Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 178 of 297
Found at i:59983804 original size:26 final size:26
Alignment explanation
Indices: 59983768--59983817 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
59983758 TCTCATCCCT
59983768 ATTTTACCCCTAACAAAATTTTGACG
1 ATTTTACCCCTAACAAAATTTTGACG
*
59983794 ATTTTACCCCTAGCAAAATTTTGA
1 ATTTTACCCCTAACAAAATTTTGA
59983818 TGAATTTGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (26 bp):
ATTTTACCCCTAACAAAATTTTGACG
Found at i:59984399 original size:29 final size:29
Alignment explanation
Indices: 59984358--59984420 Score: 119
Period size: 29 Copynumber: 2.2 Consensus size: 29
59984348 TATGTTACCC
59984358 TAATA-GGATATCCTTGATCTCTTTGGGA
1 TAATATGGATATCCTTGATCTCTTTGGGA
59984386 TAATATGGATATCCTTGATCTCTTTGGGA
1 TAATATGGATATCCTTGATCTCTTTGGGA
59984415 TAATAT
1 TAATAT
59984421 TCATTCTCCC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 5 0.15
29 29 0.85
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.41
Consensus pattern (29 bp):
TAATATGGATATCCTTGATCTCTTTGGGA
Found at i:59993141 original size:480 final size:481
Alignment explanation
Indices: 59992443--59993630 Score: 2086
Period size: 480 Copynumber: 2.5 Consensus size: 481
59992433 GGTTTCGATA
** * *
59992443 ATATTTTTCTAAAAATATTTTTATTTTCCAGAATATTATTTACTCGTTTAGTTAATATTGTAACT
1 ATATTTTTCTAAAAATATTTTTATTTTCTGGAATATTATTTACCCGTTTAGTTGATATTGTAACT
**
59992508 TCTCTCCATTTTAATTTATTTTTCAATAAAATATTTACTCTAACCAAAAAATATTTAAAACCAT-
66 TCTCTTAATTTTAATTTATTTTTCAATAAAATATTTACTCTAACCAAAAAATATTTAAAACCATC
* * * *
59992572 AGAATTGATTTCTCAATAAATA-TTTT-TTTTCCGGAATATTATTTACCGATTTTTCAATGAAAT
131 A-AATTGATTTCTTAAAAAACATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAAAT
*
59992635 TAAGCTAACTAATTTTTTTAAAAAAAAACCAATGACTAGTAAACCCGATTAACTCCTAGCATTCA
195 TAAGCTAACTAA-TTTTTTAAAAAAAAAACAATGACTAGTAAACCCGATTAACTCCTAGCATTCA
59992700 CCCGGAACCCGATAAACTTACTCAAAACTGGTAGACCCATTTTTAGGACGATTACAAGTAGGTTT
259 CCCGGAACCCGATAAACTTACTCAAAACTGGTAGACCCATTTTTAGGACGATTACAAGTAGGTTT
*
59992765 GGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGT-TTGAAAA
324 GGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTAG-AAA
*
59992829 GGAAAGAGGAAAATATTGGGTAATACTCCCGTGGAAGAATTTGCGTGCCAGCCTAAAAGGATGGG
388 GGAAAAAGGAAAATATTGGGTAATACTCCCGTGGAAGAATTTGCGTGCCAGCCTAAAAGGATGGG
59992894 GGCATTAGTATTCATGATATTCATGAGTG
453 GGCATTAGTATTCATGATATTCATGAGTG
*
59992923 ATATTTTTCTAAAAATATTTTTATTTTCTGGCATATTATTTACCCGTTTAGTTGATATTGTAACT
1 ATATTTTTCTAAAAATATTTTTATTTTCTGGAATATTATTTACCCGTTTAGTTGATATTGTAACT
59992988 TCTCTTAATTTTAATTTATTTTTCAATAAAATATTTACTCTAACCAAAAAATATTTAAAACCATC
66 TCTCTTAATTTTAATTTATTTTTCAATAAAATATTTACTCTAACCAAAAAATATTTAAAACCATC
* * *
59993053 AAATTGATTTCTTAAAAAACATTTTTATTTTTCGGAATATTATTTGCTGATTTTTAAATGAAATT
131 AAATTGATTTCTTAAAAAACATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAAATT
*
59993118 AAGCTAACTAATTTTTT-AAAAAAAAACAATGGCTAGTAAACCCGATTAACTCCTAGCATTCACC
196 AAGCTAACTAATTTTTTAAAAAAAAAACAATGACTAGTAAACCCGATTAACTCCTAGCATTCACC
* *
59993182 CGGAACCCGATAAACTTACTCAAAACTGGTAGACCTATTTTTAGGACTATTACAAGTAGGTTTGG
261 CGGAACCCGATAAACTTACTCAAAACTGGTAGACCCATTTTTAGGACGATTACAAGTAGGTTTGG
59993247 ACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTAGAAAGGA
326 ACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTAGAAAGGA
*
59993312 AAAAGGAAAATATTGGGTAATACTCCCGTGGAAGAATTTGTGTGCCAGCCTAAAAGGATGGGGGC
391 AAAAGGAAAATATTGGGTAATACTCCCGTGGAAGAATTTGCGTGCCAGCCTAAAAGGATGGGGGC
59993377 ATTAGTATTCATGATATTCATGAGTG
456 ATTAGTATTCATGATATTCATGAGTG
59993403 ATATTTTTCTAAAAATATTTTTATTTTCTGGAATATTATTTACCCGTTTAGTTGATATTGTAACT
1 ATATTTTTCTAAAAATATTTTTATTTTCTGGAATATTATTTACCCGTTTAGTTGATATTGTAACT
*
59993468 TCTCTTAATTTTAATTTATTTTTCAAGAAAATATTTACTCTAACCAAAAAATATTTAAAACCATC
66 TCTCTTAATTTTAATTTATTTTTCAATAAAATATTTACTCTAACCAAAAAATATTTAAAACCATC
59993533 AAATTGATTTCTTAAAAAACATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAAATT
131 AAATTGATTTCTTAAAAAACATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAAATT
*
59993598 AAGCTAACTAA---TTTAAAAAAAAAACAATTACTA
196 AAGCTAACTAATTTTTTAAAAAAAAAACAATGACTA
59993631 NNNNNNNNNN
Statistics
Matches: 675, Mismatches: 28, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
477 3 0.00
478 16 0.02
480 598 0.89
481 13 0.02
482 45 0.07
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (481 bp):
ATATTTTTCTAAAAATATTTTTATTTTCTGGAATATTATTTACCCGTTTAGTTGATATTGTAACT
TCTCTTAATTTTAATTTATTTTTCAATAAAATATTTACTCTAACCAAAAAATATTTAAAACCATC
AAATTGATTTCTTAAAAAACATTTTTATTTTCCGGAATATTATTTACCGATTTTTAAATGAAATT
AAGCTAACTAATTTTTTAAAAAAAAAACAATGACTAGTAAACCCGATTAACTCCTAGCATTCACC
CGGAACCCGATAAACTTACTCAAAACTGGTAGACCCATTTTTAGGACGATTACAAGTAGGTTTGG
ACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTAGAAAGGA
AAAAGGAAAATATTGGGTAATACTCCCGTGGAAGAATTTGCGTGCCAGCCTAAAAGGATGGGGGC
ATTAGTATTCATGATATTCATGAGTG
Found at i:60004564 original size:47 final size:47
Alignment explanation
Indices: 60004437--60004980 Score: 809
Period size: 47 Copynumber: 11.4 Consensus size: 47
60004427 CAGCCAAGAG
*
60004437 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
60004484 AGTGTATGTATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
60004533 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
60004580 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
60004629 AGTATATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AG----TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
60004680 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
60004727 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
60004774 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
60004821 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
60004868 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * * * *
60004915 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
60004962 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
60004981 TCCCGAAAGG
Statistics
Matches: 459, Mismatches: 30, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
47 326 0.71
49 88 0.19
51 41 0.09
53 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:60005155 original size:37 final size:37
Alignment explanation
Indices: 60005099--60005177 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
60005089 CCGAGCTCTA
* * *
60005099 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
60005136 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
60005173 AAGAC
1 AAGAC
60005178 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:60012367 original size:590 final size:590
Alignment explanation
Indices: 60011249--60012435 Score: 2340
Period size: 590 Copynumber: 2.0 Consensus size: 590
60011239 ATGCATTTAG
*
60011249 CCGAAAACAAGTTTGTTTTGACAACAACTCACTTACAACTTATCTCAATCATTTTACAAGTTTAT
1 CCGAAAACAAGTTTGTTTAGACAACAACTCACTTACAACTTATCTCAATCATTTTACAAGTTTAT
60011314 ACACTTCAAATGTTTAAATTATTATACATAAAATATAACATAGTTTTTCCAACATTTTATACACC
66 ACACTTCAAATGTTTAAATTATTATACATAAAATATAACATAGTTTTTCCAACATTTTATACACC
60011379 GCAACCTAATACATACATACTATAATTACCTAATTTTTAATCACATTTACCGAACCTTAATAATA
131 GCAACCTAATACATACATACTATAATTACCTAATTTTTAATCACATTTACCGAACCTTAATAATA
