTGCATGATTGTGTGAAAATTTCGTGATGAAATTCTATGCCTAAAGTGCTTAAATTGAAAGTAG
65 ATTGCATGATTGTGTGAAAATTTCGTGATGAAATTCTATGCCTAAAGTGCTTAAATTGAAAGTAG
*
4689660 GGACTAAATCGAATAAGTTGCAAAACTTGCATTCTAGAAGTTTTTAGTATGAAATTGTTTTGGAA
130 GGACTAAATCGAATAAGTTGCAAAACTTGCATTCTAGAAGTTTTTAGTATGAAATTATTTTGGAA
4689725 TATTAATGAGGAGGTCTTAAATAGCAATTTGACCAATTTTAAGTTCATGGACAAA
195 TATTAATGAGGAGGTCTTAAATAGCAATTTGACCAATTTTAAGTTCATGGACAAA
4689780 GTTAGGACAT
Statistics
Matches: 244, Mismatches: 4, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
249 8 0.03
250 225 0.92
251 11 0.05
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.36
Consensus pattern (250 bp):
GTTTCGTGACATAAATCCGAGATAGAAACAATTATTTTATAATTATTTTGAGGTTTATGATATGA
TTGCATGATTGTGTGAAAATTTCGTGATGAAATTCTATGCCTAAAGTGCTTAAATTGAAAGTAGG
GACTAAATCGAATAAGTTGCAAAACTTGCATTCTAGAAGTTTTTAGTATGAAATTATTTTGGAAT
ATTAATGAGGAGGTCTTAAATAGCAATTTGACCAATTTTAAGTTCATGGACAAAA
Found at i:4690836 original size:46 final size:46
Alignment explanation
Indices: 4690786--4690958 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
4690776 TTGAGCATCT
4690786 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * *
4690832 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCC
* * *
4690879 GAACTCGTTGAGTTGAATCCGAGTTCACCTATGGATGCGAACG-CC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* *
4690924 TGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 -GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
4690959 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 13, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 56 0.54
47 28 0.27
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:4690939 original size:93 final size:93
Alignment explanation
Indices: 4690780--4690951 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
4690770 GGATGATTGA
* * * *
4690780 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAGT
4690845 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
4690873 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACCTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACCTATGGATGCGAACGTCC-GAACTCGTTGAG
4690937 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
4690952 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:4694877 original size:13 final size:13
Alignment explanation
Indices: 4694846--4694871 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4694836 AAAGTTGAAA
4694846 TGTTTGAATAAAG
1 TGTTTGAATAAAG
4694859 TGTTTGAATAAAG
1 TGTTTGAATAAAG
4694872 GATTTGGCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (13 bp):
TGTTTGAATAAAG
Found at i:4698951 original size:39 final size:39
Alignment explanation
Indices: 4698902--4699108 Score: 292
Period size: 39 Copynumber: 5.3 Consensus size: 39
4698892 TAATGGTGAA
* *
4698902 TTATATCCGGGCTAAGTCCTGAAGGCATTCGTCCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
4698941 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
4698980 TTATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
4699019 TTATATCCGGGTTAAGCCCCG-AGGCAATCGTTCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
4699057 TTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
4699096 TTATATCCGGGCT
1 TTATATCCGGGCT
4699109 TAAAGTCTCG
Statistics
Matches: 150, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
38 27 0.18
39 119 0.79
40 4 0.03
ACGTcount: A:0.18, C:0.23, G:0.29, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:4699126 original size:40 final size:39
Alignment explanation
Indices: 4698901--4699134 Score: 190
Period size: 39 Copynumber: 6.0 Consensus size: 39
4698891 ATAATGGTGA
* * * *
4698901 ATTATATCCGGGCT-AAGTCCTGAAGGCATTCGTCCTGGT
1 ATTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGT
* ** *
4698940 GTTATATCCGGGCT-AAGTCCCAAAGGCATTCGTGCTGGT
1 ATTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGT
* * * *
4698979 GTTATATCCGGGCT-AAGTCCTGAAGGCATTCGTGCTGGT
1 ATTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGT
* * * * * *
4699018 GTTATATCCGGG-TTAAGCCCCG-AGGCAATCGTTCTGGT
1 ATTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGT
*
4699056 GTTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGT
1 ATTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGT
* * *
4699095 ATTATATCCGGGCTTAAAGTCTCGCATGCTTTGTGGTGGT
1 ATTATATCCGGGC-TAAAGTCCCGCAGGCTTTGTGCTGGT
4699135 GATTGGATTT
Statistics
Matches: 172, Mismatches: 19, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
38 27 0.16
39 118 0.69
40 27 0.16
ACGTcount: A:0.18, C:0.22, G:0.29, T:0.31
Consensus pattern (39 bp):
ATTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGT
Found at i:4703448 original size:20 final size:19
Alignment explanation
Indices: 4703413--4703479 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 19
4703403 TTGTACGGGA
4703413 TTTGCACTTC-AGTGCCTCTG
1 TTTGCACTTCGA-TGCC-CTG
4703433 TTTGCACTTCGATGCCCATG
1 TTTGCACTTCGATGCCC-TG
* * *
4703453 TATACACTTCGGTGTCCCTG
1 TTTGCACTTCGATG-CCCTG
4703473 TTTGCAC
1 TTTGCAC
4703480 ATTTTTGCCC
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
19 1 0.03
20 34 0.87
21 4 0.10
ACGTcount: A:0.13, C:0.30, G:0.19, T:0.37
Consensus pattern (19 bp):
TTTGCACTTCGATGCCCTG
Found at i:4705697 original size:27 final size:27
Alignment explanation
Indices: 4705680--4705808 Score: 215
Period size: 27 Copynumber: 4.8 Consensus size: 27
4705670 TAATACAGTT
4705680 ATTTTACCCTATGGGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTTGGTC
4705707 ATTTTACCCTATGGGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTTGGTC
*
4705734 ATTTTACCCTATAGGGGTA-TTTGGATC
1 ATTTTACCCTATGGGGGTATTTTGG-TC
*
4705761 ATTTTACCCTATGGGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTTGGTC
*
4705788 ATTTTACCCCATGGGGGTATT
1 ATTTTACCCTATGGGGGTATT
4705809 GTGCTCACCA
Statistics
Matches: 96, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
26 5 0.05
27 87 0.91
28 4 0.04
ACGTcount: A:0.17, C:0.16, G:0.25, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTATGGGGGTATTTTGGTC
Found at i:4705713 original size:54 final size:53
Alignment explanation
Indices: 4705650--4705808 Score: 147
