Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 145 of 297
Found at i:50093780 original size:39 final size:39
Alignment explanation
Indices: 50093725--50093850 Score: 198
Period size: 39 Copynumber: 3.2 Consensus size: 39
50093715 TAATGGAGAA
* *
50093725 TTATATCCTGCCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
50093764 TTATATCCGGGGTAAGTCCCAAAGGTATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
50093803 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
50093842 TTATATCCG
1 TTATATCCG
50093851 ATAAGCATGT
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:50094011 original size:39 final size:39
Alignment explanation
Indices: 50093938--50094055 Score: 139
Period size: 40 Copynumber: 3.0 Consensus size: 39
50093928 TAATGGAGAA
* * * *
50093938 TTATATCCTGCCT-AAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTG
* *
50093977 TTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTAGTA
1 TTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTG
* *
50094016 TTATATCCGGGCTTAAAGTCCCGCATGCTTTGTGGTGGTG
1 TTATATCCGGGC-TAAAGTCCCGCAGGCTTTGTGCTGGTG
50094056 ATTGGATTTG
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
39 32 0.48
40 35 0.52
ACGTcount: A:0.18, C:0.23, G:0.27, T:0.32
Consensus pattern (39 bp):
TTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTG
Found at i:50094022 original size:213 final size:215
Alignment explanation
Indices: 50093637--50094038 Score: 713
Period size: 213 Copynumber: 1.9 Consensus size: 215
50093627 TGGAATGGTT
50093637 GATAAGCATGTTGTGCTTGTGTTCAAATAATGTAAATGAAATGCTAATGTGTTATGATATATATA
1 GATAAGCATGTTGTGCTTGTGTTCAAATAATGTAAATGAAATGCTAATGTGTTATGATATATATA
50093702 TGTGTGTGCATGATAATGGAGAATTATATCCTGCCTAAGTCCCGAAGGCATTCGTGCTGGTGTTA
66 TGTGTGTGCATGATAATGGAGAATTATATCCTGCCTAAGTCCCGAAGGCATTCGTGCTGGTGTTA
* * *
50093767 TATCCGGGGTAAGTCCCAAAGGTATTCGTGCTGGTGTTATATCCGGGC-T-AAGTCCCGAAGGCA
131 TATCCGGGCTAAGTCCCAAAGGTATTCGTGCTAGTATTATATCCGGGCTTAAAGTCCCGAAGGCA
50093830 TTCGTGCTGGTATTATATCC
196 TTCGTGCTGGTATTATATCC
50093850 GATAAGCATGTTGTGCTTGTGTTCAAATAATGTAAATGAAATGCTAATGTGTTATGATATATATA
1 GATAAGCATGTTGTGCTTGTGTTCAAATAATGTAAATGAAATGCTAATGTGTTATGATATATATA
50093915 TGTGTGTGCATGATAATGGAGAATTATATCCTGCCTAAGTCCCGAAGGCATTCGTGCTGGTGTTA
66 TGTGTGTGCATGATAATGGAGAATTATATCCTGCCTAAGTCCCGAAGGCATTCGTGCTGGTGTTA
**
50093980 TATCCGGGCTAAAGTCCCGCAGGCT-TT-GTGCTAGTATTATATCCGGGCTTAAAGTCCCG
131 TATCCGGGCT-AAGTCCCAAAGG-TATTCGTGCTAGTATTATATCCGGGCTTAAAGTCCCG
50094039 CATGCTTTGT
Statistics
Matches: 180, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
213 158 0.88
214 13 0.07
215 9 0.05
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (215 bp):
GATAAGCATGTTGTGCTTGTGTTCAAATAATGTAAATGAAATGCTAATGTGTTATGATATATATA
TGTGTGTGCATGATAATGGAGAATTATATCCTGCCTAAGTCCCGAAGGCATTCGTGCTGGTGTTA
TATCCGGGCTAAGTCCCAAAGGTATTCGTGCTAGTATTATATCCGGGCTTAAAGTCCCGAAGGCA
TTCGTGCTGGTATTATATCC
Found at i:50094046 original size:40 final size:39
Alignment explanation
Indices: 50093937--50094049 Score: 138
Period size: 39 Copynumber: 2.9 Consensus size: 39
50093927 ATAATGGAGA
* * * * *
50093937 ATTATATCCTGCCT-AAGTCCCGAAGGCATTCGTGCTGGT
1 ATTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTAGT
*
50093976 GTTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTAGT
1 ATTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTAGT
*
50094015 ATTATATCCGGGCTTAAAGTCCCGCATGCTTTGTG
1 ATTATATCCGGGC-TAAAGTCCCGCAGGCTTTGTG
50094050 GTGGTGATTG
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
39 32 0.50
40 32 0.50
ACGTcount: A:0.19, C:0.24, G:0.25, T:0.32
Consensus pattern (39 bp):
ATTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTAGT
Found at i:50097233 original size:55 final size:55
Alignment explanation
Indices: 50097149--50097259 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
50097139 ATGAATGTTA
*
50097149 AGCCATATGTGTATGTATGGAAGTCAAGTTAGAGGCTTTACGACCTCACCCCCTT
1 AGCCATATGTATATGTATGGAAGTCAAGTTAGAGGCTTTACGACCTCACCCCCTT
50097204 AGCCATATGTATATGTATGGAAGTCAAGTTAGAGGCTTTACGACCTCACCCCCTT
1 AGCCATATGTATATGTATGGAAGTCAAGTTAGAGGCTTTACGACCTCACCCCCTT
50097259 A
1 A
50097260 CTAATGTGAT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (55 bp):
AGCCATATGTATATGTATGGAAGTCAAGTTAGAGGCTTTACGACCTCACCCCCTT
Found at i:50099029 original size:15 final size:15
Alignment explanation
Indices: 50098997--50099025 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
50098987 ATTTTCTGTG
50098997 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
50099012 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
50099026 ATTTTTGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:50100217 original size:45 final size:43
Alignment explanation
Indices: 50100168--50100313 Score: 154
Period size: 41 Copynumber: 3.4 Consensus size: 43
50100158 TATGTGTTTT
50100168 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATATATGGGTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATAT-TAT-GGTA
* ** * * *
50100213 CGTGTAAGACCATGTCTGAAACATCGGCATCG-TATT-TGATT
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTATGGTA
* * *
50100254 CGTGTAAGACCATGTCTGGGACAGTGGCATCGATATGA-GGTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTATGGTA
*
50100296 GCATGTAAGACCACGTCT
1 -CGTGTAAGACCACGTCT
50100314 AGGATGTTGG
Statistics
Matches: 83, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
41 30 0.36
42 6 0.07
43 16 0.19
44 3 0.04
45 28 0.34
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTATGGTA
Found at i:50101389 original size:18 final size:18
Alignment explanation
Indices: 50101366--50101400 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
50101356 AGATTTTTGT
50101366 TTTGGTTATATG-TTTATA
1 TTTGGTTA-ATGATTTATA
50101384 TTTGGTTAATGATTTAT
1 TTTGGTTAATGATTTAT
50101401 TCTTGTGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.23, C:0.00, G:0.17, T:0.60
Consensus pattern (18 bp):
TTTGGTTAATGATTTATA
Found at i:50104688 original size:28 final size:28
Alignment explanation
Indices: 50104619--50104710 Score: 120
Period size: 28 Copynumber: 3.4 Consensus size: 28
50104609 AATATGACAT
*
50104619 TGTGCTAAGTGAAATAAGACCATGGC-A
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
50104646 --T-CTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
* *
50104671 TGTGCTAAGTGAATTAAGTCCATGGCAC
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
*
50104699 GGTGCTAAGTGA
1 TGTGCTAAGTGA
50104711 GAAATTTCCC
Statistics
Matches: 57, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
24 21 0.37
25 2 0.04
27 1 0.02
28 33 0.58
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.25
Consensus pattern (28 bp):
TGTGCTAAGTGAAATAAGTCCATGGCAA
Found at i:50104800 original size:51 final size:51
Alignment explanation
Indices: 50104734--50104931 Score: 290
Period size: 51 Copynumber: 3.9 Consensus size: 51
50104724 TGAACCTTAG
*
50104734 GAATAAAATAACTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * * * *
50104785 GAATATAATGGCTTTGGATAAAAGTGTGGTACTATGTGAATGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
50104836 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAAGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
50104887 GAATAAAATAGATTTGG-CTACAAGGGTGGTACTATGTAAAGGCCA
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCA
50104932 TCGTGTATCC
Statistics
Matches: 131, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
50 1 0.01
51 130 0.99
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:50108891 original size:46 final size:46
Alignment explanation
Indices: 50108820--50109035 Score: 282
Period size: 46 Copynumber: 4.7 Consensus size: 46
50108810 GATGTGTGCT
*
50108820 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATT-ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTGACGAGAGCC
* *
50108866 AGTGTAAGACATGTCTGGGAAATGCATCGG--CATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCCATT--GACGAGAGCC
*
50108912 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATT-ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTGACGAGAGCC
* *
50108958 AGTGTAAGACATGTCTGGGAAATGCATCGG--CATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCCATT--GACGAGAGCC
50109004 AGTGTAAGACATGTCTGGGACATGCATCGGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC
50109036 TCGAGATATA
Statistics
Matches: 149, Mismatches: 10, Indels: 20
0.83 0.06 0.11
Matches are distributed among these distances:
43 8 0.05
46 137 0.92
49 4 0.03
ACGTcount: A:0.29, C:0.19, G:0.31, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCCATTGACGAGAGCC
Found at i:50108964 original size:92 final size:92
Alignment explanation
Indices: 50108817--50109035 Score: 438
Period size: 92 Copynumber: 2.4 Consensus size: 92
50108807 TGAGATGTGT
50108817 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACATGTCT
50108882 GGGAAATGCATCGGCATTGAGACGAGA
66 GGGAAATGCATCGGCATTGAGACGAGA
50108909 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACATGTCT
50108974 GGGAAATGCATCGGCATTGAGACGAGA
66 GGGAAATGCATCGGCATTGAGACGAGA
50109001 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC
50109036 TCGAGATATA
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 127 1.00
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACATGTCT
GGGAAATGCATCGGCATTGAGACGAGA
Found at i:50109099 original size:138 final size:137
Alignment explanation
Indices: 50108810--50109275 Score: 439
Period size: 138 Copynumber: 3.3 Consensus size: 137
50108800 CATTGGGTGA
*
50108810 GATGTGTGCTAGTGTAAGACATGTCTGGGACATG-CATCGGCCACATT--ATGAGAGCCAGTGTA
1 GATGTGTGCCAGTGTAAGACATGTCTGGGACATGACATCGG---CATTAGATGAGAGCCAGTGTA
* * * ** * *
50108872 AGACATGTCTGGGAAATGCATCGGCATTGAGA-CGAGAGCTAGTGTAAGACATGTCTGGGACATG
63 AGACATGTCTGGGACATGCATCGGCCTCGAGATATAAAGCTAGTGTAAGACCTGTCTGGGACATG
50108936 CATCGGCCACATT
128 CATC-G--ACATT
* * * * *
50108949 -ATGAGAGCCAGTGTAAGACATGTCTGGGAAATG-CATCGGCATTGAGACGAGAGCTAGTGTAAG
1 GATGTGTGCCAGTGTAAGACATGTCTGGGACATGACATCGGCATT-AGATGAGAGCCAGTGTAAG
*
50109012 ACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTGTTTGGGACATAG
65 ACATGTCTGGGACATGCATCGGCCTCGAGATATA-AAGCTAGTGTAAGACCTGTCTGGGACAT-G
*
50109077 CGTC-AGC-TT
128 CATCGA-CATT
* * ** * *
50109086 GTTGTGTGTCAGTGTAAGATTTGTCTGGGACATGACATCGACACCTATAGATGAGATCCAGTGTA
1 GATGTGTGCCAGTGTAAGACATGTCTGGGACATGACATCGGCA--T-TAGATGAGAGCCAGTGTA
* * *
50109151 AGACCTGTCTGGGACATAGCAAT-GACCTCGATATATGAAAG-TCAGTGTAAGACCTGTCTGGGA
63 AGACATGTCTGGGACAT-GC-ATCGGCCTCGAGATAT-AAAGCT-AGTGTAAGACCTGTCTGGGA
*
50109214 CATGGCATCGACTTT
124 CAT-GCATCGACATT
*
50109229 GATGTGTTAGCCAGTGTAAGACCATGTCTGGGACATGACACCGGCAT