60011444 TAAATTAATAAGTTCAAACAACATATCCAACTTATAACTACTTATTCAGTACATTACCTCACTAT
196 TAAATTAATAAGTTCAAACAACATATCCAACTTATAACTACTTATTCAGTACATTACCTCACTAT
*
60011509 CACAAACATAATTTGAGCATCTAAAACCCACTCAAAACCATGCACGTAATCACGATTCAACTAAG
261 CACAAACATAATTTGAGCATCTAAAACCCACTCAAAAACATGCACGTAATCACGATTCAACTAAG
60011574 TTGAATGAAAATACTTATTAACTAAATAAGATTATTTTTATCATTACAAGACATTAACTACATAC
326 TTGAATGAAAATACTTATTAACTAAATAAGATTATTTTTATCATTACAAGACATTAACTACATAC
60011639 AGATATATCCAAAACATAAATATTACCTACCATATGTCAAACATGACAAGTCAAATTATCATATG
391 AGATATATCCAAAACATAAATATTACCTACCATATGTCAAACATGACAAGTCAAATTATCATATG
60011704 CATAAGTATTTGTATAAGCAATGCCAAATCACAAATTAATCATTATCATTTTATTCCATCCCACC
456 CATAAGTATTTGTATAAGCAATGCCAAATCACAAATTAATCATTATCATTTTATTCCATCCCACC
60011769 TTATAACTGAATATATGCCACTTCATTATTGAAATAGTTTTCCAGCCAATTCAAATTTGTTTTAC
521 TTATAACTGAATATATGCCACTTCATTATTGAAATAGTTTTCCAGCCAATTCAAATTTGTTTTAC
60011834 CTATA
586 CTATA
60011839 CCGAAAACAAGTTTGTTTAGACAACAACTCACTTACAACTTATCTCAATCATTTTACAAGTTTAT
1 CCGAAAACAAGTTTGTTTAGACAACAACTCACTTACAACTTATCTCAATCATTTTACAAGTTTAT
60011904 ACACTTCAAATGTTTAAATTATTATACATAAAATATAACATAGTTTTTCCAACATTTTATACACC
66 ACACTTCAAATGTTTAAATTATTATACATAAAATATAACATAGTTTTTCCAACATTTTATACACC
60011969 GCAACCTAATACATACATACTATAATTACCTAATTTTTAATCACATTTACCGAACCTTAATAATA
131 GCAACCTAATACATACATACTATAATTACCTAATTTTTAATCACATTTACCGAACCTTAATAATA
60012034 TAAATTAATAAGTTCAAACAACATATCCAACTTATAACTACTTATTCAGTACATTACCTCACTAT
196 TAAATTAATAAGTTCAAACAACATATCCAACTTATAACTACTTATTCAGTACATTACCTCACTAT
60012099 CACAAACATAATTTGAGCATCTAAAACCCACTCAAAAACATGCACGTAATCACGATTCAACTAAG
261 CACAAACATAATTTGAGCATCTAAAACCCACTCAAAAACATGCACGTAATCACGATTCAACTAAG
*
60012164 TTGAATGAAAATACTTATTAACTAAATAAGATTATTTTTATCATTACAATACATTAACTACATAC
326 TTGAATGAAAATACTTATTAACTAAATAAGATTATTTTTATCATTACAAGACATTAACTACATAC
60012229 AGATATATCCAAAACATAAATATTACCTACCATATGTCAAACATGACAAGTCAAATTATCATATG
391 AGATATATCCAAAACATAAATATTACCTACCATATGTCAAACATGACAAGTCAAATTATCATATG
60012294 CATAAGTATTTGTATAAGCAATGCCAAATCACAAATTAATCATTATCATTTTATTCCATCCCACC
456 CATAAGTATTTGTATAAGCAATGCCAAATCACAAATTAATCATTATCATTTTATTCCATCCCACC
60012359 TTATAACTGAATATATGCCACTTCATTATTGAAATAGTTTTCCAGCCAATTCAAATTTGTTTTAC
521 TTATAACTGAATATATGCCACTTCATTATTGAAATAGTTTTCCAGCCAATTCAAATTTGTTTTAC
60012424 CTATA
586 CTATA
60012429 CC-AAAAC
1 CCGAAAAC
60012436 CTTAGCCAAA
Statistics
Matches: 594, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
589 5 0.01
590 589 0.99
ACGTcount: A:0.41, C:0.20, G:0.06, T:0.33
Consensus pattern (590 bp):
CCGAAAACAAGTTTGTTTAGACAACAACTCACTTACAACTTATCTCAATCATTTTACAAGTTTAT
ACACTTCAAATGTTTAAATTATTATACATAAAATATAACATAGTTTTTCCAACATTTTATACACC
GCAACCTAATACATACATACTATAATTACCTAATTTTTAATCACATTTACCGAACCTTAATAATA
TAAATTAATAAGTTCAAACAACATATCCAACTTATAACTACTTATTCAGTACATTACCTCACTAT
CACAAACATAATTTGAGCATCTAAAACCCACTCAAAAACATGCACGTAATCACGATTCAACTAAG
TTGAATGAAAATACTTATTAACTAAATAAGATTATTTTTATCATTACAAGACATTAACTACATAC
AGATATATCCAAAACATAAATATTACCTACCATATGTCAAACATGACAAGTCAAATTATCATATG
CATAAGTATTTGTATAAGCAATGCCAAATCACAAATTAATCATTATCATTTTATTCCATCCCACC
TTATAACTGAATATATGCCACTTCATTATTGAAATAGTTTTCCAGCCAATTCAAATTTGTTTTAC
CTATA
Found at i:60024860 original size:17 final size:17
Alignment explanation
Indices: 60024838--60024872 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
60024828 TTGCATGGAG
60024838 TGAAACTATCTATTGTT
1 TGAAACTATCTATTGTT
60024855 TGAAACTATCTATTGTT
1 TGAAACTATCTATTGTT
60024872 T
1 T
60024873 CGAATAGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.49
Consensus pattern (17 bp):
TGAAACTATCTATTGTT
Found at i:60027415 original size:42 final size:43
Alignment explanation
Indices: 60027313--60027415 Score: 111
Period size: 43 Copynumber: 2.4 Consensus size: 43
60027303 ATCTGAGCCT
* * * *
60027313 ATTGAGCGGTCCGAGTTCGTGATATGTATGAGATTCCGAACTT
1 ATTGAGTGGTCCGAGTTCGTGAGATATATGAGATTCCGAACTC
* * *
60027356 GTTGAGTGGTCCAAGTTCGTGAGATATATG-GCA-TCCGAGCTC
1 ATTGAGTGGTCCGAGTTCGTGAGATATATGAG-ATTCCGAACTC
*
60027398 ATTGAGTGGTCTGAGTTC
1 ATTGAGTGGTCCGAGTTC
60027416 ATTATGGATG
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
42 23 0.47
43 26 0.53
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (43 bp):
ATTGAGTGGTCCGAGTTCGTGAGATATATGAGATTCCGAACTC
Found at i:60027446 original size:43 final size:43
Alignment explanation
Indices: 60027386--60027468 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
60027376 GAGATATATG
*
60027386 GCATCCGAGCTCATTGAGTGGTCTGAGTTCATTATGGATGCGA
1 GCATCCGAGCTCATTGAGTGGTCCGAGTTCATTATGGATGCGA
* *
60027429 GCATCCGAGCTCGTTGAGTGGTCCGAGTTCATTGTGGATG
1 GCATCCGAGCTCATTGAGTGGTCCGAGTTCATTATGGATG
60027469 TGTGACTTAG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.18, C:0.19, G:0.33, T:0.30
Consensus pattern (43 bp):
GCATCCGAGCTCATTGAGTGGTCCGAGTTCATTATGGATGCGA
Found at i:60032574 original size:40 final size:40
Alignment explanation
Indices: 60032530--60032721 Score: 267
Period size: 40 Copynumber: 4.8 Consensus size: 40
60032520 CCAGCATGAT
* * * * *
60032530 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
60032570 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
60032610 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
60032650 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
60032690 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
60032722 CTCAATTCTC
Statistics
Matches: 133, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 133 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:60034171 original size:47 final size:47
Alignment explanation
Indices: 60034102--60034226 Score: 196
Period size: 47 Copynumber: 2.7 Consensus size: 47
60034092 CTTCGGGGCT
* * * *
60034102 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATTAGCCACTCGGCCC
* *
60034149 TATCACATATATACACTTTCACATTCATCACATTAGCCATTCGGCCT
1 TATCACATATATACACTTTCACATTCATCACATTAGCCACTCGGCCC
60034196 TATCACATATATACACTTTCACATTCATCAC
1 TATCACATATATACACTTTCACATTCATCAC
60034227 TCAATTTTAC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.29, C:0.32, G:0.06, T:0.33
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATTAGCCACTCGGCCC
Found at i:60034178 original size:25 final size:25
Alignment explanation
Indices: 60034150--60034226 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
60034140 ACTCGGCCCT
60034150 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
* * * *
60034175 ATCACAT-TA-GC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
60034197 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
60034222 ATCAC
1 ATCAC
60034227 TCAATTTTAC
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
22 11 0.28
23 6 0.15
24 6 0.15
25 16 0.41
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:60034448 original size:47 final size:47
Alignment explanation
Indices: 60034377--60034495 Score: 202
Period size: 47 Copynumber: 2.5 Consensus size: 47
60034367 TTTTCACTAT
* *
60034377 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60034426 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60034473 CTTATCACATATATACACTTTCA
1 CTTATCACATATATACACTTTCA
60034496 AATGAATAAT
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