Period size: 54 Copynumber: 3.0 Consensus size: 53
4705640 GGGCAAATCA
* * * *
4705650 GTCATTTTACCTTACATGGGTAATACAGTTATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTACAGGGGTAATACAGTCATTTTACCCTATAGGGGTA-TTTG
** * ***
4705704 GTCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTG
1 GTCATTTTACCCTACAGGGGTAATACAGTCATTTTACCCTATAGGGGTATTTG
** * * * * *
4705757 GATCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCCATGGGGGTATT
1 G-TCATTTTACCCTACAGGGGTAATACAGTCATTTTACCCTATAGGGGTATT
4705809 GTGCTCACCA
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
53 5 0.05
54 86 0.95
ACGTcount: A:0.19, C:0.16, G:0.23, T:0.42
Consensus pattern (53 bp):
GTCATTTTACCCTACAGGGGTAATACAGTCATTTTACCCTATAGGGGTATTTG
Found at i:4707196 original size:46 final size:45
Alignment explanation
Indices: 4707146--4707321 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
4707136 TGTTTGGGCA
4707146 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
4707192 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
4707239 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
4707285 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
4707322 GTGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:4707301 original size:93 final size:93
Alignment explanation
Indices: 4707142--4707313 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
4707132 AGGATGTTTG
* *
4707142 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
4707207 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCAAGTTCGAGAGATGTAACTA
* *
4707235 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
4707300 TTGAGTCCAAGTTC
66 TTGAGTCCAAGTTC
4707314 ACTTATGGGT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCAAGTTCGAGAGATGTAACTA
Found at i:4710197 original size:11 final size:11
Alignment explanation
Indices: 4710161--4710216 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
4710151 CATGGTATGT
4710161 ATGATATGCAC
1 ATGATATGCAC
* *
4710172 ATGACATG--T
1 ATGATATGCAC
4710181 ATGATATGCAC
1 ATGATATGCAC
*
4710192 ATGATATG--T
1 ATGATATGCAC
4710201 ATGATATGCAC
1 ATGATATGCAC
4710212 ATGAT
1 ATGAT
4710217 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:4710216 original size:20 final size:20
Alignment explanation
Indices: 4710150--4710216 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
4710140 ATTTTGATAA
*
4710150 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
4710170 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
4710190 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
4710210 ACATGAT
1 ACATGAT
4710217 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:4710322 original size:24 final size:24
Alignment explanation
Indices: 4710266--4710436 Score: 256
Period size: 24 Copynumber: 7.2 Consensus size: 24
4710256 GAGGAAGTGG
4710266 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
4710289 TAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
4710313 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
4710337 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
* *
4710361 AAAAGGGCTTACGCCTCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
4710384 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
4710408 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
4710432 AAAAG
1 AAAAG
4710437 AGGTAAGGCC
Statistics
Matches: 134, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
23 41 0.31
24 93 0.69
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:4710335 original size:47 final size:47
Alignment explanation
Indices: 4710266--4710434 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
4710256 GAGGAAGTGG
*
4710266 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
4710313 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
* * *
4710361 AAAAGGGCTTACGCCTCAGTTATTAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
4710408 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
4710435 AGAGGTAAGG
Statistics
Matches: 112, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
47 69 0.62
48 43 0.38
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:4710448 original size:71 final size:73
Alignment explanation
Indices: 4710266--4710455 Score: 273
Period size: 71 Copynumber: 2.7 Consensus size: 73
4710256 GAGGAAGTGG
*
4710266 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCC-CTAGTTATCAAAAGGGCTTATGCCC
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTACGCCTCTAGTTATCAAAAGGGCTTATGCCC
*
4710329 CAGTTATC
66 CAGTTATA
* *
4710337 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCTC-AGTTAT-TAAAGGGCTTATGCCC
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTACGCCTCTAGTTATCAAAAGGGCTTATGCCC
4710400 CAGTTATA
66 CAGTTATA
* * *
4710408 AAAAGGGCTTTTGCCCCAGTTATTAAAAGAGG-TAAGGCCTCTAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTACGCCTCTAGTTAT
4710456 ATGATAAAGC
Statistics
Matches: 107, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
71 79 0.74
72 27 0.25
73 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (73 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTACGCCTCTAGTTATCAAAAGGGCTTATGCCC
CAGTTATA
Found at i:4710684 original size:31 final size:31
Alignment explanation
Indices: 4710649--4710712 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
4710639 CGTTTACAGT
*
4710649 AAAGGCTTCGGCCCAATAATATGAAATTTGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
* **
4710680 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
4710711 AA
1 AA
4710713 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATAATATGAAATATGA
Found at i:4711685 original size:85 final size:85
Alignment explanation
Indices: 4711542--4711805 Score: 519
Period size: 85 Copynumber: 3.1 Consensus size: 85
4711532 GGCCGGCCAT
4711542 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
4711607 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
4711627 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
4711692 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
4711712 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
