Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 144 of 297
Found at i:49676064 original size:40 final size:39
Alignment explanation
Indices: 49676004--49676114 Score: 141
Period size: 39 Copynumber: 2.8 Consensus size: 39
49675994 TCGAGAATAT
* *
49676004 AAAGTGGATAGGATTCGTTCCTGATTCACTATAATACCTC
1 AAAGTGGATAGGATTTGTTCCTGATTCACTAT-ATAACTC
* * * *
49676044 AAAGTGGATAGGATTTGTTCCTAATTCACTATGTAATTT
1 AAAGTGGATAGGATTTGTTCCTGATTCACTATATAACTC
* *
49676083 AAAGTGAATAGGATTTATTCCTGATTCACTAT
1 AAAGTGGATAGGATTTGTTCCTGATTCACTAT
49676115 GGTAACTTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
39 32 0.52
40 30 0.48
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (39 bp):
AAAGTGGATAGGATTTGTTCCTGATTCACTATATAACTC
Found at i:49676098 original size:39 final size:40
Alignment explanation
Indices: 49676003--49676139 Score: 159
Period size: 40 Copynumber: 3.5 Consensus size: 40
49675993 CTCGAGAATA
* * * *
49676003 TAAAGTGGATAGGATTCGTTCCTGATTCACTATAATACCT
1 TAAAGTGAATAGGATTTGTTCCTGATTCACTATAGTAACT
* * * *
49676043 CAAAGTGGATAGGATTTGTTCCTAATTCACTAT-GTAATT
1 TAAAGTGAATAGGATTTGTTCCTGATTCACTATAGTAACT
* *
49676082 TAAAGTGAATAGGATTTATTCCTGATTCACTATGGTAACT
1 TAAAGTGAATAGGATTTGTTCCTGATTCACTATAGTAACT
* *
49676122 TAAGGCGAATAGGATTTG
1 TAAAGTGAATAGGATTTG
49676140 ACCTGAAAAG
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 32 0.39
40 50 0.61
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (40 bp):
TAAAGTGAATAGGATTTGTTCCTGATTCACTATAGTAACT
Found at i:49676145 original size:39 final size:38
Alignment explanation
Indices: 49676023--49676145 Score: 104
Period size: 39 Copynumber: 3.1 Consensus size: 38
49676013 AGGATTCGTT
* * * * * *
49676023 CCTGATTCACTATAATACCTCAAAGTGGATAGGATTTGTT
1 CCTGATTCACTAT-GTAACTTAAAGCGAATAGGATTTG-A
* * *
49676063 CCTAATTCACTATGTAATTTAAAGTGAATAGGATTT-A
1 CCTGATTCACTATGTAACTTAAAGCGAATAGGATTTGA
*
49676100 TTCCTGATTCACTATGGTAACTTAAGGCGAATAGGATTTGA
1 --CCTGATTCACTAT-GTAACTTAAAGCGAATAGGATTTGA
49676141 CCTGA
1 CCTGA
49676146 AAAGGTAATC
Statistics
Matches: 68, Mismatches: 11, Indels: 9
0.77 0.12 0.10
Matches are distributed among these distances:
39 35 0.51
40 32 0.47
41 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (38 bp):
CCTGATTCACTATGTAACTTAAAGCGAATAGGATTTGA
Found at i:49676249 original size:78 final size:78
Alignment explanation
Indices: 49676104--49676252 Score: 237
Period size: 78 Copynumber: 1.9 Consensus size: 78
49676094 GATTTATTCC
* *
49676104 TGATTCACTATGGTAACTTAAGGCGAATAGGATTTGACCTGAAAAGGTAATCCTGATTCGCTTCA
1 TGATTCACTATGGTAACCTAAGGCGAATAGGATTTGACCTGAAAAGGTAATCCTGATTCGATTCA
49676169 GTTACATGATATA
66 GTTACATGATATA
* * *
49676182 TGATTCATTATGGTAACCTAAGGTGGATAGGATTTGACCTGAAAAGGTAATCCTGATTC-ATTAC
1 TGATTCACTATGGTAACCTAAGGCGAATAGGATTTGACCTGAAAAGGTAATCCTGATTCGATT-C
49676246 AGTTACA
65 AGTTACA
49676253 AGAGATGTGA
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
77 2 0.03
78 63 0.97
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (78 bp):
TGATTCACTATGGTAACCTAAGGCGAATAGGATTTGACCTGAAAAGGTAATCCTGATTCGATTCA
GTTACATGATATA
Found at i:49686438 original size:50 final size:50
Alignment explanation
Indices: 49686363--49686464 Score: 177
Period size: 50 Copynumber: 2.0 Consensus size: 50
49686353 ATATCCTGGA
* * *
49686363 ATATTAAGGTAAGAATTAGAACTCACAATTAAGAATAAGAACAAGTATTT
1 ATATTAAAGCAAGAATTAAAACTCACAATTAAGAATAAGAACAAGTATTT
49686413 ATATTAAAGCAAGAATTAAAACTCACAATTAAGAATAAGAACAAGTATTT
1 ATATTAAAGCAAGAATTAAAACTCACAATTAAGAATAAGAACAAGTATTT
49686463 AT
1 AT
49686465 CATATAAATC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.52, C:0.09, G:0.12, T:0.27
Consensus pattern (50 bp):
ATATTAAAGCAAGAATTAAAACTCACAATTAAGAATAAGAACAAGTATTT
Found at i:49702190 original size:9 final size:9
Alignment explanation
Indices: 49702176--49702208 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
49702166 TTGTTTTTGA
*
49702176 AGAAGATTG
1 AGAAGATGG
49702185 AGAAGATGG
1 AGAAGATGG
49702194 AGAAGATGG
1 AGAAGATGG
49702203 AGAAGA
1 AGAAGA
49702209 AATTGGGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.39, T:0.12
Consensus pattern (9 bp):
AGAAGATGG
Found at i:49702712 original size:15 final size:15
Alignment explanation
Indices: 49702692--49702721 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
49702682 AATTTACTTA
*
49702692 AAATAAAAATTAAAT
1 AAATAAAAATAAAAT
49702707 AAATAAAAATAAAAT
1 AAATAAAAATAAAAT
49702722 TGGGTTGCCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
AAATAAAAATAAAAT
Found at i:49709239 original size:5 final size:5
Alignment explanation
Indices: 49709229--49709281 Score: 70
Period size: 5 Copynumber: 10.0 Consensus size: 5
49709219 AACCTAAATT
*
49709229 AATAA AATAA AATAA AATAA AATAA TAATAAA TAATAA AATAA AACAA
1 AATAA AATAA AATAA AATAA AATAA -AAT-AA -AATAA AATAA AATAA
49709277 AATAA
1 AATAA
49709282 TATCTTCCTA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
5 33 0.75
6 5 0.11
7 6 0.14
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:49709249 original size:23 final size:23
Alignment explanation
Indices: 49709237--49709281 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
49709227 TTAATAAAAT
49709237 AAAATAAAATAAAATAATAATAA
1 AAAATAAAATAAAATAATAATAA
* *
49709260 ATAATAAAATAAAACAA-AATAA
1 AAAATAAAATAAAATAATAATAA
49709282 TATCTTCCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (23 bp):
AAAATAAAATAAAATAATAATAA
Found at i:49712727 original size:20 final size:21
Alignment explanation
Indices: 49712698--49712741 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
49712688 AGAATATGAT
49712698 AATTACAATTTGTAA-GTTATA
1 AATTACAATTT-TAATGTTATA
49712719 AATTA-AATTTTAATGTTATA
1 AATTACAATTTTAATGTTATA
49712739 AAT
1 AAT
49712742 ATTTTTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.14
20 14 0.64
21 5 0.23
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.45
Consensus pattern (21 bp):
AATTACAATTTTAATGTTATA
Found at i:49713163 original size:99 final size:95
Alignment explanation
Indices: 49713037--49713219 Score: 217
Period size: 95 Copynumber: 1.9 Consensus size: 95
49713027 GTTTAGGAAA
* * * * * *
49713037 TAATATTTTGTTAATCCAAATATGATGATCTGAATAGTAGTAAGGC-ATCAGTGT-TGTGGTCGA
1 TAATATTTTCTCAATACAAATATGATGATC-CAA-A-TAATAA-GCAATCAGTGTCTGT--TAGA
49713100 ACAAAATACAATATAGATAGGATTTATGTTGAAATG
60 ACAAAATACAATATAGATAGGATTTATGTTGAAATG
* *
49713136 TAATATTTTCTCAATACAGATATGATGATCCAAATAATAAGCAATCAGTGTCTGTTATAACAAAA
1 TAATATTTTCTCAATACAAATATGATGATCCAAATAATAAGCAATCAGTGTCTGTTAGAACAAAA
*
49713201 TACAGTATAGATAGGATTT
66 TACAATATAGATAGGATTT
49713220 TAATTTGATG
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
95 28 0.38
96 13 0.18
97 4 0.05
98 2 0.03
99 26 0.36
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.34
Consensus pattern (95 bp):
TAATATTTTCTCAATACAAATATGATGATCCAAATAATAAGCAATCAGTGTCTGTTAGAACAAAA
TACAATATAGATAGGATTTATGTTGAAATG
Found at i:49720417 original size:92 final size:92
Alignment explanation
Indices: 49720298--49720481 Score: 350
Period size: 92 Copynumber: 2.0 Consensus size: 92
49720288 TCCTTGATAG
*
49720298 CATTTTCAAGACACAAATAAATATAAAGTTTATCCATGTGGTATGGATAATTAACATTGCTACGT
1 CATTTTCAAGACACAAATAAATATAAAGTTTATCCATGTGGTATGGATAATTAACATAGCTACGT
49720363 TGAAAATTTGGAAATTGAGGGATGAGA
66 TGAAAATTTGGAAATTGAGGGATGAGA
*
49720390 CATTTTCAAGACACAAATAAATATAAAGTTTATCTATGTGGTATGGATAATTAACATAGCTACGT
1 CATTTTCAAGACACAAATAAATATAAAGTTTATCCATGTGGTATGGATAATTAACATAGCTACGT
49720455 TGAAAATTTGGAAATTGAGGGATGAGA
66 TGAAAATTTGGAAATTGAGGGATGAGA
49720482 TACAAGCCTA
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 90 1.00
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.32
Consensus pattern (92 bp):
CATTTTCAAGACACAAATAAATATAAAGTTTATCCATGTGGTATGGATAATTAACATAGCTACGT
TGAAAATTTGGAAATTGAGGGATGAGA
Found at i:49723286 original size:268 final size:268
Alignment explanation
Indices: 49722802--49723343 Score: 913
Period size: 268 Copynumber: 2.0 Consensus size: 268
49722792 TAATTAACAA
* * * *
49722802 ATCAAAACATTTGTCCCTTTTTTTATGAATTGAAACTTGTCTTGTTCTATCTTGCACTGGATATC
1 ATCAAAACATTTGTCCCTCTTTTTATGAATTGAAACTTGTCTTGCTCTATCCTGCACTGCATATC
** * *
49722867 CAATAAAAAATTGTTTTATTTTTTATACTAAGAAAGGAAGAATTGCAGAGAAGAAATAAAAATTT
66 CAATAAAAAATTGTTGGATTTTTTATACCAAGAAAGGAAGAATTGCAGAGAAAAAATAAAAATTT
* * *
49722932 AGCAACAAAACTATTTGCTAAACTTTTTATATTATATATTTTTCACATACCTAATGAACAAAGAA
131 AGCAACAAAACTATCTACTAAACTTTTTATATTATATATTTTTCACACACCTAATGAACAAAGAA
* * *
49722997 AGAAGAGAGGTATTTGTAACACAAAAAACTCCTAAATACAAAAAGAAATAACAAAGGTTTTATGT
196 AGAAGAGAGGTATTTGTAACACAAAAAACTCCTAAATAAAAAAAGAAATAACAAAGATTTTATGC
49723062 TAATAAAT
261 TAATAAAT
* *
49723070 ATCAAACCATTTGTCCCTCTTTTTATGAATTGAAACTTGTCTTGCTCTATCCTGCATTGCATATC
1 ATCAAAACATTTGTCCCTCTTTTTATGAATTGAAACTTGTCTTGCTCTATCCTGCACTGCATATC
*
49723135 CAATAAAAAATTGTTGGATTTTTTATACCAAGAAAGGAAGAATTGCATAGAAAAAATAAAAATTT
66 CAATAAAAAATTGTTGGATTTTTTATACCAAGAAAGGAAGAATTGCAGAGAAAAAATAAAAATTT
*
49723200 AGCAACAAAACTATCTATTAAACTTTTTATATTATATATTTTTCACACACCTAATGAACAAAGAA
131 AGCAACAAAACTATCTACTAAACTTTTTATATTATATATTTTTCACACACCTAATGAACAAAGAA
*
49723265 AGAAGAGAGGTATTTGTAACACAAAAAACTCTTAAATAAAAAAAGAAATAACAAAGATTTTATGC
196 AGAAGAGAGGTATTTGTAACACAAAAAACTCCTAAATAAAAAAAGAAATAACAAAGATTTTATGC
49723330 TAATAAAT
261 TAATAAAT
49723338 ATCAAA
1 ATCAAA
49723344 TATACTATGC
Statistics
Matches: 255, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
268 255 1.00
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.33
Consensus pattern (268 bp):
ATCAAAACATTTGTCCCTCTTTTTATGAATTGAAACTTGTCTTGCTCTATCCTGCACTGCATATC
CAATAAAAAATTGTTGGATTTTTTATACCAAGAAAGGAAGAATTGCAGAGAAAAAATAAAAATTT
AGCAACAAAACTATCTACTAAACTTTTTATATTATATATTTTTCACACACCTAATGAACAAAGAA
AGAAGAGAGGTATTTGTAACACAAAAAACTCCTAAATAAAAAAAGAAATAACAAAGATTTTATGC
TAATAAAT
Found at i:49723343 original size:24 final size:24
Alignment explanation
Indices: 49723310--49723362 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
49723300 ATAAAAAAAG
**
49723310 AAATAACAAAGATTTTATGCTAAT
1 AAATAACAAAGATACTATGCTAAT
* * *
49723334 AAATATCAAATATACTATGCTAGT
1 AAATAACAAAGATACTATGCTAAT
49723358 AAATA
1 AAATA
49723363 CTAATTCTCT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.51, C:0.09, G:0.08, T:0.32
Consensus pattern (24 bp):
AAATAACAAAGATACTATGCTAAT
Found at i:49723529 original size:18 final size:18
Alignment explanation
Indices: 49723506--49723567 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
49723496 TTATCGTGAG
49723506 TTCGCCAAGCTTAGGGGA
1 TTCGCCAAGCTTAGGGGA
*
49723524 TTCGCC-AGACTT-GGTGA
1 TTCGCCAAG-CTTAGGGGA
** *
49723541 GTTCATCAATCTTAGGGGA
1 -TTCGCCAAGCTTAGGGGA