47 60 0.88
49 8 0.12
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:60034611 original size:279 final size:277
Alignment explanation
Indices: 60034100--60034654 Score: 984
Period size: 279 Copynumber: 2.0 Consensus size: 277
60034090 CCCTTCGGGG
*
60034100 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATACAC
* * * ** *
60034165 TTTCACATTCATCACATTAGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACTCA
66 TTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCAAATGAATAACTCA
60034230 ATTTTACGCCATACTATCATTTCATATTCGAATACTCATAAACTTACAATATCACGATTTAGAAT
131 ATTTTACGCCATACTATCATTTCATATTCGAATACTCATAAACTTACAATATCACGATTTAGAAT
60034295 TCAAGTATGGGTTTAATCAATAGCTTATGAGCAACTAAAACAAGTTTTATCCATGTTTACAACAA
196 TCAAGTATGGGTTTAATCAATAGCTTATGAGCAACTAAAACAAGTTTTATCCATGTTTACAACAA
60034360 AATCACATTTTCACTAT
261 AATCACATTTTCACTAT
* * *
60034377 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACAT-T-TATACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATAC
* *
60034442 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCAAATGAATAATT
64 ACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCAAATGAATAACT
60034507 CAATTTTACGCCATACTATCATTTCATATTCGAATACTCATAAACTTACAATATCACGATTTAGA
129 CAATTTTACGCCATACTATCATTTCATATTCGAATACTCATAAACTTACAATATCACGATTTAGA
60034572 ATTCAAGTATGGGTTTAATCAATAGCTTATGAGCAACTAAAACAAGTTTTATCCATGTTTACAAC
194 ATTCAAGTATGGGTTTAATCAATAGCTTATGAGCAACTAAAACAAGTTTTATCCATGTTTACAAC
60034637 AAAATCACATTTTCACTA
259 AAAATCACATTTTCACTA
60034655 CGAGCTGTTT
Statistics
Matches: 264, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
277 10 0.04
278 1 0.00
279 253 0.96
ACGTcount: A:0.34, C:0.24, G:0.08, T:0.34
Consensus pattern (277 bp):
CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATACAC
TTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCAAATGAATAACTCA
ATTTTACGCCATACTATCATTTCATATTCGAATACTCATAAACTTACAATATCACGATTTAGAAT
TCAAGTATGGGTTTAATCAATAGCTTATGAGCAACTAAAACAAGTTTTATCCATGTTTACAACAA
AATCACATTTTCACTAT
Found at i:60043854 original size:49 final size:47
Alignment explanation
Indices: 60043782--60044001 Score: 173
Period size: 49 Copynumber: 4.6 Consensus size: 47
60043772 ATATGTTGTC
* * *
60043782 GATGCCATGTCTCGGACATGGTCTTACACTGGCTATCATCATCAAGGTT
1 GATG-CATGTCCCAGACATGGTCTTACACTAGCTATCATC-TCAAGGTT
* * *
60043831 GATGCCATGTCCCAAACATGGTCTTATACTAGCTCTCATCT-ATAGGTGCT
1 GATG-CATGTCCCAGACATGGTCTTACACTAGCTATCATCTCA-AGGT--T
* * **
60043881 GATGCATGTCCCAGACAT-GTCTTACACTAGC-A-CAACTCTTA-GCC
1 GATGCATGTCCCAGACATGGTCTTACACTAGCTATCATCTC-AAGGTT
* * * * **
60043925 GATGCGTGACCCAGACA-CGTCTTACACTGGCTATCATCATCGGGGCTT
1 GATGCATGTCCCAGACATGGTCTTACACTAGCTATCATC-TCAAGG-TT
60043973 GATGCATGTCCCAGACATGGTCTTACACT
1 GATGCATGTCCCAGACATGGTCTTACACT
60044002 CGCACACAAG
Statistics
Matches: 135, Mismatches: 24, Indels: 24
0.74 0.13 0.13
Matches are distributed among these distances:
44 27 0.20
45 1 0.01
46 8 0.06
47 5 0.04
48 32 0.24
49 57 0.42
50 5 0.04
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGGTCTTACACTAGCTATCATCTCAAGGTT
Found at i:60044879 original size:19 final size:20
Alignment explanation
Indices: 60044840--60044880 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
60044830 GGCTTAGGTA
*
60044840 TTATTATATTACACCTTATG
1 TTATTATATTACACCTAATG
*
60044860 TTATTA-ATTTCACCTAATG
1 TTATTATATTACACCTAATG
60044879 TT
1 TT
60044881 GACTTTTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.29, C:0.15, G:0.05, T:0.51
Consensus pattern (20 bp):
TTATTATATTACACCTAATG
Found at i:60053292 original size:55 final size:55
Alignment explanation
Indices: 60053221--60053357 Score: 211
Period size: 55 Copynumber: 2.5 Consensus size: 55
60053211 CCCGTGCCCT
* * *
60053221 TACCCTATGTGCAACACTGACTTTAAAACACGGCCATGGCACACGCCCGTGTGGCC
1 TACCCT-TGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTCTGGCC
* *
60053277 TGCCCTTGTACAACACTGACTTTAAAACACGGCCATGACATACGCCCGTCTGGCC
1 TACCCTTGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTCTGGCC
*
60053332 TACCCGTGTACAACACTGACTTTAAA
1 TACCCTTGTACAACACTGACTTTAAA
60053358 TTTTAAGTGC
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
55 69 0.93
56 5 0.07
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.22
Consensus pattern (55 bp):
TACCCTTGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTCTGGCC
Found at i:60054174 original size:49 final size:47
Alignment explanation
Indices: 60054114--60054432 Score: 222
Period size: 49 Copynumber: 6.7 Consensus size: 47
60054104 GGGATATGTT
*
60054114 GCCGATGCCATGTCCCGGACATGGTCTTACACTGGCTATCATCATCGAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATCATCGAG
** * * * *
60054163 GTTGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCATCTATACG-T
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATC-AT-CGAG
* * * * * *
60054213 GCTGATGCATGTCCCTGACATTTCTTACACTAGC-A-CAAC-TCTTA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCATC-GAG
* * * *
60054257 GCCGATGCGTGTCCCAGACACGTCTTACACTAGCTATCATCGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCATCGAG
* * * *
60054304 GTCGATGCATGTCCCAAACATGTCTTACACTGGC-ACTCATTC-TCTAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTA-TCA-TCATCGAG
* * * * * * *
60054351 GTCAATATCATGTCCCAGACATGGTCTTCCACTGGGTATCAT-ATTGTG
1 GCCGAT-GCATGTCCCAGACAT-GTCTTACACTGGCTATCATCATCGAG
*
60054399 GCCGATGCATGTCCCAGACATGTCTGACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
60054433 ACACAAGTAA
Statistics
Matches: 213, Mismatches: 43, Indels: 31
0.74 0.15 0.11
Matches are distributed among these distances:
43 1 0.00
44 30 0.14
45 1 0.00
46 18 0.08
47 56 0.26
48 32 0.15
49 64 0.30
50 9 0.04
51 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCATCGAG
Found at i:60056488 original size:18 final size:18
Alignment explanation
Indices: 60056453--60056555 Score: 93
Period size: 18 Copynumber: 5.8 Consensus size: 18
60056443 TCAGTATCAG
* *
60056453 TCAGTCATT-AGTATTAA
1 TCAGTTATTCAGTAATAA
60056470 TCAGTTATTCAGTAATAA
1 TCAGTTATTCAGTAATAA
* * * *
60056488 TAATTTATTCAGTAACAG
1 TCAGTTATTCAGTAATAA
* * *
60056506 TC-GTTTATTCAGCAACAG
1 TCAG-TTATTCAGTAATAA
*
60056524 TCAATTATTCAGTAATAA
1 TCAGTTATTCAGTAATAA
60056542 TCAGTTATTCAGTA
1 TCAGTTATTCAGTA
60056556 CCTTTATTTA
Statistics
Matches: 69, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
17 8 0.12
18 61 0.88
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.39
Consensus pattern (18 bp):
TCAGTTATTCAGTAATAA
Found at i:60056750 original size:44 final size:44
Alignment explanation
Indices: 60056700--60056786 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
60056690 CGGATTAATC
*
60056700 CAAAGTA-ATAGAAACAGTACGACATATG-AAGTGCCTCATCGACA
1 CAAAGTAGA-AGAAACAGTAAGACA-ATGTAAGTGCCTCATCGACA
* * *
60056744 CAAAGTAGAAGTAACAGTAAGACACTGTTAGTGCCTCATCGAC
1 CAAAGTAGAAGAAACAGTAAGACAATGTAAGTGCCTCATCGAC
60056787 CCATGGTCGA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
43 2 0.05
44 34 0.92
45 1 0.03
ACGTcount: A:0.40, C:0.21, G:0.20, T:0.20
Consensus pattern (44 bp):
CAAAGTAGAAGAAACAGTAAGACAATGTAAGTGCCTCATCGACA
Found at i:60056916 original size:20 final size:20