4711777 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
4711797 GGGCATGGG
1 GAGCATGGG
4711806 CAATAAAATA
Statistics
Matches: 178, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 178 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:4714048 original size:47 final size:47
Alignment explanation
Indices: 4713995--4714623 Score: 837
Period size: 47 Copynumber: 13.2 Consensus size: 47
4713985 TAGGATTTTA
* * *
4713995 GGCCACTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAAT
1 GGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAAT
* * *
4714042 GGCCACTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAAT
1 GGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAAT
* * *
4714089 GGCCACTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAAT
1 GGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAAT
* * *
4714136 GGCCACTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAAT
1 GGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAAT
**
4714183 GGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAAT
1 GGCCAATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAAT
* *
4714234 GGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAAT
1 GGCCAATGTGATGAATGTGAACA-TGCATATGTGTGATAAGGCCGAAT
* *
4714281 GGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGACGAAT
1 GGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAAT
* * *
4714328 GGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAAT
1 GGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAAT
** *
4714375 GGCCAATGTGATGAATGTGAACCTGTATAAATATATGCGTGATAAGGCCGAAT
1 GGCCAATGTGATGAATGTGAA-C---AT--GCATATGTGTGATAAGGCCGAAT
** *
4714428 GGCCAATGTGATGAATGTGAACATGTGTATGTGTGACAAGGCCGAAT
1 GGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAAT
* *
4714475 GGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGGAT
1 GGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAAT
* *
4714522 GGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAAT
1 GGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAAT
* * *
4714569 GGCCAATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAAT
1 GGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAAT
*
4714616 GGCTAATG
1 GGCCAATG
4714624 CGAAACGTGT
Statistics
Matches: 533, Mismatches: 37, Indels: 24
0.90 0.06 0.04
Matches are distributed among these distances:
46 1 0.00
47 441 0.83
48 2 0.00
49 3 0.01
51 45 0.08
52 1 0.00
53 40 0.08
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (47 bp):
GGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAAT
Found at i:4714245 original size:22 final size:22
Alignment explanation
Indices: 4714218--4714292 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
4714208 TATATATATG
4714218 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
4714240 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
4714265 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
4714287 TGTGAT
1 TGTGAT
4714293 GAATGTGAGC
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 14 0.37
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:4714341 original size:25 final size:25
Alignment explanation
Indices: 4714266--4714341 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
4714256 GTGTATATAT
*
4714266 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGACGAATGGCCAATGTG
* * *
4714291 ATGA-ATGTGA-GCAT-G-CATATGT-
1 GTGATAAG-GACGAATGGCCA-ATGTG
4714313 GTGATAAGGACGAATGGCCAATGTG
1 GTGATAAGGACGAATGGCCAATGTG
4714338 GTGA
1 GTGA
4714342 ATATGAACAT
Statistics
Matches: 37, Mismatches: 7, Indels: 14
0.64 0.12 0.24
Matches are distributed among these distances:
22 7 0.19
23 10 0.27
24 10 0.27
25 10 0.27
ACGTcount: A:0.30, C:0.12, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGACGAATGGCCAATGTG
Found at i:4714493 original size:194 final size:192
Alignment explanation
Indices: 4714022--4714623 Score: 926
Period size: 194 Copynumber: 3.1 Consensus size: 192
4714012 TGAACATGCG
* * *
4714022 TATGTGTGATAAGGCCGAATGGCCACTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGA
* * * *
4714087 ATGGCCACTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCACTGTGATGGAT
66 ATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
* *
4714152 GTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATA
131 GTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATA
* *
4714214 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCG
* * * *
4714278 AATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGACGAATGGCCAATGTGGTGAA
65 AATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAA
* *
4714343 TATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATAAATA
130 TGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTAT--ATA
* *
4714408 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGACAAGGCCGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGA
*
4714473 ATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGGATGGCCAATGTGATGAAT
66 ATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
* **
4714538 GTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG-A-ATA
131 GTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATA
*
4714598 TATGTG-G-TAAGGCCGAATGGCTAATG
1 TATGTGTGATAAGGCCGAATGGCCAATG
4714624 CGAAACGTGT
Statistics
Matches: 375, Mismatches: 31, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
188 18 0.05
189 1 0.00
190 8 0.02
191 1 0.00
192 170 0.45
193 1 0.00
194 175 0.47
195 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.26
Consensus pattern (192 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
GTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATA
Found at i:4714686 original size:46 final size:46
Alignment explanation
Indices: 4714597--4714687 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 46
4714587 GAACATGAAT
* * * * *
4714597 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGCACGAGATGG
* * *
4714643 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGCACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGCACGAGATG
4714688 TGTATATATA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.33, C:0.11, G:0.32, T:0.24
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGCACGAGATGG
Found at i:4714873 original size:37 final size:37
Alignment explanation
Indices: 4714823--4714905 Score: 123
Period size: 37 Copynumber: 2.2 Consensus size: 37
4714813 ACATGAAACT
* *
4714823 TGGAGATTATGTCCGGGTAAGACCCGATGACTACG-TG
1 TGGAGATTTTGTCCGGGTAAGACCCGATAACT-CGATG
*
4714860 TGGAGATTTTGTCCGGGTAAGACCCGATAACTTGATG
1 TGGAGATTTTGTCCGGGTAAGACCCGATAACTCGATG
4714897 TGGAGATTT
1 TGGAGATTT
4714906 CGTCTGAGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
36 1 0.02
37 41 0.98
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (37 bp):
TGGAGATTTTGTCCGGGTAAGACCCGATAACTCGATG
Found at i:4716662 original size:30 final size:30
Alignment explanation
Indices: 4716627--4716683 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
4716617 TTTAAGAGTC
*
4716627 TAGGGGC-AAATATGTAATTTTGACAAAGTT
1 TAGGGGCAAAAT-TATAATTTTGACAAAGTT
*
4716657 TAGGGGCAAAATTATAATTTTTACAAA
1 TAGGGGCAAAATTATAATTTTGACAAA
4716684 ATATGATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.33
Consensus pattern (30 bp):
TAGGGGCAAAATTATAATTTTGACAAAGTT
Found at i:4727652 original size:93 final size:93
Alignment explanation
Indices: 4727545--4727809 Score: 469
Period size: 93 Copynumber: 2.8 Consensus size: 93
4727535 CGCCCATAAG
* * *
4727545 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCAGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
4727609 AATGAGTTCGGATGCCTAGTTACATCTCA
65 AATGAGTTCGGATGCCTAGTTACATCTCA
4727638 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
4727703 ATGAGTTCGGATGCCTAGTTACATCTCA
66 ATGAGTTCGGATGCCTAGTTACATCTCA
4727731 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
**
4727796 CCGAGTTCGGATGC
66 ATGAGTTCGGATGC
4727810 TCAACCATCC
Statistics
Matches: 166, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
92 2 0.01
93 164 0.99
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ATGAGTTCGGATGCCTAGTTACATCTCA
Found at i:4727656 original size:47 final size:47
Alignment explanation
Indices: 4727592--4727760 Score: 204
Period size: 47 Copynumber: 3.6 Consensus size: 47
4727582 ATCCATAAGT
* *
4727592 GAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
4727639 GAACTCAGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
* *
4727685 GAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
4727732 GAACTCAGACTCAACTCAACGAGTTCGGA
1 GAACTCAGACTCAACTCAACGAGTTCGGA
4727761 CATTCGCATC
Statistics
Matches: 101, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 27 0.27
47 54 0.53
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:4727804 original size:46 final size:46
Alignment explanation
Indices: 4727538--4727806 Score: 250
Period size: 46 Copynumber: 5.8 Consensus size: 46
4727528 TGTAACCCGC
* *
4727538 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* * *
4727584 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
4727634 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
4727677 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
4727727 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
4727770 CCATAAGTGAACTCGGACTCAACTCACCGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
4727807 TGCTCAACCA
Statistics
Matches: 180, Mismatches: 24, Indels: 38
0.74 0.10 0.16
Matches are distributed among these distances:
42 4 0.02
43 8 0.04
44 4 0.02
45 6 0.03
46 85 0.47
47 54 0.30
48 4 0.02
49 4 0.02
50 7 0.04
51 4 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:4734637 original size:51 final size:51
Alignment explanation
Indices: 4734554--4734660 Score: 196
Period size: 51 Copynumber: 2.1 Consensus size: 51
4734544 CAATCAAATG
*
4734554 TAACACCCCTAACCCGTATCCGTCTCCAGAATGGGGTTACGAGGCATTTCC
1 TAACACCCCTAACCCGTATCCGTCACCAGAATGGGGTTACGAGGCATTTCC
*
4734605 TAACACCCCTAACCCGTATCCGTCACCGGAATGGGGTTACGAGGCATTTCC
1 TAACACCCCTAACCCGTATCCGTCACCAGAATGGGGTTACGAGGCATTTCC
4734656 TAACA
1 TAACA
4734661 TAACACAACT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.22
Consensus pattern (51 bp):
TAACACCCCTAACCCGTATCCGTCACCAGAATGGGGTTACGAGGCATTTCC
Found at i:4735704 original size:28 final size:28
Alignment explanation
Indices: 4735666--4735761 Score: 99
Period size: 28 Copynumber: 3.4 Consensus size: 28
4735656 TAATTTCGCA
*
4735666 CACACACAGTGCCTTACACCCGATCTCG
1 CACACATAGTGCCTTACACCCGATCTCG
** *
4735694 CACACATAGTGCTCGATTA-A--TAATTTCG
1 CACACATAGTGC-C--TTACACCCGATCTCG
*
4735722 CACACATAGTGGCTTACACCCGATCTCG
1 CACACATAGTGCCTTACACCCGATCTCG
4735750 CACACATAGTGC
1 CACACATAGTGC
4735762 TTGGTTAATA
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 1 0.02
28 43 0.81
29 1 0.02
30 1 0.02
31 3 0.06
ACGTcount: A:0.28, C:0.33, G:0.16, T:0.23
Consensus pattern (28 bp):
CACACATAGTGCCTTACACCCGATCTCG
Found at i:4735743 original size:56 final size:56
Alignment explanation
Indices: 4735654--4735789 Score: 218
Period size: 56 Copynumber: 2.4 Consensus size: 56
4735644 ATATTCCCTA
*
4735654 AATAATTTCGCACACACACAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGATT
1 AATAATTTCG--CACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGATT
* * *
4735712 AATAATTTCGCACACATAGTGGCTTACACCCGATCTCGCACACATAGTGCTTGGTT
1 AATAATTTCGCACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGATT
4735768 AATAATTTCGCACACATAGTGC
1 AATAATTTCGCACACATAGTGC
4735790 ATATATTCAT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
56 63 0.86
58 10 0.14
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (56 bp):
AATAATTTCGCACACATAGTGCCTTACACCCGATCTCGCACACATAGTGCTCGATT
Found at i:4741630 original size:20 final size:21
Alignment explanation
Indices: 4741589--4741631 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
4741579 AAACTTGTAT
*
4741589 ATCTATCAACAAGCATTCAAA
1 ATCTATCAACAAACATTCAAA
*
4741610 ATCTATCATCAAACA-TCAAA
1 ATCTATCAACAAACATTCAAA
4741630 AT
1 AT
4741632 ACATGCTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.49, C:0.23, G:0.02, T:0.26
Consensus pattern (21 bp):
ATCTATCAACAAACATTCAAA
Found at i:4742825 original size:40 final size:41