1 GATGTG-T-GCCAGTGTAAGA-CATGTCTGGGACATGACATCGGCAT
50109276 CTTATCTCAT
Statistics
Matches: 268, Mismatches: 38, Indels: 37
0.78 0.11 0.11
Matches are distributed among these distances:
135 4 0.01
137 3 0.01
138 104 0.39
139 8 0.03
140 25 0.09
141 36 0.13
142 44 0.16
143 11 0.04
144 2 0.01
145 11 0.04
146 20 0.07
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (137 bp):
GATGTGTGCCAGTGTAAGACATGTCTGGGACATGACATCGGCATTAGATGAGAGCCAGTGTAAGA
CATGTCTGGGACATGCATCGGCCTCGAGATATAAAGCTAGTGTAAGACCTGTCTGGGACATGCAT
CGACATT
Found at i:50112885 original size:28 final size:27
Alignment explanation
Indices: 50112845--50112897 Score: 88
Period size: 28 Copynumber: 1.9 Consensus size: 27
50112835 AAGGTTTTTA
50112845 GACATGGGCGTGTCATGGCCGTGTGAGG
1 GACATGGGCGTGTCA-GGCCGTGTGAGG
*
50112873 GACATTGGCGTGTCAGGCCGTGTGA
1 GACATGGGCGTGTCAGGCCGTGTGA
50112898 AAGCCCCTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 10 0.42
28 14 0.58
ACGTcount: A:0.15, C:0.19, G:0.43, T:0.23
Consensus pattern (27 bp):
GACATGGGCGTGTCAGGCCGTGTGAGG
Found at i:50126759 original size:27 final size:27
Alignment explanation
Indices: 50126727--50127260 Score: 213
Period size: 27 Copynumber: 19.7 Consensus size: 27
50126717 TTAGTTTACC
* *
50126727 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ****
50126754 GAATTACCGTTCTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ***
50126781 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* **** *
50126808 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
50126835 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
* * *
50126862 AAATTACTAAAATACCCCCTGATTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
*
50126890 AAATTACTAAAATACCCTCGACTTGTA-A
1 AAATTACCAAAATACCCTCGA-TT-TATA
*
50126918 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* **** * *
50126945 GAATTACTGTTATAGCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* ***** * *
50126972 GAATTACTGTTTTACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
*** * *
50126999 AAATTACCATTTTACCCTCGA-TTGTG
1 AAATTACCAAAATACCCTCGATTTATA
** * ***
50127025 AAATTACTGAAATACCC-CTATAGGGTA
1 AAATTACCAAAATACCCTCGAT-TTATA
* * * *
50127052 GAATTACCAAAACACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
* * *
50127079 AAATTACCAAAATACCACT-GGTTTGTG
1 AAATTACCAAAATACC-CTCGATTTATA
* * *
50127106 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* *
50127133 AAATTACCAAAATACCC-CTAATTTACA
1 AAATTACCAAAATACCCTC-GATTTATA
* *
50127160 AAATTA-CAGAAATACCCTTGACTTTCTAA
1 AAATTACCA-AAATACCCTCGA-TTTAT-A
* * * * *
50127189 AAATTA-GAGAAATACCATTGGTTTACA
1 AAATTACCA-AAATACCCTCGATTTATA
* * *
50127216 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
50127243 GATTTACCAAAACACCCT
1 AAATTACCAAAATACCCT
50127261 TGTAGGATGA
Statistics
Matches: 405, Mismatches: 85, Indels: 34
0.77 0.16 0.06
Matches are distributed among these distances:
25 2 0.00
26 22 0.05
27 303 0.75
28 58 0.14
29 20 0.05
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:50126889 original size:28 final size:27
Alignment explanation
Indices: 50126820--50126952 Score: 140
Period size: 28 Copynumber: 4.9 Consensus size: 27
50126810 ATTACCGTTT
* **
50126820 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCCCGATTTGTAAAATTACTAAAA
* *
50126847 TACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCCCGATTTGTAAAATTACTAAAA
50126874 TACCCCCTGATTTGTAAAATTACTAAAA
1 TACCCCC-GATTTGTAAAATTACTAAAA
* * * *
50126902 TACCCTCGACTTGTAAAAATTACCAAAG
1 TACCCCCGATTTGT-AAAATTACTAAAA
* * *
50126930 TACCCTCGATTTATAGAATTACT
1 TACCCCCGATTTGTAAAATTACT
50126953 GTTATAGCCT
Statistics
Matches: 89, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
27 41 0.46
28 48 0.54
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.32
Consensus pattern (27 bp):
TACCCCCGATTTGTAAAATTACTAAAA
Found at i:50127015 original size:137 final size:135
Alignment explanation
Indices: 50126793--50127041 Score: 309
Period size: 137 Copynumber: 1.8 Consensus size: 135
50126783 ATTACCATTT
* *
50126793 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCCTGGTT
1 TACCCTCGATTTATAGAATTACCGTTATACCCTCGATTTACAAAATTACTAAAATACCCCTGATT
** *
50126858 TGTAAAATTACTAAAATACCCCCTGATTTGTAAAATTACTAAAATACCCTCGACTTGTAAAAATT
66 TACAAAATTACCAAAATACCCCC-GA-TTGTAAAATTACTAAAATACCCTCGACTTGTAAAAATT
50126923 ACCAAAG
129 ACCAAAG
* * * **** *
50126930 TACCCTCGATTTATAGAATTACTGTTATAGCCTCGATTTACAGAATTACTGTTTTACCCTTGATT
1 TACCCTCGATTTATAGAATTACCGTTATACCCTCGATTTACAAAATTACTAAAATACCCCTGATT
*** * * *
50126995 TACAAAATTACCATTTTACCCTCGATTGTGAAATTACTGAAATACCC
66 TACAAAATTACCAAAATACCCCCGATTGTAAAATTACTAAAATACCC
50127042 CTATAGGGTA
Statistics
Matches: 93, Mismatches: 19, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
135 20 0.22
136 2 0.02
137 71 0.76
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.35
Consensus pattern (135 bp):
TACCCTCGATTTATAGAATTACCGTTATACCCTCGATTTACAAAATTACTAAAATACCCCTGATT
TACAAAATTACCAAAATACCCCCGATTGTAAAATTACTAAAATACCCTCGACTTGTAAAAATTAC
CAAAG
Found at i:50128028 original size:25 final size:25
Alignment explanation
Indices: 50127981--50128028 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
50127971 TTATAGTATG
* * *
50127981 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
*
50128006 AAAATGACCATTATACCCTTAGG
1 AAAATGACCATTATACCCCTAGG
50128029 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:50128089 original size:20 final size:20
Alignment explanation
Indices: 50128064--50128130 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
50128054 GATATGATAT
*
50128064 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
50128084 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
50128104 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
50128124 ACATGAT
1 ACATGAT
50128131 GTATTCATAA
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:50128209 original size:26 final size:26
Alignment explanation
Indices: 50128180--50128316 Score: 201
Period size: 26 Copynumber: 5.3 Consensus size: 26
50128170 GAGGAAGTGC
50128180 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
50128206 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
50128232 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
50128258 AAAAGGGCTT-TGCCCCAGTTTACATG
1 AAAAGGGCTTATGCCCCAGTTTA-TTG
50128284 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
50128307 AAAAGAGGCT
1 AAAAG-GGCT
50128317 AGGCCTCCAG
Statistics
Matches: 103, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 15 0.15
26 78 0.76
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:50129503 original size:17 final size:17
Alignment explanation
Indices: 50129477--50129510 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
50129467 CTCGAGTTCC
*
50129477 CTACATTGGCTGCCGAA
1 CTACACTGGCTGCCGAA
50129494 CTACACTGGCTGCCGAA
1 CTACACTGGCTGCCGAA
50129511 GTAGTCTAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.21
Consensus pattern (17 bp):
CTACACTGGCTGCCGAA
Found at i:50132032 original size:93 final size:93
Alignment explanation
Indices: 50131918--50132089 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
50131908 CGCCCATAAG
* *
50131918 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCACATCCTTAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCACATCCATAAGTGAACTCGGACTCAACTC
50131982 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
50132011 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
50132076 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
50132090 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:50132084 original size:46 final size:46
Alignment explanation
Indices: 50131911--50132086 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
50131901 TGTAACCCGC
* *
50131911 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCACAT
* *
50131957 CCTTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
*
50132007 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
50132050 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
50132087 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
44 2 0.02
45 4 0.04
46 60 0.54
47 29 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:50141491 original size:17 final size:17
Alignment explanation
Indices: 50141469--50141516 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
50141459 AAAAGAAAAT
** *
50141469 AATAAAATTGAAATGAA
1 AATAAAATAAAAATAAA
50141486 AATAAAATAAAAATAAA
1 AATAAAATAAAAATAAA
50141503 AATAAAAATAAAAA
1 AAT-AAAATAAAAA
50141517 GATAGGAGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 17 0.63
18 10 0.37
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (17 bp):
AATAAAATAAAAATAAA
Found at i:50141492 original size:5 final size:6
Alignment explanation
Indices: 50141479--50141516 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
50141469 AATAAAATTG
*
50141479 AAATGA AAAT-A AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
50141517 GATAGGAGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.16
6 26 0.84
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:50150754 original size:58 final size:57
Alignment explanation
Indices: 50150678--50150882 Score: 243
Period size: 58 Copynumber: 3.6 Consensus size: 57
50150668 ATCCGTGAGC
* *
50150678 TGTTTTATACTTGCAAAAAATTTGAAAGATAATCAACTAGGGATGTGAATTCGCAAGT
1 TGTTTTATACTTGTAAAAAATTTGAAAGATAATCAACTGGGGATG-GAATTCGCAAGT
* * **
50150736 TGTTTTATACTTGAAAAAAAATTGAAAGATAATCAACTGGGGATGGAA-TCAATAAGT
1 TGTTTTATACTTGTAAAAAATTTGAAAGATAATCAACTGGGGATGGAATTC-GCAAGT
* * * * *
50150793 TGTTTTATACATGTGAAAATTTTGAAAGGTAATCAACTGGGGATGCGAATTCGCGAA-A
1 TGTTTTATACTTGTAAAAAATTTGAAAGATAATCAACTGGGGATG-GAATTCGC-AAGT
* *
50150851 TGTTTTATACTTGTGAAAATTTTGAAAGATAA
1 TGTTTTATACTTGTAAAAAATTTGAAAGATAA
50150883 CATATAACAC
Statistics
Matches: 127, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
56 2 0.02
57 46 0.36
58 75 0.59
59 4 0.03
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.33
Consensus pattern (57 bp):
TGTTTTATACTTGTAAAAAATTTGAAAGATAATCAACTGGGGATGGAATTCGCAAGT
Found at i:50153897 original size:3 final size:3
Alignment explanation
Indices: 50153889--50153966 Score: 74
Period size: 3 Copynumber: 26.3 Consensus size: 3
50153879 AAATAGATAT
* *
50153889 TTA TTA TTA TAA TTA TTAA TTA TTA TTG TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA T-TA TTA TTA TTA TTA
*
50153935 TTA TTA TTA TT- TAA TTGA -TA TTA -TA TTA TTA T
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA T
50153967 GAAATAAATT
Statistics
Matches: 63, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