49723560 TTCGCCAA
1 TTCGCCAA
49723568 ACTTGGCAAG
Statistics
Matches: 33, Mismatches: 7, Indels: 8
0.69 0.15 0.17
Matches are distributed among these distances:
17 6 0.18
18 22 0.67
19 5 0.15
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (18 bp):
TTCGCCAAGCTTAGGGGA
Found at i:49723541 original size:36 final size:36
Alignment explanation
Indices: 49723501--49723573 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
49723491 GGCACTTATC
* *
49723501 GTGAGTTCGCCAAGCTTAGGGGATTCGCCAGACTTG
1 GTGAGTTCACCAAGCTTAGGGGATTCGCCAAACTTG
* *
49723537 GTGAGTTCATCAATCTTAGGGGATTCGCCAAACTTG
1 GTGAGTTCACCAAGCTTAGGGGATTCGCCAAACTTG
49723573 G
1 G
49723574 CAAGTGCATG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (36 bp):
GTGAGTTCACCAAGCTTAGGGGATTCGCCAAACTTG
Found at i:49727676 original size:24 final size:24
Alignment explanation
Indices: 49727649--49727701 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
49727639 ATATGGAAAG
**
49727649 AAATAACAAAGATTTTATGCTAAT
1 AAATAACAAAGATGCTATGCTAAT
* *
49727673 AAATATCAAATATGCTATGCTAAT
1 AAATAACAAAGATGCTATGCTAAT
49727697 AAATA
1 AAATA
49727702 CTAATTCCCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.51, C:0.09, G:0.08, T:0.32
Consensus pattern (24 bp):
AAATAACAAAGATGCTATGCTAAT
Found at i:49733098 original size:21 final size:20
Alignment explanation
Indices: 49733059--49733098 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
49733049 CAAAACTTGT
*
49733059 ATAACTATCATTAAACATTC
1 ATAACTATCATCAAACATTC
*
49733079 ATAATCTATCATCAATCATT
1 ATAA-CTATCATCAAACATT
49733099 ACAATACATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.42, C:0.20, G:0.00, T:0.38
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:49742628 original size:30 final size:31
Alignment explanation
Indices: 49742578--49742642 Score: 96
Period size: 30 Copynumber: 2.1 Consensus size: 31
49742568 ACTTATTTTA
49742578 TTGTTAATTTTTTATTATTATTTTAAAGACAT
1 TTGTTAA-TTTTTATTATTATTTTAAAGACAT
* *
49742610 TTGTTAA-TTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTTATTATTATTTTAAAGACAT
49742640 TTG
1 TTG
49742643 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 24 0.77
32 7 0.23
ACGTcount: A:0.28, C:0.03, G:0.11, T:0.58
Consensus pattern (31 bp):
TTGTTAATTTTTATTATTATTTTAAAGACAT
Found at i:49742797 original size:12 final size:12
Alignment explanation
Indices: 49742767--49742799 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
49742757 TATATATTTT
49742767 AAAATT-ATATA
1 AAAATTAATATA
49742778 AAAA-TAATATA
1 AAAATTAATATA
49742789 AAAATTAATAT
1 AAAATTAATAT
49742800 GGGCCGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:49751580 original size:35 final size:35
Alignment explanation
Indices: 49751540--49751756 Score: 240
Period size: 35 Copynumber: 6.2 Consensus size: 35
49751530 AGTGCCACGA
* * * *
49751540 TTCACAACTCAGTATGGTTAATACCATACTTACAT
1 TTCATAACTCAGTATGGATAATACCATACCTACGT
* * **
49751575 TTCACAACTCGGTATGGGA-AATACCATACCTTTGT
1 TTCATAACTCAGTAT-GGATAATACCATACCTACGT
*
49751610 ATT-ATAGCTCAGTATGGATAATACCATACCTACGT
1 -TTCATAACTCAGTATGGATAATACCATACCTACGT
* *
49751645 ATCATAACTCATTATGGATAATACCATACCTACGT
1 TTCATAACTCAGTATGGATAATACCATACCTACGT
* * *
49751680 GTAATAACTCAGAATGGATAATACCATACCTACGT
1 TTCATAACTCAGTATGGATAATACCATACCTACGT
* * *
49751715 GTCATAACTCAGTATGGATAATACTATACCTACAT
1 TTCATAACTCAGTATGGATAATACCATACCTACGT
*
49751750 GTCATAA
1 TTCATAA
49751757 TTTTACCATG
Statistics
Matches: 156, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
34 4 0.03
35 148 0.95
36 4 0.03
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.31
Consensus pattern (35 bp):
TTCATAACTCAGTATGGATAATACCATACCTACGT
Found at i:49755318 original size:46 final size:47
Alignment explanation
Indices: 49755077--49755431 Score: 207
Period size: 46 Copynumber: 7.5 Consensus size: 47
49755067 ATACTGATAC
* * * *
49755077 CATGTCCCAGACATAGTCTTACACTAGC-T-CATCCATC-AAGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACAT-C-TCGAGGCCGATG
* * * ** * *
49755123 CTATGTCCTATACATGGTCTTACACTGAC-TATCGAAATCGAGGTCGACG
1 C-ATGTCCCAGACATGGTCTTACACTGGCTTA-C-ATCTCGAGGCCGATG
* * * * *
49755172 CCATGTCCCAGATATGGTCTTACACTAGCTCTTACATATCCATGCCGATG
1 -CATGTCCCAGACATGGTCTTACACT-G-GCTTACATCTCGAGGCCGATG
* * *
49755222 CCATGTCCCAGACATGGTCTTACACTGAC--AAATCTCGTA-GCTGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCG-AGGCCGATG
*
49755268 CATGTCCCAGACAT-GTCTCACACTGGCTTACATCTCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGATG
* * * * *
49755314 CATGTCCCAGACAT-GT-TATACACTAGCTCT-CGTCTCAATGCCAATG
1 CATGTCCCAGACATGGTCT-TACACTGGCT-TACATCTCGAGGCCGATG
* * * *
49755360 CCATGTCCCAAACATGGTCTTACACTGGCTCT-CATAAT-GTGGTCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCT-TACAT-CTCGAGGCCGATG
*
49755408 TATGTCCCAGACAT-GTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
49755432 AGCACACAAA
Statistics
Matches: 245, Mismatches: 45, Indels: 38
0.75 0.14 0.12
Matches are distributed among these distances:
44 11 0.04
45 16 0.07
46 71 0.29
47 50 0.20
48 23 0.09
49 32 0.13
50 38 0.16
51 2 0.01
52 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGATG
Found at i:49759936 original size:18 final size:18
Alignment explanation
Indices: 49759913--49759955 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
49759903 CAAGCTGTGA
49759913 AGAATCTGCAATATATGC
1 AGAATCTGCAATATATGC
*
49759931 AGAATCCGCAATATATGC
1 AGAATCTGCAATATATGC
49759949 AGAATCT
1 AGAATCT
49759956 TTGCCATCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.26
Consensus pattern (18 bp):
AGAATCTGCAATATATGC
Found at i:49760440 original size:51 final size:50
Alignment explanation
Indices: 49760401--49760500 Score: 134
Period size: 51 Copynumber: 2.0 Consensus size: 50
49760391 TATTAAATTT
*
49760401 TATATT-TA-TATTT-TTATTAAATTATATTTAATAATAATTATATTAAAA
1 TATATTATATTATTTATTATTAAATCAT-TTTAATAATAATTATATTAAAA
**
49760449 TATGATTATATTATTTATTATTAAATCATTTTAATAATAATCCTATTAAAA
1 TAT-ATTATATTATTTATTATTAAATCATTTTAATAATAATTATATTAAAA
49760500 T
1 T
49760501 TTAATAACAA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
48 3 0.07
49 3 0.07
50 2 0.04
51 26 0.58
52 11 0.24
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (50 bp):
TATATTATATTATTTATTATTAAATCATTTTAATAATAATTATATTAAAA
Found at i:49762811 original size:41 final size:42
Alignment explanation
Indices: 49762721--49762875 Score: 204
Period size: 42 Copynumber: 3.7 Consensus size: 42
49762711 CTGATTTATT
*
49762721 AACTGAGATTTGATTTGCATATTAAGCATGTCGATTATGATA
1 AACTGATATTTGATTTGCATATTAAGCATGTCGATTATGATA
49762763 AACTGATATTTGATTTGCATATTAAGCATGTC-ATTATGATA
1 AACTGATATTTGATTTGCATATTAAGCATGTCGATTATGATA
* * * * *
49762804 AGCTGATATTTGATTTGCATGTTAAGCATGTCGACTATGTTG
1 AACTGATATTTGATTTGCATATTAAGCATGTCGATTATGATA
* * * * *
49762846 ATCTTAGATTTGATTCGCATGTTAAGCATG
1 AACTGATATTTGATTTGCATATTAAGCATG
49762876 CCTATTGAAA
Statistics
Matches: 102, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
41 39 0.38
42 63 0.62
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (42 bp):
AACTGATATTTGATTTGCATATTAAGCATGTCGATTATGATA
Found at i:49762830 original size:83 final size:83
Alignment explanation
Indices: 49762723--49762875 Score: 216
Period size: 83 Copynumber: 1.8 Consensus size: 83
49762713 GATTTATTAA
* * *
49762723 CTGAGATTTGATTTGCATATTAAGCATGTCGATTATGATAAACTGATATTTGATTTGCATATTAA
1 CTGAGATTTGATTTGCATATTAAGCATGTCGACTATGATAAACTGAGATTTGATTCGCATATTAA
49762788 GCATGTCATTATGATAAG
66 GCATGTCATTATGATAAG
* * * * * * *
49762806 CTGATATTTGATTTGCATGTTAAGCATGTCGACTATGTTGATCTTAGATTTGATTCGCATGTTAA
1 CTGAGATTTGATTTGCATATTAAGCATGTCGACTATGATAAACTGAGATTTGATTCGCATATTAA
49762871 GCATG
66 GCATG
49762876 CCTATTGAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
83 60 1.00
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.41
Consensus pattern (83 bp):
CTGAGATTTGATTTGCATATTAAGCATGTCGACTATGATAAACTGAGATTTGATTCGCATATTAA
GCATGTCATTATGATAAG
Found at i:49762995 original size:23 final size:23
Alignment explanation
Indices: 49762969--49763012 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
49762959 CTACAAAAAT
49762969 TGAGTGGCTTGTCCACAATGTTA
1 TGAGTGGCTTGTCCACAATGTTA
*
49762992 TGAGTGGCTTGTTCACAATGT
1 TGAGTGGCTTGTCCACAATGT
49763013 GCAGCTTGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.20, C:0.16, G:0.27, T:0.36
Consensus pattern (23 bp):
TGAGTGGCTTGTCCACAATGTTA
Found at i:49763064 original size:62 final size:62
Alignment explanation
Indices: 49762967--49763110 Score: 191
Period size: 62 Copynumber: 2.3 Consensus size: 62
49762957 TACTACAAAA
* * * ** *
49762967 ATTGAGTGGCTTGTCCACAATGTTATGAGTGGCTTGTTCACAATGTGCAGCTTGACTGTAAC
1 ATTGAGTGGCTTGGCCACAATGCTATGAGTGGCTTGTCCACAACATGCAGCTTGACTGCAAC
* *
49763029 ATTGAGTGGCTTGGCCATAACT-CTATGAGTGGCTTGTCCACAACATGTAGCTTGACTGCAAC
1 ATTGAGTGGCTTGGCCACAA-TGCTATGAGTGGCTTGTCCACAACATGCAGCTTGACTGCAAC
*
49763091 ATTTAGTGGCTTGGCCACAA
1 ATTGAGTGGCTTGGCCACAA
49763111 CGTGGTGTGT
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
62 70 0.99
63 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (62 bp):
ATTGAGTGGCTTGGCCACAATGCTATGAGTGGCTTGTCCACAACATGCAGCTTGACTGCAAC
Found at i:49769918 original size:46 final size:47
Alignment explanation
Indices: 49769677--49770031 Score: 207
Period size: 46 Copynumber: 7.5 Consensus size: 47
49769667 ATACTGATAC
* * * *
49769677 CATGTCCCAGACATAGTCTTACACTAGC-T-CATCCATC-AAGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACAT-C-TCGAGGCCGATG
* * * ** * *
49769723 CTATGTCCTATACATGGTCTTACACTGAC-TATCGAAATCGAGGTCGACG
1 C-ATGTCCCAGACATGGTCTTACACTGGCTTA-C-ATCTCGAGGCCGATG
* * * * *
49769772 CCATGTCCCAGATATGGTCTTACACTAGCTCTTACATATCCATGCCGATG
1 -CATGTCCCAGACATGGTCTTACACT-G-GCTTACATCTCGAGGCCGATG
* * *
49769822 CCATGTCCCAGACATGGTCTTACACTGAC--AAATCTCGTA-GCTGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCG-AGGCCGATG
*
49769868 CATGTCCCAGACAT-GTCTCACACTGGCTTACATCTCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGATG
* * * * *
49769914 CATGTCCCAGACAT-GT-TATACACTAGCTCT-CGTCTCAATGCCAATG
1 CATGTCCCAGACATGGTCT-TACACTGGCT-TACATCTCGAGGCCGATG
* * * *
49769960 CCATGTCCCAAACATGGTCTTACACTGGCTCT-CATAAT-GTGGTCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCT-TACAT-CTCGAGGCCGATG
*
49770008 TATGTCCCAGACAT-GTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
49770032 AGCACACAAA
Statistics
Matches: 245, Mismatches: 45, Indels: 38
0.75 0.14 0.12
Matches are distributed among these distances:
44 11 0.04
45 16 0.07
46 71 0.29
47 50 0.20
48 23 0.09
49 32 0.13
50 38 0.16
51 2 0.01
52 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGATG
Found at i:49774536 original size:18 final size:18
Alignment explanation
Indices: 49774513--49774555 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
49774503 CAAGCTGTGA
49774513 AGAATCTGCAATATATGC
1 AGAATCTGCAATATATGC
*
49774531 AGAATCCGCAATATATGC
1 AGAATCTGCAATATATGC
49774549 AGAATCT
1 AGAATCT
49774556 TTGCCATCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.26
Consensus pattern (18 bp):
AGAATCTGCAATATATGC
Found at i:49775040 original size:51 final size:50
Alignment explanation
Indices: 49775001--49775100 Score: 134
Period size: 51 Copynumber: 2.0 Consensus size: 50
49774991 TATTAAATTT
*
49775001 TATATT-TA-TATTT-TTATTAAATTATATTTAATAATAATTATATTAAAA
1 TATATTATATTATTTATTATTAAATCAT-TTTAATAATAATTATATTAAAA
**
49775049 TATGATTATATTATTTATTATTAAATCATTTTAATAATAATCCTATTAAAA
1 TAT-ATTATATTATTTATTATTAAATCATTTTAATAATAATTATATTAAAA
49775100 T
1 T
49775101 TTAATAACAA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
48 3 0.07
49 3 0.07
50 2 0.04
51 26 0.58
52 11 0.24
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (50 bp):
TATATTATATTATTTATTATTAAATCATTTTAATAATAATTATATTAAAA
Found at i:49776497 original size:47 final size:47
Alignment explanation
Indices: 49776427--49776557 Score: 163
Period size: 47 Copynumber: 2.8 Consensus size: 47
49776417 GGTGCGAATA
* *
49776427 ATACCTTGATTTGGCTACGGGCCATGGTATAGGTATTCAAAGAGGAG
1 ATACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAAAGAGAAG
* ** * *** *
49776474 ATACATTGATTTGGCTATAGGCCATGATATAGGTACTCCGGGATAAG
1 ATACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAAAGAGAAG
*
49776521 TTACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
1 ATACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
49776558 TATCATTGTG
Statistics
Matches: 69, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (47 bp):
ATACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAAAGAGAAG
Found at i:49778079 original size:26 final size:26
Alignment explanation
Indices: 49778041--49778136 Score: 156
Period size: 26 Copynumber: 3.7 Consensus size: 26
49778031 NNNNNNNNNN
*
49778041 TTACCTAAACCATTATCATGGAACAT
1 TTACCTAACCCATTATCATGGAACAT
*
49778067 TTACCTAACCCATTATCATGGAATAT
1 TTACCTAACCCATTATCATGGAACAT
*
49778093 TTACCTAATCCATTATCATGGAACAT
1 TTACCTAACCCATTATCATGGAACAT
*
49778119 TTACCTAACTCATTATCA
1 TTACCTAACCCATTATCA
49778137 ATTTGTACCA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 64 1.00
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.34
Consensus pattern (26 bp):
TTACCTAACCCATTATCATGGAACAT
Found at i:49779128 original size:22 final size:22
Alignment explanation
Indices: 49779086--49779152 Score: 57
Period size: 23 Copynumber: 3.1 Consensus size: 22
49779076 TTTAGTAATA
*
49779086 AAGAAATCAAAAATAGTAAAAG
1 AAGAAATCAAAAATAGAAAAAG
* * *
49779108 AAGAAATTTAAAAATAAAAAAAT
1 AAGAAA-TCAAAAATAGAAAAAG
* *
49779131 AA-AAATCATAAAT-GAATAAG
1 AAGAAATCAAAAATAGAAAAAG
49779151 AA
1 AA
49779153 ATAGAAATTA
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
20 6 0.17
21 6 0.17
22 9 0.26
23 14 0.40
ACGTcount: A:0.70, C:0.03, G:0.09, T:0.18
Consensus pattern (22 bp):
AAGAAATCAAAAATAGAAAAAG
Found at i:49781680 original size:47 final size:47
Alignment explanation
Indices: 49781610--49781740 Score: 163
Period size: 47 Copynumber: 2.8 Consensus size: 47
49781600 GGTGCGAATA
* *
49781610 ATACCTTGATTTGGCTACGGGCCATGGTATAGGTATTCAAAGAGGAG
1 ATACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAAAGAGAAG
* ** * *** *
49781657 ATACATTGATTTGGCTATAGGCCATGATATAGGTACTCCGGGATAAG
1 ATACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAAAGAGAAG
*
49781704 TTACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
1 ATACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
49781741 TATCATTGTG
Statistics
Matches: 69, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (47 bp):
ATACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAAAGAGAAG
Found at i:49783666 original size:37 final size:37
Alignment explanation
Indices: 49783615--49783685 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
49783605 TTCTTTTGAA
49783615 CATTTTCGTACACATATCAAATAACCATATACTTATT
1 CATTTTCGTACACATATCAAATAACCATATACTTATT
*
49783652 CATTTTCGTTCACATATCAAATAACCATATACTT
1 CATTTTCGTACACATATCAAATAACCATATACTT
49783686 GTAATTTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.37, C:0.23, G:0.03, T:0.38
Consensus pattern (37 bp):
CATTTTCGTACACATATCAAATAACCATATACTTATT
Found at i:49792339 original size:13 final size:13
Alignment explanation
Indices: 49792291--49792339 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
49792281 TTAACATTAC
*
49792291 TTTTGAGAAGTG-
1 TTTTGAAAAGTGA
*
49792303 TTTTTAAAAGTGA
1 TTTTGAAAAGTGA
*
49792316 TTTGGAAAAGTGA
1 TTTTGAAAAGTGA
*
49792329 TTTTGAGAAGT
1 TTTTGAAAAGT
49792340 TTGGTTTAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 10 0.33
13 20 0.67
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.41
Consensus pattern (13 bp):
TTTTGAAAAGTGA
Found at i:49792756 original size:12 final size:13
Alignment explanation
Indices: 49792734--49792774 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
49792724 GGCCCGCCCG
49792734 TATTAATTTTTTA
1 TATTAATTTTTTA
49792747 TATT-ATTTTTTA
1 TATTAATTTTTTA
* *
49792759 TATAAATTTTTAA
1 TATTAATTTTTTA
49792772 TAT
1 TAT
49792775 ATATAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 11 0.44
13 14 0.56
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TATTAATTTTTTA
Found at i:49792767 original size:13 final size:13
Alignment explanation
Indices: 49792738--49792775 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
49792728 CGCCCGTATT
49792738 AATTTTTTATAT-
1 AATTTTTTATATA
*
49792750 TATTTTTTATATA
1 AATTTTTTATATA
*
49792763 AATTTTTAATATA
1 AATTTTTTATATA
49792776 TATAATATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
AATTTTTTATATA
Found at i:49792997 original size:22 final size:22
Alignment explanation
Indices: 49792955--49792998 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
49792945 TCCAAACAAT
*
49792955 AATAACAAAATAGTGAAAAAAC
1 AATAACAAAATAGTCAAAAAAC
*
49792977 AATAAGAAAATAG-CAACAAAAC
1 AATAACAAAATAGTCAA-AAAAC
49792999 TGTGTAGTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.68, C:0.11, G:0.09, T:0.11
Consensus pattern (22 bp):
AATAACAAAATAGTCAAAAAAC
Found at i:49807251 original size:47 final size:47
Alignment explanation
Indices: 49807188--49807313 Score: 234
Period size: 47 Copynumber: 2.7 Consensus size: 47
49807178 ATCCATAAAT
49807188 GAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
49807235 GAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* *
49807282 GAACTCGGACTCAACTCAACGAGTTCGAATGC
1 GAACTTGGACTCAACTCAACGAGTTCGGATGC
49807314 TCAACCATCC
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 77 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (47 bp):
GAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:49813203 original size:21 final size:21
Alignment explanation
Indices: 49813179--49813242 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
49813169 AACAAAAACC
49813179 CATAAGGGTTGAACGGAAGCT
1 CATAAGGGTTGAACGGAAGCT
* * * *
49813200 CATAAGAGCTGAATGGAA-CC
1 CATAAGGGTTGAACGGAAGCT
* *
49813220 CATAAGGGTTAAACAGAAGCT
1 CATAAGGGTTGAACGGAAGCT
49813241 CA
1 CA
49813243 ATAGAGCTAA
Statistics
Matches: 32, Mismatches: 10, Indels: 2
0.73 0.23 0.05
Matches are distributed among these distances:
20 14 0.44
21 18 0.56
ACGTcount: A:0.39, C:0.17, G:0.27, T:0.17
Consensus pattern (21 bp):
CATAAGGGTTGAACGGAAGCT
Found at i:49816537 original size:19 final size:21
Alignment explanation
Indices: 49816486--49816543 Score: 93
Period size: 21 Copynumber: 2.9 Consensus size: 21
49816476 GGTGTATCAT
*
49816486 CTCTTATGAGCTTCTGTTCAG
1 CTCTTACGAGCTTCTGTTCAG
49816507 CTCTTACGAGCTTCTGTTCAG
1 CTCTTACGAGCTTCTGTTCAG
49816528 CT-TT-CGAGCTTCTGTT
1 CTCTTACGAGCTTCTGTT
49816544 GGCATATTCA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
19 12 0.33
20 2 0.06
21 22 0.61
ACGTcount: A:0.12, C:0.26, G:0.19, T:0.43
Consensus pattern (21 bp):
CTCTTACGAGCTTCTGTTCAG
Found at i:49822739 original size:122 final size:122
Alignment explanation
Indices: 49822522--49822767 Score: 483
Period size: 122 Copynumber: 2.0 Consensus size: 122
49822512 GAACAGACAA
49822522 ACGACTATTATGTGCTTCTTGAAAAATCTTCTGAATAAGTTCATTGTCTTTAGGTACACAAACTC
1 ACGACTATTATGTGCTTCTTGAAAAATCTTCTGAATAAGTTCATTGTCTTTAGGTACACAAACTC
*
49822587 TATCTCTAAACATTAAACATCCATCAGGACTAATTCGGAAATCTGACTCAACACCAG
66 TATCTCTAAACATTAAACATCCATCAGGACTAATTCGAAAATCTGACTCAACACCAG
49822644 ACGACTATTATGTGCTTCTTGAAAAATCTTCTGAATAAGTTCATTGTCTTTAGGTACACAAACTC
1 ACGACTATTATGTGCTTCTTGAAAAATCTTCTGAATAAGTTCATTGTCTTTAGGTACACAAACTC
49822709 TATCTCTAAACATTAAACATCCATCAGGACTAATTCGAAAATCTGACTCAACACCAG
66 TATCTCTAAACATTAAACATCCATCAGGACTAATTCGAAAATCTGACTCAACACCAG
49822766 AC
1 AC
49822768 TCACATTGAG
Statistics
Matches: 123, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
122 123 1.00
ACGTcount: A:0.35, C:0.22, G:0.12, T:0.31
Consensus pattern (122 bp):
ACGACTATTATGTGCTTCTTGAAAAATCTTCTGAATAAGTTCATTGTCTTTAGGTACACAAACTC
TATCTCTAAACATTAAACATCCATCAGGACTAATTCGAAAATCTGACTCAACACCAG
Found at i:49828868 original size:43 final size:43
Alignment explanation
Indices: 49828794--49828924 Score: 138
Period size: 50 Copynumber: 2.9 Consensus size: 43
49828784 TTTGAACTCA
* * *
49828794 TTCACCGGCATT-TCGCCTGCCAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCAT
*
49828836 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCT-------GAAGCCCGATATCAT
* *
49828886 CTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATA
49828925 ATATTATTCA
Statistics
Matches: 75, Mismatches: 6, Indels: 15
0.78 0.06 0.16
Matches are distributed among these distances:
42 12 0.16
43 23 0.31
50 40 0.53
ACGTcount: A:0.22, C:0.33, G:0.22, T:0.23
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCAT
Found at i:49828891 original size:50 final size:50
Alignment explanation
Indices: 49828821--49828922 Score: 177
Period size: 50 Copynumber: 2.0 Consensus size: 50
49828811 TGCCAGGCTT
* *
49828821 GAAGCCCGATATCATTTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCC
1 GAAGCCCGATATCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCC
*
49828871 GAAGCCCGATATTATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCC
1 GAAGCCCGATATCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCC
49828921 GA
1 GA
49828923 TAATATTATT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.25, C:0.32, G:0.23, T:0.21
Consensus pattern (50 bp):
GAAGCCCGATATCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCC
Found at i:49828964 original size:43 final size:46
Alignment explanation
Indices: 49828867--49828965 Score: 111
Period size: 43 Copynumber: 2.3 Consensus size: 46
49828857 TAGGCCTGAA
* *
49828867 GCCCGAAGCCCG---ATATTATCTCACCGGCATTATAGCCTGCTAG
1 GCCCGAAGCCCGATAATATTATCTCACCAGCATTAAAGCCTGCTAG
* *
49828910 GCCCGAAGCCCGATAATATTAT-TCACCAGC-TTAAAGCTTGTTAG
1 GCCCGAAGCCCGATAATATTATCTCACCAGCATTAAAGCCTGCTAG
*
49828954 G-CCGAGGCCCGA
1 GCCCGAAGCCCGA
49828966 ATATCACATT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
43 22 0.46
44 12 0.25
45 7 0.15
46 7 0.15
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.22
Consensus pattern (46 bp):
GCCCGAAGCCCGATAATATTATCTCACCAGCATTAAAGCCTGCTAG
Found at i:49828964 original size:93 final size:92
Alignment explanation
Indices: 49828795--49828966 Score: 206
Period size: 93 Copynumber: 1.9 Consensus size: 92
49828785 TTGAACTCAT
* ** * *
49828795 TCACCGGCATTTCGCCTGCCAGGCTTGAAGCCCGATATCATTTCACCGGCATTATAGCCTGCTAG
1 TCACCGGCATTTAGCCTGCCAGGCCCGAAGCCCGATATCATTTCACCAGCATTAAAGCCTGCTAG
49828860 GCCTGAAGCCCGAAGCCCGATATTATC
66 GCCTGAAGCCCGAAGCCCGATATTATC
* *
49828887 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATAAT-ATTATTCACCAGC-TTAAAGCTTG
1 TCACCGGCATT-TAGCCTGCCAGGCCCGAAGCCCGAT-ATCA-T-TTCACCAGCATTAAAGCCTG
* *
49828950 TTAGGCC-GAGGCCCGAA
62 CTAGGCCTGAAGCCCGAA
49828967 TATCACATTT
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
92 11 0.16
93 31 0.46
94 17 0.25
95 8 0.12
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (92 bp):
TCACCGGCATTTAGCCTGCCAGGCCCGAAGCCCGATATCATTTCACCAGCATTAAAGCCTGCTAG
GCCTGAAGCCCGAAGCCCGATATTATC
Found at i:49837109 original size:8 final size:8
Alignment explanation
Indices: 49837096--49837127 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
49837086 CTAGATCGGC
49837096 AAAAGCCG
1 AAAAGCCG
49837104 AAAAGCCG
1 AAAAGCCG
*
49837112 AAATGCCG
1 AAAAGCCG
49837120 AAAAGCCG
1 AAAAGCCG
49837128 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:49837417 original size:28 final size:28
Alignment explanation
Indices: 49837377--49837468 Score: 150
Period size: 28 Copynumber: 3.3 Consensus size: 28
49837367 TGTACTAGAG
49837377 TACCCCTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATTACCATTA
49837405 TACCCCTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATTACCATTA
* *
49837433 TACCTCTATGTATGCAAAATGACC-TCTA
1 TACCCCTATGTATGCAAAATTACCAT-TA
49837461 TACCCCTA
1 TACCCCTA
49837469 GAGTTAATTT
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 1 0.02
28 59 0.98
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.32
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATTACCATTA
Found at i:49837615 original size:28 final size:27
Alignment explanation
Indices: 49837574--49837663 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 27
49837564 AGGAAGCGTC
49837574 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
49837602 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
* *
49837629 CTGATGGCACTGCCACAAAATATCTATAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
49837658 CTGGTG
1 CTGGTG
49837664 ACTCTGTCAC
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 22 0.44
28 22 0.44
29 6 0.12
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:49844755 original size:8 final size:8
Alignment explanation
Indices: 49844742--49844773 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
49844732 TTAGATCGGC
49844742 AAAAGCCG
1 AAAAGCCG
49844750 AAAAGCCG
1 AAAAGCCG
*
49844758 AAATGCCG
1 AAAAGCCG
49844766 AAAAGCCG
1 AAAAGCCG
49844774 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:49845063 original size:28 final size:28
Alignment explanation
Indices: 49845023--49845114 Score: 141
Period size: 28 Copynumber: 3.3 Consensus size: 28
49845013 TGTACTAGAG
49845023 TACCCCTATGTATGAAAAATTACCATTA
1 TACCCCTATGTATGAAAAATTACCATTA
*
49845051 TACCCCTATGTATGTAAAATTACCATTA
1 TACCCCTATGTATGAAAAATTACCATTA
* *
49845079 TACCCCTATGTATGCAAAATGACC-TCTA
1 TACCCCTATGTATGAAAAATTACCAT-TA
49845107 TACCCCTA
1 TACCCCTA
49845115 GGGTTAATTT
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 1 0.02
28 59 0.98
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.32
Consensus pattern (28 bp):
TACCCCTATGTATGAAAAATTACCATTA
Found at i:49845261 original size:28 final size:27
Alignment explanation
Indices: 49845220--49845301 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
49845210 AGGAAGCGTC
49845220 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
49845248 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
49845275 CTGGTGGCACTGCCACAAAATATCTGT
1 CTGGTGGCACTGCCAC-AAATATCTGT
49845302 ATCTAGTGAC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
27 23 0.50
28 23 0.50
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:49854211 original size:16 final size:16
Alignment explanation
Indices: 49854187--49854220 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
49854177 CTTTTACCCC
* *
49854187 GTTTTCGCACGGCCGT
1 GTTTCCGCACGACCGT
49854203 GTTTCCGCACGACCGT
1 GTTTCCGCACGACCGT
49854219 GT
1 GT
49854221 GGAGTTGGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.09, C:0.32, G:0.29, T:0.29
Consensus pattern (16 bp):
GTTTCCGCACGACCGT
Found at i:49862883 original size:16 final size:16
Alignment explanation
Indices: 49862862--49862894 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
49862852 TTTTGGTATA
49862862 ATGGCATGTATAGGCT
1 ATGGCATGTATAGGCT
49862878 ATGGCATGTATAGGCT
1 ATGGCATGTATAGGCT
49862894 A
1 A
49862895 ACTCGGCCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.30
Consensus pattern (16 bp):
ATGGCATGTATAGGCT
Found at i:49865803 original size:49 final size:49
Alignment explanation
Indices: 49865744--49865871 Score: 179
Period size: 49 Copynumber: 2.6 Consensus size: 49
49865734 ATATACAAGC
* *
49865744 TAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAAATGAGAGT
1 TAGTGTAAGACCTGTTTGGGACATGGCATCGAC-CTCGATAAATGAAAGT
* * *
49865793 CT-GTGTAAGACCTGTTTGGGAGATGGCATCGGCCTCGATATATGAAAGT
1 -TAGTGTAAGACCTGTTTGGGACATGGCATCGACCTCGATAAATGAAAGT
49865842 TAGTGTAAGACCTGTTTGGGACATGGCATC
1 TAGTGTAAGACCTGTTTGGGACATGGCATC
49865872 AACTTTAATG
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
48 2 0.03
49 67 0.96
50 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (49 bp):
TAGTGTAAGACCTGTTTGGGACATGGCATCGACCTCGATAAATGAAAGT
Found at i:49874388 original size:17 final size:16
Alignment explanation
Indices: 49874366--49874399 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
49874356 CAATATTTCA
*
49874366 TACTCTTTTTTCTATTT
1 TACTCTATTTT-TATTT
49874383 TACTCTATTTTTATTT
1 TACTCTATTTTTATTT
49874399 T
1 T
49874400 TAATTTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.71
Consensus pattern (16 bp):
TACTCTATTTTTATTT
Found at i:49877572 original size:35 final size:36
Alignment explanation
Indices: 49877507--49877582 Score: 86
Period size: 35 Copynumber: 2.1 Consensus size: 36
49877497 TTTTTTAAAT
* *
49877507 ATTATTATTTCTTCAAATATATAATTTATAT-ATGA
1 ATTATTATTTCTTAAAATATATAATATATATAATGA
*
49877542 GTTATTATTT-TTAAAATATA-AACCTATATATAATGA
1 ATTATTATTTCTTAAAATATATAA--TATATATAATGA
49877578 ATTAT
1 ATTAT
49877583 CTTTTCATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
33 2 0.06
34 9 0.26
35 15 0.44
36 8 0.24
ACGTcount: A:0.42, C:0.05, G:0.04, T:0.49
Consensus pattern (36 bp):
ATTATTATTTCTTAAAATATATAATATATATAATGA
Found at i:49878413 original size:17 final size:18
Alignment explanation
Indices: 49878381--49878414 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
49878371 GCTTATATTA
*
49878381 CTTTTCTAATTTAATTTC
1 CTTTTCTAACTTAATTTC
49878399 CTTTT-TAACTTAATTT
1 CTTTTCTAACTTAATTT
49878415 TGACAAGTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.62
Consensus pattern (18 bp):
CTTTTCTAACTTAATTTC
Found at i:49888386 original size:60 final size:62
Alignment explanation
Indices: 49888285--49888429 Score: 168
Period size: 60 Copynumber: 2.4 Consensus size: 62
49888275 TATGCCTTGG
* * * *
49888285 CCATGTGGATTTTATGCAATGAACAGTAAGTTACACAGCCTAGGCATACGCCTGTGT-TCTGA
1 CCATGTGG-TTTTATACAATAAACAGTAAGTTACACAGCCTAGGCACACGCCTGTGTCCCTGA
* * * * *
49888347 CCATGTGGTTTTATAC-ATAAACTGTGAGTTAGACGGCCTAGGCACACGCCTGTGTCCCTGG
1 CCATGTGGTTTTATACAATAAACAGTAAGTTACACAGCCTAGGCACACGCCTGTGTCCCTGA
**
49888408 CTGTGTGGTTTTATACAATAAA
1 CCATGTGGTTTTATACAATAAA
49888430 TAGTGAATTA
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
60 33 0.47
61 24 0.34
62 13 0.19
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (62 bp):
CCATGTGGTTTTATACAATAAACAGTAAGTTACACAGCCTAGGCACACGCCTGTGTCCCTGA
Found at i:49904819 original size:12 final size:12
Alignment explanation
Indices: 49904802--49904826 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
49904792 GGTGTTCATT
49904802 CGGTTAACCGAC
1 CGGTTAACCGAC
49904814 CGGTTAACCGAC
1 CGGTTAACCGAC
49904826 C
1 C
49904827 CGAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:49905005 original size:9 final size:9
Alignment explanation
Indices: 49904987--49905051 Score: 94
Period size: 9 Copynumber: 7.2 Consensus size: 9
49904977 TTTGGTTAAA
*
49904987 AATTACCCG
1 AATTAACCG
*
49904996 AATTATCCG
1 AATTAACCG
*
49905005 AATTACCCG
1 AATTAACCG
*
49905014 AATTACCCG
1 AATTAACCG
49905023 AATTAACCG
1 AATTAACCG
49905032 AATTAACCG
1 AATTAACCG
49905041 AATTAACCG
1 AATTAACCG
49905050 AA
1 AA
49905052 AAATACCCGA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 53 1.00
ACGTcount: A:0.40, C:0.26, G:0.11, T:0.23
Consensus pattern (9 bp):
AATTAACCG
Found at i:49906622 original size:128 final size:128
Alignment explanation
Indices: 49906349--49906680 Score: 388
Period size: 128 Copynumber: 2.6 Consensus size: 128
49906339 CGAAAAAACC
* * * *
49906349 GAAACCCAGCACAGTAGGGTACGATTCCTCGAATTTCTAAACATTGAGCATTGCCTTGTTTTA-G
1 GAAACCCAGCACAGTAGGGCACGATTCCTCGAATTTCCAAACATCGAACATTGCCTTGTTTTAGG
** * * *
49906413 AATTTAGAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGGGAAATT
66 AATTTTCAAAACAGGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACAGAAAATT
* * *
49906476 GCAACCCAGCACAATAGGGCACGATTCCCCGAATTTCCAAACATCGAACATTGCCTTCGTTTTAA
1 GAAACCCAGCACAGTAGGGCACGATTCCTCGAATTTCCAAACATCGAACATTGCCTT-GTTTT-A
* * *
49906541 GGAATTTTCAAAGTAC-GGA-TGAAATT-TCAAGGAATATTTGATTA-TTTGGACAAACAGAAAA
64 GGAATTTTCAAA--ACAGGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACAGAAAA
49906602 TT
127 TT
* * *
49906604 GAAACCCAGCACAGTAGGGCACGATTCCTCGAGTTCCCAAACATC-AATCATTACCTTTGTTTTA
1 GAAACCCAGCACAGTAGGGCACGATTCCTCGAATTTCCAAACATCGAA-CATTGCC-TTGTTTTA
*
49906668 GTAAATTTTCAAA
