Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 171 of 297
Found at i:57544519 original size:82 final size:81
Alignment explanation
Indices: 57544406--57544561 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
57544396 AAATTGTACA
* *
57544406 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
57544470 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
57544487 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
57544552 TGCGAGTTGA
65 TGCGAATTGA
57544562 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:57544573 original size:82 final size:81
Alignment explanation
Indices: 57544402--57544582 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
57544392 GATTAAATTG
* *
57544402 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
57544467 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
57544483 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
57544547 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
57544565 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
57544583 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:57548399 original size:29 final size:29
Alignment explanation
Indices: 57548357--57548427 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
57548347 CATTAAGCCC
*
57548357 AATCATATTCATATGACCCATTAGGCCTA
1 AATCACATTCATATGACCCATTAGGCCTA
* * *
57548386 AATCACATTTATATGGCCCATTAGGCC-C
1 AATCACATTCATATGACCCATTAGGCCTA
*
57548414 AGTCACATTCATAT
1 AATCACATTCATAT
57548428 TCATGCTCAC
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 12 0.33
29 24 0.67
ACGTcount: A:0.32, C:0.25, G:0.11, T:0.31
Consensus pattern (29 bp):
AATCACATTCATATGACCCATTAGGCCTA
Found at i:57548662 original size:16 final size:16
Alignment explanation
Indices: 57548643--57548679 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
57548633 AAACTTTCAG
57548643 CTTTTCGGCATTTCGA
1 CTTTTCGGCATTTCGA
*
57548659 CTTTTCGGCATTTCGG
1 CTTTTCGGCATTTCGA
57548675 CTTTT
1 CTTTT
57548680 GCCGATACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.08, C:0.24, G:0.19, T:0.49
Consensus pattern (16 bp):
CTTTTCGGCATTTCGA
Found at i:57552254 original size:38 final size:38
Alignment explanation
Indices: 57552212--57552289 Score: 129
Period size: 38 Copynumber: 2.1 Consensus size: 38
57552202 CTCAGTTTCC
*
57552212 TTAACTAGGTTAACTCCGTGAATCTGGTTTTCTTTAAG
1 TTAACTAGGTCAACTCCGTGAATCTGGTTTTCTTTAAG
* *
57552250 TTAACTAGGTCAACTCTGTGAATCTGGTTTTCTTTCAG
1 TTAACTAGGTCAACTCCGTGAATCTGGTTTTCTTTAAG
57552288 TT
1 TT
57552290 CTATCCAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.44
Consensus pattern (38 bp):
TTAACTAGGTCAACTCCGTGAATCTGGTTTTCTTTAAG
Found at i:57554676 original size:36 final size:36
Alignment explanation
Indices: 57554629--57554700 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
57554619 AAGCAAGGTA
57554629 GGATTCATATCCTTTTCTCATATACCTTTGAGCCAT
1 GGATTCATATCCTTTTCTCATATACCTTTGAGCCAT
*
57554665 GGATTTATATCCTTTTCTCATATACCTTTGAGCCAT
1 GGATTCATATCCTTTTCTCATATACCTTTGAGCCAT
57554701 CATTGAGGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (36 bp):
GGATTCATATCCTTTTCTCATATACCTTTGAGCCAT
Found at i:57557499 original size:19 final size:19
Alignment explanation
Indices: 57557475--57557533 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
57557465 AGCCCCCCCC
57557475 AAAAAAAACCTAACCCAAA
1 AAAAAAAACCTAACCCAAA
*
57557494 AAAAAAAA---GA---AAA
1 AAAAAAAACCTAACCCAAA
*
57557507 AAGAAAAACCTAACCCAAA
1 AAAAAAAACCTAACCCAAA
57557526 AAAAAAAA
1 AAAAAAAA
57557534 TTAAGAAACC
Statistics
Matches: 30, Mismatches: 4, Indels: 12
0.65 0.09 0.26
Matches are distributed among these distances:
13 10 0.33
16 2 0.07
19 18 0.60
ACGTcount: A:0.76, C:0.17, G:0.03, T:0.03
Consensus pattern (19 bp):
AAAAAAAACCTAACCCAAA
Found at i:57557543 original size:27 final size:30
Alignment explanation
Indices: 57557475--57557532 Score: 91
Period size: 32 Copynumber: 1.9 Consensus size: 30
57557465 AGCCCCCCCC
57557475 AAAA-AAAACCTAACCCAAAAAAAAAAAGAA
1 AAAAGAAAACCTAACCC-AAAAAAAAAAGAA
57557505 AAAAGAAAAACCTAACCCAAAAAAAAAA
1 AAAAG-AAAACCTAACCCAAAAAAAAAA
57557533 ATTAAGAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
30 4 0.15
31 10 0.38
32 12 0.46
ACGTcount: A:0.76, C:0.17, G:0.03, T:0.03
Consensus pattern (30 bp):
AAAAGAAAACCTAACCCAAAAAAAAAAGAA
Found at i:57566727 original size:54 final size:54
Alignment explanation
Indices: 57566651--57566753 Score: 161
Period size: 54 Copynumber: 1.9 Consensus size: 54
57566641 TCACACAAGA
** *
57566651 TGAGACATGGGCGTGTGACCCAAGTAAGTGAGTTACATGGTCTGGCACACGGGT
1 TGAGACATGGGCGCATGACCCAAGTAAGTGAGTTACACGGTCTGGCACACGGGT
* *
57566705 TGAGACATGGGCGCATGGCCCAAGTCAGTGAGTTACACGGTCTGGCACA
1 TGAGACATGGGCGCATGACCCAAGTAAGTGAGTTACACGGTCTGGCACA
57566754 TGGTTGGGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.24, C:0.21, G:0.34, T:0.20
Consensus pattern (54 bp):
TGAGACATGGGCGCATGACCCAAGTAAGTGAGTTACACGGTCTGGCACACGGGT
Found at i:57566771 original size:54 final size:54
Alignment explanation
Indices: 57566651--57566771 Score: 145
Period size: 54 Copynumber: 2.2 Consensus size: 54
57566641 TCACACAAGA
* ** * *
57566651 TGAGACATGGGCGTGTGACCCAAGTAAGTGAGTTACATGGTCTGGCACACGGGT
1 TGAGACAAGGGCGCATGGCCCAAGTAAGTGAGTTACACGGTCTGGCACACGGGT
* * *
57566705 TGAGACATGGGCGCATGGCCCAAGTCAGTGAGTTACACGGTCTGGCACA-TGGT
1 TGAGACAAGGGCGCATGGCCCAAGTAAGTGAGTTACACGGTCTGGCACACGGGT
*
57566758 TGGGTACAAGGGCG
1 TGAG-ACAAGGGCG
57566772 TGTAAAATGG
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
53 6 0.10
54 52 0.90
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (54 bp):
TGAGACAAGGGCGCATGGCCCAAGTAAGTGAGTTACACGGTCTGGCACACGGGT
Found at i:57569198 original size:147 final size:146
Alignment explanation
Indices: 57568991--57569263 Score: 456
Period size: 147 Copynumber: 1.9 Consensus size: 146
57568981 GACACGCCCA
* * * *
57568991 TGTCCCTTACCCATGTTGAATTATTGGAATTTATTTTTTATTTGGAACCTATATGGGTTTTTACA
1 TGTCCCTTACCCATGTTGAATTATTGGAATTTATTTTTCATTTGGAACCTACAGGGGTTTTCACA
57569056 TGGCCGAGCACACGCCCGTGTCCCTCACACGGCATAGACACGCTCGTGCCATCGCCCGTGTGCAG
66 TGGCCGAGCACACGCCCGTGTCCCTCACACGGCATAGACACGCTCGTGCCATCGCCCGTGTGCAG
57569121 GCAATGCACATGTTCG
131 GCAATGCACATGTTCG
* * *
57569137 TGTCCTTTACCCGTGTTGAATTATTTGGAATTTATTTTTCATTTTGAACCTACAGGGGTTTTCAC
1 TGTCCCTTACCCATGTTGAATTA-TTGGAATTTATTTTTCATTTGGAACCTACAGGGGTTTTCAC
* *
57569202 ATGGCCGAGCACACGCCCGTGTCCCTCACACGGCCTAGACACGCTCGTGTCATCGCCCGTGT
65 ATGGCCGAGCACACGCCCGTGTCCCTCACACGGCATAGACACGCTCGTGCCATCGCCCGTGT
57569264 CCAAAAACCT
Statistics
Matches: 117, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
146 21 0.18
147 96 0.82
ACGTcount: A:0.19, C:0.27, G:0.22, T:0.32
Consensus pattern (146 bp):
TGTCCCTTACCCATGTTGAATTATTGGAATTTATTTTTCATTTGGAACCTACAGGGGTTTTCACA
TGGCCGAGCACACGCCCGTGTCCCTCACACGGCATAGACACGCTCGTGCCATCGCCCGTGTGCAG
GCAATGCACATGTTCG
Found at i:57569250 original size:28 final size:29
Alignment explanation
Indices: 57569198--57569252 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
57569188 ACAGGGGTTT
*
57569198 TCACATGGCCGAGCACACGCCCGTGTCCC
1 TCACACGGCCGAGCACACGCCCGTGTCCC
* *
57569227 TCACACGGCCTAG-ACACGCTCGTGTC
1 TCACACGGCCGAGCACACGCCCGTGTC
57569253 ATCGCCCGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.18, C:0.42, G:0.24, T:0.16
Consensus pattern (29 bp):
TCACACGGCCGAGCACACGCCCGTGTCCC
Found at i:57585779 original size:58 final size:58
Alignment explanation
Indices: 57585717--57585855 Score: 165
Period size: 58 Copynumber: 2.4 Consensus size: 58
57585707 TTAATTCATA
* * * *
57585717 TAATAATAATTATATTAAGAATTTTATTAATTTATATATTAT-TTTATTAAATTATATT
1 TAATAATAATTATATTAA-AATTTGATTAAATTATATATTATATTTATCAAAATATATT
* * * * *
57585775 TAATAATAATTATGTTAAAATATGGTTAAATTATTTATTATATTTATCAAAATATTTT
1 TAATAATAATTATATTAAAATTTGATTAAATTATATATTATATTTATCAAAATATATT
57585833 TAATAATAATCT-TATTAAAATTT
1 TAATAATAAT-TATATTAAAATTT
57585856 AATAAGAATA
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 18 0.26
58 49 0.72
59 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (58 bp):
TAATAATAATTATATTAAAATTTGATTAAATTATATATTATATTTATCAAAATATATT
Found at i:57586118 original size:58 final size:58
Alignment explanation
Indices: 57586056--57586194 Score: 165
Period size: 58 Copynumber: 2.4 Consensus size: 58
57586046 TTAATTCATA
* * * *
57586056 TAATAATAATTATATTAAGAATTTTATTAATTTATATATTAT-TTTATTAAATTATATT
1 TAATAATAATTATATTAA-AATTTGATTAAATTATATATTATATTTATCAAAATATATT
* * * * *
57586114 TAATAATAATTATGTTAAAATATGGTTAAATTATTTATTATATTTATCAAAATATTTT
1 TAATAATAATTATATTAAAATTTGATTAAATTATATATTATATTTATCAAAATATATT
57586172 TAATAATAATCT-TATTAAAATTT
1 TAATAATAAT-TATATTAAAATTT
57586195 AATAAGAATA
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 18 0.26
58 49 0.72
59 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (58 bp):
TAATAATAATTATATTAAAATTTGATTAAATTATATATTATATTTATCAAAATATATT
Found at i:57586208 original size:339 final size:340
Alignment explanation
Indices: 57585579--57586265 Score: 1358
Period size: 339 Copynumber: 2.0 Consensus size: 340
57585569 ATATTTTGTT
57585579 TTTTTATTGTAGAATAATTAAATTATTTGTTTCACTAATGATATTTTAACACATTAAATATGTAT
1 TTTTT-TTGTAGAATAATTAAATTATTTGTTTCACTAATGATATTTTAACACATTAAATATGTAT
57585644 TGCAGTTTAAATAGAATAAAGTAGATTATATATTATTTTTATAGTATTATATATTGTGATTTTTT
65 TGCAGTTTAAATAGAATAAAGTAGATTATATATTATTTTTATAGTATTATATATTGTGATTTTTT
57585709 AATTCATATAATAATAATTATATTAAGAATTTTATTAATTTATATATTATTTTATTAAATTATAT
130 AATTCATATAATAATAATTATATTAAGAATTTTATTAATTTATATATTATTTTATTAAATTATAT
57585774 TTAATAATAATTATGTTAAAATATGGTTAAATTATTTATTATATTTATCAAAATATTTTTAATAA
195 TTAATAATAATTATGTTAAAATATGGTTAAATTATTTATTATATTTATCAAAATATTTTTAATAA
57585839 TAATCTTATTAAAATTTAATAAGAATAACAATAATCATCTACCTAAAAAAATTTTTGCTAAGGGT
260 TAATCTTATTAAAATTTAATAAGAATAACAATAATCATCTACCTAAAAAAATTTTTGCTAAGGGT
57585904 ATTCTAGTCATTTTAG
325 ATTCTAGTCATTTTAG
57585920 TTTTTTT-TAGAATAATTAAATTATTTGTTTCACTAATGATATTTTAACACATTAAATATGTATT
1 TTTTTTTGTAGAATAATTAAATTATTTGTTTCACTAATGATATTTTAACACATTAAATATGTATT
57585984 GCAGTTTAAATAGAATAAAGTAGATTATATATTATTTTTATAGTATTATATATTGTGATTTTTTA
66 GCAGTTTAAATAGAATAAAGTAGATTATATATTATTTTTATAGTATTATATATTGTGATTTTTTA
57586049 ATTCATATAATAATAATTATATTAAGAATTTTATTAATTTATATATTATTTTATTAAATTATATT
131 ATTCATATAATAATAATTATATTAAGAATTTTATTAATTTATATATTATTTTATTAAATTATATT
57586114 TAATAATAATTATGTTAAAATATGGTTAAATTATTTATTATATTTATCAAAATATTTTTAATAAT
196 TAATAATAATTATGTTAAAATATGGTTAAATTATTTATTATATTTATCAAAATATTTTTAATAAT
57586179 AATCTTATTAAAATTTAATAAGAATAACAATAATCATCTACCTAAAAAAATTTTTGCTAAGGGTA
261 AATCTTATTAAAATTTAATAAGAATAACAATAATCATCTACCTAAAAAAATTTTTGCTAAGGGTA
57586244 TTCTAGTCATTTTAG
326 TTCTAGTCATTTTAG
57586259 TTTTTTT
1 TTTTTTT
57586266 CCATATGCTA
Statistics
Matches: 346, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
339 339 0.98
340 2 0.01
341 5 0.01
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.48
Consensus pattern (340 bp):
TTTTTTTGTAGAATAATTAAATTATTTGTTTCACTAATGATATTTTAACACATTAAATATGTATT
GCAGTTTAAATAGAATAAAGTAGATTATATATTATTTTTATAGTATTATATATTGTGATTTTTTA
ATTCATATAATAATAATTATATTAAGAATTTTATTAATTTATATATTATTTTATTAAATTATATT
TAATAATAATTATGTTAAAATATGGTTAAATTATTTATTATATTTATCAAAATATTTTTAATAAT
AATCTTATTAAAATTTAATAAGAATAACAATAATCATCTACCTAAAAAAATTTTTGCTAAGGGTA
TTCTAGTCATTTTAG
Found at i:57586395 original size:16 final size:16
Alignment explanation
Indices: 57586360--57586414 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
57586350 TGAATTACTG
*
57586360 ATTACAACTCTATT-A
1 ATTACAGCTCTATTCA
57586375 CATTACAGCTCTATTCA
1 -ATTACAGCTCTATTCA
*
57586392 ATTACAGC-CTTATTCC
1 ATTACAGCTC-TATTCA
57586408 ATTACAG
1 ATTACAG
57586415 TGAGCCAAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 1 0.03
16 33 0.94
17 1 0.03
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.36
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:57589121 original size:46 final size:47
Alignment explanation
Indices: 57589024--57589289 Score: 199
Period size: 46 Copynumber: 5.7 Consensus size: 47
57589014 TTTGTGAGCC
* * * * * * *
57589024 AGTGTAAGACCATGTTTGGGACATGGCATCAGCATTGAGACGAAAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCCTCGAGATGTAGGCT
*
57589072 AGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCGAGATGTAGGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATGTAGGCT
* * *
57589118 AGTGTAAGATATGTTTGGGACAT-GCATCGG-CTACGAGATGT-GTC-
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCT-CGAGATGTAGGCT
* ** *
57589162 AGTGTAAGACTATGTCTGGGACATGGCGTCGGCCTCGATTTTGATAGTC-
1 AGTGTAAGAC-ATGTCTGGGACATGGCATCGGCCTCGA-GATG-TAGGCT
* * * *
57589211 AGTGTAAGCCCATGTCTGGGACATGGCATC-GACTTGATAGATG-A-GCC
1 AGTGTAAG-ACATGTCTGGGACATGGCATCGGCCTCG--AGATGTAGGCT
**
57589258 AGTGTAAGACCATGTCTGGGATGTGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGG
57589290 TATTATACCC
Statistics
Matches: 178, Mismatches: 27, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
44 9 0.05
45 16 0.09
46 62 0.35
47 43 0.24
48 15 0.08
49 31 0.17
50 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATGTAGGCT
Found at i:57591898 original size:53 final size:54
Alignment explanation
Indices: 57591818--57591977 Score: 198
Period size: 53 Copynumber: 3.0 Consensus size: 54
57591808 GACACTAAAT
* * * * *
57591818 AAGACAATATCATATAAGATCGTAACTATTAGGTTATGACATCATATAG-AAAG
1 AAGACCATATCGTGTAAGACCGTAACTAGTAGGTTATGACATCATATAGAAAAG
* *
57591871 AAGACCATATCGTGTAAGGCCGTAACTAGTGGGTTATGACATCATAT-GAAAAG
1 AAGACCATATCGTGTAAGACCGTAACTAGTAGGTTATGACATCATATAGAAAAG
* ** *
57591924 AATACCATATCGTGTAAGACTATAACTGGTAGGTTATGACATCATATAGGAAAA
1 AAGACCATATCGTGTAAGACCGTAACTAGTAGGTTATGACATCATATA-GAAAA
57591978 TTTAAGGAAG
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
52 1 0.01
53 85 0.93
55 5 0.05
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.27
Consensus pattern (54 bp):
AAGACCATATCGTGTAAGACCGTAACTAGTAGGTTATGACATCATATAGAAAAG
Found at i:57592135 original size:29 final size:28
Alignment explanation
Indices: 57592098--57592191 Score: 84
Period size: 29 Copynumber: 3.3 Consensus size: 28
57592088 AAAGGTTATC
*
57592098 CTTTATGGCAAAACTTTGGAAAGGTAAG
1 CTTTGTGGCAAAACTTTGGAAAGGTAAG
* * * *
57592126 CTTTCGTGGC-GAAC-TTGTAAAAGGACAAC
1 CTTT-GTGGCAAAACTTTG-GAAAGG-TAAG
57592155 CTTTGTGGCAAAACTTTGGAAAGGTAAG
1 CTTTGTGGCAAAACTTTGGAAAGGTAAG
*
57592183 TTTTTGTGG
1 -CTTTGTGG
57592192 TGAACCTATT
Statistics
Matches: 50, Mismatches: 10, Indels: 11
0.70 0.14 0.15
Matches are distributed among these distances:
27 3 0.06
28 19 0.38
29 25 0.50
30 3 0.06
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
CTTTGTGGCAAAACTTTGGAAAGGTAAG
Found at i:57592206 original size:57 final size:57
Alignment explanation
Indices: 57592097--57592207 Score: 159
Period size: 57 Copynumber: 1.9 Consensus size: 57
57592087 AAAAGGTTAT
* *
57592097 CCTTTATGGCAAAACTTTGGAAAGGTAAGCTTTCGTGGCGAACTTGTAAAAGGACAA
1 CCTTTATGGCAAAACTTTGGAAAGGTAAGCTTTCGTGGCGAACCTATAAAAGGACAA
* * * * *
57592154 CCTTTGTGGCAAAACTTTGGAAAGGTAAGTTTTTGTGGTGAACCTATTAAAGGA
1 CCTTTATGGCAAAACTTTGGAAAGGTAAGCTTTCGTGGCGAACCTATAAAAGGA
57592208 TGCCTTTGTG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
57 47 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (57 bp):
CCTTTATGGCAAAACTTTGGAAAGGTAAGCTTTCGTGGCGAACCTATAAAAGGACAA
Found at i:57595338 original size:34 final size:34
Alignment explanation
Indices: 57595295--57595364 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
57595285 AATACTAAGA
57595295 AGGATTATTATGTCGTCTACAATTACAATTGGAG
1 AGGATTATTATGTCGTCTACAATTACAATTGGAG
57595329 AGGATTATTATGTCGTCTACAATTACAATTGGAG
1 AGGATTATTATGTCGTCTACAATTACAATTGGAG
57595363 AG
1 AG
57595365 ATGACTAGTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.34
Consensus pattern (34 bp):
AGGATTATTATGTCGTCTACAATTACAATTGGAG
Found at i:57597894 original size:27 final size:26
Alignment explanation
Indices: 57597863--57598059 Score: 191
Period size: 27 Copynumber: 7.3 Consensus size: 26
57597853 CGTACCTGAA
* *
57597863 CCCTTACGAGATAAAATGACTATTTTG
1 CCCTTATGAGGTAAAATGAC-ATTTTG
* * *
57597890 CCCTTAT-ATGATAAAATAACGATTTTT
1 CCCTTATGA-GGTAAAATGAC-ATTTTG
57597917 CCCTTATGAGGTAAAATGA-AGGTTTTG
1 CCCTTATGAGGTAAAATGACA--TTTTG
* * * **
57597944 CCCTTGTGTGGCAAAATGATTGTTTTG
1 CCCTTATGAGGTAAAATGA-CATTTTG
* *
57597971 CCCTTATGTGATAAAATGACAATTTTG
1 CCCTTATGAGGTAAAATGAC-ATTTTG
57597998 CCCTTATGAGGTAAAATGACAGTTTTG
1 CCCTTATGAGGTAAAATGACA-TTTTG
57598025 CCCTTATGAGGTAAAATGACAGTTTTG
1 CCCTTATGAGGTAAAATGACA-TTTTG
57598052 CCCTTATG
1 CCCTTATG
57598060 TGATGTATGT
Statistics
Matches: 144, Mismatches: 18, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
25 1 0.01
26 2 0.01
27 140 0.97
28 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (26 bp):
CCCTTATGAGGTAAAATGACATTTTG
Found at i:57598002 original size:81 final size:81
Alignment explanation
Indices: 57597875--57598063 Score: 272
Period size: 81 Copynumber: 2.3 Consensus size: 81
57597865 CTTACGAGAT
* * * *
57597875 AAAATGACTATTTTGCCCTTATATGATAAAATAACGATTTTTCCCTTATGAGGTAAAATGA-AGG
1 AAAATGACTGTTTTGCCCTTATGTGATAAAATAACAATTTTGCCCTTATGAGGTAAAATGACA-G
* *
57597939 TTTTGCCCTTGTGTGGC
65 TTTTGCCCTTATGAGGC
* *
57597956 AAAATGATTGTTTTGCCCTTATGTGATAAAATGACAATTTTGCCCTTATGAGGTAAAATGACAGT
1 AAAATGACTGTTTTGCCCTTATGTGATAAAATAACAATTTTGCCCTTATGAGGTAAAATGACAGT
*
57598021 TTTGCCCTTATGAGGT
66 TTTGCCCTTATGAGGC
*
57598037 AAAATGACAGTTTTGCCCTTATGTGAT
1 AAAATGACTGTTTTGCCCTTATGTGAT
57598064 GTATGTGTAT
Statistics
Matches: 96, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 95 0.99
82 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (81 bp):
AAAATGACTGTTTTGCCCTTATGTGATAAAATAACAATTTTGCCCTTATGAGGTAAAATGACAGT
TTTGCCCTTATGAGGC
Found at i:57598418 original size:18 final size:18
Alignment explanation
Indices: 57598390--57598440 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
57598380 TTGCATGCAG
57598390 TTTACTGTTACTACACTGA
1 TTTACTGTTACTACACT-A
* *
57598409 -TTACTATTACTGCACTA
1 TTTACTGTTACTACACTA
57598426 TTTACTGTTACTACA
1 TTTACTGTTACTACA
57598441 ATGGGCCAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 1 0.04
18 26 0.96
ACGTcount: A:0.27, C:0.22, G:0.08, T:0.43
Consensus pattern (18 bp):
TTTACTGTTACTACACTA
Found at i:57598521 original size:40 final size:41
Alignment explanation
Indices: 57598429--57598526 Score: 96
Period size: 40 Copynumber: 2.5 Consensus size: 41
57598419 TGCACTATTT
* * * * *
57598429 ACTGTTACTACAATGGGCCAAGGCCCAAACACATGATTGTT
1 ACTGTTACTAAAATGGGCTAAAGCCCAAACACATGACTGTC
* *
57598470 TCTG-TATTAAAATGGGCTAAAGCCCAAACTA-ATG-CTGTC
1 ACTGTTACTAAAATGGGCTAAAGCCCAAAC-ACATGACTGTC
57598509 ACTGTTACTAAAA-GGGCT
1 ACTGTTACTAAAATGGGCT
57598527 TAGGCACAGG
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
39 11 0.24
40 31 0.67
41 4 0.09
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (41 bp):
ACTGTTACTAAAATGGGCTAAAGCCCAAACACATGACTGTC
Found at i:57599196 original size:24 final size:24
Alignment explanation
Indices: 57599097--57599202 Score: 135
Period size: 24 Copynumber: 4.4 Consensus size: 24
57599087 AAAGGCTATC
57599097 AGGAGAAGATTTAGGAGCTGA-CA
1 AGGAGAAGATTTAGGAGCTGATCA
* *
57599120 AGGGAGAGGATATAGGAGCTGAT-A
1 A-GGAGAAGATTTAGGAGCTGATCA
* *
57599144 AGGGAGAGGATTTAGGAGCTGATAA
1 A-GGAGAAGATTTAGGAGCTGATCA
57599169 AGGAGAAGATTTAGGAGCTGATCA
1 AGGAGAAGATTTAGGAGCTGATCA
57599193 AGGAGCAAGA
1 AGGAG-AAGA
57599203 GTTGGCCGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
23 1 0.01
24 67 0.91
25 6 0.08
ACGTcount: A:0.39, C:0.07, G:0.38, T:0.17
Consensus pattern (24 bp):
AGGAGAAGATTTAGGAGCTGATCA
Found at i:57602885 original size:36 final size:36
Alignment explanation
Indices: 57602838--57602910 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
57602828 ATATAAGTCT
57602838 CGGGACGACACTCTCTATAGTGTTGCATCATTCTTG
1 CGGGACGACACTCTCTATAGTGTTGCATCATTCTTG
*
57602874 CGGGACGACACTTTCTATAGTGTTGCATCATTCTTG
1 CGGGACGACACTCTCTATAGTGTTGCATCATTCTTG
57602910 C
1 C
57602911 ACTACGGCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (36 bp):
CGGGACGACACTCTCTATAGTGTTGCATCATTCTTG
Found at i:57603124 original size:43 final size:43
Alignment explanation
Indices: 57603072--57603322 Score: 270
Period size: 43 Copynumber: 5.9 Consensus size: 43
57603062 AGGCCGTTAT
* ** *
57603072 AGAACATGACCTTTAGCGGCGCTTTTCCCACAAAGGCCATTAT
1 AGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAA
* * * *
57603115 AGAATATGACCTTTAGCAGCGCTTTACCCACAAACGTCGCTAA
1 AGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAA
* ** **
57603158 AG-ACATGACCTTTAGTGGCGCTTTAGCCACAATTGCCGCTAA
1 AGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAA
** * * * *
57603200 AGAACATGACCTTTAGTAGCGCTTTCCCCATAAATGCCACTAA
1 AGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAA
* *
57603243 AAAACATGACCTTTAGCGGCGCTTTTCCCATAAACGCCGCTAA
1 AGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAA
* * * *
57603286 AAAACATGACTTTTAGTGGCGCTTTTCCCAAAAACGC
1 AGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGC
57603323 TTCAAAAGGT
Statistics
Matches: 177, Mismatches: 30, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
42 35 0.20
43 142 0.80
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (43 bp):
AGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAA
Found at i:57604039 original size:23 final size:23
Alignment explanation
Indices: 57603992--57605390 Score: 896
Period size: 23 Copynumber: 61.4 Consensus size: 23
57603982 AACCAGCAAC
** *
57603992 TAAACA-TTCAATTTGTAGCACT
1 TAAACACTTCAATTTACAGCATT
* *
57604014 TAAACACTTTAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
*
57604037 TAAACACTTCAATTTATAGCACTT
1 TAAACACTTCAATTTACAGCA-TT
* *
57604061 T-AACACTTTAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
* *
57604083 TAAGCACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTACAGCA-TT
* **
57604107 T-AACA-TCTCAATTAACAATATT
1 TAAACACT-TCAATTTACAGCATT
* * * *
57604129 TATACCCCTCAA-TTACAGTGA-T
1 TAAACACTTCAATTTACAG-CATT
* * * **
57604151 AAAACA-TCTCAATTTCCAACAAC
1 TAAACACT-TCAATTTACAGCATT
* * *
57604174 TAAATACTTCAATTTGCAGCACT
1 TAAACACTTCAATTTACAGCATT
*
57604197 TAAACTA-TTCAATTTACAACATT
1 TAAAC-ACTTCAATTTACAGCATT
* *
57604220 TAAACACTTAAATCT--A-C--T
1 TAAACACTTCAATTTACAGCATT
*
57604238 TAAACACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTACAGCA-TT
57604262 T-AACACTTCAATTTACAGCATT
1 TAAACACTTCAATTTACAGCATT
**
57604284 TAAACACTTCAATTTGTAGCAGTT
1 TAAACACTTCAATTTACAGCA-TT
* * *
57604308 T-AACA-TCTCAATTAAAAACATT
1 TAAACACT-TCAATTTACAGCATT
* * *
57604330 TATACACCTCAA-TTACAGTGA-T
1 TAAACACTTCAATTTACAG-CATT
* * * **
57604352 AAAACA-TCTCAATTTCCAACAAC
1 TAAACACT-TCAATTTACAGCATT
* * *
57604375 TAAATACTTCAATTTGCAGCACT
1 TAAACACTTCAATTTACAGCATT
* *
57604398 TAAACAATTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
*
57604421 TAAACACTTCAATTTAGAGCATT
1 TAAACACTTCAATTTACAGCATT
*
57604444 TAAACACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTACAGCA-TT
*
57604468 T-AACACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
* * *
57604490 TGAACACTTCAATTTGCATCACTT
1 TAAACACTTCAATTTACAGCA-TT
* *
57604514 T-AACA-TCTCAATTAACAACATT
1 TAAACACT-TCAATTTACAGCATT
* ** *
57604536 TATACACCCCAA-TTATAGCGA-T
1 TAAACACTTCAATTTACAGC-ATT
* * * **
57604558 AAAACA-TCTCAATTTTCAACAAC
1 TAAACACT-TCAATTTACAGCATT
* * *
57604581 TAAATACTTCAATTTGCAGCACT
1 TAAACACTTCAATTTACAGCATT
* *
57604604 TAAACAATTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
*
57604627 TAAACACTTCAATTTATAGCATT
1 TAAACACTTCAATTTACAGCATT
* *
57604650 TACACACTTCAATTTATAGCACTT
1 TAAACACTTCAATTTACAGCA-TT
*
57604674 T-AACACTTCAATTTATAGCATT
1 TAAACACTTCAATTTACAGCATT
*
57604696 TAAACACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTACAGCA-TT
* *
57604720 T-AACA-TCTCAATTAACAACATT
1 TAAACACT-TCAATTTACAGCATT
* *
57604742 TATACACCTCAA-TTACAGCGA-T
1 TAAACACTTCAATTTACAGC-ATT
* * **
57604764 AAAACA-TCTCAATTTCCAGCAAC
1 TAAACACT-TCAATTTACAGCATT
* *
57604787 TAAACACTTCAATTTGCAGCACT
1 TAAACACTTCAATTTACAGCATT
*
57604810 TAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
*
57604833 TAAACACTTCAATTTACTGCATT
1 TAAACACTTCAATTTACAGCATT
** *
57604856 TAAACACTTCAATTTGTAGTACTT
1 TAAACACTTCAATTTACAGCA-TT
*
57604880 T-AACACTTCAATTTATAGCATT