2 5 0.08
3 53 0.84
4 5 0.08
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:50153927 original size:34 final size:37
Alignment explanation
Indices: 50153889--50153966 Score: 110
Period size: 34 Copynumber: 2.2 Consensus size: 37
50153879 AAATAGATAT
50153889 TTATTATTATAATTATTAATTA-TT-ATTG-T-TTATA
1 TTATTATTATAATTATT-ATTATTTAATTGATATTATA
*
50153923 TTATTATTATTATTATTATTATTTAATTGATATTATA
1 TTATTATTATAATTATTATTATTTAATTGATATTATA
50153960 TTATTAT
1 TTATTAT
50153967 GAAATAAATT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
33 4 0.10
34 18 0.46
35 4 0.10
36 1 0.03
37 12 0.31
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.63
Consensus pattern (37 bp):
TTATTATTATAATTATTATTATTTAATTGATATTATA
Found at i:50153930 original size:37 final size:37
Alignment explanation
Indices: 50153889--50153966 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
50153879 AAATAGATAT
*
50153889 TTATTATTATAATTATTAATTATTATTG-T-TTATATTA
1 TTATTATTATAATTATT-ATT-TAATTGATATTATATTA
*
50153926 TTATTATTATTATTATTATTTAATTGATATTATATTA
1 TTATTATTATAATTATTATTTAATTGATATTATATTA
50153963 TTAT
1 TTAT
50153967 GAAATAAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
35 5 0.14
36 4 0.11
37 28 0.76
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.63
Consensus pattern (37 bp):
TTATTATTATAATTATTATTTAATTGATATTATATTA
Found at i:50154328 original size:21 final size:20
Alignment explanation
Indices: 50154304--50154346 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
50154294 AGCAAACGAG
50154304 AAAG-AAAGAAAGAAAGGAGAA
1 AAAGAAAAGAAA-AAAGGA-AA
50154325 AAAGAAAAGAAAAAAGGAAA
1 AAAGAAAAGAAAAAAGGAAA
50154345 AA
1 AA
50154347 CTAGAGATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 4 0.19
21 10 0.48
22 7 0.33
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (20 bp):
AAAGAAAAGAAAAAAGGAAA
Found at i:50154330 original size:13 final size:12
Alignment explanation
Indices: 50154245--50154345 Score: 53
Period size: 13 Copynumber: 7.9 Consensus size: 12
50154235 TAAAGTAAAT
* *
50154245 AAAAAGGAAATG
1 AAAAAAGAAAAG
50154257 AAAAAA-AAAAG
1 AAAAAAGAAAAG
*
50154268 AAAGAAACAAAAGG
1 AAA-AAAGAAAA-G
*
50154282 AAAGAACAGAATAG
1 AAA-AA-AGAAAAG
* *
50154296 -CAAACGAGAAAG
1 AAAAAAGA-AAAG
*
50154308 AAAGAAAGAAAGG
1 AAA-AAAGAAAAG
50154321 AGAAAAAGAAAAG
1 A-AAAAAGAAAAG
50154334 AAAAAAGGAAAA
1 AAAAAA-GAAAA
50154346 ACTAGAGATT
Statistics
Matches: 69, Mismatches: 11, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
11 9 0.13
12 18 0.26
13 24 0.35
14 14 0.20
15 4 0.06
ACGTcount: A:0.72, C:0.04, G:0.22, T:0.02
Consensus pattern (12 bp):
AAAAAAGAAAAG
Found at i:50157180 original size:69 final size:69
Alignment explanation
Indices: 50157093--50157343 Score: 236
Period size: 69 Copynumber: 3.6 Consensus size: 69
50157083 TGACCGCCAG
* * * * *
50157093 GAGCTTTACTCTCTCTAACTGTGTTGGAGGCTGTGGCTCTTCACCTGCGAGCCTAAATATGATAG
1 GAGCTTTGCTCTCGCTAACTGTGTTAGAGGCTGCGGCTCTTCACCTGCGAGCCTAAATATGACAG
50157158 TTGA
66 TTGA
* ** * * * * * *
50157162 GAGTTTTGCTCTCGCTAACTGTGTTAGAGGCTGTAGCTCTTCGCATGCAAGACTCAATATTACAG
1 GAGCTTTGCTCTCGCTAACTGTGTTAGAGGCTGCGGCTCTTCACCTGCGAGCCTAAATATGACAG
** *
50157227 CCGG
66 TTGA
* * * * * * *
50157231 GAGCATTGCTCTCGCTAACTGTATTAGAGGCTACGGCT-TTTAGCCTACGAGCCTTAGTATGACA
1 GAGCTTTGCTCTCGCTAACTGTGTTAGAGGCTGCGGCTCTTCA-CCTGCGAGCCTAAATATGACA
50157295 -TATGA
65 GT-TGA
* *
50157300 GAGCTTTGCTCTCGCTAACTGTGTTAAAAGCTGCGGCTCTTCAC
1 GAGCTTTGCTCTCGCTAACTGTGTTAGAGGCTGCGGCTCTTCAC
50157344 TTATGAGCCT
Statistics
Matches: 140, Mismatches: 39, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
68 2 0.01
69 135 0.96
70 3 0.02
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31
Consensus pattern (69 bp):
GAGCTTTGCTCTCGCTAACTGTGTTAGAGGCTGCGGCTCTTCACCTGCGAGCCTAAATATGACAG
TTGA
Found at i:50157352 original size:69 final size:69
Alignment explanation
Indices: 50157231--50157365 Score: 182
Period size: 69 Copynumber: 2.0 Consensus size: 69
50157221 TTACAGCCGG
* * *
50157231 GAGCATTGCTCTCGCTAACTGTATTAGAGGCTACGGCTTTTAGCCTACGAGCCTTAGTATGACAT
1 GAGCATTGCTCTCGCTAACTGTATTAAAAGCTACGGCTTTCAGCCTACGAGCCTTAGTATGACAT
50157296 ATGA
66 ATGA
* * * * *
50157300 GAGCTTTGCTCTCGCTAACTGTGTTAAAAGCTGCGGCTCTTCA-CTTATGAGCCTTAGTATGACA
1 GAGCATTGCTCTCGCTAACTGTATTAAAAGCTACGGCT-TTCAGCCTACGAGCCTTAGTATGACA
50157364 TA
65 TA
50157366 AATGTTGATA
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
69 54 0.95
70 3 0.05
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (69 bp):
GAGCATTGCTCTCGCTAACTGTATTAAAAGCTACGGCTTTCAGCCTACGAGCCTTAGTATGACAT
ATGA
Found at i:50163140 original size:21 final size:21
Alignment explanation
Indices: 50163102--50163141 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
50163092 ACTGCTCAAG
*
50163102 AGAAGCCGATTGATCCATCTC
1 AGAAGCCGATTCATCCATCTC
50163123 AGAAGCCGGATTCA-CCATC
1 AGAAGCC-GATTCATCCATC
50163142 AAGACTGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (21 bp):
AGAAGCCGATTCATCCATCTC
Found at i:50167634 original size:94 final size:94
Alignment explanation
Indices: 50167473--50167662 Score: 371
Period size: 94 Copynumber: 2.0 Consensus size: 94
50167463 CCTCAAGGTC
*
50167473 TAAAAATAGTGCTTTTCTCCTTACCGTTCAGTGAAGAAGACATGAAAATGATGATAATAACTTTT
1 TAAAAATAGTGCTTTTCTCCTTACCATTCAGTGAAGAAGACATGAAAATGATGATAATAACTTTT
50167538 TTTATTTTATTTAATTTAATTTATCAAAT
66 TTTATTTTATTTAATTTAATTTATCAAAT
50167567 TAAAAATAGTGCTTTTCTCCTTACCATTCAGTGAAGAAGACATGAAAATGATGATAATAACTTTT
1 TAAAAATAGTGCTTTTCTCCTTACCATTCAGTGAAGAAGACATGAAAATGATGATAATAACTTTT
50167632 TTTATTTTATTTAATTTAATTTATCAAAT
66 TTTATTTTATTTAATTTAATTTATCAAAT
50167661 TA
1 TA
50167663 CCATTTTAAC
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 95 1.00
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.43
Consensus pattern (94 bp):
TAAAAATAGTGCTTTTCTCCTTACCATTCAGTGAAGAAGACATGAAAATGATGATAATAACTTTT
TTTATTTTATTTAATTTAATTTATCAAAT
Found at i:50168600 original size:22 final size:22
Alignment explanation
Indices: 50168575--50168617 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
50168565 TTGACTCTGC
*
50168575 TGTCTCTAATACTGACATTCTT
1 TGTCTCTAATACAGACATTCTT
*
50168597 TGTCTCTAGTACAGACATTCT
1 TGTCTCTAATACAGACATTCT
50168618 CTGCGAACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (22 bp):
TGTCTCTAATACAGACATTCTT
Found at i:50169849 original size:30 final size:30
Alignment explanation
Indices: 50169814--50169871 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
50169804 TAAGCACTTC
50169814 CACACGGGT-GATCCACACGCCCGTGTGTGA
1 CACACGGGTAGA-CCACACGCCCGTGTGTGA
* *
50169844 CACACGGGTAGACCATACGCTCGTGTGT
1 CACACGGGTAGACCACACGCCCGTGTGT
50169872 CCTGGCCGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (30 bp):
CACACGGGTAGACCACACGCCCGTGTGTGA
Found at i:50178020 original size:12 final size:12
Alignment explanation
Indices: 50178003--50178035 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
50177993 CTAAATTAAT
50178003 AAAATAAAATAA
1 AAAATAAAATAA
50178015 AAAATAAAATAA
1 AAAATAAAATAA
*
50178027 ATAATAAAA
1 AAAATAAAA
50178036 CCAAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:50178022 original size:17 final size:17
Alignment explanation
Indices: 50178000--50178055 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
50177990 ATCCTAAATT
50178000 AATAAAATAAAATAAAA
1 AATAAAATAAAATAAAA
50178017 AATAAAAT-AAATAATAA
1 AATAAAATAAAATAA-AA
** *
50178034 AACCAAATAAAACAAAA
1 AATAAAATAAAATAAAA
50178051 TAATA
1 -AATA
50178056 TCTTCTATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
16 6 0.19
17 18 0.58
18 7 0.23
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (17 bp):
AATAAAATAAAATAAAA
Found at i:50188171 original size:19 final size:19
Alignment explanation
Indices: 50188125--50188172 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
50188115 GTATATATTT
50188125 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
50188143 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
50188162 TAAGTTTTATT
1 TAAATTTTATT
50188173 CATATTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:50188233 original size:37 final size:37
Alignment explanation
Indices: 50188192--50188276 Score: 98
Period size: 42 Copynumber: 2.2 Consensus size: 37
50188182 AGAATATTTT
**
50188192 TATTTTATCTTTTAGTAGTTTATTAGAAGAAGGGAAC
1 TATTTTATAGTTTAGTAGTTTATTAGAAGAAGGGAAC
*
50188229 TATTTTCTTTTATAGTTTAGTAGTTTATTAGAATAAGGGAAC
1 TA-----TTTTATAGTTTAGTAGTTTATTAGAAGAAGGGAAC
50188271 TATTTT
1 TATTTT
50188277 CCCAATTATG
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
37 6 0.15
42 34 0.85
ACGTcount: A:0.31, C:0.05, G:0.16, T:0.48
Consensus pattern (37 bp):
TATTTTATAGTTTAGTAGTTTATTAGAAGAAGGGAAC
Found at i:50189610 original size:10 final size:10
Alignment explanation
Indices: 50189597--50189658 Score: 53
Period size: 10 Copynumber: 6.6 Consensus size: 10
50189587 TTAAATTTTA
50189597 ATAAAAAATT
1 ATAAAAAATT
50189607 AT-AAAAATT
1 ATAAAAAATT
50189616 AT--AAAATT
1 ATAAAAAATT
*
50189624 ATATAAAATT
1 ATAAAAAATT
*
50189634 GT-AAAAA-T
1 ATAAAAAATT
*
50189642 ATATAGAAATT
1 ATA-AAAAATT
50189653 ATAAAA
1 ATAAAA
50189659 TTTTATAAAG
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
8 10 0.24
9 13 0.31
10 15 0.36
11 4 0.10
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (10 bp):
ATAAAAAATT
Found at i:50189614 original size:9 final size:9
Alignment explanation
Indices: 50189600--50189731 Score: 76
Period size: 9 Copynumber: 14.0 Consensus size: 9
50189590 AATTTTAATA
50189600 AAAAATTAT
1 AAAAATTAT
50189609 AAAAATTAT
1 AAAAATTAT
50189618 -AAAATTAT
1 AAAAATTAT
*
50189626 ATAAAATTGT
1 A-AAAATTAT
50189636 AAAAATATAT
1 AAAAAT-TAT
*
50189646 AGAAATTAT
1 AAAAATTAT
*
50189655 -AAAATTTT
1 AAAAATTAT
* *
50189663 ATAAAGTAGT
1 AAAAATTA-T
*
50189673 AAGAAAATTTT
1 -A-AAAATTAT
50189684 ACAAAATGTA-
1 A-AAAAT-TAT
50189694 AAAAA-TAT
1 AAAAATTAT
50189702 -AAAATTCAT
1 AAAAATT-AT
50189711 AAAAAATATTAT
1 --AAAA-ATTAT
50189723 AAAAATTAT
1 AAAAATTAT
50189732 CGTACCAAAA
Statistics
Matches: 95, Mismatches: 13, Indels: 30
0.69 0.09 0.22
Matches are distributed among these distances:
7 6 0.06
8 15 0.16
9 32 0.34
10 27 0.28
11 3 0.03
12 9 0.09
13 3 0.03
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:50189664 original size:10 final size:10
Alignment explanation
Indices: 50189589--50189667 Score: 51
Period size: 10 Copynumber: 8.2 Consensus size: 10
50189579 AATATTATTT
50189589 AAATTTTAATA
1 AAATTTT-ATA
**
50189600 AAAAATTATA
1 AAATTTTATA
*
50189610 AAA-ATTATA
1 AAATTTTATA
*
50189619 AAATTATATA
1 AAATTTTATA
*
50189629 AAATTGTA-A
1 AAATTTTATA
*
50189638 AAA-TATATA