64 G-GAATTTTCAAA
49906681 TAAAAAATTG
Statistics
Matches: 175, Mismatches: 22, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
127 54 0.31
128 82 0.47
129 19 0.11
130 16 0.09
131 2 0.01
132 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (128 bp):
GAAACCCAGCACAGTAGGGCACGATTCCTCGAATTTCCAAACATCGAACATTGCCTTGTTTTAGG
AATTTTCAAAACAGGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACAGAAAATT
Found at i:49906987 original size:19 final size:19
Alignment explanation
Indices: 49906963--49907001 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
49906953 ATATAATGAT
49906963 ACAAAA-AACGAATATATAA
1 ACAAAATAA-GAATATATAA
*
49906982 ACAAAATAATAATATATAA
1 ACAAAATAAGAATATATAA
49907001 A
1 A
49907002 ATAACATGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.69, C:0.08, G:0.03, T:0.21
Consensus pattern (19 bp):
ACAAAATAAGAATATATAA
Found at i:49910085 original size:25 final size:24
Alignment explanation
Indices: 49910040--49910086 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
49910030 GAGGAAAGAA
**
49910040 TAGAAAAACAAAGAACTAAAATTT
1 TAGAAAAACAAAGAAAAAAAATTT
*
49910064 TAGAATAAAGAAAGAAAAAAAAT
1 TAGAA-AAACAAAGAAAAAAAAT
49910087 AGAAGAACGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 5 0.26
25 14 0.74
ACGTcount: A:0.68, C:0.04, G:0.11, T:0.17
Consensus pattern (24 bp):
TAGAAAAACAAAGAAAAAAAATTT
Found at i:49919993 original size:21 final size:21
Alignment explanation
Indices: 49919970--49920009 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
49919960 TTAAATATTT
*
49919970 TTTTAT-TTTTTTATTTTCCC
1 TTTTATCTCTTTTATTTTCCC
49919990 TTTTATCTCTTTTATTTTCC
1 TTTTATCTCTTTTATTTTCC
49920010 TTATTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTATCTCTTTTATTTTCCC
Found at i:49931668 original size:26 final size:26
Alignment explanation
Indices: 49931639--49931690 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
49931629 TAGGCCGGTG
49931639 GAGTAGGCCATGTTAAACAGAGTTCA
1 GAGTAGGCCATGTTAAACAGAGTTCA
49931665 GAGTAGGCCATGTTAAACAGAGTTCA
1 GAGTAGGCCATGTTAAACAGAGTTCA
49931691 ATCCATCCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (26 bp):
GAGTAGGCCATGTTAAACAGAGTTCA
Found at i:49942868 original size:6 final size:6
Alignment explanation
Indices: 49942859--49942890 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
49942849 CCGTGGTTAT
*
49942859 GGTAGA GGTAGA GGTAGA GGTAGA GGCAGA GG
1 GGTAGA GGTAGA GGTAGA GGTAGA GGTAGA GG
49942891 AAGGAATGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.31, C:0.03, G:0.53, T:0.12
Consensus pattern (6 bp):
GGTAGA
Found at i:49945879 original size:29 final size:29
Alignment explanation
Indices: 49945837--49945896 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
49945827 CAAGAGTAGA
49945837 AATGTGCAACAGAGATATTTTGTGACAAC
1 AATGTGCAACAGAGATATTTTGTGACAAC
49945866 AATGTGCAACAGAGATATTTTGTGACAAC
1 AATGTGCAACAGAGATATTTTGTGACAAC
49945895 AA
1 AA
49945897 ATCCACTATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (29 bp):
AATGTGCAACAGAGATATTTTGTGACAAC
Found at i:49948226 original size:22 final size:22
Alignment explanation
Indices: 49948189--49948245 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
49948179 GCAGTATACC
*
49948189 AAATAT-TTTTCATATATATATAT
1 AAATATATTTT-ATATA-AAATAT
*
49948212 ATATTATATTTTATATAAAATAT
1 A-AATATATTTTATATAAAATAT
49948235 AAATATATTTT
1 AAATATATTTT
49948246 TATTTAGCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 9 0.31
23 7 0.24
24 9 0.31
25 4 0.14
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (22 bp):
AAATATATTTTATATAAAATAT
Found at i:49948307 original size:29 final size:26
Alignment explanation
Indices: 49948275--49948338 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 26
49948265 AAATTAATAT
49948275 TTATAAAATATTTTTA-ATTAATTAGTAA
1 TTATAAAAT-TTTTTAGATTAA-T-GTAA
*
49948303 GTTATATAATTTTTTATGATTAATGTAA
1 -TTATAAAATTTTTTA-GATTAATGTAA
49948331 TTATAAAA
1 TTATAAAA
49948339 AAGACACACT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
27 7 0.23
28 10 0.32
29 9 0.29
30 5 0.16
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (26 bp):
TTATAAAATTTTTTAGATTAATGTAA
Found at i:49952640 original size:10 final size:10
Alignment explanation
Indices: 49952627--49952657 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
49952617 AGTTTAACTT
*
49952627 TTAATTAATC
1 TTAATTAAAC
49952637 TTAATTAAAC
1 TTAATTAAAC
49952647 TTAATTAAAC
1 TTAATTAAAC
49952657 T
1 T
49952658 AACCTTAAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (10 bp):
TTAATTAAAC
Found at i:49957929 original size:29 final size:28
Alignment explanation
Indices: 49957893--49957970 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
49957883 TCATGAGATT
49957893 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
49957923 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
49957950 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
49957971 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:49958188 original size:174 final size:174
Alignment explanation
Indices: 49957923--49958250 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
49957913 AAATTGTACA
*
49957923 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
49957988 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTATCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
49958053 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
49958097 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
49958162 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
49958227 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
49958251 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:49963729 original size:51 final size:51
Alignment explanation
Indices: 49963655--49963757 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
49963645 CCAAGCTGCA
49963655 TTTTAGCACCGCTTTTCACCCCCAAACCGATGGTCAATCCGAGCGGATAAT
1 TTTTAGCACCGCTTTTCACCCCCAAACCGATGGTCAATCCGAGCGGATAAT
*
49963706 TTTTAGCACCGCTTTTCATCCCCAAACCGATGGTCAATCCGAGCGGATAAT
1 TTTTAGCACCGCTTTTCACCCCCAAACCGATGGTCAATCCGAGCGGATAAT
49963757 T
1 T
49963758 CAGATACTCG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.27
Consensus pattern (51 bp):
TTTTAGCACCGCTTTTCACCCCCAAACCGATGGTCAATCCGAGCGGATAAT
Found at i:49965087 original size:147 final size:149
Alignment explanation
Indices: 49964845--49965138 Score: 529
Period size: 147 Copynumber: 2.0 Consensus size: 149
49964835 TGTTGGGAAC
* *
49964845 ATGTTGGCCTAGTGAGGTATGTAGGAAAAAAATAAAATAAGGAGTATGGGTAATAAAGAAAGGAA
1 ATGTTGGCCTAGTGAGGTATGTAGGAAAAAAATAAAATAAGGAATATGGATAATAAAGAAAGGAA
49964910 AAACAAAAAAATGAGTGGTTGTTTCCCCCCCATTGCCGTGAGCTAAAGAAAGGAAAAG-AAAAA-
66 AAACAAAAAAATGAGTGGTTGTTTCCCCCCCATTGCCGTGAGCTAAAGAAAGGAAAAGAAAAAAT
49964973 CTTGTTCATCCTTTTTTAT
131 CTTGTTCATCCTTTTTTAT
49964992 ATGTTGGCCTAGTGAGGTATGTAGGAAAAAAATAAAATAAGGAATATGGATAATAAAGAAAGGAA
1 ATGTTGGCCTAGTGAGGTATGTAGGAAAAAAATAAAATAAGGAATATGGATAATAAAGAAAGGAA
*
49965057 AAACAAAAAAATGAGTGGTTGTTTCCCCCCCATTGCCGTGAGGTAAAGAAAGGAAAAGAAAAAAA
66 AAACAAAAAAATGAGTGGTTGTTTCCCCCCCATTGCCGTGAGCTAAAGAAAGGAAAAG-AAAAAA
*
49965122 TTTTGTTCATCCTTTTT
130 TCTTGTTCATCCTTTTT
49965139 CATCCTCTTT
Statistics
Matches: 140, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
147 120 0.86
149 5 0.04
150 15 0.11
ACGTcount: A:0.42, C:0.11, G:0.22, T:0.25
Consensus pattern (149 bp):
ATGTTGGCCTAGTGAGGTATGTAGGAAAAAAATAAAATAAGGAATATGGATAATAAAGAAAGGAA
AAACAAAAAAATGAGTGGTTGTTTCCCCCCCATTGCCGTGAGCTAAAGAAAGGAAAAGAAAAAAT
CTTGTTCATCCTTTTTTAT
Found at i:49966280 original size:29 final size:28
Alignment explanation
Indices: 49966244--49966321 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
49966234 TCACGAGATT
49966244 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
49966274 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
49966301 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
49966322 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:49966541 original size:145 final size:145
Alignment explanation
Indices: 49966299--49966572 Score: 521
Period size: 145 Copynumber: 1.9 Consensus size: 145
49966289 GTTTAAAGTA
*
49966299 CATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
* *
49966364 ATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTG
66 ATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
49966429 TGCGAACTTGAAATG
131 TGCGAACTTGAAATG
49966444 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
49966509 ATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
66 ATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
49966573 ACCTTGAGTT
Statistics
Matches: 126, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
145 126 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (145 bp):
CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
ATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
TGCGAACTTGAAATG
Found at i:49970527 original size:46 final size:46
Alignment explanation
Indices: 49970448--49970651 Score: 148
Period size: 46 Copynumber: 4.4 Consensus size: 46
49970438 CAATGCCATA
*
49970448 TCCCAGATATGGTCTTACATTGACTATCATCTCGTA-GCTGATGCATG
1 TCCCAGACAT-GTCTTACATTGACTATCATCTCG-AGGCTGATGCATG
* *
49970495 TCCCAGACATGTCTTACATTGGCT-TACGTCTCGAGGCTGATGCATG
1 TCCCAGACATGTCTTACATTGACTAT-CATCTCGAGGCTGATGCATG
* * * ** *
49970541 TCCCGGACATGTCTTACACTAAC-ACTTGTCTCGATGC-GATGCCATG
1 TCCCAGACATGTCTTACATTGACTA-TCATCTCGAGGCTGATG-CATG
* * * * * * *
49970587 TCCCAAACATGGTCTTACATAGGCTTTCATAAT-GTGGCCGATGCATG
1 TCCCAGACAT-GTCTTACATTGACTATCAT-CTCGAGGCTGATGCATG
* *
49970634 TCCCAGGCACGTCTTACA
1 TCCCAGACATGTCTTACA
49970652 CTAGCCCATA
Statistics
Matches: 124, Mismatches: 24, Indels: 19
0.74 0.14 0.11
Matches are distributed among these distances:
45 6 0.05
46 78 0.63
47 35 0.28
48 5 0.04
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.30
Consensus pattern (46 bp):
TCCCAGACATGTCTTACATTGACTATCATCTCGAGGCTGATGCATG
Found at i:49990339 original size:34 final size:34
Alignment explanation
Indices: 49990268--49990346 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 34
49990258 TATGTTAATA
* ** *
49990268 GGCTTAGGCCCAGACTACTACTGTTACTGGAACG
1 GGCTAAGGCCCAGACTACTACTGTTACTAAAAAG
* * * *
49990302 GGCTCAGGCCCAGATTGCTGCTGTTACTAAAAAG
1 GGCTAAGGCCCAGACTACTACTGTTACTAAAAAG
49990336 GGCTAAGGCCC
1 GGCTAAGGCCC
49990347 TAGCTGTTAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.22
Consensus pattern (34 bp):
GGCTAAGGCCCAGACTACTACTGTTACTAAAAAG
Found at i:50000399 original size:47 final size:46
Alignment explanation
Indices: 50000325--50000642 Score: 182