1 TAAACACTTCAATTTACAGCATT
* *
57604902 TAAACACTTCAATTTGCATCACTT
1 TAAACACTTCAATTTACAGCA-TT
* *
57604926 TAAA-A-TCTCAATTAACAACATT
1 TAAACACT-TCAATTTACAGCATT
* * * *
57604948 TATACACCTCAA-TTATAGCAAT
1 TAAACACTTCAATTTACAGCATT
* **
57604970 AAAACA-TCTCAATTT-CTAGCAAC
1 TAAACACT-TCAATTTAC-AGCATT
* *
57604993 TAAACACTTCAATTTACAACACT
1 TAAACACTTCAATTTACAGCATT
* * *
57605016 TAAACAATTAAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
* * *
57605039 TAAACACTTTAATTTATAACATT
1 TAAACACTTCAATTTACAGCATT
* *
57605062 TATACACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTACAGCA-TT
* **
57605086 T-AACA-TCTCAATTAACAATATT
1 TAAACACT-TCAATTTACAGCATT
* *
57605108 TATACACCTCAA-TTACAGCGA--
1 TAAACACTTCAATTTACAGC-ATT
* **
57605129 TAAAGCA-TCTCAATTTCCAGCAAC
1 TAAA-CACT-TCAATTTACAGCATT
* *
57605153 TAAACACTTCAATTTGCAGCACT
1 TAAACACTTCAATTTACAGCATT
* *
57605176 TAAAAACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
57605199 TAAACACTTCAATTTACAGCATT
1 TAAACACTTCAATTTACAGCATT
*
57605222 TAAACACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTACAGCA-TT
* *
57605246 T-AACA-TCTCAATTAACAACATT
1 TAAACACT-TCAATTTACAGCATT
* * * *
57605268 TATACACCT-AAATTACAGTGA-T
1 TAAACACTTCAATTTACAG-CATT
* * **
57605290 AAAACA-TCTCAATTTCCAGCAAC
1 TAAACACT-TCAATTTACAGCATT
* *
57605313 TAAACACTTCAATTTGCAGCACT
1 TAAACACTTCAATTTACAGCATT
**
57605336 TAAACACTTCAATTTACAATATT
1 TAAACACTTCAATTTACAGCATT
*
57605359 TAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
57605382 TAAACACTT
1 TAAACACTT
57605391 AATAAATTAA
Statistics
Matches: 1064, Mismatches: 230, Indels: 165
0.73 0.16 0.11
Matches are distributed among these distances:
18 14 0.01
20 2 0.00
21 5 0.00
22 144 0.14
23 848 0.80
24 51 0.05
ACGTcount: A:0.40, C:0.22, G:0.05, T:0.34
Consensus pattern (23 bp):
TAAACACTTCAATTTACAGCATT
Found at i:57604561 original size:206 final size:206
Alignment explanation
Indices: 57604013--57605121 Score: 1672
Period size: 206 Copynumber: 5.4 Consensus size: 206
57604003 TTTGTAGCAC
* * ** *
57604013 TTAAACACTTTAATTTACAACATTTAAACACTTCAATTTATAGCACTTTAACACTTTAATTTACA
1 TTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
* * *
57604078 ACATTTAAGCACTTCAATTTGCAGCACTTTAACATCTCAATTAACAATATTTATACCCCTCAATT
66 ACATTTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATT
* *
57604143 ACAGTGATAAAACATCTCAATTTCCAACAACTAAATACTTCAATTTGCAGCACTTAAACTATTCA
131 ACAGCGATAAAACATCTCAATTTCCAACAACTAAATACTTCAATTTGCAGCACTTAAACAATTCA
57604208 ATTTACAACAT
196 ATTTACAACAT
* *
57604219 TTAAACACTTAAATCT--A-C--TTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
1 TTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
* * * *
57604279 GCATTTAAACACTTCAATTTGTAGCAGTTTAACATCTCAATTAAAAACATTTATACACCTCAATT
66 ACATTTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATT
*
57604344 ACAGTGATAAAACATCTCAATTTCCAACAACTAAATACTTCAATTTGCAGCACTTAAACAATTCA
131 ACAGCGATAAAACATCTCAATTTCCAACAACTAAATACTTCAATTTGCAGCACTTAAACAATTCA
57604409 ATTTACAACAT
196 ATTTACAACAT
*
57604420 TTAAACACTTCAATTTAGAGCATTTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
1 TTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
* * *
57604485 ACATTTGAACACTTCAATTTGCATCACTTTAACATCTCAATTAACAACATTTATACACCCCAATT
66 ACATTTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATT
* *
57604550 ATAGCGATAAAACATCTCAATTTTCAACAACTAAATACTTCAATTTGCAGCACTTAAACAATTCA
131 ACAGCGATAAAACATCTCAATTTCCAACAACTAAATACTTCAATTTGCAGCACTTAAACAATTCA
57604615 ATTTACAACAT
196 ATTTACAACAT
* * ** *
57604626 TTAAACACTTCAATTTATAGCATTTACACACTTCAATTTATAGCACTTTAACACTTCAATTTATA
1 TTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
*
57604691 GCATTTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATT
66 ACATTTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATT
* * *
57604756 ACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCA
131 ACAGCGATAAAACATCTCAATTTCCAACAACTAAATACTTCAATTTGCAGCACTTAAACAATTCA
57604821 ATTTACAACAT
196 ATTTACAACAT
* * * *
57604832 TTAAACACTTCAATTTACTGCATTTAAACACTTCAATTTGTAGTACTTTAACACTTCAATTTATA
1 TTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
* * *
57604897 GCATTTAAACACTTCAATTTGCATCACTTTAAAATCTCAATTAACAACATTTATACACCTCAATT
66 ACATTTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATT
* * * * * * * *
57604962 ATAGCAATAAAACATCTCAATTTCTAGCAACTAAACACTTCAATTTACAACACTTAAACAATTAA
131 ACAGCGATAAAACATCTCAATTTCCAACAACTAAATACTTCAATTTGCAGCACTTAAACAATTCA
57605027 ATTTACAACAT
196 ATTTACAACAT
* * * * *
57605038 TTAAACACTTTAATTTATAACATTTATACACTTCAATTTGCAGCACTTTAACA-TCTCAATTAAC
1 TTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACACT-TCAATTTAC
* * *
57605102 AATATTTATACACCTCAATT
65 AACATTTAAACACTTCAATT
57605122 ACAGCGATAA
Statistics
Matches: 831, Mismatches: 66, Indels: 12
0.91 0.07 0.01
Matches are distributed among these distances:
201 186 0.22
203 2 0.00
204 2 0.00
205 1 0.00
206 640 0.77
ACGTcount: A:0.39, C:0.22, G:0.04, T:0.34
Consensus pattern (206 bp):
TTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
ACATTTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATT
ACAGCGATAAAACATCTCAATTTCCAACAACTAAATACTTCAATTTGCAGCACTTAAACAATTCA
ATTTACAACAT
Found at i:57604984 original size:160 final size:160
Alignment explanation
Indices: 57604566--57605390 Score: 818
Period size: 160 Copynumber: 5.2 Consensus size: 160
57604556 ATAAAACATC
* ** * * * *
57604566 TCAATTTTCAACAACTAAATACTTCAATTTGCAGCACTTAAACAAT-TCAATTTACAACATTTAA
1 TCAATTTACAACATTTAAACACTTCAATTTGCAGCACTTTAA-AATCTCAATTAACAACATTTAT
* * * * * * *
57604630 ACACTTCAATTTATAGCATTTACACA-CTTCAATTTATAGC-ACTTTAACACTTCAATTTATAGC
65 ACACCTCAA-TTATAGCAATAAAACATC-TCAATTTACAGCAAC-TAAACACTTCAATTTACAGC
* *
57604693 ATTTAAACACTTCAA-TTTGCAGCACTTT-AACA-T
127 ACTTAAACACTTCAATTTTACA--ACTTTAAACACT
* * * * * ** * **
57604726 CTCAATTAACAACATTTATACACCTCAA-TTACAGCGA--TAAAACATCTCAATTTCCAGCAACT
1 -TCAATTTACAACATTTAAACACTTCAATTTGCAGC-ACTTTAAA-ATCTCAATTAACAACATTT
* * * * * ** *
57604788 AAACACTTCAATT-TGCAGCACTTAAACA-CTTCAATTTACAACATTTAAACACTTCAATTTACT
63 ATACACCTCAATTAT--AGCAATAAAACATC-TCAATTTACAGCAACTAAACACTTCAATTTACA
* **
57604851 GCATTTAAACACTTCAATTTGTAGTACTTT-AACACT
125 GCACTTAAACACTTCAATTT-TACAACTTTAAACACT
* * *
57604887 TCAATTTATAGCATTTAAACACTTCAATTTGCATCACTTTAAAATCTCAATTAACAACATTTATA
1 TCAATTTACAACATTTAAACACTTCAATTTGCAGCACTTTAAAATCTCAATTAACAACATTTATA
*
57604952 CACCTCAATTATAGCAATAAAACATCTCAATTT-CTAGCAACTAAACACTTCAATTTACAACACT
66 CACCTCAATTATAGCAATAAAACATCTCAATTTAC-AGCAACTAAACACTTCAATTTACAGCACT
* *
57605016 TAAACAATT-AAATTTACAACATTTAAACACT
130 TAAACACTTCAATTTTACAAC-TTTAAACACT
* * * * *
57605047 TTAATTTATAACATTTATACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAATATTTATA
1 TCAATTTACAACATTTAAACACTTCAATTTGCAGCACTTTAAAATCTCAATTAACAACATTTATA
* * * * *
57605112 CACCTCAATTACAGCGATAAAGCATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTT
66 CACCTCAATTATAGCAATAAAACATCTCAATTTACAGCAACTAAACACTTCAATTTACAGCACTT
*
57605177 AAAAACTTCAA-TTTACAACATTTAAACACT
131 AAACACTTCAATTTTACAAC-TTTAAACACT
* *
57605207 TCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATA
1 TCAATTTACAACATTTAAACACTTCAATTTGCAGCACTTTAAAATCTCAATTAACAACATTTATA
* * ** * *
57605272 CACCTAAATTACAGTGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTT
66 CACCTCAATTATAGCAATAAAACATCTCAATTTACAGCAACTAAACACTTCAATTTACAGCACTT
*
57605337 AAACACTTCAA-TTTACAATATTTAAACACT
131 AAACACTTCAATTTTACAA-CTTTAAACACT
57605367 TCAATTTACAACATTTAAACACTT
1 TCAATTTACAACATTTAAACACTT
57605391 AATAAATTAA
Statistics
Matches: 569, Mismatches: 75, Indels: 41
0.83 0.11 0.06
Matches are distributed among these distances:
158 6 0.01
159 16 0.03
160 483 0.85
161 58 0.10
162 6 0.01
ACGTcount: A:0.40, C:0.22, G:0.04, T:0.33
Consensus pattern (160 bp):
TCAATTTACAACATTTAAACACTTCAATTTGCAGCACTTTAAAATCTCAATTAACAACATTTATA
CACCTCAATTATAGCAATAAAACATCTCAATTTACAGCAACTAAACACTTCAATTTACAGCACTT
AAACACTTCAATTTTACAACTTTAAACACT
Found at i:57605190 original size:206 final size:202
Alignment explanation
Indices: 57604013--57605374 Score: 1505
Period size: 206 Copynumber: 6.6 Consensus size: 202
57604003 TTTGTAGCAC
* * * ** *
57604013 TTAAACACTTTAATTTACAACATTTAAACACTTCAATTTATAGCACTTTAACACTTTAATTTACA
1 TTAAACACTTCAATTTATAGCATTTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
* * * *
57604078 ACATTTAAGCACTTCAATTTGCAGCACTTTAACATCTCAATTAACAATATTTATACCCCTCAATT
66 GCATTTAAACACTTCAATTTGCAGCA--TTAACATCTCAATTAACAACATTTATACACCTCAATT
* * * *
57604143 ACAGTGATAAAACATCTCAATTTCCAACAACTAAATACTTCAATTTGCAGCACTTAAACTATTCA
129 -TAG-CATAAAACATCTCAATTTCCAACAACTAAACACTTCAATTTGCAGCACTTAAACAATTCA
57604208 ATTTACAACAT
192 ATTTACAACAT
* *
57604219 TTAAACACTT-AA-ATCTA-C--TTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
1 TTAAACACTTCAATTTATAGCATTTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
* *
57604279 GCATTTAAACACTTCAATTTGTAGCAGTTTAACATCTCAATTAAAAACATTTATACACCTCAATT
66 GCATTTAAACACTTCAATTTGCAGCA--TTAACATCTCAATTAACAACATTTATACACCTCAATT
* * *
57604344 ACAGTGATAAAACATCTCAATTTCCAACAACTAAATACTTCAATTTGCAGCACTTAAACAATTCA
129 -TAG-CATAAAACATCTCAATTTCCAACAACTAAACACTTCAATTTGCAGCACTTAAACAATTCA
57604409 ATTTACAACAT
192 ATTTACAACAT
*
57604420 TTAAACACTTCAATTTAGAGCATTTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
1 TTAAACACTTCAATTTATAGCATTTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
* * * *
57604485 ACATTTGAACACTTCAATTTGCATCACTTTAACATCTCAATTAACAACATTTATACACCCCAATT
66 GCATTTAAACACTTCAATTTGCAGCA--TTAACATCTCAATTAACAACATTTATACACCTCAATT
* *
57604550 ATAGCGATAAAACATCTCAATTTTCAACAACTAAATACTTCAATTTGCAGCACTTAAACAATTCA
129 -TAGC-ATAAAACATCTCAATTTCCAACAACTAAACACTTCAATTTGCAGCACTTAAACAATTCA
57604615 ATTTACAACAT
192 ATTTACAACAT
* ** *
57604626 TTAAACACTTCAATTTATAGCATTTACACACTTCAATTTATAGCACTTTAACACTTCAATTTATA
1 TTAAACACTTCAATTTATAGCATTTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
57604691 GCATTTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATT
66 GCATTTAAACACTTCAATTTGCAGCA--TTAACATCTCAATTAACAACATTTATACACCTCAATT
* * *
57604756 ACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCA
129 -TAGC-ATAAAACATCTCAATTTCCAACAACTAAACACTTCAATTTGCAGCACTTAAACAATTCA
57604821 ATTTACAACAT
192 ATTTACAACAT
* * *
57604832 TTAAACACTTCAATTTACT-GCATTTAAACACTTCAATTTGTAGTACTTTAACACTTCAATTTAT
1 TTAAACACTTCAATTTA-TAGCATTTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTAC
* *
57604896 AGCATTTAAACACTTCAATTTGCATCACTTTAAAATCTCAATTAACAACATTTATACACCTCAAT
65 AGCATTTAAACACTTCAATTTGCAGCA--TTAACATCTCAATTAACAACATTTATACACCTCAAT
* * * * *
57604961 TATAGCAATAAAACATCTCAATTTCTAGCAACTAAACACTTCAATTTACAACACTTAAACAATTA
128 T-TAGC-ATAAAACATCTCAATTTCCAACAACTAAACACTTCAATTTGCAGCACTTAAACAATTC
57605026 AATTTACAACAT
191 AATTTACAACAT
* * * *
57605038 TTAAACACTTTAATTTATAACATTTATACACTTCAATTTGCAGCACTTTAACA-TCTCAATTAAC
1 TTAAACACTTCAATTTATAGCATTTAAACACTTCAATTTGCAGCACTTTAACACT-TCAATTTAC
** * * * * ** * ** * *
57605102 AATATTTATACACCTCAA-TTACAGCGATAAAGCATCTCAATTTCCAGCAACTAAACACTTCAAT
65 AGCATTTAAACACTTCAATTTGCAGC-ATTAA-CATCTCAATTAACAACATTTATACACCTCAAT
* ** * * *
57605166 TTGCAGCACTTAAAA-A-CTTCAATTTACAACATTTAAACACTTCAATTTACAGCATTTAAACAC
128 TT--AGCA--TAAAACATC-TCAATTTCCAACAACTAAACACTTCAATTTGCAGCACTTAAACAA
* *
57605229 TTCAATTTGCAGCACT
188 TTCAATTTACAACA-T
* * * * * * * * **
57605245 TT-AACA-TCTCAATTAACAACATTTATACACCT-AAATTACAGTGA-TAAAACA-TCTCAATTT
1 TTAAACACT-TCAATTTATAGCATTTAAACACTTCAATTTGCAG-CACTTTAACACT-TCAATTT
* ** * * * *
57605305 CCAGCAACTAAACACTTCAATTTGCAGCACTTAAACA-CTTCAATTTACAATATTTAAACACTTC
63 ACAGCATTTAAACACTTCAATTTGCAGCA-TT-AACATC-TCAATTAACAACATTTATACACCTC
57605369 AATTTA
125 AATTTA
57605375 CAACATTTAA
Statistics
Matches: 1023, Mismatches: 110, Indels: 48
0.87 0.09 0.04
Matches are distributed among these distances:
201 182 0.18
202 2 0.00
203 3 0.00
204 8 0.01
205 72 0.07
206 745 0.73
207 11 0.01
ACGTcount: A:0.40, C:0.22, G:0.04, T:0.34
Consensus pattern (202 bp):
TTAAACACTTCAATTTATAGCATTTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
GCATTTAAACACTTCAATTTGCAGCATTAACATCTCAATTAACAACATTTATACACCTCAATTTA