1 AAATTTTATA
50189647 GAAA--TTATA
1 -AAATTTTATA
50189656 AAATTTTATA
1 AAATTTTATA
50189666 AA
1 AA
50189668 GTAGTAAGAA
Statistics
Matches: 56, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
8 6 0.11
9 18 0.32
10 27 0.48
11 5 0.09
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (10 bp):
AAATTTTATA
Found at i:50189949 original size:19 final size:19
Alignment explanation
Indices: 50189927--50189994 Score: 61
Period size: 20 Copynumber: 3.7 Consensus size: 19
50189917 TTAATAAATT
50189927 TTAAATTTTTATATTTTTA
1 TTAAATTTTTATATTTTTA
* * *
50189946 TTAAAATTTAATAATTTTTC
1 TTAAATTTTTAT-ATTTTTA
* *
50189966 TAAAATTTAT-TATTTTTA
1 TTAAATTTTTATATTTTTA
50189984 -T-AATTTTTATA
1 TTAAATTTTTATA
50189995 ATTTCTAATA
Statistics
Matches: 37, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
16 6 0.16
17 2 0.05
18 6 0.16
19 11 0.30
20 12 0.32
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (19 bp):
TTAAATTTTTATATTTTTA
Found at i:50189955 original size:18 final size:18
Alignment explanation
Indices: 50189934--50189984 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 18
50189924 ATTTTAAATT
50189934 TTTATATTTTTATTAAAA
1 TTTATATTTTTATTAAAA
*
50189952 TTTAATAATTTTT-CTAAAA
1 TTT-AT-ATTTTTATTAAAA
50189971 TTTATTATTTTTAT
1 TTTA-TATTTTTAT
50189985 AATTTTTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
18 10 0.37
19 11 0.41
20 6 0.22
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTATATTTTTATTAAAA
Found at i:50189961 original size:46 final size:46
Alignment explanation
Indices: 50189861--50189993 Score: 126
Period size: 47 Copynumber: 2.8 Consensus size: 46
50189851 GTTAATATTT
* * * *
50189861 TTATGATTCTTATAAAATTTTATTTTTTTATGATTTTTATGAAAAAA
1 TTATAATTTTTAT-AAATTTTATATTTTTATAATTTTTATGAAAAAA
* * * *
50189908 TTCTAATTTTTAATAAATTTTAAATTTTTAT-ATTTTTAT-TAAAAT
1 TTATAATTTTT-ATAAATTTTATATTTTTATAATTTTTATGAAAAAA
* *
50189953 TTAATAATTTTTCTAAAATTTATTATTTTTATAATTTTTAT
1 TT-ATAATTTTTATAAATTTTA-TATTTTTATAATTTTTAT
50189994 AATTTCTAAT
Statistics
Matches: 71, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
45 14 0.20
46 24 0.34
47 31 0.44
48 2 0.03
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.59
Consensus pattern (46 bp):
TTATAATTTTTATAAATTTTATATTTTTATAATTTTTATGAAAAAA
Found at i:50189989 original size:9 final size:9
Alignment explanation
Indices: 50189911--50189998 Score: 72
Period size: 9 Copynumber: 9.7 Consensus size: 9
50189901 GAAAAAATTC
50189911 TAATTTTTAA
1 TAATTTTT-A
*
50189921 TAAATTTTA
1 TAATTTTTA
50189930 -AATTTTTA
1 TAATTTTTA
50189938 T-ATTTTTA
1 TAATTTTTA
* *
50189946 TTAAAATTTAA
1 -T-AATTTTTA
*
50189957 TAATTTTTC
1 TAATTTTTA
**
50189966 TAAAATTTA
1 TAATTTTTA
*
50189975 TTATTTTTA
1 TAATTTTTA
50189984 TAATTTTTA
1 TAATTTTTA
50189993 TAATTT
1 TAATTT
50189999 CTAATAAGAG
Statistics
Matches: 60, Mismatches: 14, Indels: 9
0.72 0.17 0.11
Matches are distributed among these distances:
8 14 0.23
9 33 0.55
10 8 0.13
11 5 0.08
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (9 bp):
TAATTTTTA
Found at i:50190201 original size:87 final size:86
Alignment explanation
Indices: 50190015--50190202 Score: 243
Period size: 86 Copynumber: 2.2 Consensus size: 86
50190005 AGAGCATGAA
*
50190015 CTTAATTGCTTTTTTGAAAAAATTTGAGGGTCCTTTTAATGCATTTTGAAAGTTCAAGTACCCAA
1 CTTAATTGCTTTTTTGAAAAAATTTGAGGGTCCTTTTAATGCATTTCGAAAGTTCAAGTACCCAA
*
50190080 TTGAGTGAAAAAAAAGTAGGG
66 TTGAGTGAAAAAAAAGAAGGG
* * * * ** * **
50190101 CTTAATTGTTTTTTTGAAGAAGA-TTGAGGGTCTTTTTTATGCATTTCGAAAGTTTGAGTGCTTA
1 CTTAATTGCTTTTTTGAA-AAAATTTGAGGGTCCTTTTAATGCATTTCGAAAGTTCAAGTACCCA
*
50190165 ATTGAGTGTAAAAAAATGAAGGG
65 ATTGAGTG-AAAAAAAAGAAGGG
50190188 CTTAATTGCTTTTTT
1 CTTAATTGCTTTTTT
50190203 TTTAAAAAAA
Statistics
Matches: 87, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
86 58 0.67
87 29 0.33
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (86 bp):
CTTAATTGCTTTTTTGAAAAAATTTGAGGGTCCTTTTAATGCATTTCGAAAGTTCAAGTACCCAA
TTGAGTGAAAAAAAAGAAGGG
Found at i:50196585 original size:12 final size:12
Alignment explanation
Indices: 50196568--50196593 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
50196558 ATAAGAAAGT
50196568 TGAATCAGTGCC
1 TGAATCAGTGCC
50196580 TGAATCAGTGCC
1 TGAATCAGTGCC
50196592 TG
1 TG
50196594 TTGTTTGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (12 bp):
TGAATCAGTGCC
Found at i:50201396 original size:40 final size:40
Alignment explanation
Indices: 50201301--50201518 Score: 284
Period size: 40 Copynumber: 5.5 Consensus size: 40
50201291 TGGATGATAA
*
50201301 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
50201342 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
50201382 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
50201422 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
50201462 CCGGGCTATGTCCCGAAAGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
50201501 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
50201519 TACTTGGCTT
Statistics
Matches: 160, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
38 14 0.09
39 15 0.09
40 103 0.64
41 24 0.15
42 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:50204155 original size:42 final size:42
Alignment explanation
Indices: 50204048--50204188 Score: 115
Period size: 43 Copynumber: 3.3 Consensus size: 42
50204038 GTTTGTGACA
* ** * * *
50204048 TCGTGTAAGACCGTGTCTAGGACACAGGCCTCGAT-TGAGATT
1 TCGTGTAAGACCATGTCCGGGACAGAGGCATCGATAT-TGATT
* * **
50204090 TACGTATAAGACCATGTCTGGGACATTGGCATCG-TATCTGATT
1 T-CGTGTAAGACCATGTCCGGGACAGAGGCATCGATAT-TGATT
* *
50204133 TCGTGTAAGACCCTGTCCGGGACAGAGGCATCGATATTGAAT
1 TCGTGTAAGACCATGTCCGGGACAGAGGCATCGATATTGATT
*
50204175 TAGATGTAAGACCA
1 TCG-TGTAAGACCA
50204189 CGCCTGGGAC
Statistics
Matches: 79, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
42 35 0.44
43 44 0.56
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCCGGGACAGAGGCATCGATATTGATT
Found at i:50204198 original size:43 final size:42
Alignment explanation
Indices: 50204096--50204198 Score: 95
Period size: 42 Copynumber: 2.4 Consensus size: 42
50204086 GATTTACGTA
* * ** * *
50204096 TAAGACCATGTCTGGGACATTGGCATCGTATCTGATTTCGTG
1 TAAGACCACGCCTGGGACAGAGGCATCGTATCTGAATTAGTG
50204138 TAAGACC-CTGTCC-GGGACAGAGGCATCGATAT-TGAATTAGATG
1 TAAGACCAC-G-CCTGGGACAGAGGCATCG-TATCTGAATTAG-TG
50204181 TAAGACCACGCCTGGGAC
1 TAAGACCACGCCTGGGAC
50204199 GTCGGCATTG
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
42 29 0.59
43 19 0.39
44 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (42 bp):
TAAGACCACGCCTGGGACAGAGGCATCGTATCTGAATTAGTG
Found at i:50207472 original size:24 final size:24
Alignment explanation
Indices: 50207445--50207493 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
50207435 TATTTACTAG
50207445 ATTACCAAAATGCCCTTCACTTAA
1 ATTACCAAAATGCCCTTCACTTAA
50207469 ATTACCAAAATGCCCTTCACTTAA
1 ATTACCAAAATGCCCTTCACTTAA
50207493 A
1 A
50207494 CTTTGAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.39, C:0.29, G:0.04, T:0.29
Consensus pattern (24 bp):
ATTACCAAAATGCCCTTCACTTAA
Found at i:50217040 original size:40 final size:39
Alignment explanation
Indices: 50216996--50217178 Score: 258
Period size: 40 Copynumber: 4.6 Consensus size: 39
50216986 GCCACTAGCT
* * *
50216996 CAAATGCCTTCGGGACTTAGCCCTGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATATAATAACTCGCA
*
50217036 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATATAATAACTCGCA
*
50217075 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATATAATAACTCGCA
* * *
50217115 CAAACGCCTTCGGGACTTAGCCCAGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATATAATAACTCGCA
*
50217155 CGAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
50217179 GAATTAGCCA
Statistics
Matches: 132, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 37 0.28
40 95 0.72
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGATATAATAACTCGCA
Found at i:50217201 original size:40 final size:39
Alignment explanation
Indices: 50216996--50217219 Score: 249
Period size: 40 Copynumber: 5.6 Consensus size: 39
50216986 GCCACTAGCT
* * *
50216996 CAAATGCCTTCGGGACTTAGCCCTGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAG-AACTCGCA
*
50217036 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATAT-AGAACTCGCA
50217075 CAAATGCCTTCGGGACTTAGCCCGGATATA-ATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGA-A-CTCGCA
* * *
50217115 CAAACGCCTTCGGGACTTAGCCCAGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAG-AACTCGCA
* * * *
50217155 CGAATGCCTTCGGGACTTAGCCCGGA-ATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAG-AACTCGCA
50217195 CAAATG-CTCTCGGGACTTAGCCCGG
1 CAAATGCCT-TCGGGACTTAGCCCGG
50217220 TTATCATCCG
Statistics
Matches: 161, Mismatches: 15, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
38 1 0.01
39 40 0.25
40 119 0.74
42 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGAACTCGCA
Found at i:50230252 original size:194 final size:194
Alignment explanation
Indices: 50229923--50230309 Score: 704
Period size: 194 Copynumber: 2.0 Consensus size: 194
50229913 CTCTCTGTGC
*
50229923 ACCCTTAGTTTAGTTAATTAGTTTAGATAAACAAATCCCTTAATTTTTAGGCTAGATAATAAAAA
1 ACCCTTAGTTTAGTTAATTAGTTTAGATAAAAAAATCCCTTAATTTTTAGGCTAGATAATAAAAA
* *
50229988 AAAGTAATTACTAGTACTATTGGTTCCTTTGGGTTCGACAATCTGGTCTTGCTAAAGCTATATTA
66 AAAGTAATTACGAGTACTATTGGTTCCTTTGGGTTCGACAATCTGGTCTTGCTAAAGCTATACTA
50230053 CTGTTCGATAGGTACACTTGCCTTCATCGTGATAATAGTTAGTTTCAAGAACGATTAGTTATAG
131 CTGTTCGATAGGTACACTTGCCTTCATCGTGATAATAGTTAGTTTCAAGAACGATTAGTTATAG
50230117 ACCCTTAGTTTAGTTAATTAGTTTAGATAAAAAAATCCCTTAATTTTTAGGCTAGATAATAAAAA
1 ACCCTTAGTTTAGTTAATTAGTTTAGATAAAAAAATCCCTTAATTTTTAGGCTAGATAATAAAAA
* *
50230182 GAAAGTAATTACGAGTACTCTTGGTTCTTTTGGGTTCGACAATCTGGTCTTGCT-AAGCTATACT
66 -AAAGTAATTACGAGTACTATTGGTTCCTTTGGGTTCGACAATCTGGTCTTGCTAAAGCTATACT
*
50230246 ACTGTTCGATAGGTACACTTGCCTTCATTGTGATAATAGTTAGTTTCAAGAACGATTAGTTATA
130 ACTGTTCGATAGGTACACTTGCCTTCATCGTGATAATAGTTAGTTTCAAGAACGATTAGTTATA
50230310 AATTTTTAAA
Statistics
Matches: 186, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
194 136 0.73
195 50 0.27
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (194 bp):
ACCCTTAGTTTAGTTAATTAGTTTAGATAAAAAAATCCCTTAATTTTTAGGCTAGATAATAAAAA
AAAGTAATTACGAGTACTATTGGTTCCTTTGGGTTCGACAATCTGGTCTTGCTAAAGCTATACTA
CTGTTCGATAGGTACACTTGCCTTCATCGTGATAATAGTTAGTTTCAAGAACGATTAGTTATAG
Found at i:50236402 original size:40 final size:39
Alignment explanation
Indices: 50236358--50236462 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
50236348 AGTGACCATA
*