Alignment explanation
Indices: 60056891--60056930 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
60056881 TTTAGTTTTC
60056891 AATCAGTATATATT-TCAATT
1 AATCAG-ATATATTCTCAATT
60056911 AATCAGATATATTCTCAATT
1 AATCAGATATATTCTCAATT
60056931 CAATATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.42
Consensus pattern (20 bp):
AATCAGATATATTCTCAATT
Found at i:60056938 original size:16 final size:15
Alignment explanation
Indices: 60056898--60056947 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 15
60056888 TTCAATCAGT
60056898 ATATATTTCAATTAATCA
1 ATATATTTCAA-T--TCA
60056916 GATATATTCTCAATTCA
1 -ATATATT-TCAATTCA
60056933 ATATATTTCAATTCA
1 ATATATTTCAATTCA
60056948 CTTTATATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 8 0.27
16 7 0.23
17 3 0.10
19 8 0.27
20 4 0.13
ACGTcount: A:0.40, C:0.14, G:0.02, T:0.44
Consensus pattern (15 bp):
ATATATTTCAATTCA
Found at i:60058886 original size:27 final size:27
Alignment explanation
Indices: 60058835--60058941 Score: 121
Period size: 27 Copynumber: 4.0 Consensus size: 27
60058825 TGGCTGCCAA
** *
60058835 AATAGATAA-TGTTACAGAGTCACCAG
1 AATAGATAATTGTGGCAGAGCCACCAG
60058861 AATAGATAATTGTGGCAGAGCCACCAG
1 AATAGATAATTGTGGCAGAGCCACCAG
* *
60058888 AACAGAT-ATATGTGGCAGAGCAACCAG
1 AATAGATAAT-TGTGGCAGAGCCACCAG
*
60058915 -ATCAGATAATTGTGGCATAGCCACCAG
1 AAT-AGATAATTGTGGCAGAGCCACCAG
60058942 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 12 0.17
27 55 0.80
28 2 0.03
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (27 bp):
AATAGATAATTGTGGCAGAGCCACCAG
Found at i:60060385 original size:24 final size:24
Alignment explanation
Indices: 60060349--60060395 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
60060339 AACACTGTTC
*
60060349 TCCCTAATTAGCTCCTAAATCCTA
1 TCCCTAATCAGCTCCTAAATCCTA
* *
60060373 TCCCTTATCAGCTCCTAAGTCCT
1 TCCCTAATCAGCTCCTAAATCCT
60060396 CTCCTGACAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.23, C:0.36, G:0.06, T:0.34
Consensus pattern (24 bp):
TCCCTAATCAGCTCCTAAATCCTA
Found at i:60071093 original size:19 final size:19
Alignment explanation
Indices: 60071069--60071106 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
60071059 TGGACTGCCA
60071069 CATGAAGATACACGAGAAC
1 CATGAAGATACACGAGAAC
*
60071088 CATGAAGATACTCGAGAAC
1 CATGAAGATACACGAGAAC
60071107 ATCTTAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.21, G:0.21, T:0.13
Consensus pattern (19 bp):
CATGAAGATACACGAGAAC
Found at i:60080850 original size:11 final size:11
Alignment explanation
Indices: 60080833--60080862 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
60080823 GCTTGTATTA
60080833 AATTTTTATAT
1 AATTTTTATAT
*
60080844 TATTTTTATAT
1 AATTTTTATAT
60080855 AATTTTTA
1 AATTTTTA
60080863 AATATATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
AATTTTTATAT
Found at i:60081018 original size:30 final size:30
Alignment explanation
Indices: 60080984--60081043 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
60080974 ACTTAACAAG
* *
60080984 AAAATGCCTCTAAAATAATAACAAATTTAA
1 AAAATGCCCCTAAAATAATAACAAAATTAA
60081014 AAAATGCCCCTAAAATAATAACAAAATTAA
1 AAAATGCCCCTAAAATAATAACAAAATTAA
60081044 CAATAAAACA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.15, G:0.03, T:0.23
Consensus pattern (30 bp):
AAAATGCCCCTAAAATAATAACAAAATTAA
Found at i:60083278 original size:30 final size:29
Alignment explanation
Indices: 60083230--60083290 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
60083220 CAAGTAGCCG
60083230 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
*
60083259 AAGCTAGTTTAAATTGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
60083289 AA
1 AA
60083291 ACTTCCTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.26
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:60085189 original size:8 final size:8
Alignment explanation
Indices: 60085176--60085200 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
60085166 CTTGAGAATG
60085176 CAACATAT
1 CAACATAT
60085184 CAACATAT
1 CAACATAT
60085192 CAACATAT
1 CAACATAT
60085200 C
1 C
60085201 CTCGAGTGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (8 bp):
CAACATAT
Found at i:60090585 original size:29 final size:30
Alignment explanation
Indices: 60090552--60090609 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
60090542 AGTAGTCGAA
60090552 GCTAG-TTAAATCGCACACTTAGTGCCAAG
1 GCTAGTTTAAATCGCACACTTAGTGCCAAG
60090581 GCTAGTTTAAATCGCACACTTAGTGCCAA
1 GCTAGTTTAAATCGCACACTTAGTGCCAA
60090610 ACTTCCTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 5 0.18
30 23 0.82
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (30 bp):
GCTAGTTTAAATCGCACACTTAGTGCCAAG
Found at i:60096075 original size:53 final size:53
Alignment explanation
Indices: 60095999--60096103 Score: 147
Period size: 53 Copynumber: 2.0 Consensus size: 53
60095989 ATAAACTACG
* * * *
60095999 ATAAGGCAAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC
1 ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTC
* * *
60096052 ATAAGGCAAGGATATCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
60096104 TAAAAAGGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.20
Consensus pattern (53 bp):
ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTC
Found at i:60099248 original size:40 final size:40
Alignment explanation
Indices: 60099202--60099426 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
60099192 CTTGCACAAG
* * * *
60099202 GCCTTCGGGTCTTAGCCCGAATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
60099242 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
60099282 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
60099322 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * * *
60099362 GCCTTCAGATCTTAGTCCGGTTGTAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
60099403 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
60099427 CATTCGAATA
Statistics
Matches: 154, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 126 0.82
41 27 0.18
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:60099297 original size:80 final size:80
Alignment explanation
Indices: 60099166--60099426 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
60099156 CTCAACTAAT
* * * * * * *
60099166 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGAATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGT
*
60099229 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * * *
60099244 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAG
*
60099308 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * * *
60099324 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCAGATCTTAGTCCGGTTGTAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGT
*
60099389 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
60099405 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
60099427 CATTCGAATA
Statistics
Matches: 152, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
78 12 0.08
79 16 0.11
80 91 0.60
81 33 0.22
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGT
CACTAGCACAAATGC
Found at i:60099389 original size:120 final size:120