Period size: 47 Copynumber: 6.7 Consensus size: 46
50000315 TTAAGTTGCC
* *
50000325 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTCATCGAGGCT
1 GATG-CATGTCCCAG--ATGGTCTTACACTGGCTATCATCATCAAGGCT
* * * * *
50000374 GATGTCATGTCCCAGATGGTCTTACACTAGCTCTCGTGTAT-AAGTGTT
1 GATG-CATGTCCCAGATGGTCTTACACTGGCTATCAT-CATCAAG-GCT
* * **
50000422 GATGCATGTCACACACAT-GTCTTACACTGGCTACCATCATTGAGG-T
1 GATGCATGTC-C-CAGATGGTCTTACACTGGCTATCATCATCAAGGCT
** * * ** *
50000468 CGATGCATGTCCCAGACACGTCTTAAACTGGC-ACTCAT-ATCTACACC
1 -GATGCATGTCCCAGA-TGGTCTTACACTGGCTA-TCATCATCAAGGCT
* *
50000515 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAAT-ATGGCT
1 GATG-CATGTCCCAG--ATGGTCTTACACTGGCTATCATCATCAAGGCT
** * ** * *
50000563 GATGCATGTCCCAGACACGTCTTACACTAGCCCTCGTC-TCAATGCT
1 GATGCATGTCCCAGA-TGGTCTTACACTGGCTATCATCATCAAGGCT
50000609 GATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 GATG-CATGTCCCAG--ATGGTCTTACACTGGCT
50000643 CTCACATAAC
Statistics
Matches: 205, Mismatches: 44, Indels: 41
0.71 0.15 0.14
Matches are distributed among these distances:
45 5 0.02
46 33 0.16
47 85 0.41
48 59 0.29
49 23 0.11
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGATGGTCTTACACTGGCTATCATCATCAAGGCT
Found at i:50000534 original size:94 final size:94
Alignment explanation
Indices: 50000323--50000642 Score: 330
Period size: 94 Copynumber: 3.4 Consensus size: 94
50000313 GGTTAAGTTG
* *
50000323 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTCATCGAGG-CTGATGTCATGTCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATTGAGGTC-GATG-CATGTCCC
** * * *
50000387 AGA-TGGTCTTACACTAGCTCTCGTGTATAA
64 AGACACGTCTTACACTAGCACTCGTATCTAA
** * * *
50000417 GTGTTGATG-CATGTCACACACAT-GTCTTACACTGGCTACCATCATTGAGGTCGATGCATGTCC
1 ---CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATTGAGGTCGATGCATGTCC
* * *
50000480 CAGACACGTCTTAAACTGGCACTCATATCTACA
63 CAGACACGTCTTACACTAGCACTCGTATCTA-A
* *
50000513 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATATG-GCT-GATGCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCAT-TGAGGTCGATGCATGTCCCA
* *
50000576 GACACGTCTTACACTAGCCCTCGTCTC-AA
65 GACACGTCTTACACTAGCACTCGTATCTAA
*
50000605 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 --CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
50000643 CTCACATAAC
Statistics
Matches: 187, Mismatches: 28, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
92 1 0.01
93 5 0.03
94 93 0.50
95 68 0.36
96 16 0.09
97 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (94 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATTGAGGTCGATGCATGTCCCAG
ACACGTCTTACACTAGCACTCGTATCTAA
Found at i:50005076 original size:39 final size:40
Alignment explanation
Indices: 50004919--50005143 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
50004909 GCTCCTCGTT
* *
50004919 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
50004959 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
50004999 CAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
50005039 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
50005078 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
50005119 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
50005144 CATCATTCAA
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 114 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:50005131 original size:119 final size:120
Alignment explanation
Indices: 50004921--50005143 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
50004911 TCCTCGTTCA
*
50004921 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
*
50004986 TTAGTAACTCACACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTCACACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
50005041 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * * * *
50005103 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTCA-CACAAATGCCATCGGGACTTAACCCGGA
50005144 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 67 0.75
120 18 0.20
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTCACACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:50012229 original size:59 final size:59
Alignment explanation
Indices: 50012159--50012277 Score: 211
Period size: 59 Copynumber: 2.0 Consensus size: 59
50012149 CAGCCGATCT
*
50012159 TGATACCCGAGTGGAAATGGGATCAAGTCACAATGGACTTTGTGTCCGGACTACCATTG
1 TGATACCCGAGTGGAAATGGGACCAAGTCACAATGGACTTTGTGTCCGGACTACCATTG
* *
50012218 TGATACCCGAGTGGAAATGGGACCGAGTCACAATGGACTTTGTGTCCGGACTGCCATTG
1 TGATACCCGAGTGGAAATGGGACCAAGTCACAATGGACTTTGTGTCCGGACTACCATTG
50012277 T
1 T
50012278 CCGCAAGTAA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (59 bp):
TGATACCCGAGTGGAAATGGGACCAAGTCACAATGGACTTTGTGTCCGGACTACCATTG
Found at i:50014930 original size:29 final size:28
Alignment explanation
Indices: 50014894--50014971 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
50014884 TCATGAGATT
50014894 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
50014924 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
50014951 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
50014972 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:50015189 original size:174 final size:174
Alignment explanation
Indices: 50014924--50015251 Score: 629
Period size: 174 Copynumber: 1.9 Consensus size: 174
50014914 AAATTGTACA
50014924 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
*
50014989 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
50015054 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
50015098 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
50015163 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
50015228 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
50015252 ACCTTGAGTT
Statistics
Matches: 151, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 151 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:50018737 original size:46 final size:46
Alignment explanation
Indices: 50018660--50018863 Score: 157
Period size: 46 Copynumber: 4.4 Consensus size: 46
50018650 CAATGCCATA
*
50018660 TCCCAGATATGGTCTTACATTGACTATCATCTCGTA-GCTGATGCATG
1 TCCCAGACAT-GTCTTACATTGACTATCATCTCG-AGGCTGATGCATG
*
50018707 TCCCAGACATGTCTTACATTGGCT-TACATCTCGAGGCTGATGCATG
1 TCCCAGACATGTCTTACATTGACTAT-CATCTCGAGGCTGATGCATG
* * * ** *
50018753 TCCCGGACATGTCTTACACTAAC-ACTTGTCTCGATGC-GATGCCATG
1 TCCCAGACATGTCTTACATTGACTA-TCATCTCGAGGCTGATG-CATG
* * * * * * *
50018799 TCCCAAACATGGTCTTACATAGGCTTTCATAAT-GTGGCCGATGCATG
1 TCCCAGACAT-GTCTTACATTGACTATCAT-CTCGAGGCTGATGCATG
* *
50018846 TCCCAGGCACGTCTTACA
1 TCCCAGACATGTCTTACA
50018864 CTAGCCCATA
Statistics
Matches: 124, Mismatches: 24, Indels: 19
0.74 0.14 0.11
Matches are distributed among these distances:
45 6 0.05
46 78 0.63
47 35 0.28
48 5 0.04
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (46 bp):
TCCCAGACATGTCTTACATTGACTATCATCTCGAGGCTGATGCATG
Found at i:50018860 original size:93 final size:91
Alignment explanation
Indices: 50018699--50018866 Score: 223
Period size: 93 Copynumber: 1.8 Consensus size: 91
50018689 TCTCGTAGCT
* * * * *
50018699 GATGCATGTCCCAGACATGTCTTACATTGGCTTACATCTCGAGGCTGATGCATGTCCCGGACATG
1 GATGCATGTCCCAAACATGTCTTACATAGGCTTACATATCGAGGCCGATGCATGTCCCGGACACG
50018764 TCTTACACTAACACTTGTCTCGATGC
66 TCTTACACTAACACTTGTCTCGATGC
* *
50018790 GATGCCATGTCCCAAACATGGTCTTACATAGGCTTTCATAAT-GTGGCCGATGCATGTCCCAGG-
1 GATG-CATGTCCCAAACAT-GTCTTACATAGGCTTACAT-ATCGAGGCCGATGCATGTCCC-GGA
50018853 CACGTCTTACACTA
62 CACGTCTTACACTA
50018867 GCCCATAGTA
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
91 4 0.06
92 13 0.20
93 46 0.70
94 3 0.05
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (91 bp):
GATGCATGTCCCAAACATGTCTTACATAGGCTTACATATCGAGGCCGATGCATGTCCCGGACACG
TCTTACACTAACACTTGTCTCGATGC
Found at i:50029682 original size:47 final size:48
Alignment explanation
Indices: 50029627--50029718 Score: 134
Period size: 48 Copynumber: 1.9 Consensus size: 48
50029617 TTTAATTTTA
* *
50029627 TCGTTTGAGTGCATGATT-AAT-AAAATGGGTTAATCGTGTAAAATGTG
1 TCGTTTGAGTGCACGATTAAATGAAAA-GGGTTAATCGCGTAAAATGTG
*
50029674 TCGTTTGAGTGCCCGATTAAATGAAAAGGGTTAATCGCGTAAAAT
1 TCGTTTGAGTGCACGATTAAATGAAAAGGGTTAATCGCGTAAAAT
50029719 TAAAACTTGA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
47 16 0.40
48 20 0.50
49 4 0.10
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.33
Consensus pattern (48 bp):
TCGTTTGAGTGCACGATTAAATGAAAAGGGTTAATCGCGTAAAATGTG
Found at i:50039357 original size:27 final size:27
Alignment explanation
Indices: 50039327--50039504 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
50039317 ATATTGAGTC
* *
50039327 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
50039354 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
50039381 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
50039409 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
50039436 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
50039463 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
50039490 CGCATACTTAGTGCT
1 CGCACACTTAGTGCT
50039505 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:50039466 original size:82 final size:81
Alignment explanation
Indices: 50039348--50039503 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
50039338 TGCTATATAA
* *
50039348 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
50039413 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
50039430 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
*
50039494 TACTTAGTGC
65 CACTTAGTGC
50039504 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 51 0.77
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:50039487 original size:54 final size:54
Alignment explanation
Indices: 50039327--50039503 Score: 196
Period size: 54 Copynumber: 3.3 Consensus size: 54
50039317 ATATTGAGTC
* * * *
50039327 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
50039381 CGCACACTTAGTGC-TACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
50039436 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
*
50039490 CGCATACTTAGTGC
1 CGCACACTTAGTGC
50039504 TGTACAATTT
Statistics
Matches: 103, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
52 1 0.01
54 56 0.54
55 45 0.44
56 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:50044312 original size:34 final size:34
Alignment explanation
Indices: 50044241--50044319 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 34
50044231 TATGTTAATA
* ** *
50044241 GGCTTAGGCCCAGACTACTACTGTTACTGGAACG
1 GGCTAAGGCCCAGACTACTACTGTTACTAAAAAG
* * * *
50044275 GGCTCAGGCCCAGATTGCTGCTGTTACTAAAAAG
1 GGCTAAGGCCCAGACTACTACTGTTACTAAAAAG