50236358 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
50236398 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
50236436 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
50236463 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:50236419 original size:39 final size:40
Alignment explanation
Indices: 50236318--50236481 Score: 169
Period size: 40 Copynumber: 4.1 Consensus size: 40
50236308 TTGAATGATG
* *
50236318 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATA
*
50236358 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA
*
50236397 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* * **
50236437 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATA-CTATA
50236477 TCCGG
1 TCCGG
50236482 TTAAATTCCA
Statistics
Matches: 106, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
39 36 0.34
40 59 0.56
41 10 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
Found at i:50236481 original size:79 final size:80
Alignment explanation
Indices: 50236318--50236468 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 80
50236308 TTGAATGATG
*
50236318 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
50236383 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * *
50236398 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
50236460 TTGAACGAG
64 TTGAACGAG
50236469 TAGCTATATC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.69
80 18 0.30
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:50247272 original size:57 final size:56
Alignment explanation
Indices: 50247203--50247318 Score: 214
Period size: 57 Copynumber: 2.0 Consensus size: 56
50247193 ACCACAAATT
50247203 CAAAAAAAAAAAAAAAAACTCAAACCTCTTATACTTTCATCATTAAAGCTATACTCG
1 CAAAAAAAAAAAAAAAAACTCAAA-CTCTTATACTTTCATCATTAAAGCTATACTCG
50247260 CAAAAAAAAAAAAAAAAAACTCAAACTCTTATACTTTCATCATTAAAGCTATACTCG
1 C-AAAAAAAAAAAAAAAAACTCAAACTCTTATACTTTCATCATTAAAGCTATACTCG
50247317 CA
1 CA
50247319 TTACCGTTTC
Statistics
Matches: 58, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
56 1 0.02
57 34 0.59
58 23 0.40
ACGTcount: A:0.52, C:0.21, G:0.03, T:0.24
Consensus pattern (56 bp):
CAAAAAAAAAAAAAAAAACTCAAACTCTTATACTTTCATCATTAAAGCTATACTCG
Found at i:50247608 original size:24 final size:24
Alignment explanation
Indices: 50247579--50247642 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
50247569 TTTCTAGAAG
* * *
50247579 ATTTAATATTTATTAGTATAATGT
1 ATTTAACATTTATTAGCATAATAT
50247603 ATTTAACATTTATTAGCATAATAT
1 ATTTAACATTTATTAGCATAATAT
* *
50247627 ATTTGACATTGATTAG
1 ATTTAACATTTATTAG
50247643 AATTAGTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.38, C:0.05, G:0.09, T:0.48
Consensus pattern (24 bp):
ATTTAACATTTATTAGCATAATAT
Found at i:50251422 original size:24 final size:24
Alignment explanation
Indices: 50251371--50251423 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
50251361 TTTATTATTT
* * *
50251371 ATTAGTATGATATATTTAGCATTT
1 ATTAGCATAATATATTTAGCATTG
50251395 ATTAGCATAATATATTT-GACATTG
1 ATTAGCATAATATATTTAG-CATTG
50251419 ATTAG
1 ATTAG
50251424 AATTAGGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.04
24 24 0.96
ACGTcount: A:0.36, C:0.06, G:0.13, T:0.45
Consensus pattern (24 bp):
ATTAGCATAATATATTTAGCATTG
Found at i:50252905 original size:29 final size:30
Alignment explanation
Indices: 50252863--50252923 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 30
50252853 TATTAGATAT
*
50252863 CACATTGAACATTT-TCAAAGTATAGGTAC
1 CACATTGAACATTTATCAAAGTAAAGGTAC
** * *
50252892 CACATTGGGCATTTATGAAAGTAAATGTAC
1 CACATTGAACATTTATCAAAGTAAAGGTAC
50252922 CA
1 CA
50252924 AATAATAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (30 bp):
CACATTGAACATTTATCAAAGTAAAGGTAC
Found at i:50262084 original size:15 final size:16
Alignment explanation
Indices: 50262059--50262101 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
50262049 TCCTCTCCTA
*
50262059 TCTTCTTTCTTCT-TT
1 TCTTCTCTCTTCTATT
*
50262074 TCTTTTCTCTT-TATT
1 TCTTCTCTCTTCTATT
50262089 TCTTCTCTCTTCT
1 TCTTCTCTCTTCT
50262102 CCCTTGCGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 1 0.04
15 21 0.91
16 1 0.04
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.70
Consensus pattern (16 bp):
TCTTCTCTCTTCTATT
Found at i:50263940 original size:6 final size:6
Alignment explanation
Indices: 50263929--50263973 Score: 67
Period size: 6 Copynumber: 7.8 Consensus size: 6
50263919 TTCATTTCTC
*
50263929 TTTATA TTTATA TTTATA TTTATA TTTATA TTT-T- TTTATG TTTAT
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTAT
50263974 TTTGTTTTCC
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
4 3 0.08
5 2 0.05
6 32 0.86
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (6 bp):
TTTATA
Found at i:50264861 original size:15 final size:16
Alignment explanation
Indices: 50264835--50264864 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
50264825 CTGAGAATTT
50264835 TCCCTATTTTATTGAC
1 TCCCTATTTTATTGAC
50264851 TCCCT-TTTTATTGA
1 TCCCTATTTTATTGA
50264865 GATTTGATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.17, C:0.23, G:0.07, T:0.53
Consensus pattern (16 bp):
TCCCTATTTTATTGAC
Found at i:50264988 original size:9 final size:8
Alignment explanation
Indices: 50264957--50264987 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
50264947 AGTGAAGTGA
50264957 AAAAAAAG
1 AAAAAAAG
50264965 AAAAAAAG
1 AAAAAAAG
50264973 AAAAAAAG
1 AAAAAAAG
50264981 AAAAAAA
1 AAAAAAA
50264988 ATATTTACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:50267599 original size:25 final size:25
Alignment explanation
Indices: 50267571--50267653 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
50267561 GTCCCTCGTA
50267571 AAGCCTCTGTGGTGATTTATTTGGG
1 AAGCCTCTGTGGTGATTTATTTGGG
* * *** ***
50267596 AAGCCTCTGTGGCGAGTCCCTTATA
1 AAGCCTCTGTGGTGATTTATTTGGG
*
50267621 AAGCCTTTGTGGTGATTTATTTGGG
1 AAGCCTCTGTGGTGATTTATTTGGG
50267646 AAGCCTCT
1 AAGCCTCT
50267654 ATGGCGAGTC
Statistics
Matches: 40, Mismatches: 18, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.18, C:0.18, G:0.28, T:0.36
Consensus pattern (25 bp):
AAGCCTCTGTGGTGATTTATTTGGG
Found at i:50267611 original size:50 final size:50
Alignment explanation
Indices: 50267535--50267682 Score: 208
Period size: 50 Copynumber: 3.0 Consensus size: 50
50267525 CTATGTGGCT
* * *
50267535 ATTTATTTGGGAAGCCTTTGTTGCGAGTCCCTCGTAAAGCCTCTGTGGTG
1 ATTTATTTGGGAAGCCTCTGTGGCGAGTCCCTCATAAAGCCTCTGTGGTG
* *
50267585 ATTTATTTGGGAAGCCTCTGTGGCGAGTCCCTTATAAAGCCTTTGTGGTG
1 ATTTATTTGGGAAGCCTCTGTGGCGAGTCCCTCATAAAGCCTCTGTGGTG
* * *
50267635 ATTTATTTGGGAAGCCTCTATGGCGAGTCACCT-ATAAATCCTTTGTGG
1 ATTTATTTGGGAAGCCTCTGTGGCGAGTC-CCTCATAAAGCCTCTGTGG
50267683 CAAGGTGCAT
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
50 87 0.97
51 3 0.03
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.36
Consensus pattern (50 bp):
ATTTATTTGGGAAGCCTCTGTGGCGAGTCCCTCATAAAGCCTCTGTGGTG
Found at i:50270208 original size:3 final size:3
Alignment explanation
Indices: 50270200--50270275 Score: 152
Period size: 3 Copynumber: 25.3 Consensus size: 3
50270190 TCAATGGAAC
50270200 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
50270248 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
50270276 ACGAGATGCT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 73 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:50271124 original size:910 final size:877
Alignment explanation
Indices: 50269428--50271530 Score: 2688
Period size: 877 Copynumber: 2.4 Consensus size: 877
50269418 GTAAAGAAAA
* * * ** *
50269428 GGAGTGAGCTTATAATAGCCCTAAGGCAAGTCTAATTTTTAAACCATTACATATAATTGTTCAAA
1 GGAGTGAGCTTATGACAGCCC-AATGTTAGTTTAATTTTTAAACCATTACATATAATTGTTCAAA
* * * * *
50269493 CGACAAAACATTGAATTTAAAACATCATAGCAAATTAAGCATAATATAAGAGACATTTATTAAAT
65 CGATAAAGCATTCAATTTAAAACATCATAGCAAATTAAGCATACTATAA-AGACATTTAGTAAAT
50269558 CAATGCATGTACAAGTTATGTTCATGATGCAATGCAA-T-T-A---T--ATTCCCACTCATCCAT
129 CAATGCATGTACAAGTTATGTTCATGATGCAATGCAATTATAATTTTAAATTCCCACTCATCCAT
* * * * **
50269615 CCTATTCGCCCTCGAGCATTGCTTGACACTCCAAAACAGATTTCAGTAATTGGCCATCCCAAATT
194 CCTATTCGCCCTCGAGCATCGCTTGACACTCCAAAACACATTTCAGTAACTGACCATCCCGGATT
* *
50269680 TCTCGATTACGA-TGTTCGTTCACTTGTCATCCGTGATGATGACTTTTACTATAATAACTTACCA
259 TCCCGATTACGATTGTT-GTTCACTTGTCATCCGTGATGATGACTTTTACTACAATAACTTACCA
* * * * *
50269744 AATATAACACCCCCGACCAGGATTAAGAGTTTGGACAAAGTCAAAGGTGCTACATTGATCACCGA
323 AATATAAAACCCCCAACCAAGATTAAGAGTTTGAACAAAGTCAAAGGCGCTACATTGATCACCGA
*
50269809 AGTGATCCAGTAAAGCTATTCTTTTGCTTGAGTTGAAATGTATGAAAATCACTCTTTTGTTTTTA
388 AGTGATCCAGTAAAGCCATTCTTTTGCTTGAGTTGAAATGTATGAAAATCACTCTTTTGTTTTTA
*
50269874 AGAAAGACATTCATTAATTAATCCAGCTTTACTTAGTAATCTATCTACAATATTATTAACGTGAA
453 AGAAAGACATTCATTAATTAATCCAGCTTTACTCAGTAATCTATCTACAATATTATTAACGTGAA
*
50269939 GTGTTTTTTGAGAAAAAGATTTATGGTTTTAAAAGACTTATCAAAACTTTAAGTATTTTGCAAAG
518 GTGTTTTTTGAGAAAAAGATTTATGGTTTTAAAAGACTTATCAAAACTTTAAGAATTTTGCAAAG
* *
50270004 TAATGGAAACCAATAATAAGAATAATAGTTTTCTAAACCAATTAGCATGCAATAATTATAGTAAT
583 CAATGGAAACCAATAATAAGAATAATAGTTTTCTAAACCAATTAGCATGCAATAATTAGAGTAAT
* * *
50270069 AACTAAATGACATGCTTAAAAATTGATAAGCTAAATAGTCCAAAACCACAATTATGAAAGCAATA
648 AACTAAAAGACATGCTTAAAAATTGATAAGCTAAATAATCCAAAACCACAATTATCAAAGCAATA
*
50270134 AATAATTAATAGCTTACGACCCAATTAACAAACCAAAAAAATGATTAAGGAAAACTTCAATGGAA
713 AATAATTAAAAGCTTACGACCCAATTAACAAACCAAAAAAATGATTAAGGAAAACTTCAATGGAA
*
50270199 CATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
778 C------ATAATAAT-A-AATAATAA-AA-AATAA-AATAATAAT-ACAA-AAT--TAAT--T--
* * * *
50270264 TAATAATAATAAACGAGATGCTAGTCCGAGGTTCTTTCGATGCTAACCTGAGAGGTAAGAAAAAG
824 CAATAACAAT--ACGAG-TCCTAGTCC-----TC-TACG-T--T-ACCTGAGAGGTAAGAAAAAG
50270329 GC
876 GC
50270331 GGAGTGAGCTTATGACAGCCCAATGTTAGTTTAATTTTTAAACCATTACATATAATTGTTCAAAC
1 GGAGTGAGCTTATGACAGCCCAATGTTAGTTTAATTTTTAAACCATTACATATAATTGTTCAAAC
*
50270396 GATAAAGCATTCAGTTTAAAACATCATAGCAAATTAAGCATACTATAAATGACATTTAGTAAATC
66 GATAAAGCATTCAATTTAAAACATCATAGCAAATTAAGCATACTATAAA-GACATTTAGTAAATC
* *
50270461 AATGCATGTACAAGTTATGTTCATGATGTAATACAATTATAATTTTAAATTCCCACTCATCCATC
130 AATGCATGTACAAGTTATGTTCATGATGCAATGCAATTATAATTTTAAATTCCCACTCATCCATC
* * * * *
50270526 CTATTCACCCTCAAACATCGCTTGATACTCCAAAACACATTTCAGTAACTGACCATCTCGGATTT
195 CTATTCGCCCTCGAGCATCGCTTGACACTCCAAAACACATTTCAGTAACTGACCATCCCGGATTT
*
50270591 CCCGATTACGATTGTTGTTCACTTGTTATCCGTGATGATGACTTTTACTACAATAACTTACCAAA
260 CCCGATTACGATTGTTGTTCACTTGTCATCCGTGATGATGACTTTTACTACAATAACTTACCAAA
* * * * * *
50270656 TGTAAAACCCCCAACCAAGCTTAAGAGTTTTAACTAAGTCAAAGGCGTTACATTGATCACTGAAG