Alignment explanation
Indices: 4742765--4742863 Score: 130
Period size: 40 Copynumber: 2.5 Consensus size: 41
4742755 GGTGCTCAAA
* *
4742765 CGAGTCATACCTACTAAATCTACTAAAATGTATGTGCT-TT
1 CGAGCCATACCTACTAAATCTACTAAAACGTATGTGCTCTT
* * *
4742805 CGAGCCATACCTATTGAATCTACTTAAACGTATGTGCTCTT
1 CGAGCCATACCTACTAAATCTACTAAAACGTATGTGCTCTT
*
4742846 -AAGCCATACCTACTAAAT
1 CGAGCCATACCTACTAAAT
4742864 TTATTGAAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
40 48 0.96
41 2 0.04
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.32
Consensus pattern (41 bp):
CGAGCCATACCTACTAAATCTACTAAAACGTATGTGCTCTT
Found at i:4745820 original size:47 final size:49
Alignment explanation
Indices: 4745698--4745876 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 49
4745688 TGTAACCCGC
* *
4745698 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCGG--G-C-GTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACAT
* *
4745744 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACAT
* * *
4745794 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
*
4745837 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
4745877 TCAACCATCC
Statistics
Matches: 112, Mismatches: 10, Indels: 19
0.79 0.07 0.13
Matches are distributed among these distances:
43 6 0.05
44 2 0.02
45 2 0.02
46 61 0.54
47 29 0.26
48 3 0.03
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
Found at i:4745866 original size:93 final size:93
Alignment explanation
Indices: 4745707--4745876 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
4745697 CCCATAAGCA
* * *
4745707 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATGAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
4745772 GAGTTCGGATGCCTAGTTACATCTCACG
66 GAGTTCGGATGCCTAGTTACATCTCACG
* **
4745800 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
4745865 GAGTTCGGATGC
66 GAGTTCGGATGC
4745877 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACG
Found at i:4756590 original size:53 final size:54
Alignment explanation
Indices: 4756476--4756704 Score: 187
Period size: 53 Copynumber: 4.4 Consensus size: 54
4756466 CATGACTTTT
* * * * *
4756476 CATGGTCTTACATGGTATCC-T---TT-TGAAACTTACCATTTCCATGTCTCGA
1 CATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGCCTTGG
* *
4756525 CATGGTCGTACATGGTATCCTTGCCTTATG-AACTCACCAATGCCATGCCTTGG
1 CATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGCCTTGG
* * * *
4756578 CATGGTCTTACATGG-AACCTTTGCCTTATAGTAACTTATCAATGCCATG--AT--
1 CATGGTCTTACATGGTATCC-TTGCCTTAT-GAAACTTACCAATGCCATGCCTTGG
* * ** *
4756629 -ATGGTCTTACATGATATCATTGCCTTA-GAAACCTTACCAATTTACATGCCCTGG
1 CATGGTCTTACATGGTATCCTTGCCTTATGAAA-CTTACCAA-TGCCATGCCTTGG
4756683 CATGGTCTTACATGGTATCCTT
1 CATGGTCTTACATGGTATCCTT
4756705 AAACCCTAAT
Statistics
Matches: 142, Mismatches: 22, Indels: 26
0.75 0.12 0.14
Matches are distributed among these distances:
48 3 0.02
49 26 0.18
50 27 0.19
51 2 0.01
52 4 0.03
53 43 0.30
54 3 0.02
55 34 0.24
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (54 bp):
CATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGCCTTGG
Found at i:4787189 original size:110 final size:108
Alignment explanation
Indices: 4786994--4787258 Score: 395
Period size: 110 Copynumber: 2.4 Consensus size: 108
4786984 ATAAGAATAT
* * ** * *
4786994 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTGTAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGCAAGGAAACCATGTAAAACC
*
4787059 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGTGCAAAGGTTC
65 ATGTCAAGACATGGCATTGATGAGTTACTATAA-G-GCAAAGGTCC
* * *
4787105 GATGTAAGACCATGCCAAGGCATGGAATTGGTGAGTTCATAAGGCAAGGATACCATGTAAAACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGAAACCATGTAAAACCA
4787170 TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
* *
4787213 CATGTAAGACTATGCCAAGGCATGGCATTAGTGAGTTCATAAGGCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCA
4787259 TGGCATTAGT
Statistics
Matches: 140, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
108 51 0.36
109 1 0.01
110 57 0.41
111 31 0.22
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGAAACCATGTAAAACCA
TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
Found at i:4787219 original size:55 final size:55
Alignment explanation
Indices: 4786994--4787258 Score: 292
Period size: 55 Copynumber: 4.9 Consensus size: 55
4786984 ATAAGAATAT
* * * * *
4786994 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTGTAAGGC-AAGGAAAT
1 CATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGCAAAGGATAC
* * *
4787048 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGTGCAAAGG-TTC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAA-G-GCAAAGGATAC
* * *
4787105 GATGTAAGACCATGCCAAGGCATGGAATTGGTGAGTTC-ATAAGGC-AAGGATAC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGCAAAGGATAC
* * * *
4787158 CATGTAAAACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGCAAAGGATAC
*
4787213 CATGTAAGACTATGCCAAGGCATGGCATT-AGTGAGTTC-ATAAGGCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGA-TGAGTTCTATAAGGCA
4787259 TGGCATTAGT
Statistics
Matches: 177, Mismatches: 25, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
52 4 0.02
53 43 0.24
54 38 0.21
55 48 0.27
56 6 0.03
57 34 0.19
58 4 0.02
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (55 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGCAAAGGATAC
Found at i:4787261 original size:24 final size:24
Alignment explanation
Indices: 4787229--4787276 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
4787219 AGACTATGCC
4787229 AAGGCATGGCATTAGTGAGTTCAT
1 AAGGCATGGCATTAGTGAGTTCAT
4787253 AAGGCATGGCATTAGTGAGTTCAT
1 AAGGCATGGCATTAGTGAGTTCAT
4787277 GGCATTAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (24 bp):
AAGGCATGGCATTAGTGAGTTCAT
Found at i:4798182 original size:74 final size:74
Alignment explanation
Indices: 4798038--4798185 Score: 251
Period size: 74 Copynumber: 2.0 Consensus size: 74
4798028 ATAATTATTT
*
4798038 TGATGAATATGATATGATTGCATGATTGTGTGAAAATTTCGTGATGAAATTCTATGCCTAAAGCG
1 TGATGAATATGATATGATTGCATGATTGTGTGAAAATTTCGTGATGAAATTCTATGCCTAAAACG