50044309 GGCTAAGGCCC
1 GGCTAAGGCCC
50044320 TAGCTGTTAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.22
Consensus pattern (34 bp):
GGCTAAGGCCCAGACTACTACTGTTACTAAAAAG
Found at i:50051918 original size:34 final size:34
Alignment explanation
Indices: 50051880--50051962 Score: 121
Period size: 34 Copynumber: 2.4 Consensus size: 34
50051870 CTGATATGTT
* *
50051880 AATGGGCTTAGGCCCAGACTGCTACTGTTACTGA
1 AATGGGCTAAGGCCCAGACTGCTACAGTTACTGA
* *
50051914 AATGGGCTCAGGCCCAGATTGCTACAGTTACTGA
1 AATGGGCTAAGGCCCAGACTGCTACAGTTACTGA
*
50051948 AAAGGGCTAAGGCCC
1 AATGGGCTAAGGCCC
50051963 TAGCTGTTTC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (34 bp):
AATGGGCTAAGGCCCAGACTGCTACAGTTACTGA
Found at i:50058320 original size:27 final size:26
Alignment explanation
Indices: 50058276--50058405 Score: 134
Period size: 27 Copynumber: 4.9 Consensus size: 26
50058266 AGGAAGCGTC
* * *
50058276 CTGGTGGCTATGCGACATTTATCTAAT
1 CTGGTGGCTCTGCCACA-TTATCTATT
* * *
50058303 CTGGTGGCTTTGCCACATATATTTGTT
1 CTGGTGGCTCTGCCACAT-TATCTATT
50058330 CTGGTGGCTCTGCCACAATTATCTATT
1 CTGGTGGCTCTGCCAC-ATTATCTATT
* * *
50058357 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTATT
* *
50058383 CTGGTGACTCTGTCACATTATCT
1 CTGGTGGCTCTGCCACATTATCT
50058406 GTTTTGGAAG
Statistics
Matches: 90, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
26 33 0.37
27 55 0.61
28 2 0.02
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTATT
Found at i:50058360 original size:54 final size:53
Alignment explanation
Indices: 50058276--50058405 Score: 154
Period size: 54 Copynumber: 2.5 Consensus size: 53
50058266 AGGAAGCGTC
* * * * * *
50058276 CTGGTGGCTATGCGACATTTATCTAATCTGGTGGCTTTGCCACATATATTTGTT
1 CTGGTGGCTCTGCCACAATTATCTAATCTGGTGACTCTGCCACAT-TATCTGTT
* *
50058330 CTGGTGGCTCTGCCACAATTATCTATTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTAATCTGGTGACTCTGCCACATTATCTGTT
* *
50058383 CTGGTGACTCTGTCAC-ATTATCT
1 CTGGTGGCTCTGCCACAATTATCT
50058406 GTTTTGGAAG
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
52 7 0.11
53 21 0.32
54 38 0.58
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (53 bp):
CTGGTGGCTCTGCCACAATTATCTAATCTGGTGACTCTGCCACATTATCTGTT
Found at i:50058767 original size:46 final size:46
Alignment explanation
Indices: 50058700--50058790 Score: 173
Period size: 46 Copynumber: 2.0 Consensus size: 46
50058690 TCATCCACGC
*
50058700 AGGTAATCCCCAACCATAGTGGGCTTGGAGTTGTGAGGGATTCGGT
1 AGGTAATCCCCAACCATAGTGGGCTTGGAGCTGTGAGGGATTCGGT
50058746 AGGTAATCCCCAACCATAGTGGGCTTGGAGCTGTGAGGGATTCGG
1 AGGTAATCCCCAACCATAGTGGGCTTGGAGCTGTGAGGGATTCGG
50058791 AGTGGCCATA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.22, C:0.19, G:0.35, T:0.24
Consensus pattern (46 bp):
AGGTAATCCCCAACCATAGTGGGCTTGGAGCTGTGAGGGATTCGGT
Found at i:50064762 original size:24 final size:24
Alignment explanation
Indices: 50064726--50064802 Score: 109
Period size: 24 Copynumber: 3.2 Consensus size: 24
50064716 AAGTCTGTCA
*
50064726 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGATGATAAG
*
50064750 GGATAGGATTTAGGAGATGATAAG
1 GGAGAGGATTTAGGAGATGATAAG
* * *
50064774 GGAGGGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGATGATAAG
50064798 GGAGA
1 GGAGA
50064803 ACAGTGTTGG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.32, C:0.01, G:0.43, T:0.23
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGATGATAAG
Found at i:50066252 original size:27 final size:27
Alignment explanation
Indices: 50066212--50066322 Score: 143
Period size: 27 Copynumber: 4.1 Consensus size: 27
50066202 AGGAAGCGTC
* *
50066212 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
50066239 CTGGTGGCTGTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
50066266 CTGGTGGCTCTGCCACAATTATATGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
50066293 CTGGTGACTCTGTCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
50066319 CTGG
1 CTGG
50066323 CAGCAATGCT
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 12 0.16
27 62 0.84
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:50069277 original size:39 final size:39
Alignment explanation
Indices: 50069157--50069278 Score: 145
Period size: 39 Copynumber: 3.1 Consensus size: 39
50069147 TGTAATTATA
* *
50069157 CCTGAACGCACATACATGCCCCTATTGTACTTCGGTACC
1 CCTGAATGCACATACATGCCCCTGTTGTACTTCGGTACC
* * * * *
50069196 CTTGAATGCACATACAAGCCCTTGTTGTACTTCGGAATC
1 CCTGAATGCACATACATGCCCCTGTTGTACTTCGGTACC
** * *
50069235 CCTGAATGCACATATGTGCCCCTGTAGTACTTTGGTACC
1 CCTGAATGCACATACATGCCCCTGTTGTACTTCGGTACC
50069274 CCTGA
1 CCTGA
50069279 TTTGAACTTA
Statistics
Matches: 67, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (39 bp):
CCTGAATGCACATACATGCCCCTGTTGTACTTCGGTACC
Found at i:50069444 original size:23 final size:23
Alignment explanation
Indices: 50069414--50069462 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
50069404 CTATGTGTCA
50069414 TTTTGTAGATCACTTTTGCTGAC
1 TTTTGTAGATCACTTTTGCTGAC
50069437 TTTTGTAGATCACTTTTGCTGAC
1 TTTTGTAGATCACTTTTGCTGAC
50069460 TTT
1 TTT
50069463 GGATAGATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.51
Consensus pattern (23 bp):
TTTTGTAGATCACTTTTGCTGAC
Found at i:50076447 original size:46 final size:45
Alignment explanation
Indices: 50076387--50076562 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
50076377 TATTTGGGCA
*
50076387 TCCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
50076433 TCCGAACTCATTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * *
50076480 TCCGAGCTCGTTGAATTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
50076526 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50076563 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.62
47 29 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:50076542 original size:93 final size:93
Alignment explanation
Indices: 50076383--50076554 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
50076373 AGGATATTTG
* * *
50076383 GGCATCCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAG
1 GGCATCCGAAGTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
50076448 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
50076476 GGCATCCG-AGCTCGTTGAATTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGA
1 GGCATCCGAAG-TCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGA
50076540 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
50076555 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAAGTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:50079777 original size:23 final size:23
Alignment explanation
Indices: 50079745--50079798 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
50079735 AAATGGTATT
50079745 TGAG-TATGAATGCATAAATGTA
1 TGAGTTATGAATGCATAAATGTA
50079767 TGAGTTATGAATGCATAAATGTA
1 TGAGTTATGAATGCATAAATGTA
50079790 TGAGTTATG
1 TGAGTTATG
50079799 TATGTTAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 4 0.13
23 27 0.87
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.35
Consensus pattern (23 bp):
TGAGTTATGAATGCATAAATGTA
Found at i:50080139 original size:21 final size:21
Alignment explanation
Indices: 50080115--50080267 Score: 76
Period size: 21 Copynumber: 7.0 Consensus size: 21
50080105 CAGGCTTCGA
*
50080115 ACTATTACTACTGCTGCTACT
1 ACTACTACTACTGCTGCTACT
* *
50080136 ACTACTGTTACTATTGCTACTAC-
1 ACTAC---TACTACTGCTGCTACT
* * *
50080159 AGCAACTGCTACTGTTGCTACTGCT
1 A-CTACTACTACTGCTGCTA---CT
* * *
50080184 ACTACTGCTACTACAGCTACT
1 ACTACTACTACTGCTGCTACT
* *
50080205 ACT-CTTGCTATTGCTGCTACT
1 ACTAC-TACTACTGCTGCTACT
** * *
50080226 ACGGCTACTATTGTTGCTACT
1 ACTACTACTACTGCTGCTACT
*
50080247 GCTACTACTACTGCTGCTACT
1 ACTACTACTACTGCTGCTACT
50080268 CTTACTCCTA
Statistics
Matches: 99, Mismatches: 23, Indels: 20
0.70 0.16 0.14
Matches are distributed among these distances:
20 1 0.01
21 64 0.65
22 1 0.01
23 1 0.01
24 31 0.31
25 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.14, T:0.36
Consensus pattern (21 bp):
ACTACTACTACTGCTGCTACT
Found at i:50080146 original size:24 final size:24
Alignment explanation
Indices: 50080120--50080267 Score: 106
Period size: 24 Copynumber: 6.2 Consensus size: 24
50080110 TTCGAACTAT
* *
50080120 TACTACTGCTGCTACTACTACTGT
1 TACTACTGCTACTACTACTACTGC
* *
50080144 TACTATTGCTACTAC-AGCAACTGC
1 TACTACTGCTACTACTA-CTACTGC
** *
50080168 TACTGTTGCTACTGCTACTACTGC
1 TACTACTGCTACTACTACTACTGC
*
50080192 TACTACAGCTACTACT-CT--TGC
1 TACTACTGCTACTACTACTACTGC
* * * *
50080213 TATTGCTGCTACTACGGCTACTATTGT
1 TACTACTGCTACTA---CTACTACTGC
* *
50080240 TGCTACTGCTACTACTACTGCTGC
1 TACTACTGCTACTACTACTACTGC
50080264 TACT
1 TACT
50080268 CTTACTCCTA
Statistics
Matches: 94, Mismatches: 22, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
21 14 0.15
23 3 0.03
24 61 0.65
25 3 0.03
27 13 0.14
ACGTcount: A:0.21, C:0.29, G:0.14, T:0.36
Consensus pattern (24 bp):
TACTACTGCTACTACTACTACTGC
Found at i:50080147 original size:9 final size:9
Alignment explanation
Indices: 50080134--50080255 Score: 73
Period size: 9 Copynumber: 12.9 Consensus size: 9
50080124 ACTGCTGCTA
50080134 CTACTACTG
1 CTACTACTG
* *
50080143 TTACTATTG
1 CTACTACTG
*
50080152 CTACTACAG
1 CTACTACTG
*
50080161 CAACTGCTACTG
1 ---CTACTACTG
* *
50080173 TTGCTACTG
1 CTACTACTG
50080182 CTACTACTG
1 CTACTACTG
*
50080191 CTACTACAG
1 CTACTACTG
50080200 CTACTACTCTTG
1 CTACTA--C-TG
* *
50080212 CTATTGCTG
1 CTACTACTG
*
50080221 CTACTACGG
1 CTACTACTG
*
50080230 CTACTATTG
1 CTACTACTG
* *
50080239 TTGCTACTG
1 CTACTACTG
50080248 CTACTACT
1 CTACTACT
50080256 ACTGCTGCTA
Statistics
Matches: 83, Mismatches: 24, Indels: 12
0.70 0.20 0.10
Matches are distributed among these distances:
9 69 0.83
10 1 0.01
11 1 0.01
12 12 0.14
ACGTcount: A:0.21, C:0.29, G:0.14, T:0.36
Consensus pattern (9 bp):
CTACTACTG
Found at i:50080156 original size:30 final size:30
Alignment explanation
Indices: 50080115--50080259 Score: 118
Period size: 30 Copynumber: 4.9 Consensus size: 30
50080105 CAGGCTTCGA
* *
50080115 ACTATTACTACTGCTGCTACTACTACTGTT
1 ACTATTGCTACTACTGCTACTACTACTGTT
* * *
50080145 ACTATTGCTACTACAGCAACTGCTACTGTT
1 ACTATTGCTACTACTGCTACTACTACTGTT
* * **
50080175 GCTACTGCTACTACTGCTACTAC-AGCTACT
1 ACTATTGCTACTACTGCTACTACTA-CTGTT
* * * *
50080205 ACTCTTGCTA-T--TGCTGCTACTACGGCT
1 ACTATTGCTACTACTGCTACTACTACTGTT
* *
50080232 ACTATTGTTGCTACTGCTACTACTACTG
1 ACTATTGCTACTACTGCTACTACTACTG
50080260 CTGCTACTCT
Statistics
Matches: 87, Mismatches: 23, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
27 18 0.21
28 2 0.02
29 2 0.02
30 65 0.75
ACGTcount: A:0.22, C:0.28, G:0.14, T:0.36
Consensus pattern (30 bp):