325 TATAAAACCCCCAACCAAGATTAAGAGTTTGAACAAAGTCAAAGGCGCTACATTGATCACCGAAG
* * *
50270721 TGATCTAGTAAAGCCATTCTTTTGCTTGAGTTGAATTGTATGAAAATCACTTTTTTGTTTTTAAG
390 TGATCCAGTAAAGCCATTCTTTTGCTTGAGTTGAAATGTATGAAAATCACTCTTTTGTTTTTAAG
* * *
50270786 AAAGACATTCATTAATTAAT-CTGACTTTACTCAGTAATCTATTTACAATATTATTAATGTGAAG
455 AAAGACATTCATTAATTAATCCAG-CTTTACTCAGTAATCTATCTACAATATTATTAACGTGAAG
* * **
50270850 T-TTTTTTTATAAAGCTG-TTTATGGTTTTAAAAGACTTATCAAAACTTTAAGAATTTTGCAAAG
519 TGTTTTTTGAGAAA-AAGATTTATGGTTTTAAAAGACTTATCAAAACTTTAAGAATTTTGCAAAG
* * * *
50270913 CAGTGGAAATCAATAATAAGATTAATGGTTTTCTAAACCAATTAGCATGCAATAATTAGAGTAAT
583 CAATGGAAACCAATAATAAGAATAATAGTTTTCTAAACCAATTAGCATGCAATAATTAGAGTAAT
* * * * * * *
50270978 AAGTAAAAGTCATGCTTAAAATTTTATAAGCTAAATAATCCCAAACCATAGTTATCAAAGCAATA
648 AACTAAAAGACATGCTTAAAAATTGATAAGCTAAATAATCCAAAACCACAATTATCAAAGCAATA
* * *
50271043 AATAATTAAAAGCTTACGACCCCATTAACAAACCAATAAAATGATTAATGAAAACTTCAATGGAA
713 AATAATTAAAAGCTTACGACCCAATTAACAAACCAAAAAAATGATTAAGGAAAACTTCAATGGAA
* * ** * * * ** ** * ** *
50271108 CATAATAATAAATAATAAAAAATGAGATGCTAGTCCGAGGTTCCTTCGATGCCAATCCGAGTCCT
778 CATAATAATAAATAATAAAAAATAAAATAATAATACAAAATTAATTCAATAACAATACGAGTCCT
* * *
50271173 AGTTCTCTACGTTACCTGAGAGGTAAGATAAAGGG
843 AGTCCTCTACGTTACCTGAGAGGTAAGAAAAAGGC
* * * *
50271208 GGAGTAAGCTTATGTCAGTCCAATGTTAGTTTAATTTTTAAACCATTACATATAATTGTTCAAAT
1 GGAGTGAGCTTATGACAGCCCAATGTTAGTTTAATTTTTAAACCATTACATATAATTGTTCAAAC
* *
50271273 GATAAAGCATTCAATTTAAAACA-CTATAGCAAATTAAGCATACTATAAGGGACATTCAGTAAAT
66 GATAAAGCATTCAATTTAAAACATC-ATAGCAAATTAAGCATACTATAA-AGACATTTAGTAAAT
*
50271337 CAATGCATGTACAAGTTATGTTCATGATGCAATGCAATTATAATTTTAAATTCCCCAC-CACCCA
129 CAATGCATGTACAAGTTATGTTCATGATGCAATGCAATTATAATTTTAAATT-CCCACTCATCCA
* * * * *
50271401 TCCTATTCGCCCTCGAGCATCACTCGACATTCAAAAACACATTTTAGTAACTGACCATCCCGGAT
193 TCCTATTCGCCCTCGAGCATCGCTTGACACTCCAAAACACATTTCAGTAACTGACCATCCCGGAT
* * * ** * * *
50271466 TTCCC-AGTGACAATAGTCATTCACTTGTCATCTGTGACGATGACTTTTACTTCAATAACTTACC
258 TTCCCGA-TTACGATTGTTGTTCACTTGTCATCCGTGATGATGACTTTTACTACAATAACTTACC
50271530 A
322 A
50271531 TCCTAGTTTG
Statistics
Matches: 1060, Mismatches: 124, Indels: 58
0.85 0.10 0.05
Matches are distributed among these distances:
876 2 0.00
877 303 0.29
878 6 0.01
880 1 0.00
881 3 0.00
882 2 0.00
887 7 0.01
888 4 0.00
890 5 0.00
892 1 0.00
894 2 0.00
896 1 0.00
897 1 0.00
898 5 0.00
899 4 0.00
900 2 0.00
901 9 0.01
902 132 0.12
903 28 0.03
904 1 0.00
905 1 0.00
908 1 0.00
909 233 0.22
910 302 0.28
911 4 0.00
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (877 bp):
GGAGTGAGCTTATGACAGCCCAATGTTAGTTTAATTTTTAAACCATTACATATAATTGTTCAAAC
GATAAAGCATTCAATTTAAAACATCATAGCAAATTAAGCATACTATAAAGACATTTAGTAAATCA
ATGCATGTACAAGTTATGTTCATGATGCAATGCAATTATAATTTTAAATTCCCACTCATCCATCC
TATTCGCCCTCGAGCATCGCTTGACACTCCAAAACACATTTCAGTAACTGACCATCCCGGATTTC
CCGATTACGATTGTTGTTCACTTGTCATCCGTGATGATGACTTTTACTACAATAACTTACCAAAT
ATAAAACCCCCAACCAAGATTAAGAGTTTGAACAAAGTCAAAGGCGCTACATTGATCACCGAAGT
GATCCAGTAAAGCCATTCTTTTGCTTGAGTTGAAATGTATGAAAATCACTCTTTTGTTTTTAAGA
AAGACATTCATTAATTAATCCAGCTTTACTCAGTAATCTATCTACAATATTATTAACGTGAAGTG
TTTTTTGAGAAAAAGATTTATGGTTTTAAAAGACTTATCAAAACTTTAAGAATTTTGCAAAGCAA
TGGAAACCAATAATAAGAATAATAGTTTTCTAAACCAATTAGCATGCAATAATTAGAGTAATAAC
TAAAAGACATGCTTAAAAATTGATAAGCTAAATAATCCAAAACCACAATTATCAAAGCAATAAAT
AATTAAAAGCTTACGACCCAATTAACAAACCAAAAAAATGATTAAGGAAAACTTCAATGGAACAT
AATAATAAATAATAAAAAATAAAATAATAATACAAAATTAATTCAATAACAATACGAGTCCTAGT
CCTCTACGTTACCTGAGAGGTAAGAAAAAGGC
Found at i:50271964 original size:15 final size:14
Alignment explanation
Indices: 50271927--50271973 Score: 60
Period size: 15 Copynumber: 3.3 Consensus size: 14
50271917 CGCATTTAAG
50271927 GTTTGCACATACAG-
1 GTTT-CACATACAGA
*
50271941 GTTTCACATAGAGA
1 GTTTCACATACAGA
50271955 GTTCTCACATACAGA
1 GTT-TCACATACAGA
50271970 GTTT
1 GTTT
50271974 GCATGTAGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 8 0.28
14 8 0.28
15 13 0.45
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (14 bp):
GTTTCACATACAGA
Found at i:50272007 original size:41 final size:42
Alignment explanation
Indices: 50271955--50272045 Score: 130
Period size: 41 Copynumber: 2.2 Consensus size: 42
50271945 CACATAGAGA
* *
50271955 GTTCTCACATACAGAGTTTGCATGTAGGGTTTG-CATATAAG
1 GTTCACACATACAAAGTTTGCATGTAGGGTTTGACATATAAG
* *
50271996 GTTCACACATACAAAGTTTGCATGTAGTGTTTGCACATATAGG
1 GTTCACACATACAAAGTTTGCATGTAGGGTTTG-ACATATAAG
50272039 GTTCACA
1 GTTCACA
50272046 TATAAGGTTC
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 30 0.68
43 14 0.32
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (42 bp):
GTTCACACATACAAAGTTTGCATGTAGGGTTTGACATATAAG
Found at i:50272078 original size:24 final size:24
Alignment explanation
Indices: 50272041--50272218 Score: 105
Period size: 24 Copynumber: 7.5 Consensus size: 24
50272031 CATATAGGGT
*
50272041 TCACATATAAGGTTCGCATACTAAA
1 TCACATA-AGGGTTCGCATACTAAA
* * * *
50272066 TCACTTGAGGGTTAGCATAATAAA
1 TCACATAAGGGTTCGCATACTAAA
* *
50272090 TCACATAAAGGTTCACATA-TATAA
1 TCACATAAGGGTTCGCATACTA-AA
** ** * *
50272114 TCGTATGGGGGTTCGTATATTAAA
1 TCACATAAGGGTTCGCATACTAAA
50272138 TC-CATAAGGGTTCGCATACTAAA
1 TCACATAAGGGTTCGCATACTAAA
* * * *
50272161 TCATATTAGGGTTTGCATATTAAA
1 TCACATAAGGGTTCGCATACTAAA
**
50272185 --ACATATAGGGTTTTTCATACTAAA
1 TCACATA-AGGG-TTCGCATACTAAA
*
50272209 TC-TATAAGGG
1 TCACATAAGGG
50272219 CTTGATTATA
Statistics
Matches: 115, Mismatches: 31, Indels: 15
0.71 0.19 0.09
Matches are distributed among these distances:
22 3 0.03
23 24 0.21
24 78 0.68
25 10 0.09
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (24 bp):
TCACATAAGGGTTCGCATACTAAA
Found at i:50272173 original size:47 final size:47
Alignment explanation
Indices: 50272047--50272218 Score: 147
Period size: 47 Copynumber: 3.7 Consensus size: 47
50272037 GGGTTCACAT
*
50272047 ATAA-GGTTCGCATACTAAATCACT-TGAGGGTTAGCATAATAAATCAC
1 ATAAGGGTTCGCATACTAAATCA-TATGAGGGTTAGCATATTAAATC-C
* * * * * *
50272094 ATAAAGGTTCACATA-TATAATCGTATGGGGGTTCGTATATTAAATCC
1 ATAAGGGTTCGCATACTA-AATCATATGAGGGTTAGCATATTAAATCC
* * *
50272141 ATAAGGGTTCGCATACTAAATCATATTAGGGTTTGCATATTAAA-AC
1 ATAAGGGTTCGCATACTAAATCATATGAGGGTTAGCATATTAAATCC
** *
50272187 ATATAGGGTTTTTCATACTAAATC-TATAAGGG
1 ATA-AGGG-TTCGCATACTAAATCATATGAGGG
50272219 CTTGATTATA
Statistics
Matches: 102, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
46 4 0.04
47 53 0.52
48 45 0.44
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (47 bp):
ATAAGGGTTCGCATACTAAATCATATGAGGGTTAGCATATTAAATCC
Found at i:50272264 original size:58 final size:58
Alignment explanation
Indices: 50272200--50272395 Score: 195
Period size: 58 Copynumber: 3.4 Consensus size: 58
50272190 TAGGGTTTTT
** *
50272200 CATACTAAATC-TATAAGGGCTTGATTATAGGGTTCACATAATATATAATAAGAGATCA
1 CATACTAAATCATATAAGGG-TTGATTATAGGGTTCACATAATATATGGTAAGAGATCG
* * *
50272258 CATACTAAGTCATATAAGGGTTTGCA-TAT-GAGTTCGA-ATAATATATGGTAAAAGATCG
1 CATACTAAATCATATAAGGG-TTG-ATTATAGGGTTC-ACATAATATATGGTAAGAGATCG
* * * ** *
50272316 CATACTAAATCATATAAAGGTT-TTTGTATGGGTTTGCATAATATATGGTATGAGATCG
1 CATACTAAATCATATAAGGGTTGATTATA-GGGTTCACATAATATATGGTAAGAGATCG
*
50272374 CATACTAAATCATATAAAGGTT
1 CATACTAAATCATATAAGGGTT
50272396 TTCATATGGG
Statistics
Matches: 115, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
56 2 0.02
57 2 0.02
58 95 0.83
59 15 0.13
60 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.33
Consensus pattern (58 bp):
CATACTAAATCATATAAGGGTTGATTATAGGGTTCACATAATATATGGTAAGAGATCG
Found at i:50272396 original size:58 final size:58
Alignment explanation
Indices: 50272236--50272419 Score: 251
Period size: 58 Copynumber: 3.2 Consensus size: 58
50272226 ATAGGGTTCA
** * * * * * *
50272236 CATAATATATAATAAGAGATCACATACTAAGTCATATAAGGGTTTGCATATGAGTTCG
1 CATAATATATGGTAAGAGATCGCATACTAAATCATATAAAGGTTTTCATATGGGTTTG
* * **
50272294 AATAATATATGGTAAAAGATCGCATACTAAATCATATAAAGGTTTTTGTATGGGTTTG
1 CATAATATATGGTAAGAGATCGCATACTAAATCATATAAAGGTTTTCATATGGGTTTG
*
50272352 CATAATATATGGTATGAGATCGCATACTAAATCATATAAAGGTTTTCATATGGGTTTG
1 CATAATATATGGTAAGAGATCGCATACTAAATCATATAAAGGTTTTCATATGGGTTTG
50272410 CATAATATAT
1 CATAATATAT
50272420 AGGGTTCACA
Statistics
Matches: 109, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
58 109 1.00
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (58 bp):
CATAATATATGGTAAGAGATCGCATACTAAATCATATAAAGGTTTTCATATGGGTTTG
Found at i:50272457 original size:18 final size:18
Alignment explanation
Indices: 50272410--50272444 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
50272400 TATGGGTTTG
50272410 CATAATATATAGGGTTCA
1 CATAATATATAGGGTTCA
*
50272428 CATAAGATATAGGGTTC
1 CATAATATATAGGGTTC
50272445 GTATTATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (18 bp):
CATAATATATAGGGTTCA
Found at i:50274980 original size:20 final size:21
Alignment explanation
Indices: 50274955--50274994 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
50274945 TGTGATAAAT
50274955 ATTATAAA-TAATAAAAAACC
1 ATTATAAATTAATAAAAAACC
50274975 ATTATAAATTTAATAAAAAA
1 ATTATAAA-TTAATAAAAAA
50274995 AGTATTATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
22 10 0.56
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (21 bp):
ATTATAAATTAATAAAAAACC
Found at i:50275639 original size:17 final size:19
Alignment explanation
Indices: 50275603--50275640 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
50275593 AATTAAAAAG
*
50275603 TTTAATATATATATAGTTT
1 TTTAAAATATATATAGTTT
50275622 TTTAAAATAT-TATA-TTT
1 TTTAAAATATATATAGTTT
50275639 TT
1 TT
50275641 ATCATTTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 4 0.22
19 9 0.50
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (19 bp):
TTTAAAATATATATAGTTT
Found at i:50275884 original size:22 final size:22
Alignment explanation
Indices: 50275843--50275884 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
50275833 GTAACGGATC
*
50275843 GATTTTTAATACTTTTTTTATA
1 GATTTTTAATACTTTATTTATA
**
50275865 GATTTTTAATGGTTTATTTA
1 GATTTTTAATACTTTATTTA
50275885 ATTGAGTTAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.26, C:0.02, G:0.10, T:0.62
Consensus pattern (22 bp):
GATTTTTAATACTTTATTTATA
Found at i:50276620 original size:53 final size:53
Alignment explanation
Indices: 50276563--50276679 Score: 218
Period size: 53 Copynumber: 2.2 Consensus size: 53
50276553 CCGAATTAAC
50276563 AATGAAAATTAAAATTATGCACACAGAATATATATTTATACACAATCTAATAT
1 AATGAAAATTAAAATTATGCACACAGAATATATATTTATACACAATCTAATAT
50276616 AATGAAAATTAAAATTATGCACACAGAATATATATTTATACACAATCTAATAT
1 AATGAAAATTAAAATTATGCACACAGAATATATATTTATACACAATCTAATAT
*
50276669 -ATGAACATTAA