Alignment explanation
Indices: 60099166--60099426 Score: 298
Period size: 120 Copynumber: 2.2 Consensus size: 120
60099156 CTCAACTAAT
* * *
60099166 CTTCGGGATTTAG-CCGGATATAACTACTTGCACAAGGCCTTCGGGTCTTAGCCCGAATGTGGTC
1 CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGGGTCTTAGCCCGAATATAGTC
* * * *
60099230 ACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGC
66 ACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC
* * * *
60099284 CTTCGGGTTTTAGCCCGGATATAA-TCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGATTTAGCCCGGATATAACT-ACTAGCAC-AAGGCCTTCGGGTCTTAGCCCGAATATAG
* * * * *
60099348 -CAACTCGCACGAATGCCTTC-AGATCTTAGTCCGGTTGTAGTCACCTAGCACAAAAGC
64 TC-ACTAGCACAAATGCCTTCGAGA-CTTAGCCCGGATATAGTCACCTAGCACAAAAGC
*
60099405 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGATTTAGCCCGGATAT
60099427 CATTCGAATA
Statistics
Matches: 119, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
118 13 0.11
119 19 0.16
120 55 0.46
121 32 0.27
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (120 bp):
CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGGGTCTTAGCCCGAATATAGTC
ACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC
Found at i:60105778 original size:44 final size:44
Alignment explanation
Indices: 60105574--60106732 Score: 1933
Period size: 44 Copynumber: 25.9 Consensus size: 44
60105564 ATGATAGTAA
** * *
60105574 GGCCTAATGGCCGATGTGATGAACATGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA---CATAG
*
60105621 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAC---ATAG
* * * ** *
60105668 GGCCTAATGGCCGATGTCATGAACGTGAAAGTATAAATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGT--ATAT-ACATAG
*
60105715 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT-G
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
***
60105758 TGATATAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
1 -GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
60105803 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
60105847 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
60105891 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
60105935 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
60105979 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
60106023 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
60106067 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
60106111 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
60106155 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
60106199 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
60106243 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
60106287 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
60106331 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
60106375 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
60106419 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
60106463 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
60106507 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
* *
60106551 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT-ACATAG
*
60106598 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA---CATAG
* *
60106647 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA---CATAG
*
60106694 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
60106733 TATGTGACAG
Statistics
Matches: 1072, Mismatches: 26, Indels: 28
0.95 0.02 0.02
Matches are distributed among these distances:
44 818 0.76
45 5 0.00
46 6 0.01
47 202 0.19
49 41 0.04
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (44 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATAG
Found at i:60107383 original size:83 final size:83
Alignment explanation
Indices: 60107244--60107411 Score: 311
Period size: 83 Copynumber: 2.0 Consensus size: 83
60107234 ATATGATGAG
*
60107244 ATGTGCAGATTCGGTAAAGGGATGGTATGCCCGAAGGAAGAGTGAAATAAAAATACGAATAACTA
1 ATGTGCAGATTCGGTAAAGGGATGGTATGCCCGAAGGAAGAGTGAAATAAAAATACGAACAACTA
60107309 TGTTATAATTTGATTGTT
66 TGTTATAATTTGATTGTT
60107327 ATGTGC-GTATTCGGTAAAGGGATGGTATGCCCGAAGGAAGAGTGAAATAAAAATACGAACAACT
1 ATGTGCAG-ATTCGGTAAAGGGATGGTATGCCCGAAGGAAGAGTGAAATAAAAATACGAACAACT
60107391 ATGTTATAATTTGATTGTT
65 ATGTTATAATTTGATTGTT
60107410 AT
1 AT
60107412 CTGTTGACAC
Statistics
Matches: 83, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
82 1 0.01
83 82 0.99
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29
Consensus pattern (83 bp):
ATGTGCAGATTCGGTAAAGGGATGGTATGCCCGAAGGAAGAGTGAAATAAAAATACGAACAACTA
TGTTATAATTTGATTGTT
Found at i:60112256 original size:40 final size:41
Alignment explanation
Indices: 60112192--60112307 Score: 137
Period size: 40 Copynumber: 2.9 Consensus size: 41
60112182 NNNNNNNTCG
*
60112192 CTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG-CAA
1 CTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTCAA
* * * * * *
60112232 CTCGCACGAATGCCTTCGGATCTTAGTCCGGTTGTAGTCAC
1 CTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTCAA
*
60112273 CTAGCACAAAAGCCTTCGGGA-CTTAGCCCGGATAT
1 CTAGCACAAATGCCTTC-GGATCTTAGCCCGGATAT
60112308 CATTCGAATA
Statistics
Matches: 61, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
40 31 0.51
41 27 0.44
42 3 0.05
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (41 bp):
CTAGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTCAA
Found at i:60114262 original size:47 final size:46
Alignment explanation
Indices: 60114189--60114413 Score: 202
Period size: 47 Copynumber: 4.8 Consensus size: 46
60114179 ATTTGTGTGT
* * * *
60114189 GAGCTAGTGTAAGACATGTCTAGGACAT-GCATCGGCCACATTATGG
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCTACA-GATGG
* ** * *
60114235 GAGCCAGTGTAAGACTATGTCTGGGACATGGCATCGACATTGAGACGA
1 GAGCCAGTGTAAGAC-ATGTCTGGGACATGGCATCGGC-TACAGATGG
* * *
60114283 GTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCTACGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCTAC-AGATGG
* * ** ** *
60114329 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGAGATGT
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCTACAGATGG
*
60114376 GAGCCAGTGTAAGACTATGTCTAGGACATGGCATCGGC
1 GAGCCAGTGTAAGAC-ATGTCTGGGACATGGCATCGGC
60114414 ACCTTACCCA
Statistics
Matches: 143, Mismatches: 29, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 37 0.26
47 75 0.52
48 29 0.20
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCTACAGATGG
Found at i:60114352 original size:94 final size:93
Alignment explanation
Indices: 60114189--60114413 Score: 299
Period size: 94 Copynumber: 2.4 Consensus size: 93
60114179 ATTTGTGTGT
* * *
60114189 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGGGAGCCAGTGTAAGACTATG
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATG
*
60114254 TCTGGGACATGGCATCGACATTGAGACGA
66 TCTGGGACATGGCATCAAC-TTGAGACGA
* * * * *
60114283 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCAT
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-ATGATGAGAGCCAGTGTAAGACCAT
* *
60114347 GTCTGGGACATGGCATCAACTTGAGATGT
65 GTCTGGGACATGGCATCAACTTGAGACGA
*
60114376 GAGCCAGTGTAAGACTATGTCTAGGACATGGCATCGGC