ACTATTGCTACTACTGCTACTACTACTGTT
Found at i:50080204 original size:15 final size:15
Alignment explanation
Indices: 50080120--50080195 Score: 62
Period size: 15 Copynumber: 4.9 Consensus size: 15
50080110 TTCGAACTAT
* *
50080120 TACTACTGCTGCTAC
1 TACTACTGCTACTGC
*
50080135 TACTACTGTTACTATTGC
1 TACTACTG---CTACTGC
* *
50080153 TACTACAGCAACTGC
1 TACTACTGCTACTGC
**
50080168 TACTGTTGCTACTGC
1 TACTACTGCTACTGC
50080183 TACTACTGCTACT
1 TACTACTGCTACT
50080196 ACAGCTACTA
Statistics
Matches: 46, Mismatches: 12, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
15 35 0.76
18 11 0.24
ACGTcount: A:0.22, C:0.29, G:0.13, T:0.36
Consensus pattern (15 bp):
TACTACTGCTACTGC
Found at i:50080273 original size:18 final size:19
Alignment explanation
Indices: 50080164--50080273 Score: 68
Period size: 18 Copynumber: 5.8 Consensus size: 19
50080154 ACTACAGCAA
*
50080164 CTGCTACTG-TTGCTACTG
1 CTGCTACTGCTTACTACTG
* *
50080182 CTACTACTGC-TACTACAG
1 CTGCTACTGCTTACTACTG
* * *
50080200 CTACTACT-CTTGCTATTG
1 CTGCTACTGCTTACTACTG
*
50080218 CTGCTACTACGGC-TACTATTG
1 CTGCTACT---GCTTACTACTG
*
50080239 TTGCTACTGCTACTACTACTG
1 CTGCTACTGCT--TACTACTG
50080260 CTGCTACT-CTTACT
1 CTGCTACTGCTTACT
50080274 CCTACTCTTG
Statistics
Matches: 72, Mismatches: 11, Indels: 18
0.71 0.11 0.18
Matches are distributed among these distances:
17 1 0.01
18 40 0.56
20 2 0.03
21 28 0.39
22 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.15, T:0.37
Consensus pattern (19 bp):
CTGCTACTGCTTACTACTG
Found at i:50080278 original size:21 final size:20
Alignment explanation
Indices: 50080240--50080315 Score: 59
Period size: 21 Copynumber: 3.8 Consensus size: 20
50080230 CTACTATTGT
*
50080240 TGCTACTGC-TACTACTACTGC
1 TGCTACT-CTTACTCCTACT-C
50080261 TGCTACTCTTACTCCTACTC
1 TGCTACTCTTACTCCTACTC
* * *
50080281 TTGCTGCTCTTGCTCCTGCTC
1 -TGCTACTCTTACTCCTACTC
*
50080302 --CTGCTCTTACTCCT
1 TGCTACTCTTACTCCT
50080316 GCTCCTGCTC
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
18 13 0.27
20 2 0.04
21 33 0.69
ACGTcount: A:0.11, C:0.38, G:0.12, T:0.39
Consensus pattern (20 bp):
TGCTACTCTTACTCCTACTC
Found at i:50080294 original size:6 final size:6
Alignment explanation
Indices: 50080284--50080357 Score: 103
Period size: 6 Copynumber: 12.3 Consensus size: 6
50080274 CCTACTCTTG
* * *
50080284 CTGCTC TTGCTC CTGCTC CTGCTC TTACTC CTGCTC CTGCTC CTGCTC
1 CTGCTC CTGCTC CTGCTC CTGCTC CTGCTC CTGCTC CTGCTC CTGCTC
* *
50080332 CTGCTC CTGCTC CTACTC CTACTC CT
1 CTGCTC CTGCTC CTGCTC CTGCTC CT
50080358 CCTACTACTA
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 61 1.00
ACGTcount: A:0.04, C:0.47, G:0.12, T:0.36
Consensus pattern (6 bp):
CTGCTC
Found at i:50083301 original size:31 final size:31
Alignment explanation
Indices: 50083263--50083325 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
50083253 CTCTAAGACT
*
50083263 TAGTGTTCAAATTGTATTTAATTATGTAATA
1 TAGTGTTCAAATTGTATATAATTATGTAATA
50083294 TAGTGTTCAAATTGTATATAATTATGTAATA
1 TAGTGTTCAAATTGTATATAATTATGTAATA
50083325 T
1 T
50083326 TTCAACTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.37, C:0.03, G:0.13, T:0.48
Consensus pattern (31 bp):
TAGTGTTCAAATTGTATATAATTATGTAATA
Found at i:50086563 original size:23 final size:23
Alignment explanation
Indices: 50086530--50086573 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
50086520 TTTCTTGTTG
50086530 TTTCTTAAGCC-CTCCTAACTTTT
1 TTTCTTAAGCCTCT-CTAACTTTT
*
50086553 TTTCTTGAGCCTCTCTAACTT
1 TTTCTTAAGCCTCTCTAACTT
50086574 CAGGTGGAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.16, C:0.30, G:0.07, T:0.48
Consensus pattern (23 bp):
TTTCTTAAGCCTCTCTAACTTTT
Found at i:50089979 original size:82 final size:81
Alignment explanation
Indices: 50089836--50090034 Score: 223
Period size: 82 Copynumber: 2.5 Consensus size: 81
50089826 GACCATGGTT
* * * *
50089836 AGACCATGGCAATGTGCTAAGTGAAATAAGT-GATTCGCATGTAAGACCATATCTAGGATATGGC
1 AGACCATGGCAATGTGCTAAGTGAAATAAGTCCA-TGGCATGT-AGACCATATCTAGAATATGAC
*
50089900 ATTACATTAAGTGAAATA
64 ATTACACTAAGTGAAATA
*
50089918 AGTCCATGGCAATGTGCTAAGTGAAATAAGTCCATGGCATGGT-G-CTTCATATCTAGAATATGA
1 AGACCATGGCAATGTGCTAAGTGAAATAAGTCCATGGCAT-GTAGAC--CATATCTAGAATATGA
***
50089981 CATTGTGCTAAGTGAAATA
63 CATTACACTAAGTGAAATA
50090000 AGACCATGGC-A--T-CTAAGTGAAATAAGTCCATGGCA
1 AGACCATGGCAATGTGCTAAGTGAAATAAGTCCATGGCA
50090035 ATGTGCTAAG
Statistics
Matches: 103, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
78 23 0.22
79 1 0.01
80 1 0.01
81 2 0.02
82 73 0.71
83 3 0.03
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.27
Consensus pattern (81 bp):
AGACCATGGCAATGTGCTAAGTGAAATAAGTCCATGGCATGTAGACCATATCTAGAATATGACAT
TACACTAAGTGAAATA
Found at i:50090015 original size:24 final size:27
Alignment explanation
Indices: 50089985--50090698 Score: 114
Period size: 24 Copynumber: 27.0 Consensus size: 27
50089975 ATATGACATT
50089985 GTGCTAAGTGAAATAAGACCATGGC-A
1 GTGCTAAGTGAAATAAGACCATGGCAA
*
50090011 -T-CTAAGTGAAATAAGTCCATGGCAA
1 GTGCTAAGTGAAATAAGACCATGGCAA
** *
50090036 TGTGCTAAGTGAAATAAG-TGATTCGC-A
1 -GTGCTAAGTGAAATAAGACCA-TGGCAA
* ** * * ** * *
50090063 -T-ATAAGACCATATCTAGAATATGACATT
1 GTGCTAAG-TGAAAT-AAGACCATGGCA-A
50090091 GTGCTAAGTGAAATAAGACCATGGC-A
1 GTGCTAAGTGAAATAAGACCATGGCAA
*
50090117 -T-CTAAGTGAAATAAGTCCATGGCAA
1 GTGCTAAGTGAAATAAGACCATGGCAA
** *
50090142 TGTGCTAAGTGAAATAAG-TGATTCGC-A
1 -GTGCTAAGTGAAATAAGACCA-TGGCAA
* ** * * ** * *
50090169 -T-ATAAGACCATATCTAGAATATGACATT
1 GTGCTAAG-TGAAAT-AAGACCATGGCA-A
50090197 GTGCTAAGTGAAATAAGACCATGGC-A
1 GTGCTAAGTGAAATAAGACCATGGCAA
*
50090223 -T-CTAAGTGAAATAAGTCCATGGCAA
1 GTGCTAAGTGAAATAAGACCATGGCAA
** *
50090248 TGTGCTAAGTGAAATAAG-TGATTCGC-A
1 -GTGCTAAGTGAAATAAGACCA-TGGCAA
* ** * * ** * *
50090275 -T-ATAAGACCATATCTAGAATATGACATT
1 GTGCTAAG-TGAAAT-AAGACCATGGCA-A
50090303 GTGCTAAGTGAAATAAGACCATGGC-A
1 GTGCTAAGTGAAATAAGACCATGGCAA
*
50090329 -T-CTAAGTGAAATAAGTCCATGGCAA
1 GTGCTAAGTGAAATAAGACCATGGCAA
** *
50090354 TGTGCTAAGTGAAATAAG-TGATTCGC-A
1 -GTGCTAAGTGAAATAAGACCA-TGGCAA
* ** * * ** * *
50090381 -T-ATAAGACCATATCTAGAATATGACATT
1 GTGCTAAG-TGAAAT-AAGACCATGGCA-A
50090409 GTGCTAAGTGAAATAAGACCATGGC-A
1 GTGCTAAGTGAAATAAGACCATGGCAA
*
50090435 -T-CTAAGTGAAATAAGTCCATGGCAA
1 GTGCTAAGTGAAATAAGACCATGGCAA
** *
50090460 TGTGCTAAGTGAAATAAG-TGATTCGC-A
1 -GTGCTAAGTGAAATAAGACCA-TGGCAA
* ** * * ** * *
50090487 -T-ATAAGACCATATCTAGAATATGACATT
1 GTGCTAAG-TGAAAT-AAGACCATGGCA-A
50090515 GTGCTAAGTGAAATAAGACCATGGC-A
1 GTGCTAAGTGAAATAAGACCATGGCAA
*
50090541 -T-CTAAGTGAAATAAGTCCATGGCAA
1 GTGCTAAGTGAAATAAGACCATGGCAA
** *
50090566 TGTGCTAAGTGAAATAAG-TGATTCGC-A
1 -GTGCTAAGTGAAATAAGACCA-TGGCAA
* ** * * ** * *
50090593 -T-ATAAGACCATATCTAGAATATGACATT
1 GTGCTAAG-TGAAAT-AAGACCATGGCA-A
50090621 GTGCTAAGTGAAATAAGACCATGGC-A
1 GTGCTAAGTGAAATAAGACCATGGCAA
*
50090647 -T-CTAAGTGAAATAAGTCCATGGCAA
1 GTGCTAAGTGAAATAAGACCATGGCAA
*
50090672 TGTGCTAAGTGAAATAAGTCCATGGCA
1 -GTGCTAAGTGAAATAAGACCATGGCA
50090699 TGGTGCTTAG
Statistics
Matches: 473, Mismatches: 139, Indels: 150
0.62 0.18 0.20
Matches are distributed among these distances:
24 171 0.36
25 38 0.08
26 24 0.05
27 25 0.05
28 167 0.35
29 24 0.05
30 24 0.05
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (27 bp):
GTGCTAAGTGAAATAAGACCATGGCAA
Found at i:50090034 original size:106 final size:105
Alignment explanation
Indices: 50089907--50090690 Score: 1430
Period size: 106 Copynumber: 7.4 Consensus size: 105
50089897 GGCATTACAT
* * *
50089907 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGTCCA-TGGCATGGT-G-CTTCATA
1 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGT-GATTCGCAT-ATAGAC--CATA
50089969 TCTAGAATATGACATTGTGCTAAGTGAAATAAGACCATGGCATC
62 TCTAGAATATGACATTGTGCTAAGTGAAATAAGACCATGGCATC
50090013 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGTGATTCGCATATAAGACCATATCT
1 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGTGATTCGCATAT-AGACCATATCT
50090078 AGAATATGACATTGTGCTAAGTGAAATAAGACCATGGCATC
65 AGAATATGACATTGTGCTAAGTGAAATAAGACCATGGCATC
50090119 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGTGATTCGCATATAAGACCATATCT
1 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGTGATTCGCATAT-AGACCATATCT
50090184 AGAATATGACATTGTGCTAAGTGAAATAAGACCATGGCATC
65 AGAATATGACATTGTGCTAAGTGAAATAAGACCATGGCATC
50090225 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGTGATTCGCATATAAGACCATATCT
1 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGTGATTCGCATAT-AGACCATATCT
50090290 AGAATATGACATTGTGCTAAGTGAAATAAGACCATGGCATC
65 AGAATATGACATTGTGCTAAGTGAAATAAGACCATGGCATC
50090331 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGTGATTCGCATATAAGACCATATCT
1 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGTGATTCGCATAT-AGACCATATCT
50090396 AGAATATGACATTGTGCTAAGTGAAATAAGACCATGGCATC
65 AGAATATGACATTGTGCTAAGTGAAATAAGACCATGGCATC
50090437 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGTGATTCGCATATAAGACCATATCT
1 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGTGATTCGCATAT-AGACCATATCT
50090502 AGAATATGACATTGTGCTAAGTGAAATAAGACCATGGCATC
65 AGAATATGACATTGTGCTAAGTGAAATAAGACCATGGCATC
50090543 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGTGATTCGCATATAAGACCATATCT
1 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGTGATTCGCATAT-AGACCATATCT
50090608 AGAATATGACATTGTGCTAAGTGAAATAAGACCATGGCATC
65 AGAATATGACATTGTGCTAAGTGAAATAAGACCATGGCATC
50090649 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGT
1 TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGT
50090691 CCATGGCATG
Statistics
Matches: 671, Mismatches: 3, Indels: 8
0.98 0.00 0.01
Matches are distributed among these distances:
105 2 0.00
106 667 0.99
107 1 0.00
108 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (105 bp):
TAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGTGATTCGCATATAGACCATATCTA
GAATATGACATTGTGCTAAGTGAAATAAGACCATGGCATC
Found at i:50090811 original size:51 final size:51
Alignment explanation
Indices: 50090735--50090984 Score: 473
Period size: 51 Copynumber: 4.9 Consensus size: 51
50090725 TGAACCTTAG
*
50090735 GAATAAAATAACTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
50090786 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
50090837 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
50090888 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
50090939 GAATAAAATAGCTTTGGCCACAAGGGTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCAC
50090985 CATGTATCTG
Statistics
Matches: 196, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 196 1.00
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Done.