GCATAAAACATCTCAATTTCCAACAACTAAACACTTCAATTTGCAGCACTTAAACAATTCAATTT
ACAACAT
Found at i:57606629 original size:41 final size:41
Alignment explanation
Indices: 57606584--57606704 Score: 129
Period size: 41 Copynumber: 3.0 Consensus size: 41
57606574 AACATATTTG
*
57606584 TGGCATTTGGAATAAAAACGCCACTATTGCTACACTTTTAA
1 TGGCATTTGGAACAAAAACGCCACTATTGCTACACTTTTAA
* * **
57606625 TGGCATTTGGACCAAAAACGACACTATTGCT-CAACTTTTTG
1 TGGCATTTGGAACAAAAACGCCACTATTGCTAC-ACTTTTAA
* * * *
57606666 TGGCGTTTGCAACGAAAACGCCACTACTGCTTAC-CTTTT
1 TGGCATTTGGAACAAAAACGCCACTATTGC-TACACTTTT
57606705 GCACTGTTTT
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
40 1 0.02
41 63 0.95
42 1 0.02
43 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (41 bp):
TGGCATTTGGAACAAAAACGCCACTATTGCTACACTTTTAA
Found at i:57607150 original size:14 final size:14
Alignment explanation
Indices: 57607131--57607214 Score: 82
Period size: 14 Copynumber: 6.0 Consensus size: 14
57607121 TTATCAAAAC
57607131 CCTTAAACACTAAA
1 CCTTAAACACTAAA
57607145 CCTTAAACACTAAA
1 CCTTAAACACTAAA
* * *
57607159 CCTAAAACCCAAAA
1 CCTTAAACACTAAA
57607173 CCTTAAACTA-TAAA
1 CCTTAAAC-ACTAAA
* * *
57607187 TCATAAACCCTAAA
1 CCTTAAACACTAAA
57607201 -CTCTAAACACTAAA
1 CCT-TAAACACTAAA
57607215 ATCCTAAACT
Statistics
Matches: 56, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
13 1 0.02
14 55 0.98
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.20
Consensus pattern (14 bp):
CCTTAAACACTAAA
Found at i:57607166 original size:21 final size:20
Alignment explanation
Indices: 57607134--57607223 Score: 58
Period size: 21 Copynumber: 4.2 Consensus size: 20
57607124 TCAAAACCCT
*
57607134 TAAACACTAAACCTTAAACAC
1 TAAACACTAAACCTAAAAC-C
*
57607155 TAAAC-CTAAAACCCAAAACC
1 TAAACACT-AAACCTAAAACC
* *
57607175 TTAAACTA-TAAATCATAAACCC
1 -TAAAC-ACTAAA-CCTAAAACC
*
57607197 TAAACTCTAAACACTAAAATCC
1 TAAACACTAAAC-CTAAAA-CC
57607219 TAAAC
1 TAAAC
57607224 TATAAAACCA
Statistics
Matches: 53, Mismatches: 8, Indels: 15
0.70 0.11 0.20
Matches are distributed among these distances:
20 4 0.08
21 35 0.66
22 14 0.26
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.20
Consensus pattern (20 bp):
TAAACACTAAACCTAAAACC
Found at i:57608048 original size:41 final size:40
Alignment explanation
Indices: 57608003--57608139 Score: 132
Period size: 41 Copynumber: 3.4 Consensus size: 40
57607993 TATAATAATT
* * *
57608003 TTTTGTGGCATTTTTGTCATAAACACCGCTAATACTAGACA
1 TTTTGTGGCATTTTTCTCACAAACACCGCTAAT-CTAGACC
* ** * *
57608044 TTTTGCGGTGTTTTTCTCACAAACACCGCTAATGTCAAACC
1 TTTTGTGGCATTTTTCTCACAAACACCGCTAATCT-AGACC
* * *
57608085 TTTT-TCAGCGTTTTTCTCACAAACACCGCTAATTCCAGACC
1 TTTTGT-GGCATTTTTCTCACAAACACCGCTAA-TCTAGACC
57608126 TTTTGTGGCATTTT
1 TTTTGTGGCATTTT
57608140 CTGATTAGCG
Statistics
Matches: 76, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
40 1 0.01
41 73 0.96
42 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (40 bp):
TTTTGTGGCATTTTTCTCACAAACACCGCTAATCTAGACC
Found at i:57612134 original size:11 final size:10
Alignment explanation
Indices: 57612061--57612130 Score: 59
Period size: 10 Copynumber: 6.9 Consensus size: 10
57612051 TCGAGTTCCA
*
57612061 TTCAGCTCAA
1 TTCAGCTCAT
* *
57612071 ATCAGCTCAC
1 TTCAGCTCAT
* *
57612081 TTGAGCTTAT
1 TTCAGCTCAT
*
57612091 TTCAGCTCGT
1 TTCAGCTCAT
*
57612101 TTGAGCTCAT
1 TTCAGCTCAT
*
57612111 TTCAGTTTCAT
1 TTCAG-CTCAT
57612122 TTCAGCTCA
1 TTCAGCTCA
57612131 ATTTTTTAAT
Statistics
Matches: 45, Mismatches: 14, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
10 36 0.80
11 9 0.20
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (10 bp):
TTCAGCTCAT
Found at i:57614632 original size:11 final size:11
Alignment explanation
Indices: 57614605--57614711 Score: 57
Period size: 11 Copynumber: 9.6 Consensus size: 11
57614595 ATTCTAAAAA
57614605 TAATATT-ATT
1 TAATATTAATT
57614615 T--TATTAATT
1 TAATATTAATT
*
57614624 TAATATTAAAT
1 TAATATTAATT
57614635 TAA-ATTAATT
1 TAATATTAATT
*
57614645 TAATACTAAAGTGAT
1 TAATA-TTAA-T--T
*
57614660 T-ATCTTAATAT
1 TAATATTAAT-T
57614671 TAA-ATTAAATT
1 TAATATT-AATT
57614682 TAATATTAATAT
1 TAATATTAAT-T
*
57614694 CAA-ATTTAATT
1 TAATA-TTAATT
57614705 TAATATT
1 TAATATT
57614712 TATCTTATAG
Statistics
Matches: 75, Mismatches: 8, Indels: 27
0.68 0.07 0.25
Matches are distributed among these distances:
8 4 0.05
9 4 0.05
10 10 0.13
11 29 0.39
12 20 0.27
13 4 0.05
14 2 0.03
15 2 0.03
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.50
Consensus pattern (11 bp):
TAATATTAATT
Found at i:57614708 original size:17 final size:18
Alignment explanation
Indices: 57614664--57614710 Score: 71
Period size: 17 Copynumber: 2.7 Consensus size: 18
57614654 AGTGATTATC
*
57614664 TTAATATTAA-ATTAAAT
1 TTAATATTAATATCAAAT
57614681 TTAATATTAATATCAAAT
1 TTAATATTAATATCAAAT
57614699 TTAAT-TTAATAT
1 TTAATATTAATAT
57614711 TTATCTTATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
17 17 0.61
18 11 0.39
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
TTAATATTAATATCAAAT
Found at i:57617254 original size:18 final size:18
Alignment explanation
Indices: 57617217--57617279 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
57617207 ATTGTGCGAG
*
57617217 CCCATATAGGTATGCGAA
1 CCCATATAGGTATGCAAA
**
57617235 CCCATATATTTATGCAAA
1 CCCATATAGGTATGCAAA
* *
57617253 CCCTATCAAAGG-ATGAAAA
1 CCC-AT-ATAGGTATGCAAA
57617272 CCCATATA
1 CCCATATA
57617280 TTCATGTGAT
Statistics
Matches: 35, Mismatches: 8, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
17 2 0.06
18 20 0.57
19 11 0.31
20 2 0.06
ACGTcount: A:0.40, C:0.24, G:0.13, T:0.24
Consensus pattern (18 bp):
CCCATATAGGTATGCAAA
Found at i:57621375 original size:46 final size:47
Alignment explanation
Indices: 57621269--57621440 Score: 169
Period size: 46 Copynumber: 3.7 Consensus size: 47
57621259 GGTCATTTGT
* * * *
57621269 GTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGGGACGA
1 GTGAGCCAGTGTAAGACCATGTCTGGGACAT-GCATTGGCCTCGAGA--A
* *
57621319 GTGA--TAGTGTAAGA-CATGTCTGGGACATACATTGGCCTCGAGAA
1 GTGAGCCAGTGTAAGACCATGTCTGGGACATGCATTGGCCTCGAGAA
57621363 GTGAGCCAGTGTAAGA-CATGTCTGGGACATGCATTGG-CTACGAG-A
1 GTGAGCCAGTGTAAGACCATGTCTGGGACATGCATTGGCCT-CGAGAA
* *
57621408 -TGATTGTCAGTCTAAGACCATGTCTGGGACATG
1 GTGA--GCCAGTGTAAGACCATGTCTGGGACATG
57621441 GCTTCGACTT
Statistics
Matches: 108, Mismatches: 8, Indels: 15
0.82 0.06 0.11
Matches are distributed among these distances:
44 8 0.07
45 3 0.03
46 54 0.50
47 29 0.27
48 10 0.09
50 4 0.04
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (47 bp):
GTGAGCCAGTGTAAGACCATGTCTGGGACATGCATTGGCCTCGAGAA
Found at i:57621431 original size:93 final size:94
Alignment explanation
Indices: 57621269--57621439 Score: 233
Period size: 93 Copynumber: 1.8 Consensus size: 94
57621259 GGTCATTTGT
* * * *
57621269 GTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGGGACGAGTGATAGTGTAAGAC
1 GTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGACGAGTGATAGTCTAAGAC
57621334 ATGTCTGGGACATACATTGGCCTCGAGAA
66 ATGTCTGGGACATACATTGGCCTCGAGAA
* *
57621363 GTGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATTGGC-TACGAGATGATTG-TCAGTCTAAG
1 GTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCAT-CGAGACGAGTGAT-AGTCTAAG
57621424 ACCATGTCTGGGACAT
64 A-CATGTCTGGGACAT
57621440 GGCTTCGACT
Statistics
Matches: 68, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
91 2 0.03
92 23 0.34
93 28 0.41
94 15 0.22
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (94 bp):
GTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGACGAGTGATAGTCTAAGAC
ATGTCTGGGACATACATTGGCCTCGAGAA
Found at i:57621470 original size:93 final size:93
Alignment explanation
Indices: 57621272--57621496 Score: 215
Period size: 93 Copynumber: 2.4 Consensus size: 93
57621262 CATTTGTGTG
* * * *
57621272 AGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGGGACGAGTGATAGTGTAAGACATG
1 AGCTAGTGTAAGA-CATGTCTGGGACATAGCATTGGCATCGAGACGAGTGATAGTCTAAGACATG
* * *
57621337 TCTGGGACATACATTGGCCTCGAGAAGTG
65 TCTGGGACATACATTCGACTCGAGAAGTA
* * *
57621366 AGCCAGTGTAAGACATGTCTGGGACAT-GCATTGGC-TACGAGATGATTG-TCAGTCTAAGACCA
1 AGCTAGTGTAAGACATGTCTGGGACATAGCATTGGCAT-CGAGACGAGTGAT-AGTCTAAGA-CA
* * *
57621428 TGTCTGGGACATGGC-TTCGACTTGAGATGTA
63 TGTCTGGGACAT-ACATTCGACTCGAGAAGTA
* * * *
57621459 AGCTAGAGTAAGACTGTGTCTCGGACATAGCATCGGCA
1 AGCTAGTGTAAGAC-ATGTCTGGGACATAGCATTGGCA
57621497 CCTTACCCCA
Statistics
Matches: 107, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
91 2 0.02
92 23 0.21
93 51 0.48
94 24 0.22
95 7 0.07
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.25
Consensus pattern (93 bp):
AGCTAGTGTAAGACATGTCTGGGACATAGCATTGGCATCGAGACGAGTGATAGTCTAAGACATGT
CTGGGACATACATTCGACTCGAGAAGTA
Found at i:57623987 original size:10 final size:10
Alignment explanation
Indices: 57623972--57624019 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
57623962 GAACATGTTG
57623972 AATTTTAATT
1 AATTTTAATT
*
57623982 AATTTTATATCA
1 AATTTTA-AT-T
*
57623994 AATTTTGATT
1 AATTTTAATT
*
57624004 AATTTTTATT
1 AATTTTAATT
57624014 AATTTT
1 AATTTT
57624020 GACATATTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 22 0.69
11 4 0.12
12 6 0.19
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (10 bp):
AATTTTAATT
Found at i:57624004 original size:22 final size:20
Alignment explanation
Indices: 57623972--57624021 Score: 64
Period size: 22 Copynumber: 2.4 Consensus size: 20
57623962 GAACATGTTG
*
57623972 AATTTTAATTAATTTTATATCA
1 AATTTTGATTAATTTT-TAT-A
*
57623994 AATTTTGATTAATTTTTATT
1 AATTTTGATTAATTTTTATA
57624014 AATTTTGA
1 AATTTTGA
57624022 CATATTTGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 8 0.31
21 3 0.12
22 15 0.58
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (20 bp):
AATTTTGATTAATTTTTATA
Found at i:57625873 original size:19 final size:19
Alignment explanation
Indices: 57625849--57625887 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
57625839 ATAAAATATG
57625849 TTTTTTTTCTAACATATCC
1 TTTTTTTTCTAACATATCC
57625868 TTTTTTTTCTAACATATCC
1 TTTTTTTTCTAACATATCC
57625887 T
1 T
57625888 CATCAGCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.21, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTTTTTTCTAACATATCC
Found at i:57634571 original size:37 final size:39
Alignment explanation
Indices: 57634530--57634610 Score: 96
Period size: 39 Copynumber: 2.1 Consensus size: 39
57634520 GATGAGGTAT
* *
57634530 TGGGTACCAACT-TT-CTTCG-GCTTTGCCGATGAGACAC
1 TGGGTACCAACTATTGCTTCGAACTAT-CCGATGAGACAC
**
57634567 TGGGTGTCAACTATTGCTTCGAACTATCCGATGAGACAC
1 TGGGTACCAACTATTGCTTCGAACTATCCGATGAGACAC
57634606 TGGGT
1 TGGGT
57634611 GCCATTCTGG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
37 10 0.27
38 2 0.05
39 22 0.59
40 3 0.08
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (39 bp):
TGGGTACCAACTATTGCTTCGAACTATCCGATGAGACAC
Found at i:57644340 original size:40 final size:40
Alignment explanation
Indices: 57644257--57644519 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
57644247 TTGAATGCTG
* * * * * *
57644257 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
57644297 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
57644337 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
57644377 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
57644417 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
57644457 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
57644496 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
57644520 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:57644539 original size:79 final size:80
Alignment explanation
Indices: 57644296--57644554 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
57644286 AAGTGAATAT
* * * * * *
57644296 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
57644360 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
57644376 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
57644441 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
57644456 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
57644520 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