1 GAGCTAGTGTAAGAC-ATGTCTAGGACAT-GCATCGGC
60114414 ACCTTACCCA
Statistics
Matches: 114, Mismatches: 14, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
93 20 0.18
94 85 0.75
95 9 0.08
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (93 bp):
GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCAACTTGAGACGA
Found at i:60117634 original size:40 final size:41
Alignment explanation
Indices: 60117579--60117762 Score: 223
Period size: 40 Copynumber: 4.5 Consensus size: 41
60117569 TATTCGGATG
* *
60117579 ATATCCGGGCTAAGTCCCGCAGACATTTGTG-GAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTTACT
*
60117619 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGA--AGTTACT
* ** * *
60117662 ATACCCGGGCTAAGTCCCGAAGGCATTCATGC-TAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTTACT
* *
60117702 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCG-AGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTTACT
*
60117742 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
60117763 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
39 13 0.11
40 73 0.59
41 2 0.02
43 35 0.28
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTTACT
Found at i:60117722 original size:83 final size:80
Alignment explanation
Indices: 60117583--60117763 Score: 238
Period size: 83 Copynumber: 2.2 Consensus size: 80
60117573 CGGATGATAT
* ** * * *
60117583 CCGGGCTAAGTCCCGCAGACATTTGTGGAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGACATTCATGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
60117648 TGCGAGTAGTTGCTATAC
66 TGC--G-AGTTGCTATAC
* *
60117666 CCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGACATTCATGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
*
60117731 TGCGAGTTGCTATAT
66 TGCGAGTTGCTATAC
*
60117746 CC-GGCTAAATCCCGAAGA
1 CCGGGCTAAGTCCCGAAGA
60117764 TACTTGGGTT
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 14 0.16
80 12 0.14
81 1 0.01
83 60 0.69
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGACATTCATGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGCTATAC
Found at i:60127911 original size:37 final size:37
Alignment explanation
Indices: 60127861--60127939 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
60127851 TTATTACGAA
* ** *
60127861 GTCTTACCCGGACATAATCTTCACACAAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACAAAGTCATCGG
**
60127898 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACAAAGTCATCGG
60127935 GTCTT
1 GTCTT
60127940 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACAAAGTCATCGG
Found at i:60128132 original size:49 final size:49
Alignment explanation
Indices: 60128060--60128538 Score: 744
Period size: 49 Copynumber: 10.0 Consensus size: 49
60128050 CTTCGGGACT
* * * *
60128060 TATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCC
* * *
60128107 TGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCC
60128156 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCC
*
60128205 TATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTCGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCC
* *
60128252 TATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTCGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCC
* *
60128299 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCC
*
60128346 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCC
*
60128395 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCC
*
60128444 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCC
*
60128493 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCC
60128539 TTACTATCAT
Statistics
Matches: 410, Mismatches: 18, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 183 0.45
48 1 0.00
49 226 0.55
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.31
Consensus pattern (49 bp):
TATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCC
Found at i:60130103 original size:55 final size:54
Alignment explanation
Indices: 60130016--60130270 Score: 269
Period size: 55 Copynumber: 4.8 Consensus size: 54
60130006 ATTAGGGTTT
*
60130016 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGCTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG-TTTCTAAGGC
* * * * *
60130071 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
60130126 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
60130179 AAGTATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
60130228 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
60130271 GTACCCGCGT
Statistics
Matches: 170, Mismatches: 23, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
49 39 0.23
52 6 0.04
53 40 0.24
54 13 0.08
55 68 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:60130222 original size:108 final size:109
Alignment explanation
Indices: 60130023--60130223 Score: 316
Period size: 108 Copynumber: 1.8 Consensus size: 109
60130013 TTTAAGGATA
*
60130023 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGCTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGC-TTCTAAGGCAAGGAAACCATGTAAGA
*
60130088 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
65 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
60130133 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGCAAGTATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGCTTC-TAAGGCAAGGAAACCATGTAAGA
*
60130196 CCATGTCAAGACATGGCAATGGTAAGTT
65 CCATGTCAAGACATGGCAATGATAAGTT
60130224 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.55
109 8 0.10
110 27 0.32
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.23
Consensus pattern (109 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGCTTCTAAGGCAAGGAAACCATGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:60140010 original size:22 final size:22
Alignment explanation
Indices: 60139982--60140023 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
60139972 TCGATGACTT
60139982 GTTTGATCAATTGAGGGGAGTC
1 GTTTGATCAATTGAGGGGAGTC
60140004 GTTTGATCAATTGAGGGGAG
1 GTTTGATCAATTGAGGGGAG
60140024 CCACCGTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.24, C:0.07, G:0.38, T:0.31
Consensus pattern (22 bp):
GTTTGATCAATTGAGGGGAGTC
Found at i:60144795 original size:28 final size:28
Alignment explanation
Indices: 60144755--60144810 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
60144745 TATATCATGG
60144755 CCTAAGTATAAAATGTGGAATGTGCTAA
1 CCTAAGTATAAAATGTGGAATGTGCTAA
60144783 CCTAAGTATAAAATGTGGAATGTGCTAA
1 CCTAAGTATAAAATGTGGAATGTGCTAA
60144811 TGATAACCCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.29
Consensus pattern (28 bp):
CCTAAGTATAAAATGTGGAATGTGCTAA
Found at i:60153908 original size:8 final size:8
Alignment explanation
Indices: 60153895--60153924 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
60153885 AGTCCCTAAT
60153895 TCACAAAA
1 TCACAAAA
60153903 TCACAAAA
1 TCACAAAA
60153911 TCACAAAA
1 TCACAAAA
60153919 TACACA
1 T-CACA
60153925 TAATTTGCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13
Consensus pattern (8 bp):
TCACAAAA
Found at i:60162180 original size:43 final size:43
Alignment explanation
Indices: 60162133--60162233 Score: 114
Period size: 43 Copynumber: 2.3 Consensus size: 43