1 AATGAAAATTAA
50276680 TGGCTATAAG
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
52 10 0.16
53 53 0.84
ACGTcount: A:0.51, C:0.11, G:0.06, T:0.32
Consensus pattern (53 bp):
AATGAAAATTAAAATTATGCACACAGAATATATATTTATACACAATCTAATAT
Found at i:50281705 original size:3 final size:3
Alignment explanation
Indices: 50281697--50281721 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
50281687 TACCTAACTT
50281697 ACC ACC ACC ACC ACC ACC ACC ACC A
1 ACC ACC ACC ACC ACC ACC ACC ACC A
50281722 TAACTACTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.64, G:0.00, T:0.00
Consensus pattern (3 bp):
ACC
Found at i:50285838 original size:25 final size:27
Alignment explanation
Indices: 50285801--50285853 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
50285791 TCAAACATGC
50285801 ATTTAGGTCAATTTAACT-CTAGGGGT
1 ATTTAGGTCAATTTAACTACTAGGGGT
* *
50285827 ATTTCGGT-AATTTATCTACTAGGGGT
1 ATTTAGGTCAATTTAACTACTAGGGGT
50285853 A
1 A
50285854 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTACTAGGGGT
Found at i:50287365 original size:26 final size:26
Alignment explanation
Indices: 50287329--50287395 Score: 107
Period size: 26 Copynumber: 2.6 Consensus size: 26
50287319 TACAAAAGAC
*
50287329 CCTAACCCATTATCATTCAACATTTA
1 CCTAACCCATTATCATGCAACATTTA
* *
50287355 CCTAAACCATTATCATGGAACATTTA
1 CCTAACCCATTATCATGCAACATTTA
50287381 CCTAACCCATTATCA
1 CCTAACCCATTATCA
50287396 ATTTGTATCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.36, C:0.30, G:0.03, T:0.31
Consensus pattern (26 bp):
CCTAACCCATTATCATGCAACATTTA
Found at i:50289013 original size:48 final size:48
Alignment explanation
Indices: 50288942--50289040 Score: 153
Period size: 48 Copynumber: 2.1 Consensus size: 48
50288932 GCTTAAGTCA
* * *
50288942 AGGCCACCAATACAGTTCTCGCAAGTCATGGTACAACTTATTCTCTCC
1 AGGCCACCAATACAATTCTCGCAAGTCATGATACAACTTATTCCCTCC
* *
50288990 AGGCCACCAGTACAATTCTCGCAAGTCGTGATACAACTTATTCCCTCC
1 AGGCCACCAATACAATTCTCGCAAGTCATGATACAACTTATTCCCTCC
50289038 AGG
1 AGG
50289041 ATGCATGGCA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (48 bp):
AGGCCACCAATACAATTCTCGCAAGTCATGATACAACTTATTCCCTCC
Found at i:50292946 original size:25 final size:27
Alignment explanation
Indices: 50292909--50292961 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
50292899 TCAAACATAC
50292909 ATTTAGGTCAATTTAACT-CTAGGGGT
1 ATTTAGGTCAATTTAACTACTAGGGGT
* *
50292935 ATTTCGGT-AATTTATCTACTAGGGGT
1 ATTTAGGTCAATTTAACTACTAGGGGT
50292961 A
1 A
50292962 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTACTAGGGGT
Found at i:50294480 original size:26 final size:26
Alignment explanation
Indices: 50294450--50294531 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
50294440 TGAAATTCCC
50294450 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
50294476 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
50294502 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
50294528 ATCA
1 ATCA
50294532 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:50301624 original size:114 final size:114
Alignment explanation
Indices: 50301424--50301652 Score: 449
Period size: 114 Copynumber: 2.0 Consensus size: 114
50301414 TATAATTATC
50301424 AATACAAAATCAGGATTAATCTTAAACTTTATTCTTGATTCATTATTCATGTTTATCTTTTTAAC
1 AATACAAAATCAGGATTAATCTTAAACTTTATTCTTGATTCATTATTCATGTTTATCTTTTTAAC
50301489 CAAGTTTATGTTGTTTATGAGATCCATGAGGAACTAATCTCCTTATGGG
66 CAAGTTTATGTTGTTTATGAGATCCATGAGGAACTAATCTCCTTATGGG
*
50301538 AATACAAAATCAGGATTAGTCTTAAACTTTATTCTTGATTCATTATTCATGTTTATCTTTTTAAC
1 AATACAAAATCAGGATTAATCTTAAACTTTATTCTTGATTCATTATTCATGTTTATCTTTTTAAC
50301603 CAAGTTTATGTTGTTTATGAGATCCATGAGGAACTAATCTCCTTATGGG
66 CAAGTTTATGTTGTTTATGAGATCCATGAGGAACTAATCTCCTTATGGG
50301652 A
1 A
50301653 GATTAACGAG
Statistics
Matches: 114, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 114 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.42
Consensus pattern (114 bp):
AATACAAAATCAGGATTAATCTTAAACTTTATTCTTGATTCATTATTCATGTTTATCTTTTTAAC
CAAGTTTATGTTGTTTATGAGATCCATGAGGAACTAATCTCCTTATGGG
Found at i:50302398 original size:19 final size:20
Alignment explanation
Indices: 50302371--50302410 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
50302361 GTAAATACAC
* *
50302371 ATATGTTTATAAT-TGATCA
1 ATATATTTAAAATATGATCA
50302390 ATATATTTAAAATATGATCA
1 ATATATTTAAAATATGATCA
50302410 A
1 A
50302411 CATCAAATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.42
Consensus pattern (20 bp):
ATATATTTAAAATATGATCA
Found at i:50304437 original size:25 final size:24
Alignment explanation
Indices: 50304390--50304438 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
50304380 TAATATTGTC
*
50304390 GGATACATAGATAAAAAAGTTCAT
1 GGATACATAGATAAAAAAATTCAT
50304414 GGATACATAGATAAAAAAAATTCAT
1 GGATACATAGAT-AAAAAAATTCAT
50304439 AAAATATAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.53, C:0.08, G:0.14, T:0.24
Consensus pattern (24 bp):
GGATACATAGATAAAAAAATTCAT
Found at i:50305083 original size:44 final size:44
Alignment explanation
Indices: 50305033--50305120 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
50305023 TGAGGTTTTA
50305033 TATGTCAAAGGCACTGACAATATTATTCCTAATTATCTTAGCAG
1 TATGTCAAAGGCACTGACAATATTATTCCTAATTATCTTAGCAG
*
50305077 TATGTCAAAGGCACTGACAATATTATTGCTAATTATCTTAGCAG
1 TATGTCAAAGGCACTGACAATATTATTCCTAATTATCTTAGCAG
50305121 ACCTTATGGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (44 bp):
TATGTCAAAGGCACTGACAATATTATTCCTAATTATCTTAGCAG
Found at i:50305642 original size:43 final size:43
Alignment explanation
Indices: 50305561--50305653 Score: 125
Period size: 43 Copynumber: 2.2 Consensus size: 43
50305551 AGTTGTGGTT
* *
50305561 GCTTCCTTTTTTGTTGTTTCTTGGTTGTGGTCGCTTCCACGTTA
1 GCTTCCTTTTTTGTCGTTTCTTGGTAGTGGTCGCTTCCACG-TA
***
50305605 -CTTCCTTTTTTGTCGTTTCTTGGTAGTGGTTTTTTCCACGTA
1 GCTTCCTTTTTTGTCGTTTCTTGGTAGTGGTCGCTTCCACGTA
50305647 GCTTCCT
1 GCTTCCT
50305654 CTGTCTTTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 2 0.05
43 41 0.95
ACGTcount: A:0.05, C:0.22, G:0.20, T:0.53
Consensus pattern (43 bp):
GCTTCCTTTTTTGTCGTTTCTTGGTAGTGGTCGCTTCCACGTA
Found at i:50314463 original size:45 final size:44
Alignment explanation
Indices: 50314390--50314499 Score: 105
Period size: 45 Copynumber: 2.5 Consensus size: 44
50314380 CATGGTGTCT
* * * *
50314390 TTCAACCGTGGTCTTACTCAT-TTATATCAAGACATCATAGCATC
1 TTCAACCATGGTTTTACTCATCCT-TATCAAGACACCATAGCATC
* * * ***
50314434 TTTCAGCTATGGTTTTACTCATCCTTATCATGGTGCCATAGCATC
1 -TTCAACCATGGTTTTACTCATCCTTATCAAGACACCATAGCATC
50314479 TTCAACCATGGTTTTACTCAT
1 TTCAACCATGGTTTTACTCAT
50314500 TTTTAGGCAT
Statistics
Matches: 52, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
44 19 0.37
45 32 0.62
46 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.38
Consensus pattern (44 bp):
TTCAACCATGGTTTTACTCATCCTTATCAAGACACCATAGCATC
Found at i:50316132 original size:42 final size:42
Alignment explanation
Indices: 50316084--50316165 Score: 121
Period size: 42 Copynumber: 1.9 Consensus size: 42
50316074 TTTTATCCCA
* *
50316084 GAAAAAAGAATTTA-AAAAGAGGATAAGATAATCTTGGGTTGTT
1 GAAAAAAGAATTTACAAAA-A-GAGAAGATAAACTTGGGTTGTT
50316127 GAAAAAAGAATTTACAAAAAGAGAAGATAAACTTGGGTT
1 GAAAAAAGAATTTACAAAAAGAGAAGATAAACTTGGGTT
50316166 ATTGGATTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 17 0.47
43 15 0.42
44 4 0.11
ACGTcount: A:0.50, C:0.04, G:0.22, T:0.24
Consensus pattern (42 bp):
GAAAAAAGAATTTACAAAAAGAGAAGATAAACTTGGGTTGTT
Found at i:50319510 original size:36 final size:36
Alignment explanation
Indices: 50319463--50319536 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
50319453 ATCATATTTC
*
50319463 ATTTGTTTTACAAATATCTCAATTCTGATACTTACT
1 ATTTGTTTTACAAATATCTCAATTCTCATACTTACT
50319499 ATTTGTTTTACAAATATCTCAATTCTCATACTTACT
1 ATTTGTTTTACAAATATCTCAATTCTCATACTTACT
50319535 AT
1 AT
50319537 ATAAATAACT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.31, C:0.18, G:0.04, T:0.47
Consensus pattern (36 bp):
ATTTGTTTTACAAATATCTCAATTCTCATACTTACT
Found at i:50320828 original size:12 final size:12
Alignment explanation
Indices: 50320811--50320880 Score: 60
Period size: 12 Copynumber: 6.2 Consensus size: 12
50320801 TTCTCCTTTC
50320811 TTTCTTTCTCTT
1 TTTCTTTCTCTT
*
50320823 TTTCTTTTTCATT
1 TTTCTTTCTC-TT
* *
50320836 TTGC-TTCTCTG
1 TTTCTTTCTCTT
50320847 TTTCTTTCT-TT
1 TTTCTTTCTCTT
*
50320858 TTT-TTTCT-AT
1 TTTCTTTCTCTT
50320868 TTTCTTT-TCTT
1 TTTCTTTCTCTT
50320879 TT
1 TT
50320881 ATTTCTTTGT
Statistics
Matches: 46, Mismatches: 8, Indels: 9
0.73 0.13 0.14
Matches are distributed among these distances:
10 10 0.22
11 14 0.30
12 17 0.37
13 5 0.11
ACGTcount: A:0.03, C:0.19, G:0.03, T:0.76
Consensus pattern (12 bp):
TTTCTTTCTCTT
Found at i:50320885 original size:21 final size:21
Alignment explanation
Indices: 50320847--50320886 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
50320837 TGCTTCTCTG
*
50320847 TTTCTTTCTTTTTTTTTCTAT
1 TTTCTTTCTTTTTATTTCTAT
50320868 TTTCTTT-TCTTTTATTTCT
1 TTTCTTTCT-TTTTATTTCT
50320887 TTGTTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTCTTTCTTTTTATTTCTAT
Found at i:50327483 original size:70 final size:70
Alignment explanation
Indices: 50327393--50327546 Score: 188
Period size: 70 Copynumber: 2.2 Consensus size: 70
50327383 ACCTATAGTT
* * * * *
50327393 CAAATTCAATAGAATATCACATATAGTTGAATATGCACATTCAAGT-TAACTTCATATAT-GACC
1 CAAATTCAATATAATATCACATATAATCGAATATGCAAATTCAA-TATAACTTCACATATAG-CC
50327456 GAATATA
64 GAATATA
* *
50327463 CAAATTCAATATAA-ACTCACATATAATCGAATATTCAAATTCAATATAACTTCACATGTAGCCG
1 CAAATTCAATATAATA-TCACATATAATCGAATATGCAAATTCAATATAACTTCACATATAGCCG
50327527 AATATA
65 AATATA
*
50327533 CAAGTTCAATATAA
1 CAAATTCAATATAA
50327547 GCTTACATGT
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
69 2 0.03
70 70 0.96
71 1 0.01
ACGTcount: A:0.45, C:0.17, G:0.08, T:0.31
Consensus pattern (70 bp):
CAAATTCAATATAATATCACATATAATCGAATATGCAAATTCAATATAACTTCACATATAGCCGA
ATATA
Found at i:50327494 original size:35 final size:36
Alignment explanation
Indices: 50327440--50327554 Score: 137
Period size: 35 Copynumber: 3.3 Consensus size: 36
50327430 CATTCAAGTT
* *
50327440 AACTTCATATATGACCGAATATACAAATTCAATATA
1 AACTTCACATATAACCGAATATACAAATTCAATATA
* *
50327476 AAC-TCACATATAATCGAATATTCAAATTCAATAT-
1 AACTTCACATATAACCGAATATACAAATTCAATATA
* * *
50327510 AACTTCACATGTAGCCGAATATACAAGTTCAATATA
1 AACTTCACATATAACCGAATATACAAATTCAATATA
*
50327546 AGCTT-ACAT
1 AACTTCACAT
50327555 GTACTTACCC
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
34 3 0.04
35 57 0.85
36 7 0.10
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.30