57644535 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
57644555 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:57650552 original size:47 final size:47
Alignment explanation
Indices: 57650484--57650698 Score: 180
Period size: 47 Copynumber: 4.7 Consensus size: 47
57650474 TTCGTGTGTA
*
57650484 CCAGTGTAAGA-CATGTCTGGGACATGCATCGGCCACATTATGAGTG
1 CCAGTGTAAGAGCATGTCTGGGACATGCATCGGCCACATGATGAGTG
* * *
57650530 CCAGTGTAAGAGCATGTCTGGGACATGGCATTGGCGTAGA-GATGAGTG
1 CCAGTGTAAGAGCATGTCTGGGACAT-GCATCGGC-CACATGATGAGTG
* * **
57650578 CCAGTGTAAG-TCATGTCTGGGACATGCATCAGCGTCGATGATGA-TAG
1 CCAGTGTAAGAGCATGTCTGGGACATGCATCGGCCAC-ATGATGAGT-G
* * *
57650625 CCAGTGTAAGATG--TGTCTGGGACATGTATCGGCTA-A-GA-GTCGTG
1 CCAGTGTAAGA-GCATGTCTGGGACATGCATCGGCCACATGATG-AGTG
* * *
57650669 CTAGTGTAAGA-CATGTCCGAGACATGCATC
1 CCAGTGTAAGAGCATGTCTGGGACATGCATC
57650699 AGTACGTATA
Statistics
Matches: 137, Mismatches: 20, Indels: 26
0.75 0.11 0.14
Matches are distributed among these distances:
43 1 0.01
44 27 0.20
45 2 0.01
46 19 0.14
47 62 0.45
48 24 0.18
49 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (47 bp):
CCAGTGTAAGAGCATGTCTGGGACATGCATCGGCCACATGATGAGTG
Found at i:57650645 original size:94 final size:90
Alignment explanation
Indices: 57650484--57650700 Score: 242
Period size: 94 Copynumber: 2.4 Consensus size: 90
57650474 TTCGTGTGTA
* *
57650484 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGTGCCAGTGTAAGAGCATGTCT
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGAGTGCCAGTGTAAGAG-ATGTCT
*
57650549 GGGACATGGCATTGGCGT-AGAGATGAGTG
65 GGGACAT-GCATCGGC-TAAGAG-T-AGTG
* **
57650578 CCAGTGTAAGTCATGTCTGGGACATGCATCAGCGTCGATGATGA-TAGCCAGTGTAAGATG-TGT
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATGATGAGT-GCCAGTGTAAGA-GATGT
* *
57650641 CTGGGACATGTATCGGCTAAGAGTCGTG
63 CTGGGACATGCATCGGCTAAGAGTAGTG
* * *
57650669 CTAGTGTAAGACATGTCCGAGACATGCATCAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCAG
57650701 TACGTATATA
Statistics
Matches: 107, Mismatches: 12, Indels: 11
0.82 0.09 0.08
Matches are distributed among these distances:
91 31 0.29
92 2 0.02
93 10 0.09
94 45 0.42
95 18 0.17
96 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.24
Consensus pattern (90 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGAGTGCCAGTGTAAGAGATGTCTG
GGACATGCATCGGCTAAGAGTAGTG
Found at i:57651603 original size:54 final size:53
Alignment explanation
Indices: 57651510--57651643 Score: 144
Period size: 54 Copynumber: 2.5 Consensus size: 53
57651500 GCATTTAAAA
* * * * *
57651510 TTTTAAGTCAGTTTAGTACACGGGTAGGCCACATAGGCGTGTGTCATGGCCGTG
1 TTTTAAGTCAGTTT-GTACACGGGCAAGCCACACAGGCGTGTGTCATAGCCATG
* *
57651564 -TTTAATGTCAGTGTTGTACACGGGCAAGCCATACGGGCGTGTGTCATAGCCATG
1 TTTTAA-GTCAGT-TTGTACACGGGCAAGCCACACAGGCGTGTGTCATAGCCATG
*
57651618 TTTTAAAGTCAGTATTGCACACGGGC
1 TTTT-AAGTCAGT-TTGTACACGGGC
57651644 TAAGGGCACG
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
53 5 0.07
54 38 0.57
55 22 0.33
56 2 0.03
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (53 bp):
TTTTAAGTCAGTTTGTACACGGGCAAGCCACACAGGCGTGTGTCATAGCCATG
Found at i:57651741 original size:18 final size:18
Alignment explanation
Indices: 57651667--57651742 Score: 61
Period size: 18 Copynumber: 4.4 Consensus size: 18
57651657 GTTTCCCAAG
*
57651667 CCACACGGGTGTGTGTGA
1 CCACACGAGTGTGTGTGA
* * *
57651685 CCAGACGGGCGTGTGTGA
1 CCACACGAGTGTGTGTGA
* *
57651703 CCACA--AG-GTCT-TTA
1 CCACACGAGTGTGTGTGA
57651717 TCCACACGAGTGTGTGTGA
1 -CCACACGAGTGTGTGTGA
57651736 CCACACG
1 CCACACG
57651743 GTCTTTATCC
Statistics
Matches: 45, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
14 2 0.04
15 8 0.18
16 1 0.02
17 2 0.04
18 30 0.67
19 2 0.04
ACGTcount: A:0.21, C:0.26, G:0.32, T:0.21
Consensus pattern (18 bp):
CCACACGAGTGTGTGTGA
Found at i:57651756 original size:15 final size:15
Alignment explanation
Indices: 57651703--57651758 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
57651693 GCGTGTGTGA
*
57651703 CCACAAGGTCTTTAT
1 CCACACGGTCTTTAT
*
57651718 CCACACGAGTGTGTGTGA-
1 CCACACG-GTCT-T-T-AT
57651736 CCACACGGTCTTTAT
1 CCACACGGTCTTTAT
57651751 CCACACGG
1 CCACACGG
57651759 GCGTGTGAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 10
0.72 0.07 0.22
Matches are distributed among these distances:
14 1 0.03
15 15 0.45
16 4 0.12
17 4 0.12
18 8 0.24
19 1 0.03
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.25
Consensus pattern (15 bp):
CCACACGGTCTTTAT
Found at i:57651765 original size:33 final size:33
Alignment explanation
Indices: 57651689--57651765 Score: 127
Period size: 33 Copynumber: 2.3 Consensus size: 33
57651679 GTGTGACCAG
57651689 ACGGGCGTGTGTGACCACAAGGTCTTTATCCAC
1 ACGGGCGTGTGTGACCACAAGGTCTTTATCCAC
* * *
57651722 ACGAGTGTGTGTGACCACACGGTCTTTATCCAC
1 ACGGGCGTGTGTGACCACAAGGTCTTTATCCAC
57651755 ACGGGCGTGTG
1 ACGGGCGTGTG
57651766 AAGCTTTAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (33 bp):
ACGGGCGTGTGTGACCACAAGGTCTTTATCCAC
Found at i:57658065 original size:47 final size:45
Alignment explanation
Indices: 57657953--57658170 Score: 226
Period size: 47 Copynumber: 4.7 Consensus size: 45
57657943 GATTTCTTGT
* * * **
57657953 GTGCCAGTGTAAGACATGTATGGGACATGCATCAGCCATATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC-GGCGTAAGATGA
57657999 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCGTA-AGATGA
* * * *
57658047 GTGCCAGTGTAAGACATGTTTGGGATATGCATCGGCCT-CGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTAAGATGA
*
57658091 TGATAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-TAAGA-GTC
1 -G-T-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTAAGATG-A
* * *
57658138 GTGCTAGTGTAAAACATGTCTGAGACATGCATC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC
57658171 AAAACGTATA
Statistics
Matches: 148, Mismatches: 16, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
44 33 0.22
45 2 0.01
46 27 0.18
47 63 0.43
48 23 0.16
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (45 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTAAGATGA
Found at i:57658114 original size:94 final size:93
Alignment explanation
Indices: 57657953--57658223 Score: 277
Period size: 94 Copynumber: 2.9 Consensus size: 93
57657943 GATTTCTTGT
*
57657953 GTGCCAGTGTAAGACATGTATGGGACATGCATCAGCCATATTATGAGTGCCAGTGTAAGACCATG
1 GTGCCAGTGTAAGACATGTATGGGACATGCATCAGCCATATGATGAGTGCCAGTGTAAGACCATG
57658018 TCTGGGACATGGCATCGGCGTAGAGATGA
66 TCTGGGACAT-GCATCGGCGTAGAGATGA
* * *
57658047 GTGCCAGTGTAAGACATGTTTGGGATATGCATCGGCC-TCGATGATGA-TAGCCAGTGTAAGA-C
1 GTGCCAGTGTAAGACATGTATGGGACATGCATCAGCCAT--ATGATGAGT-GCCAGTGTAAGACC
*
57658109 ATGTCTGGGACATGCATCGGC-TA-AGA-GTC
63 ATGTCTGGGACATGCATCGGCGTAGAGATG-A
* * * * * * * * * *
57658138 GTGCTAGTGTAAAACATGTCTGAGACATGCATCAAAACGTATATG-CGAGAGCTAGTATAAGACC
1 GTGCCAGTGTAAGACATGTATGGGACATGCATC--AGC-CATATGATGAGTGCCAGTGTAAGACC
57658202 ATGTCTGGGACATGGCATCGGC
63 ATGTCTGGGACAT-GCATCGGC
57658224 ACTTATCCCA
Statistics
Matches: 149, Mismatches: 17, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
90 1 0.01
91 31 0.21
92 14 0.09
93 27 0.18
94 57 0.38
95 19 0.13
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (93 bp):
GTGCCAGTGTAAGACATGTATGGGACATGCATCAGCCATATGATGAGTGCCAGTGTAAGACCATG
TCTGGGACATGCATCGGCGTAGAGATGA
Found at i:57659064 original size:55 final size:54
Alignment explanation
Indices: 57658980--57659110 Score: 194
Period size: 55 Copynumber: 2.4 Consensus size: 54
57658970 GCACTTAAAA
*
57658980 TTTT-AAGTCAGTTTAGTACACGGGTAGGCCACA-GAGGCGTGTGTCATGGCCGTG
1 TTTTAAAGTCAGTTT-GTACACGGGCAGGCCACACG-GGCGTGTGTCATGGCCGTG
57659034 TTTTAAAGTCAGTCTTGTACACGGGCAGGCCACACGGGCGTGTGTCATGGCCGTG
1 TTTTAAAGTCAGT-TTGTACACGGGCAGGCCACACGGGCGTGTGTCATGGCCGTG
*
57659089 TTTTAAAGTCAGTGTTGCACAC
1 TTTTAAAGTCAGT-TTGTACAC
57659111 AGGCTAAGGG
Statistics
Matches: 71, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
54 4 0.06
55 64 0.90
56 3 0.04
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (54 bp):
TTTTAAAGTCAGTTTGTACACGGGCAGGCCACACGGGCGTGTGTCATGGCCGTG
Found at i:57663573 original size:35 final size:35
Alignment explanation
Indices: 57663527--57663615 Score: 144
Period size: 35 Copynumber: 2.5 Consensus size: 35
57663517 TTTGGTTGGG
57663527 AAATGGTCTACTAGCTCTATGGAA-CGACATCACAA
1 AAATGGTCTACTAGCTCTAT-GAAGCGACATCACAA
* *
57663562 AAATGGTCTACTGGCTCTATGAAGCGACATTACAA
1 AAATGGTCTACTAGCTCTATGAAGCGACATCACAA
57663597 AAATGGTCTACTAGCTCTA
1 AAATGGTCTACTAGCTCTA
57663616 CAGAGTGACA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
34 3 0.06
35 47 0.94
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (35 bp):
AAATGGTCTACTAGCTCTATGAAGCGACATCACAA
Found at i:57663636 original size:35 final size:35
Alignment explanation
Indices: 57663596--57663673 Score: 111
Period size: 35 Copynumber: 2.2 Consensus size: 35
57663586 CGACATTACA
57663596 AAAATGGTCTACTAGCTCTACAGAGTGACACCATG
1 AAAATGGTCTACTAGCTCTACAGAGTGACACCATG
* * * * *
57663631 GAAATGGTCTATTGGCTCTATAGAGTGACACTATG
1 AAAATGGTCTACTAGCTCTACAGAGTGACACCATG
57663666 AAAATGGT
1 AAAATGGT
57663674 TTTTTGACTC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (35 bp):
AAAATGGTCTACTAGCTCTACAGAGTGACACCATG
Found at i:57666391 original size:46 final size:46
Alignment explanation
Indices: 57666341--57666516 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
57666331 TGGTTGAGCA
57666341 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57666387 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
57666432 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
57666480 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57666517 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:57666497 original size:93 final size:93
Alignment explanation
Indices: 57666338--57666508 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
57666328 GGATGGTTGA
* *
57666338 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57666403 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
57666431 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57666496 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
57666509 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:57672694 original size:42 final size:43
Alignment explanation
Indices: 57672603--57672697 Score: 106
Period size: 42 Copynumber: 2.2 Consensus size: 43
57672593 GTCCGAGACG
* *
57672603 TGGTCTTACATGTAATCAAACATCGATGCCACTGTCCTAGACA
1 TGGTCTTACATGGAATCAAACATCGATGCCACTGTCCTAAACA
* * *
57672646 GGGTCTTACATGGAATCAAATA-CGATGTCGA-TGT-CTCAAACA
1 TGGTCTTACATGGAATCAAACATCGATG-CCACTGTCCT-AAACA
57672688 TGGTCTTACA
1 TGGTCTTACA
57672698 CATAAAACAA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
41 2 0.05
42 21 0.48
43 21 0.48
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (43 bp):
TGGTCTTACATGGAATCAAACATCGATGCCACTGTCCTAAACA
Found at i:57678526 original size:28 final size:27
Alignment explanation
Indices: 57678462--57678641 Score: 279
Period size: 28 Copynumber: 6.6 Consensus size: 27
57678452 ATATTAAGTC
* *
57678462 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
57678489 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
57678517 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
57678544 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
57678572 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
57678600 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
57678627 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57678642 GCACAATTTA
Statistics
Matches: 143, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
27 66 0.46
28 76 0.53
29 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:57678546 original size:55 final size:55
Alignment explanation
Indices: 57678462--57678641 Score: 299
Period size: 55 Copynumber: 3.3 Consensus size: 55
57678452 ATATTAAGTC
* * *
57678462 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
57678517 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
* *
57678572 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATATTCA-ATT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCATACT
57678627 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57678642 GCACAATTTA
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
55 92 0.77
56 27 0.23
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
Found at i:57678601 original size:83 final size:82
Alignment explanation
Indices: 57678462--57678641 Score: 297
Period size: 83 Copynumber: 2.2 Consensus size: 82
57678452 ATATTAAGTC
* * *
57678462 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
57678527 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
*
57678544 CGCACACTTAGTGCTACATAATCATACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAATCA-ACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
* *
57678609 AGTGCTACATATTCAATT
65 AGTGCTACATAGTCAACT
57678627 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57678642 GCACAATTTA
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
82 22 0.24
83 69 0.76
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAACT
Found at i:57692772 original size:42 final size:43
Alignment explanation
Indices: 57692681--57692775 Score: 106
Period size: 42 Copynumber: 2.2 Consensus size: 43
57692671 GTCCGAGACG
* *
57692681 TGGTCTTACATGTAATCAAACATCGATGCCACTGTCCTAGACA
1 TGGTCTTACATGGAATCAAACATCGATGCCACTGTCCTAAACA
* * *
57692724 GGGTCTTACATGGAATCAAATA-CGATGTCGA-TGT-CTCAAACA
1 TGGTCTTACATGGAATCAAACATCGATG-CCACTGTCCT-AAACA
57692766 TGGTCTTACA
1 TGGTCTTACA
57692776 CATGAAACAG
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
41 2 0.05
42 21 0.48
43 21 0.48
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (43 bp):
TGGTCTTACATGGAATCAAACATCGATGCCACTGTCCTAAACA
Found at i:57698535 original size:40 final size:40
Alignment explanation
Indices: 57698473--57698699 Score: 310
Period size: 40 Copynumber: 5.7 Consensus size: 40
57698463 CAATTGAGGA
* *
57698473 TTATATCCGGGTTAAGTCCCGAAGGCATTCATGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * **
57698513 TTATTTTCGGGTTAAGTCCCGAAGGCTTTCGTTTTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
57698553 TTATTCCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
57698593 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGTTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * *
57698633 CTATTTCCAGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
** * * *
57698673 TTACATCCGGGCTAAATCCTGAAGGCA
1 TTATTTCCGGGTTAAGTCCCGAAGGCA
57698700 ATTGGGTTGG
Statistics
Matches: 163, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 163 1.00
ACGTcount: A:0.18, C:0.20, G:0.28, T:0.35
Consensus pattern (40 bp):
TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:57699793 original size:42 final size:43
Alignment explanation
Indices: 57699702--57699796 Score: 106
Period size: 42 Copynumber: 2.2 Consensus size: 43
57699692 GTCCGAGACG
* *
57699702 TGGTCTTACATGTAATCAAACATCGATGCCACTGTCCTAGACA
1 TGGTCTTACATGGAATCAAACATCGATGCCACTGTCCTAAACA
* * *
57699745 GGGTCTTACATGGAATCAAATA-CGATGTCGA-TGT-CTCAAACA
1 TGGTCTTACATGGAATCAAACATCGATG-CCACTGTCCT-AAACA
57699787 TGGTCTTACA
1 TGGTCTTACA
57699797 CATGAAACAG
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
41 2 0.05
42 21 0.48
43 21 0.48
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (43 bp):
TGGTCTTACATGGAATCAAACATCGATGCCACTGTCCTAAACA
Found at i:57702064 original size:20 final size:20
Alignment explanation
Indices: 57702024--57702064 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
57702014 GTATGTATTT
57702024 TGAAGTTTCTTGATAGATTA
1 TGAAGTTTCTTGATAGATTA
*
57702044 TGAATGTTTGTTGATAG-TTA
1 TGAA-GTTTCTTGATAGATTA
57702064 T
1 T
57702065 ACAAGTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.27, C:0.02, G:0.22, T:0.49
Consensus pattern (20 bp):
TGAAGTTTCTTGATAGATTA
Found at i:57702072 original size:20 final size:21
Alignment explanation
Indices: 57702026--57702072 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
57702016 ATGTATTTTG
57702026 AAGTTTCTTGATAGATTATGA
1 AAGTTTCTTGATAGATTATGA
* *
57702047 ATGTTTGTTGATAG-TTAT-A
1 AAGTTTCTTGATAGATTATGA
57702066 CAAGTTT
1 -AAGTTT
57702073 TGTTAAGTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 1 0.05
20 9 0.41
21 12 0.55
ACGTcount: A:0.30, C:0.04, G:0.19, T:0.47
Consensus pattern (21 bp):
AAGTTTCTTGATAGATTATGA
Found at i:57708222 original size:42 final size:44
Alignment explanation
Indices: 57708140--57708232 Score: 102
Period size: 42 Copynumber: 2.2 Consensus size: 44
57708130 TCTTAAATGT
* * * *
57708140 AATCAAATATCGATGCCACTGTCTCAAGCAGGGTCTTACACG-A
1 AATCAGATATCGATGCCACTGTCCCAAACAGGGTCATACACGTA
*
57708183 AATCAGATA-CGATGCCGA-TGTCCCAAACATGGTCATACACGTA
1 AATCAGATATCGATGCC-ACTGTCCCAAACAGGGTCATACACGTA
*
57708226 AAACAGA
1 AATCAGA
57708233 ATTTGATGCC
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
42 26 0.62
43 16 0.38
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.20
Consensus pattern (44 bp):
AATCAGATATCGATGCCACTGTCCCAAACAGGGTCATACACGTA
Found at i:57712075 original size:31 final size:31
Alignment explanation
Indices: 57712037--57712097 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
57712027 AAAGCCAAAC
*
57712037 CAAATAAGCACTTTAACAAGTAGCAGGCAAT
1 CAAATAAGCACTTTAACAAGTAGCAAGCAAT
57712068 CAAATAAGCACTTTAACAAGTAGCAAGCAA
1 CAAATAAGCACTTTAACAAGTAGCAAGCAA
57712098 CTTTCACATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.48, C:0.20, G:0.15, T:0.18
Consensus pattern (31 bp):
CAAATAAGCACTTTAACAAGTAGCAAGCAAT
Found at i:57715191 original size:45 final size:45
Alignment explanation
Indices: 57715093--57715403 Score: 414
Period size: 45 Copynumber: 7.0 Consensus size: 45
57715083 CTGAATTCAT
* * * * *
57715093 TCACCGGCATT-TTGCCTGCCAGGCTCGAA-GCTCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* **
57715135 TCACCGGCATTATAGCCTGCTAGACTCAAAGGCTTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
57715180 TCACCGACATTATAGCCTGCTAGGCTCAAAGGCCCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCC-GAATAGTATC
57715226 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
57715271 TCATCGGCATTATAGCCTGCTTGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * * *
57715316 TTACCGGCATTATAGCCTGCTATGTTCAAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
57715361 TCACCGGTATTATAGCCTGCTAGGCTCAAAAGCCCAAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
57715404 CTGTACGATA
Statistics
Matches: 239, Mismatches: 25, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
42 11 0.05
43 14 0.06
44 4 0.02
45 165 0.69
46 45 0.19
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:57716247 original size:25 final size:25
Alignment explanation
Indices: 57716219--57716286 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
57716209 ACTTATTCGG
* *
57716219 AAATAATAAGGGCAAATTTCACCGA
1 AAATAATAAGAGCAAATTTAACCGA
* *
57716244 AAATATTAAGAGCAAATTTAACCGG
1 AAATAATAAGAGCAAATTTAACCGA
* * *
57716269 AATTATTAAGAACAAATT
1 AAATAATAAGAGCAAATT
57716287 AACAAGCTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.50, C:0.12, G:0.13, T:0.25
Consensus pattern (25 bp):
AAATAATAAGAGCAAATTTAACCGA
Found at i:57717126 original size:14 final size:14
Alignment explanation
Indices: 57717107--57717133 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
57717097 CAGAATATAA
57717107 CATCTAATTATTTG
1 CATCTAATTATTTG
57717121 CATCTAATTATTT
1 CATCTAATTATTT
57717134 TTATGACTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.04, T:0.52
Consensus pattern (14 bp):
CATCTAATTATTTG
Found at i:57722860 original size:45 final size:45
Alignment explanation
Indices: 57722763--57723059 Score: 411
Period size: 45 Copynumber: 6.6 Consensus size: 45
57722753 CCGGTATTTT
* * * *
57722763 GCCTGCTAGGCTCGAA-GCCCG-ATA-TCATTTCACCGGTATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGT-ATCTCACCAGCATTATA
* ** *
57722806 GCCTGCTAGGCTCGAAGGCCTAAATAGTATCTCACCGGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATTATA
* * *
57722851 CCCTACTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATTATA
* *
57722896 GCCTGCTAGGCTCAAAGGCTCGAATAGTATCTCACCAGAATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATTATA
*
57722941 GCCTGCTAGGCTCAAAGGCCCGAATAGTATATCACCAGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATTATA
* * *
57722986 GCCTGCTAGGCTCAAAGGCCCGAATAGTATATCACCAGAATTTTA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATTATA
57723031 GCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTA
57723060 CTGTACGATA
Statistics
Matches: 232, Mismatches: 19, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
43 16 0.07
44 3 0.01
45 212 0.91
46 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (45 bp):
GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATTATA
Found at i:57723907 original size:25 final size:25
Alignment explanation
Indices: 57723879--57723974 Score: 156
Period size: 25 Copynumber: 3.8 Consensus size: 25
57723869 GTAACTTATT
* *
57723879 CGGAAATAATAAGGGCAAATTTAAC
1 CGGAAATATTAAGAGCAAATTTAAC
57723904 CGGAAATATTAAGAGCAAATTTAAC
1 CGGAAATATTAAGAGCAAATTTAAC
57723929 CGGAAATATTAAGAGCAAATTTAAC
1 CGGAAATATTAAGAGCAAATTTAAC
* *
57723954 CGGAAATATTGAGAACAAATT
1 CGGAAATATTAAGAGCAAATT
57723975 AACAAGCTGA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 67 1.00
ACGTcount: A:0.48, C:0.11, G:0.18, T:0.23
Consensus pattern (25 bp):
CGGAAATATTAAGAGCAAATTTAAC
Found at i:57723960 original size:12 final size:12
Alignment explanation
Indices: 57723895--57723960 Score: 60
Period size: 12 Copynumber: 5.3 Consensus size: 12
57723885 TAATAAGGGC
57723895 AAATTTAACCGG
1 AAATTTAACCGG
** *
57723907 AAATATTAAGAGC
1 AAAT-TTAACCGG
57723920 AAATTTAACCGG
1 AAATTTAACCGG
** *
57723932 AAATATTAAGAGC
1 AAAT-TTAACCGG
57723945 AAATTTAACCGG
1 AAATTTAACCGG
57723957 AAAT
1 AAAT
57723961 ATTGAGAACA
Statistics
Matches: 40, Mismatches: 12, Indels: 4
0.71 0.21 0.07
Matches are distributed among these distances:
12 22 0.55
13 18 0.45
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (12 bp):
AAATTTAACCGG
Found at i:57726392 original size:13 final size:13
Alignment explanation
Indices: 57726374--57726399 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
57726364 GCTCGACAGG
57726374 GACACGCCCGTGT
1 GACACGCCCGTGT
57726387 GACACGCCCGTGT
1 GACACGCCCGTGT
57726400 TATATTTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:57739058 original size:19 final size:19
Alignment explanation
Indices: 57739019--57739058 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
57739009 GCTTCGAGGT
* * *
57739019 AATAAGATAGAATAGAAAA
1 AATAAGAAAAAATAAAAAA
57739038 AATAAGAAAAAATAAAAAA
1 AATAAGAAAAAATAAAAAA
57739057 AA
1 AA
57739059 GAGAGATGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (19 bp):
AATAAGAAAAAATAAAAAA
Found at i:57740929 original size:20 final size:20
Alignment explanation
Indices: 57740892--57740931 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
57740882 TTTGATAAAT
*
57740892 TTTTTGATATAAAGATGATG
1 TTTTTGATATAAACATGATG
57740912 TTTTTGA-ATAAAACATGATG
1 TTTTTGATAT-AAACATGATG
57740932 AGTTTTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.38, C:0.03, G:0.17, T:0.42
Consensus pattern (20 bp):
TTTTTGATATAAACATGATG
Found at i:57745248 original size:20 final size:20
Alignment explanation
Indices: 57745225--57745290 Score: 114
Period size: 20 Copynumber: 3.3 Consensus size: 20
57745215 GCCCACATGA
* *
57745225 GCGTGTCCCAAGCCACACTG
1 GCGTGTCCCAAACCACACGG
57745245 GCGTGTCCCAAACCACACGG
1 GCGTGTCCCAAACCACACGG
57745265 GCGTGTCCCAAACCACACGG
1 GCGTGTCCCAAACCACACGG
57745285 GCGTGT
1 GCGTGT
57745291 GACCCCTGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.21, C:0.38, G:0.27, T:0.14
Consensus pattern (20 bp):
GCGTGTCCCAAACCACACGG
Found at i:57751589 original size:49 final size:50
Alignment explanation
Indices: 57751523--57751657 Score: 157
Period size: 51 Copynumber: 2.7 Consensus size: 50
57751513 ATCTGGTAGG
* * *
57751523 CATAGTAGCCAGCACTTAGTACTACACATGCGACCAA-TTATTTGGTACA
1 CATAGTAGCCTGGACTTAGTACTACACATGCGACCAAGTTATTGGGTACA
* * * * *
57751572 CGTAGTAGCCTGGACTTAGTACTACACACGTGATCGAAGTTATTGGGTACG