60162123 AAGAACATGA
* * * * *
60162133 TCTTTAGCAACATTTTT-ATGAGAAGTGCCGCTAAAGGTCATAT
1 TCTTTAGCAGCATTTTTAAT-AGAAGCGCCACCAAAGATCATAT
* *
60162176 TCTTTAGCGGCATTTTTAATAGAAGCGCCACCAAAGATCATGT
1 TCTTTAGCAGCATTTTTAATAGAAGCGCCACCAAAGATCATAT
*
60162219 TATTTAGCAGCATTT
1 TCTTTAGCAGCATTT
60162234 GTAGGAAAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
43 46 0.96
44 2 0.04
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.35
Consensus pattern (43 bp):
TCTTTAGCAGCATTTTTAATAGAAGCGCCACCAAAGATCATAT
Found at i:60165578 original size:40 final size:40
Alignment explanation
Indices: 60165504--60165685 Score: 294
Period size: 40 Copynumber: 4.6 Consensus size: 40
60165494 AACCCAAGTA
* *
60165504 CCTTCGGGATTTAG-CCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
60165543 CCTTCGAGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
60165583 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
60165623 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
60165663 CCTTCGGGACTTAGCCCAGATAT
1 CCTTCGGGACTTAGCCCGGATAT
60165686 CATCCGAATA
Statistics
Matches: 133, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 12 0.09
40 121 0.91
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:60165965 original size:51 final size:51
Alignment explanation
Indices: 60165908--60166015 Score: 207
Period size: 51 Copynumber: 2.1 Consensus size: 51
60165898 ATTCCAGTAG
60165908 AATCATTATATCACCGTTTATTTGTTATGCTTATATGTCATGACTTAATCA
1 AATCATTATATCACCGTTTATTTGTTATGCTTATATGTCATGACTTAATCA
*
60165959 AGTCATTATATCACCGTTTATTTGTTATGCTTATATGTCATGACTTAATCA
1 AATCATTATATCACCGTTTATTTGTTATGCTTATATGTCATGACTTAATCA
60166010 AATCAT
1 AATCAT
60166016 AAACTAAGTT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.30, C:0.16, G:0.10, T:0.44
Consensus pattern (51 bp):
AATCATTATATCACCGTTTATTTGTTATGCTTATATGTCATGACTTAATCA
Found at i:60167112 original size:13 final size:13
Alignment explanation
Indices: 60167094--60167119 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
60167084 ATTTTTATTT
60167094 TTAACATAAAATA
1 TTAACATAAAATA
60167107 TTAACATAAAATA
1 TTAACATAAAATA
60167120 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:60171283 original size:105 final size:105
Alignment explanation
Indices: 60171094--60171304 Score: 370
Period size: 105 Copynumber: 2.0 Consensus size: 105
60171084 GGAGACAAGA
*
60171094 AGTTTGTGCAACTTTGAAACTATGTTATCCATTTTGAAAAAAAAAGTTTGAGAAAAAGATTAGAG
1 AGTTTGTGCAACTTTGAAACTATGTTACCCATTTTGAAAAAAAAAGTTTGAGAAAAAGATTAGAG
* *
60171159 TACTTTTAAAGCAATGAAAATGAGATGGGAGAG-AAGAGT
66 TACTTTTAAAGCAAAGAAAAAGAGATGGGAGAGAAAGAGT
60171198 AGTTTGTGCAACTTTGAAACTATGTTACCCATTTTGAAAAAAAAAAGTTTGAGAAAAAGATTAGA
1 AGTTTGTGCAACTTTGAAACTATGTTACCCATTTTG-AAAAAAAAAGTTTGAGAAAAAGATTAGA
*
60171263 GTTCTTTTAAAGCAAAGAAAAAGAGATGGGAGAGAAAGAGT
65 GTACTTTTAAAGCAAAGAAAAAGAGATGGGAGAGAAAGAGT
60171304 A
1 A
60171305 AAAAGGTTTT
Statistics
Matches: 101, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
104 35 0.35
105 59 0.58
106 7 0.07
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.27
Consensus pattern (105 bp):
AGTTTGTGCAACTTTGAAACTATGTTACCCATTTTGAAAAAAAAAGTTTGAGAAAAAGATTAGAG
TACTTTTAAAGCAAAGAAAAAGAGATGGGAGAGAAAGAGT
Found at i:60172840 original size:58 final size:57
Alignment explanation
Indices: 60172775--60173093 Score: 232
Period size: 58 Copynumber: 5.5 Consensus size: 57
60172765 AGCTTCGGCT
* * * *
60172775 ATCGAATATGAAAAGGGATGGTGAAGACAATCAACTATGAAAAGGGATGGTGATGACC
1 ATCGAATATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGATGGT-ATGACC
* ** * * * * *
60172833 ATCGAATATGAAAAGGGATAGTTTCGGCTATCGATTATGAAAAGGGATAGCT-TCAGCT
1 ATCGAATATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGAT-GGTATGA-CC
* * ** *** * * * * *
60172891 ATCGATTATGAAAAGGGATAGTTTCTG-TTGTCGATTACGAAAAGGGATAGCTTTGGCT
1 ATCGAATATGAAAAGGGATGGTGAC-GACCATCGATTATGAAAAGGGAT-GGTATGACC
* * * * **
60172949 ATC-AATTATGAAAAGGGATGGTGATGACCATCAACTATGAAAAAGGATGGTGACAACC
1 ATCGAA-TATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGATGGT-ATGACC
*
60173007 ATC-AACTATGAAAAGGGATGGTGACGACCATCGATTAATGAAAAGGGATGGTTTTGACC
1 ATCGAA-TATGAAAAGGGATGGTGACGACCATCGATT-ATGAAAAGGGATGG-TATGACC
*
60173066 ATCGAATATGAAAAGGGATGGTTACGAC
1 ATCGAATATGAAAAGGGATGGTGACGAC
60173094 TATTGTTTAG
Statistics
Matches: 207, Mismatches: 44, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
57 6 0.03
58 154 0.74
59 44 0.21
60 3 0.01
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.24
Consensus pattern (57 bp):
ATCGAATATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGATGGTATGACC
Found at i:60172859 original size:87 final size:87
Alignment explanation
Indices: 60172761--60173087 Score: 279
Period size: 87 Copynumber: 3.7 Consensus size: 87
60172751 CAATGAACGT
* *
60172761 GGATAGCTTCGGCTATCGAATATGAAAAGGGATGGTGAAGACAATCAACTATGAAAAGGGATGGT
1 GGATAGTTTCGGCTATCGAATATGAAAAGGGATGGTGAAGACCATCAACTATGAAAAGGGATGGT
60172826 GATGACCATCGAATATGAAAAG
66 GATGACCATCGAATATGAAAAG
* * ** * * *
60172848 GGATAGTTTCGGCTATCGATTATGAAAAGGGATAGCTTCAG-CTATCGATTATGAAAAGGGATAG
1 GGATAGTTTCGGCTATCGAATATGAAAAGGGAT-GGTGAAGACCATCAACTATGAAAAGGGAT-G
* ** *** * *
60172912 TTTCTG-TTGTCGATTACGAAAAG
64 GTGATGACCATCGAATATGAAAAG
* *
60172935 GGATAGCTTT-GGCTATC-AATTATGAAAAGGGATGGTGATGACCATCAACTATGAAAAAGGATG
1 GGATAG-TTTCGGCTATCGAA-TATGAAAAGGGATGGTGAAGACCATCAACTATGAAAAGGGATG
**
60172998 GTGACAACCATC-AACTATGAAAAG
64 GTGATGACCATCGAA-TATGAAAAG
* ** * * * ***
60173022 GGATGGTGACGACCATCGATTAATGAAAAGGGATGGTTTTGACCATCGAA-TATGAAAAGGGATG
1 GGATAGTTTCGGCTATCGAAT-ATGAAAAGGGATGGTGAAGACCATC-AACTATGAAAAGGGATG
60173086 GT
64 GT
60173088 TACGACTATT
Statistics
Matches: 185, Mismatches: 44, Indels: 21
0.74 0.18 0.08
Matches are distributed among these distances:
86 8 0.04
87 125 0.68
88 50 0.27
89 2 0.01
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.25
Consensus pattern (87 bp):
GGATAGTTTCGGCTATCGAATATGAAAAGGGATGGTGAAGACCATCAACTATGAAAAGGGATGGT
GATGACCATCGAATATGAAAAG
Found at i:60173088 original size:29 final size:29
Alignment explanation
Indices: 60172775--60173087 Score: 203
Period size: 29 Copynumber: 10.8 Consensus size: 29
60172765 AGCTTCGGCT
* *
60172775 ATCGAATATGAAAAGGGATGGTGAAGACA
1 ATCGAATATGAAAAGGGATGGTGATGACC
60172804 ATC-AACTATGAAAAGGGATGGTGATGACC
1 ATCGAA-TATGAAAAGGGATGGTGATGACC
* * * *
60172833 ATCGAATATGAAAAGGGATAGT-TTCGGCT
1 ATCGAATATGAAAAGGGATGGTGAT-GACC
* * * *
60172862 ATCGATTATGAAAAGGGATAGCT--TCAGCT
1 ATCGAATATGAAAAGGGAT-GGTGATGA-CC
* * ** **
60172891 ATCGATTATGAAAAGGGATAGTTTCTG-TT
1 ATCGAATATGAAAAGGGAT-GGTGATGACC
* * * * * * *
60172920 GTCGATTACGAAAAGGGATAGCT-TTGGCT
1 ATCGAATATGAAAAGGGAT-GGTGATGACC
60172949 ATC-AATTATGAAAAGGGATGGTGATGACC
1 ATCGAA-TATGAAAAGGGATGGTGATGACC
* **
60172978 ATC-AACTATGAAAAAGGATGGTGACAACC
1 ATCGAA-TATGAAAAGGGATGGTGATGACC
*
60173007 ATC-AACTATGAAAAGGGATGGTGACGACC
1 ATCGAA-TATGAAAAGGGATGGTGATGACC
* **
60173036 ATCGATTAATGAAAAGGGATGGTTTTGACC
1 ATCGAAT-ATGAAAAGGGATGGTGATGACC
60173066 ATCGAATATGAAAAGGGATGGT
1 ATCGAATATGAAAAGGGATGGT
60173088 TACGACTATT
Statistics
Matches: 235, Mismatches: 37, Indels: 24