*
4798103 GTTAAATTG
66 CTTAAATTG
* * *
4798112 TGATGATTATGATATGATTGCATGATTGTGTGAAAATTTCGTGATGAAATTCTATGTCTAAAATG
1 TGATGAATATGATATGATTGCATGATTGTGTGAAAATTTCGTGATGAAATTCTATGCCTAAAACG
4798177 CTTAAATTG
66 CTTAAATTG
4798186 AAAGTAGGGA
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.39
Consensus pattern (74 bp):
TGATGAATATGATATGATTGCATGATTGTGTGAAAATTTCGTGATGAAATTCTATGCCTAAAACG
CTTAAATTG
Found at i:4799371 original size:46 final size:46
Alignment explanation
Indices: 4799321--4799493 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
4799311 TGGTTGAGCA
4799321 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
4799367 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
4799412 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
4799460 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
4799494 GGGGCGGTTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.55
47 28 0.26
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:4799477 original size:93 final size:93
Alignment explanation
Indices: 4799318--4799488 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
4799308 GGATGGTTGA
*
4799318 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
*
4799383 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCAAGTTCGTGAGATGTAACTAG
* *
4799411 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
4799476 TGAGTCCAAGTTC
66 TGAGTCCAAGTTC
4799489 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAGATGTAACTAG
Found at i:4805334 original size:19 final size:19
Alignment explanation
Indices: 4805310--4805349 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
4805300 TAGATCAATG
4805310 ATAGAGTATTCTTGAAAGT
1 ATAGAGTATTCTTGAAAGT
*
4805329 ATAGAGTATTCTTGGAAGT
1 ATAGAGTATTCTTGAAAGT
4805348 AT
1 AT
4805350 CTCCATGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.38
Consensus pattern (19 bp):
ATAGAGTATTCTTGAAAGT
Found at i:4811387 original size:37 final size:37
Alignment explanation
Indices: 4811337--4811415 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
4811327 TTATTACGAA
* * *
4811337 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
4811374 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
4811411 GTCTT
1 GTCTT
4811416 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:4811657 original size:51 final size:51
Alignment explanation
Indices: 4811601--4811917 Score: 435
Period size: 47 Copynumber: 6.5 Consensus size: 51
4811591 ATATACACTT
4811601 TTAGGCCTTATTACATATATACATACACTTTCACATTCATCACATCGGCCA
1 TTAGGCCTTATTACATATATACATACACTTTCACATTCATCACATCGGCCA
* * *
4811652 TTAGGCCTTA-T-CACATAT--ATACACTTTCACATTCATCACGTCGGCTA
1 TTAGGCCTTATTACATATATACATACACTTTCACATTCATCACATCGGCCA
* * *
4811699 TTAGGCCTTA-T-CACACAT--ATACACTTTCACATTCATCACATCGGCTA
1 TTAGGCCTTATTACATATATACATACACTTTCACATTCATCACATCGGCCA
* *
4811746 TTAGGCCTTA-T-CACACAT--ATACACTTTCACATTCATCACATCGGCTC-
1 TTAGGCCTTATTACATATATACATACACTTTCACATTCATCACATCGGC-CA
*
4811793 TTAGGCCTTATTACATATATACATATACTTTCACATTCATCACATCGGCCA
1 TTAGGCCTTATTACATATATACATACACTTTCACATTCATCACATCGGCCA
* *
4811844 TTAGGCCTTATCACATATATACATACACTTTCACATTCATCACATCGGCTA
1 TTAGGCCTTATTACATATATACATACACTTTCACATTCATCACATCGGCCA
4811895 TTAGGCCTTATTACATATATACA
1 TTAGGCCTTATTACATATATACA
4811918 CTCTCTTGGC
Statistics
Matches: 247, Mismatches: 13, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
47 127 0.51
48 1 0.00
49 11 0.04
50 2 0.01
51 106 0.43
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (51 bp):
TTAGGCCTTATTACATATATACATACACTTTCACATTCATCACATCGGCCA
Found at i:4811862 original size:43 final size:43
Alignment explanation
Indices: 4811813--4811913 Score: 112
Period size: 51 Copynumber: 2.2 Consensus size: 43
4811803 TTACATATAT
4811813 ACATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 ACATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
* *
4811856 ACATATATACATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATT
1 AC----AT--AT--ACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
4811907 ACATATA
1 ACATATA
4811914 TACACTCTCT
Statistics
Matches: 48, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
43 3 0.06
45 2 0.04
47 4 0.08
49 2 0.04
51 37 0.77
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.34
Consensus pattern (43 bp):
ACATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
Found at i:4818706 original size:37 final size:37
Alignment explanation
Indices: 4818656--4818734 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
4818646 TTATTACGAA
* * *
4818656 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
4818693 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
4818730 GTCTT
1 GTCTT
4818735 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:4818931 original size:47 final size:47
Alignment explanation
Indices: 4818853--4819134 Score: 485
Period size: 47 Copynumber: 6.0 Consensus size: 47
4818843 CCCTTCGGGA
* * * * * *
4818853 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
4818900 CCTGTCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4818946 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4818993 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4819040 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4819087 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4819134 C
1 C
4819135 ATACTATCAT
Statistics
Matches: 224, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
46 42 0.19
47 182 0.81
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:4822638 original size:15 final size:15
Alignment explanation
Indices: 4822606--4822634 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
4822596 ATTTTTTGTG
4822606 TTTATAATGTGTGAA
1 TTTATAATGTGTGAA
4822621 TTTAT-ATGTGTGAA
1 TTTATAATGTGTGAA
4822635 ATTTTCGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (15 bp):
TTTATAATGTGTGAA
Found at i:4840723 original size:46 final size:47
Alignment explanation
Indices: 4840651--4840755 Score: 140
Period size: 46 Copynumber: 2.2 Consensus size: 47
4840641 GACAGGACAG
* * *
4840651 GACAGAAATGAGCCATGTAAGTCCATATCAG-ATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAGAATATATGGCATTGGA
*
4840697 GACAGGAATGAGCCATGTAAGCCCATATTAGATAAATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAG---AATATATGGCATTGGA
4840747 GACAGGAAT
1 GACAGGAAT
4840756 AATTCATGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
46 28 0.55
50 23 0.45
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.24
Consensus pattern (47 bp):
GACAGGAATGAGCCATGTAAGCCCATATCAGAATATATGGCATTGGA
Found at i:4849232 original size:46 final size:46
Alignment explanation
Indices: 4849179--4850083 Score: 1699
Period size: 46 Copynumber: 19.7 Consensus size: 46
4849169 TTGAGCATCC
4849179 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
4849225 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
4849271 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
4849317 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
4849363 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
4849409 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
4849455 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
4849501 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
4849547 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
4849593 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
4849639 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
4849685 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
4849731 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
4849777 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
4849823 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
4849869 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
4849915 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
* *
4849961 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAACTAG-G-CA-TCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG-A-T-GCGAAAGTCT
* * *
4850007 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
* *
4850053 GAGCTCGTTGAGTTGAGACCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
4850084 GGGGCGGGTT
Statistics
Matches: 846, Mismatches: 7, Indels: 12
0.98 0.01 0.01
Matches are distributed among these distances:
43 1 0.00
44 2 0.00
45 1 0.00
46 837 0.99
47 2 0.00
48 2 0.00
49 1 0.00
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
Found at i:4855423 original size:40 final size:40
Alignment explanation
Indices: 4855363--4855483 Score: 206
Period size: 40 Copynumber: 3.0 Consensus size: 40
4855353 CGGATGTAAC
* * *
4855363 AACCAGCACGAATGCCTTCGGGACTTAGCCCGATTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
4855403 AACCCGCACGAATGCCTTCGGGACTTAACTCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
4855443 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
4855483 A
1 A
4855484 GCTAGCACAA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:4855499 original size:40 final size:40
Alignment explanation
Indices: 4855363--4855543 Score: 204
Period size: 40 Copynumber: 4.5 Consensus size: 40
4855353 CGGATGTAAC
* *
4855363 AACCAGCACGAATGCCTTCGGGACTTAGCCCGATTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
4855403 AACCCGCACGAATGCCTTCGGGACTTAACTCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
4855443 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* * ** * *
4855483 AGCTAGCAC-AATTGCCTTC-GGATCTTAGTCCGGATATAGT
1 AACCAGCACGAA-TGCCTTCGGGA-CTTAACCCGGTTATAAT
* * *
4855523 GACTAGCACAAATGCCTTCGG
1 AACCAGCACGAATGCCTTCGG
4855544 ATCTTAGTCC
Statistics
Matches: 123, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
39 5 0.04
40 115 0.93
41 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:4857077 original size:13 final size:13
Alignment explanation
Indices: 4857059--4857084 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4857049 TATTTTATTT
4857059 TTAACATAAAATA
1 TTAACATAAAATA
4857072 TTAACATAAAATA
1 TTAACATAAAATA
4857085 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:4860679 original size:48 final size:48
Alignment explanation
Indices: 4860621--4860715 Score: 181
Period size: 48 Copynumber: 2.0 Consensus size: 48
4860611 TCGTATTAAA
4860621 TGCTGTTTTGATGAATGTATGTATTAAATAAGATTAATTTGGCATTAC
1 TGCTGTTTTGATGAATGTATGTATTAAATAAGATTAATTTGGCATTAC
*
4860669 TGCTGTTTTGATGAATGTATGTATTGAATAAGATTAATTTGGCATTA
1 TGCTGTTTTGATGAATGTATGTATTAAATAAGATTAATTTGGCATTA
4860716 TAGATCAAGA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.31, C:0.05, G:0.20, T:0.44
Consensus pattern (48 bp):
TGCTGTTTTGATGAATGTATGTATTAAATAAGATTAATTTGGCATTAC
Found at i:4876846 original size:14 final size:15
Alignment explanation
Indices: 4876810--4876839 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
4876800 GAATGTTACA
4876810 AAAAATATATATAAG
1 AAAAATATATATAAG
4876825 TAAAAATATATATAA
1 -AAAAATATATATAA
4876840 ACAAATAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (15 bp):
AAAAATATATATAAG
Found at i:4877908 original size:16 final size:15
Alignment explanation
Indices: 4877887--4877921 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
4877877 TAAACATTAT
4877887 AAAGGAAAAAGAAAAA
1 AAAGGAAAAA-AAAAA
*
4877903 AAAGGAAAAAAAAAG
1 AAAGGAAAAAAAAAA
4877918 AAAG
1 AAAG
4877922 ATAAATACTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (15 bp):
AAAGGAAAAAAAAAA
Found at i:4878863 original size:22 final size:22
Alignment explanation
Indices: 4878835--4878880 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
4878825 CAAACGTAGC
4878835 ATAAATATATTTTAGTATCTAT
1 ATAAATATATTTTAGTATCTAT
4878857 ATAAATATATTTTAGTATCTAT
1 ATAAATATATTTTAGTATCTAT
4878879 AT
1 AT
4878881 TGTATGTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (22 bp):
ATAAATATATTTTAGTATCTAT
Found at i:4898182 original size:47 final size:47
Alignment explanation
Indices: 4898131--4898306 Score: 255
Period size: 47 Copynumber: 3.7 Consensus size: 47
4898121 TTAGGATTCT
* *
4898131 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
4898178 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
4898225 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
4898272 ATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