1 CATAGTAGCCTGGACTTAGTACTACACATGCGA-CCAAGTTATTGGGTACA
*
57751623 CATAGTAGCCT-GATCTTAGTACTACATATGCGACC
1 CATAGTAGCCTGGA-CTTAGTACTACACATGCGACC
57751658 TCATAATAGA
Statistics
Matches: 70, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
49 28 0.40
50 6 0.09
51 36 0.51
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (50 bp):
CATAGTAGCCTGGACTTAGTACTACACATGCGACCAAGTTATTGGGTACA
Found at i:57756911 original size:25 final size:25
Alignment explanation
Indices: 57756873--57756924 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
57756863 ACTGCTACTG
*
57756873 TCCAACACTGTTTTACTACTAAAAT
1 TCCAACACTATTTTACTACTAAAAT
57756898 TCCAACACTATTTTACTACTAAAAT
1 TCCAACACTATTTTACTACTAAAAT
57756923 TC
1 TC
57756925 ACTTTTACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.25, G:0.02, T:0.37
Consensus pattern (25 bp):
TCCAACACTATTTTACTACTAAAAT
Found at i:57761200 original size:27 final size:27
Alignment explanation
Indices: 57761170--57761297 Score: 175
Period size: 27 Copynumber: 4.7 Consensus size: 27
57761160 CGTACCTGAA
57761170 CCCTCATGTGATAAAATGACAATTTTG
1 CCCTCATGTGATAAAATGACAATTTTG
* * *
57761197 CCCTAATATGATAAAATGACGATTTTG
1 CCCTCATGTGATAAAATGACAATTTTG
***
57761224 CCCTCATGTGATAAAATGGTGATTTTG
1 CCCTCATGTGATAAAATGACAATTTTG
* *
57761251 CCCTTATGTGATAAAAAGACAATTTTG
1 CCCTCATGTGATAAAATGACAATTTTG
*
57761278 CCCTTATGTGATAAAATGAC
1 CCCTCATGTGATAAAATGAC
57761298 TGAAATACCC
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (27 bp):
CCCTCATGTGATAAAATGACAATTTTG
Found at i:57761779 original size:35 final size:35
Alignment explanation
Indices: 57761735--57761831 Score: 133
Period size: 35 Copynumber: 2.8 Consensus size: 35
57761725 TGGTTACTAC
57761735 ACTGATTACTATTACTGAAATGGGCTAAAACCCAA
1 ACTGATTACTATTACTGAAATGGGCTAAAACCCAA
* * * *
57761770 ATTGATTACTATTACTGAAATGGGATAAAACCTAG
1 ACTGATTACTATTACTGAAATGGGCTAAAACCCAA
* *
57761805 ACTG-CTACTGTTACTGAAATGGGCTAA
1 ACTGATTACTATTACTGAAATGGGCTAA
57761832 GGCCTAGATT
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
34 20 0.37
35 34 0.63
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (35 bp):
ACTGATTACTATTACTGAAATGGGCTAAAACCCAA
Found at i:57761824 original size:34 final size:34
Alignment explanation
Indices: 57761741--57761863 Score: 138
Period size: 34 Copynumber: 3.6 Consensus size: 34
57761731 CTACACTGAT
* * *
57761741 TACTATTACTGAAATGGGCTAAAACCCAAATTGAT
1 TACTATTACTGAAATGGGCTAAAACCTAGATTG-C
* *
57761776 TACTATTACTGAAATGGGATAAAACCTAGACTGC
1 TACTATTACTGAAATGGGCTAAAACCTAGATTGC
* **
57761810 TACTGTTACTGAAATGGGCTAAGGCCTAGATTGC
1 TACTATTACTGAAATGGGCTAAAACCTAGATTGC
* * *
57761844 CACTGTTACTGATATGGGCT
1 TACTATTACTGAAATGGGCT
57761864 TAGGCCCTAC
Statistics
Matches: 76, Mismatches: 12, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
34 47 0.62
35 29 0.38
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (34 bp):
TACTATTACTGAAATGGGCTAAAACCTAGATTGC
Found at i:57771475 original size:26 final size:25
Alignment explanation
Indices: 57771446--57771509 Score: 65
Period size: 27 Copynumber: 2.5 Consensus size: 25
57771436 AAAATCATCT
57771446 CTTTCAAAAACCAAGGTTTAGAAAAA
1 CTTTCAAAAACCAA-GTTTAGAAAAA
* * * *
57771472 CTTTTGAAAATCCAATTTTTGAAAAA
1 C-TTTCAAAAACCAAGTTTAGAAAAA
*
57771498 TTTTCAAAAACC
1 CTTTCAAAAACC
57771510 CATTCCACAG
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
25 9 0.30
26 10 0.33
27 11 0.37
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.31
Consensus pattern (25 bp):
CTTTCAAAAACCAAGTTTAGAAAAA
Found at i:57776931 original size:10 final size:11
Alignment explanation
Indices: 57776918--57776950 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
57776908 TCCATTTATT
57776918 CACATTTTACCA
1 CACATTTTA-CA
57776930 CACATTTTACA
1 CACATTTTACA
57776941 -ACATTTTACA
1 CACATTTTACA
57776951 AATAGGTCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.48
11 2 0.10
12 9 0.43
ACGTcount: A:0.36, C:0.27, G:0.00, T:0.36
Consensus pattern (11 bp):
CACATTTTACA
Found at i:57776935 original size:12 final size:12
Alignment explanation
Indices: 57776918--57776949 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
57776908 TCCATTTATT
57776918 CACATTTTACCA
1 CACATTTTACCA
57776930 CACATTTTA-CA
1 CACATTTTACCA
57776941 -ACATTTTAC
1 CACATTTTAC
57776950 AAATAGGTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 8 0.42
11 2 0.11
12 9 0.47
ACGTcount: A:0.34, C:0.28, G:0.00, T:0.38
Consensus pattern (12 bp):
CACATTTTACCA
Found at i:57783953 original size:119 final size:120
Alignment explanation
Indices: 57783704--57783961 Score: 337
Period size: 119 Copynumber: 2.2 Consensus size: 120
57783694 GCTACTCGTT
* * * *
57783704 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAACTCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* * *
57783768 GTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
65 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
*
57783824 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* * * *
57783888 A-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
66 ATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
57783944 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
57783962 GCCCGGACAT
Statistics
Matches: 122, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
118 4 0.03
119 62 0.51
120 54 0.44
121 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:57783968 original size:40 final size:40
Alignment explanation
Indices: 57783685--57783968 Score: 353
Period size: 40 Copynumber: 7.1 Consensus size: 40
57783675 CGGAATTTAA
** * *
57783685 CCGGATATAGCT-ACTCGTTCAAATGCCTTTGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
57783725 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
57783765 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
57783805 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
57783845 TCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
57783884 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
57783924 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
57783964 CCGGA
1 CCGGA
57783969 CATCATTCGA
Statistics
Matches: 216, Mismatches: 21, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.14
40 171 0.79
41 12 0.06
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:57791158 original size:23 final size:23
Alignment explanation
Indices: 57791132--57791178 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
57791122 TCCTTAAGGG
57791132 TATGAACAAGCGTTTCCCTTTTT
1 TATGAACAAGCGTTTCCCTTTTT
* *
57791155 TATGAATAAGGGTTTCCCTTTTT
1 TATGAACAAGCGTTTCCCTTTTT
57791178 T
1 T
57791179 CACTGCACCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.21, C:0.17, G:0.15, T:0.47
Consensus pattern (23 bp):
TATGAACAAGCGTTTCCCTTTTT
Found at i:57792307 original size:12 final size:12
Alignment explanation
Indices: 57792290--57792328 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
57792280 GGTTCGGTTT
57792290 GAGAGATTTGAG
1 GAGAGATTTGAG
57792302 GAGAGATTTGAG
1 GAGAGATTTGAG
*
57792314 GAGGGATTTGAG
1 GAGAGATTTGAG
57792326 GAG
1 GAG
57792329 GAAAATTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.46, T:0.23
Consensus pattern (12 bp):
GAGAGATTTGAG
Found at i:57796738 original size:23 final size:23
Alignment explanation
Indices: 57796711--57796757 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
57796701 GAAAGCTTAG
57796711 TAAGCCATAAGCAAATAAATCAT
1 TAAGCCATAAGCAAATAAATCAT
57796734 TAAGCCATAAGCAAATAAATCAT
1 TAAGCCATAAGCAAATAAATCAT
57796757 T
1 T
57796758 TCAATGATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.51, C:0.17, G:0.09, T:0.23
Consensus pattern (23 bp):
TAAGCCATAAGCAAATAAATCAT
Found at i:57798710 original size:26 final size:26
Alignment explanation
Indices: 57798648--57798713 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
57798638 ACTGATTTTG
* *
57798648 CACACTTAGTGCTTAGAAATTAATTCA
1 CACACTTAGTGCTTA-AAATCAACTCA
*
57798675 CACACATAGTGCTT-AAATCCAACTCA
1 CACACTTAGTGCTTAAAAT-CAACTCA
57798701 CACACTTAGTGCT
1 CACACTTAGTGCT
57798714 CAGTATCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
25 4 0.12
26 17 0.50
27 13 0.38
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.29
Consensus pattern (26 bp):
CACACTTAGTGCTTAAAATCAACTCA
Found at i:57803170 original size:27 final size:27
Alignment explanation
Indices: 57803107--57803188 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 27
57803097 GTTGTTAAGG
57803107 CCTCGATTTGTAAAATTATCGAAATAC
1 CCTCGATTTGTAAAATTATCGAAATAC
* *
57803134 CCTTGATTTGTAAAATTATTGAAATA-
1 CCTCGATTTGTAAAATTATCGAAATAC
* * *
57803160 CCTCCGGTTTGT-AAATGATCGTAATAC
1 CCT-CGATTTGTAAAATTATCGAAATAC
57803187 CC
1 CC
57803189 ATGTAAGGTA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
26 14 0.30
27 32 0.70
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.35
Consensus pattern (27 bp):
CCTCGATTTGTAAAATTATCGAAATAC
Found at i:57803210 original size:27 final size:27
Alignment explanation
Indices: 57803172--57803340 Score: 250
Period size: 27 Copynumber: 6.3 Consensus size: 27
57803162 TCCGGTTTGT
* *
57803172 AAATGATCGTAATACCCATGTAAGGTA
1 AAATGACCGTAATACCCCTGTAAGGTA
57803199 AAATGACCGTAATACCCCTGTAAGGTA
1 AAATGACCGTAATACCCCTGTAAGGTA
*
57803226 AAATGACCGTAATACCCCTGTAGGGTA
1 AAATGACCGTAATACCCCTGTAAGGTA
*
57803253 AAATGACCGTAATGCCCCTG-AAGGGTA
1 AAATGACCGTAATACCCCTGTAA-GGTA
* *
57803280 AAATGACTGTAATACCCCTGCAAGGTA
1 AAATGACCGTAATACCCCTGTAAGGTA
* *
57803307 AAATGACCGTAATACCCCTATATGGTA
1 AAATGACCGTAATACCCCTGTAAGGTA
57803334 AAATGAC
1 AAATGAC
57803341 AATTATGCCT
Statistics
Matches: 129, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
26 1 0.01
27 126 0.98
28 2 0.02
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (27 bp):
AAATGACCGTAATACCCCTGTAAGGTA
Found at i:57811456 original size:39 final size:39
Alignment explanation
Indices: 57811219--57811455 Score: 429
Period size: 39 Copynumber: 6.1 Consensus size: 39
57811209 ATTATATTAT
* *
57811219 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
57811258 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
57811297 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
57811336 CAGTACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
57811375 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
57811414 CAGTACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
57811453 CAG
1 CAG
57811456 TGTCTTGCAT
Statistics
Matches: 191, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 191 1.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:57813600 original size:52 final size:51
Alignment explanation
Indices: 57813491--57813667 Score: 218
Period size: 52 Copynumber: 3.5 Consensus size: 51
57813481 GGATACCCCA
* * * * *
57813491 TGGCCTGCACATAGTACGACCCTTGT-AGTCAAAGCTA-CATTCTTTACAAAG
1 TGGCCTTCACATAGTACCACACTTGTGA-CCAAAGCTATC-TTCTTCACAAAG
* *
57813542 TGGCCTTCACATAGTACCATAGTTGTGACCAAAGCTATCGTTCTTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATC-TTCTTCACAAAG
*
57813594 TGGCCTTCACATAGTACCACACTTGTGACC-AAGCTATC-TCTTCTCAAAG
1 TGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAAG
*
57813643 TGGCCTTCACATATTACCACACTTG
1 TGGCCTTCACATAGTACCACACTTG
57813668 AGTCACTAGT
Statistics
Matches: 112, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
49 34 0.30
51 37 0.33
52 41 0.37
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.29
Consensus pattern (51 bp):
TGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAAG
Found at i:57817581 original size:79 final size:81
Alignment explanation
Indices: 57817445--57817627 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
57817435 TCGAATGATG
* *
57817445 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
57817509 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
57817524 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
57817586 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
57817604 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
57817628 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:57817643 original size:40 final size:40
Alignment explanation