Consensus pattern (36 bp):
AACTTCACATATAACCGAATATACAAATTCAATATA
Found at i:50334507 original size:8 final size:8
Alignment explanation
Indices: 50334494--50334518 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
50334484 CAATAATATT
50334494 ACACATTA
1 ACACATTA
50334502 ACACATTA
1 ACACATTA
50334510 ACACATTA
1 ACACATTA
50334518 A
1 A
50334519 GATACCTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (8 bp):
ACACATTA
Found at i:50334804 original size:35 final size:35
Alignment explanation
Indices: 50334714--50334867 Score: 104
Period size: 35 Copynumber: 4.4 Consensus size: 35
50334704 ACCTATAGTT
* *
50334714 CAAATTCAATAGAATA-TCACATATCG-CCGAATATG
1 CAAATTCAATATAA-ACTCACATAT-GACCGAATATA
* *
50334749 CACATTCAAGT-T-AACTTCACATATGACCGAATACA
1 CAAATTCAA-TATAAAC-TCACATATGACCGAATATA
* * ** *
50334784 CAAATTCAATATAAACTCACATGTAATTGAATATT
1 CAAATTCAATATAAACTCACATATGACCGAATATA
* *
50334819 CAAATTCAATATAACCTCAC--ATGCAGCCAAATATA
1 CAAATTCAATATAAACTCACATATG-A-CCGAATATA
*
50334854 CAAGTTCAATATAA
1 CAAATTCAATATAA
50334868 GCTTACATGT
Statistics
Matches: 92, Mismatches: 19, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
33 2 0.02
34 4 0.04
35 82 0.89
36 4 0.04
ACGTcount: A:0.44, C:0.21, G:0.08, T:0.27
Consensus pattern (35 bp):
CAAATTCAATATAAACTCACATATGACCGAATATA
Found at i:50337881 original size:33 final size:33
Alignment explanation
Indices: 50337844--50337913 Score: 83
Period size: 33 Copynumber: 2.1 Consensus size: 33
50337834 TATTTATACA
50337844 ATTATAATATT-TTATT-TAAATT-AGTAGATATTT
1 ATTAT-ATATTATTATTAT-AATTAAG-AGATATTT
*
50337877 ATTATTTATTATTATTATAATTAAGAGATATTT
1 ATTATATATTATTATTATAATTAAGAGATATTT
50337910 ATTA
1 ATTA
50337914 ATTAAATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
32 4 0.12
33 26 0.79
34 3 0.09
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (33 bp):
ATTATATATTATTATTATAATTAAGAGATATTT
Found at i:50337935 original size:33 final size:33
Alignment explanation
Indices: 50337833--50337935 Score: 82
Period size: 33 Copynumber: 3.0 Consensus size: 33
50337823 TGTAATGATA
* * *
50337833 ATATTTATACAATTATAATATTTTATTTAAATTAGTAG
1 ATATTTAT-TAATTATAATA-ATTA--TAAATAAG-AG
* * * *
50337871 ATATTTATTATTTATTATTATTATAATTAAGAG
1 ATATTTATTAATTATAATAATTATAAATAAGAG
50337904 ATATTTATTAATTA-AATAATTATAAAATAAGA
1 ATATTTATTAATTATAATAATTAT-AAATAAGA
50337936 TTTTTATGTG
Statistics
Matches: 53, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
32 7 0.13
33 22 0.42
34 6 0.11
36 3 0.06
37 7 0.13
38 8 0.15
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.49
Consensus pattern (33 bp):
ATATTTATTAATTATAATAATTATAAATAAGAG
Found at i:50339177 original size:6 final size:6
Alignment explanation
Indices: 50339166--50339192 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
50339156 ATGTGCCGAC
50339166 TACTGT TACTGT TACTGT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TAC
50339193 CGATTCGACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (6 bp):
TACTGT
Found at i:50339222 original size:45 final size:45
Alignment explanation
Indices: 50339172--50339275 Score: 156
Period size: 45 Copynumber: 2.3 Consensus size: 45
50339162 CGACTACTGT
*
50339172 TACTGTTACTGTTACTGTTACCGATTC-GACACTTTATATGTCGAA
1 TACTGTTACTGTTACTGTTACAGATTCAG-CACTTTATATGTCGAA
* * *
50339217 TACTGTTACTGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACTGTTACAGATTCAGCACTTTATATGTCGAA
50339262 TACTGTTACTGTTA
1 TACTGTTACTGTTA
50339276 TTGCTACTAC
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
45 53 0.98
46 1 0.02
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.42
Consensus pattern (45 bp):
TACTGTTACTGTTACTGTTACAGATTCAGCACTTTATATGTCGAA
Found at i:50342594 original size:19 final size:19
Alignment explanation
Indices: 50342570--50342607 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
50342560 TATACCGAAT
50342570 TAATTGTTGAGATATTAAC
1 TAATTGTTGAGATATTAAC
50342589 TAATTGTTGAGATATTAAC
1 TAATTGTTGAGATATTAAC
50342608 CATTACACGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (19 bp):
TAATTGTTGAGATATTAAC
Found at i:50342761 original size:29 final size:30
Alignment explanation
Indices: 50342686--50342798 Score: 88
Period size: 29 Copynumber: 3.9 Consensus size: 30
50342676 TGATATCCAC
* * *
50342686 CACCGATACATAGTACCTAGAAA-TAT-AT
1 CACCAATACATAGTACTTGGAAACTATAAT
* * * * *
50342714 CACCGACATAGAGTGCTTGGAAACTATAA-
1 CACCAATACATAGTACTTGGAAACTATAAT
*
50342743 CACCAATACATAGTACTTGGAAACTGTAAT
1 CACCAATACATAGTACTTGGAAACTATAAT
*** *
50342773 CACTGGTACATAGTACCTGGAAACTA
1 CACCAATACATAGTACTTGGAAACTA
50342799 ATATCAACGG
Statistics
Matches: 65, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
28 17 0.26
29 26 0.40
30 22 0.34
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (30 bp):
CACCAATACATAGTACTTGGAAACTATAAT
Found at i:50349900 original size:28 final size:28
Alignment explanation
Indices: 50349868--50349925 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
50349858 AAATGTTGGA
*
50349868 AAATTTTCTAAGTTTCCCAAATTTTGCT
1 AAATTTTCTAAGTTTCCCAAAGTTTGCT
50349896 AAATTTTCTAAGTTTCCCAAAGTTTGCT
1 AAATTTTCTAAGTTTCCCAAAGTTTGCT
50349924 AA
1 AA
50349926 TGTTATCAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.31, C:0.17, G:0.09, T:0.43
Consensus pattern (28 bp):
AAATTTTCTAAGTTTCCCAAAGTTTGCT
Found at i:50352270 original size:26 final size:26
Alignment explanation
Indices: 50352241--50352313 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
50352231 TCTCATCCCA
*
50352241 ATTTTACCCCTAGCAAAATTTTG-TCG
1 ATTTTACCCCTAGTAAAATTTTGAT-G
* * *
50352267 ATTTTAGCCTTGGTAAAATTTTGATG
1 ATTTTACCCCTAGTAAAATTTTGATG
* *
50352293 ATTTTTCCCCAAGTAAAATTT
1 ATTTTACCCCTAGTAAAATTT
50352314 CTAGAAAATA
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
26 36 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.42
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTGATG
Found at i:50352479 original size:6 final size:6
Alignment explanation
Indices: 50352461--50352510 Score: 55
Period size: 6 Copynumber: 8.3 Consensus size: 6
50352451 TGCAAATGGA
* * * * *
50352461 TCATTT ACATTT TCGTTT TCATTT TCATTT ACATTT CCATTT CCATTT
1 TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT
50352509 TC
1 TC
50352511 GGAAACCTAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.18, C:0.22, G:0.02, T:0.58
Consensus pattern (6 bp):
TCATTT
Found at i:50352485 original size:12 final size:12
Alignment explanation
Indices: 50352461--50352510 Score: 64
Period size: 12 Copynumber: 4.2 Consensus size: 12
50352451 TGCAAATGGA
50352461 TCATTTACATTT
1 TCATTTACATTT
* *
50352473 TCGTTTTCATTT
1 TCATTTACATTT
50352485 TCATTTACATTT
1 TCATTTACATTT
* *
50352497 CCATTTCCATTT
1 TCATTTACATTT
50352509 TC
1 TC
50352511 GGAAACCTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.18, C:0.22, G:0.02, T:0.58
Consensus pattern (12 bp):
TCATTTACATTT
Found at i:50352489 original size:24 final size:24
Alignment explanation
Indices: 50352461--50352510 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
50352451 TGCAAATGGA
* * *
50352461 TCATTTACATTTTCGTTTTCATTT
1 TCATTTACATTTCCATTTCCATTT
50352485 TCATTTACATTTCCATTTCCATTT
1 TCATTTACATTTCCATTTCCATTT
50352509 TC
1 TC
50352511 GGAAACCTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.18, C:0.22, G:0.02, T:0.58
Consensus pattern (24 bp):
TCATTTACATTTCCATTTCCATTT
Found at i:50354517 original size:27 final size:27
Alignment explanation
Indices: 50354487--50354550 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
50354477 TTGCCTTGTA
*
50354487 TTTACTAG-CCCAACGGACTATACCGTG
1 TTTACT-GTCCCAACGGACTATACCATG
* * *
50354514 TTTAGTGTCCCATCGGACTATCCCATG
1 TTTACTGTCCCAACGGACTATACCATG
*
50354541 TTTAGTGTCC
1 TTTACTGTCC
50354551 TATTAGACTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.03
27 31 0.97
ACGTcount: A:0.20, C:0.28, G:0.19, T:0.33
Consensus pattern (27 bp):
TTTACTGTCCCAACGGACTATACCATG
Found at i:50354559 original size:27 final size:27
Alignment explanation
Indices: 50354502--50354562 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
50354492 TAGCCCAACG
* * *
50354502 GACTATACCGTGTTTAGTGTCCCATCG
1 GACTATCCCATGTTTAGTGTCCCATCA
* *
50354529 GACTATCCCATGTTTAGTGTCCTATTA
1 GACTATCCCATGTTTAGTGTCCCATCA
50354556 GACTATC
1 GACTATC
50354563 TATGATGTCG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (27 bp):
GACTATCCCATGTTTAGTGTCCCATCA
Found at i:50354856 original size:44 final size:43
Alignment explanation
Indices: 50354768--50354857 Score: 108
Period size: 44 Copynumber: 2.1 Consensus size: 43
50354758 TCTGGCATGC
* * *
50354768 TTTCATATGATGCCATAACATCTTTCAGCTATGGTCTTACTCA
1 TTTCATATGATGCCATAACATCTTTCAGCTACGCTCCTACTCA
* * * *
50354811 TTTCATCATGATGCCATAGCATCTTTTAGTTACGCTCCTATTCA
1 TTTCAT-ATGATGCCATAACATCTTTCAGCTACGCTCCTACTCA
50354855 TTT
1 TTT
50354858 TAGGCGTATA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 6 0.15
44 33 0.85
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.42
Consensus pattern (43 bp):
TTTCATATGATGCCATAACATCTTTCAGCTACGCTCCTACTCA
Found at i:50355653 original size:19 final size:19
Alignment explanation
Indices: 50355613--50355657 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
50355603 ATATAAAATT
* *
50355613 TTATTTT-ATTTTTATAAA
1 TTATTTTGAATTTTAAAAA
50355631 -TATTTTGAATTTTAAAAA
1 TTATTTTGAATTTTAAAAA
50355649 TTATTTTGA
1 TTATTTTGA
50355658 TTTATTTTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 6 0.26
18 9 0.39
19 8 0.35
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (19 bp):
TTATTTTGAATTTTAAAAA
Found at i:50361938 original size:18 final size:18
Alignment explanation
Indices: 50361906--50361943 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
50361896 ATATAAAAAT
*
50361906 TTTAGAAATATATAT-AA
1 TTTAGAAAAATATATGAA
50361923 TTTAGAAAAATAATATGAA
1 TTTAGAAAAAT-ATATGAA
50361942 TT
1 TT
50361944 ATAAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 10 0.56
18 4 0.22
19 4 0.22
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TTTAGAAAAATATATGAA
Found at i:50362439 original size:26 final size:28
Alignment explanation
Indices: 50362399--50362454 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 28
50362389 TATCTAAATA
**
50362399 TTTAATATTATAATTTTCTATTTCTATT
1 TTTAATATTATAATTTAATATTTCTATT
*
50362427 TTTAAT-TTA-AATTTAATATTTTTATT
1 TTTAATATTATAATTTAATATTTCTATT
50362453 TT
1 TT
50362455 AAGTAGATCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 16 0.64
27 3 0.12
28 6 0.24
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (28 bp):
TTTAATATTATAATTTAATATTTCTATT
Done.