4898307 TCCCGAAGGG
Statistics
Matches: 117, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
46 1 0.01
47 116 0.99
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:4898482 original size:37 final size:37
Alignment explanation
Indices: 4898425--4898503 Score: 101
Period size: 37 Copynumber: 2.1 Consensus size: 37
4898415 CCGAGCTCTA
*
4898425 AAGACCCGATGACTACGTGTGG-GAATT-TGGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTAT-GTCCGGGT
4898462 AAGACCCGATAACTTA-GTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAAC-TACGTGTGGAGATTATGTCCGGGT
4898499 AAGAC
1 AAGAC
4898504 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
37 34 0.89
38 4 0.11
ACGTcount: A:0.27, C:0.18, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:4900405 original size:43 final size:43
Alignment explanation
Indices: 4900357--4900459 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
4900347 TTGGTTTTCA
*
4900357 GCACTAACTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
4900400 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
4900443 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
4900460 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.22, C:0.17, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:4900476 original size:29 final size:29
Alignment explanation
Indices: 4900441--4900514 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
4900431 GTTGTGAGAT
* *
4900441 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
4900470 TGGCACTAAGTGTGTGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
4900499 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
4900515 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:4900924 original size:40 final size:40
Alignment explanation
Indices: 4900839--4900967 Score: 181
Period size: 40 Copynumber: 3.2 Consensus size: 40
4900829 TTGAATGATG
*
4900839 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGATATA
* *
4900878 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
4900918 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
4900958 TCCGTGCTAA
1 TCCGGGCTAA
4900968 ACCTCGAAAA
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 18 0.22
40 55 0.69
41 7 0.09
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:4904103 original size:40 final size:40
Alignment explanation
Indices: 4904014--4904317 Score: 431
Period size: 40 Copynumber: 7.7 Consensus size: 40
4904004 TTGAATGATG
* * *
4904014 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
** * *
4904053 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
4904093 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
4904132 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
4904172 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
4904212 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
4904252 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
4904293 -CCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
4904318 AACGAGGAGC
Statistics
Matches: 246, Mismatches: 12, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
39 53 0.22
40 183 0.74
41 10 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:4914677 original size:46 final size:46
Alignment explanation
Indices: 4914610--4914785 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
4914600 TGTAACCCGC
*
4914610 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * * * *
4914656 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACG-TTCGCAT
* * * *
4914702 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
** *
4914749 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
4914786 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
45 2 0.02
46 70 0.65
47 33 0.31
48 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:4914725 original size:93 final size:93
Alignment explanation
Indices: 4914617--4914788 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
4914607 CGCCCATAAG
* * *
4914617 CGAACTCGGACTCAACTCAATGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
4914682 ACGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
*
4914710 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
4914775 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
4914789 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:4918745 original size:22 final size:22
Alignment explanation
Indices: 4918720--4918772 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
4918710 CACTAGGAAC
*
4918720 TATGTGAATATGAGCTCATG-GA
1 TATGTGAATATGAGAT-ATGTGA
* *
4918742 TATGTGTATATGTGATATGTGA
1 TATGTGAATATGAGATATGTGA
4918764 TATGTGAAT
1 TATGTGAAT
4918773 CCGAGTGCTG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 3 0.12
22 23 0.88
ACGTcount: A:0.30, C:0.04, G:0.26, T:0.40
Consensus pattern (22 bp):
TATGTGAATATGAGATATGTGA
Found at i:4918761 original size:7 final size:7
Alignment explanation
Indices: 4918740--4918770 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
4918730 TGAGCTCATG
4918740 GATATGT
1 GATATGT
4918747 GTATATGT
1 G-ATATGT
4918755 GATATGT
1 GATATGT
4918762 GATATGT
1 GATATGT
4918769 GA
1 GA
4918771 ATCCGAGTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (7 bp):
GATATGT
Found at i:4928218 original size:40 final size:40
Alignment explanation
Indices: 4928163--4928458 Score: 508
Period size: 40 Copynumber: 7.4 Consensus size: 40
4928153 GATGATAACG
* *
4928163 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
4928203 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
4928243 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
4928283 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
4928323 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
4928363 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
4928403 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
4928443 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
4928459 TACTTGGTTT
Statistics
Matches: 249, Mismatches: 5, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
39 16 0.06
40 232 0.93
41 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Done.