Indices: 57817446--57817629 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
57817436 CGAATGATGT
* * * *
57817446 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
57817486 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
57817526 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
57817564 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
57817605 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
57817630 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:57817651 original size:79 final size:79
Alignment explanation
Indices: 57817498--57817652 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
57817488 GGACTAAGAT
* **
57817498 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
57817563 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
57817577 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
57817640 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
57817653 ATTTCGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:57820896 original size:40 final size:40
Alignment explanation
Indices: 57820500--57820892 Score: 552
Period size: 40 Copynumber: 9.8 Consensus size: 40
57820490 CGAACACACG
* * * * *
57820500 TCACTAGCATGATTGCTCTTCGAGACCTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
57820540 ACACCAGCACGAATGCTCTTAGGGGTTTAGCACGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
57820580 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
57820620 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
57820660 TCACTAGCACGAATGCTCTTTGAGACTTAGCCCGGGTACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
57820700 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
57820740 TCAATAGCACGAATGCTCTTCGAGACTTAGACCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
57820780 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGGTACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
57820820 TCAGTAGCATGAATGCTCTTCGGGACTTAGCCCAGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
57820860 TCACTAGCACGAATGCTCTTCGGGACTTAGCCC
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCC
57820893 AGATCATTGT
Statistics
Matches: 311, Mismatches: 42, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 311 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:57820996 original size:38 final size:38
Alignment explanation
Indices: 57820954--57821028 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
57820944 GAATTTTAAT
*
57820954 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTAC
* *
57820992 CCGGACATAATCTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
57821029 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTAC
Found at i:57829203 original size:27 final size:27
Alignment explanation
Indices: 57829168--57829247 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 27
57829158 ATAAATACCT
*
57829168 CACATAGGGGCAAAACAGTCAATTTAC
1 CACATAGGGGCAAAACAGTCATTTTAC
** ***
57829195 CATGTAGGGGCATTTCAGTCATTTTAC
1 CACATAGGGGCAAAACAGTCATTTTAC
*
57829222 CACATAAGGGCAAAACAGTCATTTTA
1 CACATAGGGGCAAAACAGTCATTTTA
57829248 TCGATTATGG
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (27 bp):
CACATAGGGGCAAAACAGTCATTTTAC
Found at i:57832582 original size:40 final size:40
Alignment explanation
Indices: 57832538--57832649 Score: 215
Period size: 40 Copynumber: 2.8 Consensus size: 40
57832528 ATAGCAACTC
57832538 GCACAAATGCCTTCGGGACTTAGCCCTGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCTGATATAGTCACTA
57832578 GCACAAATGCCTTCGGGACTTAGCCCTGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCTGATATAGTCACTA
*
57832618 GCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGACTTAGCCCTGATAT
57832650 CATTCGAATA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCTGATATAGTCACTA
Found at i:57836901 original size:40 final size:40
Alignment explanation
Indices: 57836823--57837085 Score: 447
Period size: 40 Copynumber: 6.6 Consensus size: 40
57836813 ACCCAAGTAT
* * *
57836823 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
* * * **
57836862 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
57836902 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
57836942 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
57836982 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
57837022 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
57837062 CTTCGGGACTTAGCCCGGATATAG
1 CTTCGGGACTTAGCCCGGATATAG
57837086 NTTTTAGCAC
Statistics
Matches: 211, Mismatches: 12, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
39 11 0.05
40 200 0.95
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
Found at i:57842910 original size:196 final size:196
Alignment explanation
Indices: 57842576--57842967 Score: 784
Period size: 196 Copynumber: 2.0 Consensus size: 196
57842566 CATTATTTAA
57842576 TTACATTCCTACTATTTTTACTGAATTTTCAAACTCACATCACTGCTTCTGTCAGCATCTATTTT
1 TTACATTCCTACTATTTTTACTGAATTTTCAAACTCACATCACTGCTTCTGTCAGCATCTATTTT
57842641 AAGGTAAATTTCACCTATTTCATAGTTTCCATGAATCAACTAGCCATTGACATACATGGCACCAA
66 AAGGTAAATTTCACCTATTTCATAGTTTCCATGAATCAACTAGCCATTGACATACATGGCACCAA
57842706 ATATGATCGTGATTAACCATTCCAATGGCTAGTCATTTCCAAGCATTTCCACACCTCTCAATAAC
131 ATATGATCGTGATTAACCATTCCAATGGCTAGTCATTTCCAAGCATTTCCACACCTCTCAATAAC
57842771 C
196 C
57842772 TTACATTCCTACTATTTTTACTGAATTTTCAAACTCACATCACTGCTTCTGTCAGCATCTATTTT
1 TTACATTCCTACTATTTTTACTGAATTTTCAAACTCACATCACTGCTTCTGTCAGCATCTATTTT
57842837 AAGGTAAATTTCACCTATTTCATAGTTTCCATGAATCAACTAGCCATTGACATACATGGCACCAA
66 AAGGTAAATTTCACCTATTTCATAGTTTCCATGAATCAACTAGCCATTGACATACATGGCACCAA
57842902 ATATGATCGTGATTAACCATTCCAATGGCTAGTCATTTCCAAGCATTTCCACACCTCTCAATAAC
131 ATATGATCGTGATTAACCATTCCAATGGCTAGTCATTTCCAAGCATTTCCACACCTCTCAATAAC
57842967 C
196 C
57842968 ATATATATAC
Statistics
Matches: 196, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
196 196 1.00
ACGTcount: A:0.30, C:0.26, G:0.10, T:0.35
Consensus pattern (196 bp):
TTACATTCCTACTATTTTTACTGAATTTTCAAACTCACATCACTGCTTCTGTCAGCATCTATTTT
AAGGTAAATTTCACCTATTTCATAGTTTCCATGAATCAACTAGCCATTGACATACATGGCACCAA
ATATGATCGTGATTAACCATTCCAATGGCTAGTCATTTCCAAGCATTTCCACACCTCTCAATAAC
C
Found at i:57843588 original size:39 final size:41
Alignment explanation
Indices: 57843534--57843675 Score: 211
Period size: 40 Copynumber: 3.6 Consensus size: 41
57843524 AACCCAAGTA
* *
57843534 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
* *
57843573 CCTTCGGGTCTTAGCCCCGATATAGTCAA-TAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
*
57843613 CCTTCGGGACTTGGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
57843653 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
57843676 CATTCGAATA
Statistics
Matches: 92, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
39 13 0.14
40 76 0.83
41 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
Found at i:57857750 original size:39 final size:40
Alignment explanation
Indices: 57857622--57857806 Score: 184
Period size: 40 Copynumber: 4.7 Consensus size: 40
57857612 GCTACTCGTT
* *
57857622 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
*
57857662 CAAATGCCTTCGGGACTTAACCC-GAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAA-TTAGTAACTCGCA
*
57857702 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * * * * *
57857741 CAAACGCCTTC-GGATCTTAGTCCAG-ATATGGTCACTTAGCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
57857782 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57857807 CATCATTCAA
Statistics
Matches: 121, Mismatches: 15, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 76 0.63
41 11 0.09
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:57864818 original size:27 final size:27
Alignment explanation
Indices: 57864788--57864845 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
57864778 TTTCAGTCAT
*
57864788 TTTACCAT-ATAAGGGCAAAACAATCAA
1 TTTACC-TCATAACGGCAAAACAATCAA
* *
57864815 TTTACCTCATAACGGCAAAATAATCAT
1 TTTACCTCATAACGGCAAAACAATCAA
57864842 TTTA
1 TTTA
57864846 TCAATTAAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.29
Consensus pattern (27 bp):
TTTACCTCATAACGGCAAAACAATCAA
Found at i:57867894 original size:27 final size:27
Alignment explanation
Indices: 57867856--57868078 Score: 248
Period size: 27 Copynumber: 8.3 Consensus size: 27
57867846 TAAGTTGTAA
57867856 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*** *
57867883 AATTATTAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
57867910 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
57867937 AATTACTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
57867964 AATTACCGAAATACCCTTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
57867991 AGTTACCGAAATACCCTTGTAAGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
57868018 AAATACCAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
57868045 AATTACCGACATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
57868072 AATTACC
1 AATTACC
57868079 ATTTTGCCCC
Statistics
Matches: 168, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 168 1.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:57868830 original size:26 final size:27
Alignment explanation
Indices: 57868801--57868860 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
57868791 CCACATATAT
*
57868801 ATATCTGT-TCTAGTGGCCTAGCCACA
1 ATATCTGTATCTAGTGACCTAGCCACA
* * *
57868827 ATATCTGTATCTAGTGACTTCGTCACA
1 ATATCTGTATCTAGTGACCTAGCCACA
57868854 ATATCTG
1 ATATCTG
57868861 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTAGTGACCTAGCCACA
Found at i:57871787 original size:27 final size:27
Alignment explanation
Indices: 57871749--57871804 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
57871739 ATCTCCAGGT
57871749 TAAATCAGATGAGTTAGATAAGTTGCC
1 TAAATCAGATGAGTTAGATAAGTTGCC
57871776 TAAATCAGATGAGTTAGATAAGTTGCC
1 TAAATCAGATGAGTTAGATAAGTTGCC
57871803 TA
1 TA
57871805 TTGTGATTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.30
Consensus pattern (27 bp):
TAAATCAGATGAGTTAGATAAGTTGCC
Found at i:57872760 original size:16 final size:18
Alignment explanation
Indices: 57872741--57872773 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
57872731 CATACAAATT
57872741 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
57872757 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
57872774 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:57873413 original size:43 final size:43
Alignment explanation
Indices: 57873336--57873543 Score: 274
Period size: 43 Copynumber: 4.9 Consensus size: 43
57873326 TTTGAATTCA
* *
57873336 TTCACCGGCATT-TCGCCTGCTAGGCTCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
* * *
57873378 TTCACCAGCATTATAGCTTGTTAGGCTCGAGGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
* * *
57873421 TTCACTGGCATTATAGCCTGCAACGCTCGAGGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
* * * * *
57873464 CTCATCGGTAGTATAGCCTGCTAGGCTCGAGGCCCAATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
* *
57873507 TTCACCGGCATTATAGCTTGCTAGGCTCGAAGCCCGA
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGA
57873544 ATTCATCATA
Statistics
Matches: 139, Mismatches: 26, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
42 11 0.08
43 128 0.92
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.28
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
Found at i:57887032 original size:13 final size:13
Alignment explanation
Indices: 57887014--57887040 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
57887004 GCAGACATTC
57887014 TTATATAATAGAA
1 TTATATAATAGAA
57887027 TTATATAATAGAA
1 TTATATAATAGAA
57887040 T
1 T
57887041 AAAACAAGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (13 bp):
TTATATAATAGAA
Found at i:57891491 original size:20 final size:20
Alignment explanation
Indices: 57891462--57891508 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
57891452 ATTTTGATAA
*
57891462 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
57891482 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
57891502 ACATGAT
1 ACATGAT
57891509 GTATTCATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Done.