0.79 0.12 0.08
Matches are distributed among these distances:
28 8 0.03
29 197 0.84
30 29 0.12
31 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.25
Consensus pattern (29 bp):
ATCGAATATGAAAAGGGATGGTGATGACC
Found at i:60173806 original size:17 final size:17
Alignment explanation
Indices: 60173786--60173829 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 17
60173776 ATGAGTGGTC
60173786 AATAAATATGCGACATT
1 AATAAATATGCGACATT
60173803 AATAAACTTATATGCGACATT
1 AAT-AA---ATATGCGACATT
60173824 AATAAA
1 AATAAA
60173830 CTTACTCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
17 4 0.17
18 2 0.09
20 2 0.09
21 15 0.65
ACGTcount: A:0.50, C:0.11, G:0.09, T:0.30
Consensus pattern (17 bp):
AATAAATATGCGACATT
Found at i:60173817 original size:21 final size:21
Alignment explanation
Indices: 60173791--60173833 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
60173781 TGGTCAATAA
60173791 ATATGCGACATTAATAAACTT
1 ATATGCGACATTAATAAACTT
60173812 ATATGCGACATTAATAAACTT
1 ATATGCGACATTAATAAACTT
60173833 A
1 A
60173834 CTCATTTGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33
Consensus pattern (21 bp):
ATATGCGACATTAATAAACTT
Found at i:60176646 original size:40 final size:40
Alignment explanation
Indices: 60176570--60176753 Score: 273
Period size: 40 Copynumber: 4.6 Consensus size: 40
60176560 CAAACCCAAG
* *
60176570 TGCCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAA
* *
60176609 TGCCTTCGGGTCTTAGCTCGGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
* *
60176649 AGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
*
60176689 TGCCTTCGGGACTTAGCCCGAATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
*
60176729 TGCCTTCGGGACTTAGCTCGGATAT
1 TGCCTTCGGGACTTAGCCCGGATAT
60176754 CATTCGAATA
Statistics
Matches: 130, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.11
40 113 0.87
41 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
Found at i:60184832 original size:40 final size:40
Alignment explanation
Indices: 60184756--60184939 Score: 291
Period size: 40 Copynumber: 4.6 Consensus size: 40
60184746 CAAACCCAAG
* * *
60184756 TGCCTTCGGGATTTAG-TCGGATATAG-CAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAA
*
60184795 TGCCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
*
60184835 AGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
*
60184875 TGCCTTCGGGACTTAGCCTGGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
60184915 TGCCTTCGGGACTTAGCCCGGATAT
1 TGCCTTCGGGACTTAGCCCGGATAT
60184940 CATTCGAATA
Statistics
Matches: 134, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 14 0.10
40 117 0.87
41 3 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
Found at i:60186717 original size:20 final size:20
Alignment explanation
Indices: 60186694--60186747 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
60186684 AGTTTTTCCC
*
60186694 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
60186714 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
60186734 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
60186748 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:60186729 original size:30 final size:30
Alignment explanation
Indices: 60186694--60186767 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
60186684 AGTTTTTCCC
60186694 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
60186724 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
60186754 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
60186768 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:60186757 original size:20 final size:20
Alignment explanation
Indices: 60186694--60186758 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
60186684 AGTTTTTCCC
* * * *
60186694 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
60186714 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
60186733 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
60186754 AGCTC
1 AGCTC
60186759 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:60189076 original size:41 final size:41
Alignment explanation
Indices: 60189019--60189161 Score: 207
Period size: 41 Copynumber: 3.5 Consensus size: 41
60189009 AGCTTGGGTT
* *
60189019 CGAAGGGCTTTTGAGCCAGTGCTAATACCCGAACTTAATTA
1 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTA
*
60189060 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTT
1 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTA
* * *
60189101 CGAAGGGCTTTTGAGCCAGTG-TCATAACCGGACTTAGTTC
1 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTA
* *
60189141 CGAAGGGCCTTCGAGCCAGTG
1 CGAAGGGCTTTTGAGCCAGTG
60189162 GCCTAATCCG
Statistics
Matches: 94, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 35 0.37
41 59 0.63
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTA
Found at i:60189139 original size:40 final size:40
Alignment explanation
Indices: 60189017--60189202 Score: 203
Period size: 41 Copynumber: 4.6 Consensus size: 40
60189007 CGAGCTTGGG
* *
60189017 TTCGAAGGGCTTTTGAGCCAGTGCTAATACCCGAACTTAAT
1 TTCGAAGGGCTTTTGAGCCAGTG-TAATAACCGAACTTAGT
*
60189058 TACGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
1 TTCGAAGGGCTTTTGAGCCAGTG-TAATAACCGAACTTAGT
* *
60189099 TTCGAAGGGCTTTTGAGCCAGTGTCATAACCGGACTTAGT
1 TTCGAAGGGCTTTTGAGCCAGTGTAATAACCGAACTTAGT
* * * *** * *
60189139 TCCGAAGGGCCTTCGAGCCAGTGGCCTAATCCGAGCTTGGT
1 TTCGAAGGGCTTTTGAGCCAGTGTAATAA-CCGAACTTAGT
* *
60189180 CTCGAAGGGC-TTTGAGCTAGTGT
1 TTCGAAGGGCTTTTGAGCCAGTGT
60189203 TAAGAATCGT
Statistics
Matches: 125, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
40 49 0.39
41 76 0.61
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TTCGAAGGGCTTTTGAGCCAGTGTAATAACCGAACTTAGT
Found at i:60189185 original size:81 final size:78
Alignment explanation
Indices: 60189003--60189202 Score: 231
Period size: 81 Copynumber: 2.5 Consensus size: 78
60188993 TCGGGGTGTA
*
60189003 AATCCGAGCTTGGGTTCGAAGGGCTTTTGAGCCAGTGCTAATACCCGAACTTAATTACGAAGGGC
1 AATCCGAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTG-TAATAACCGAACTTAATTACGAAGGGC
* *
60189068 TTTTGAGCCAGTGCT
64 CTTCGAGCCAGTGCT
* * * * * *
60189083 AATAACCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGTCATAACCGGACTTAGTTCCGAAGGG
1 AAT--CCGAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTGTAATAACCGAACTTAATTACGAAGGG
60189148 CCTTCGAGCCAGTGGCCT
63 CCTTCGAGCCAGT-G-CT
*
60189166 AATCCGAGCTTGGTCTCGAAGGGC-TTTGAGCTAGTGT
1 AATCCGAGCTTGGT-TCGAAGGGCTTTTGAGCCAGTGT
60189203 TAAGAATCGT
Statistics
Matches: 102, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
80 17 0.17
81 48 0.47
82 32 0.31
83 5 0.05
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (78 bp):
AATCCGAGCTTGGTTCGAAGGGCTTTTGAGCCAGTGTAATAACCGAACTTAATTACGAAGGGCCT
TCGAGCCAGTGCT
Found at i:60189223 original size:81 final size:76
Alignment explanation
Indices: 60189003--60189228 Score: 211
Period size: 81 Copynumber: 2.8 Consensus size: 76
60188993 TCGGGGTGTA
* * *
60189003 AATCCGAGCTTGGGTTCGAAGGGCTTTTGAGCCAGTGCTAATACCCGAACTTAATTACGAAGGGC
1 AATCCGAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTG-TAATAACCG-GCTT-ATTCCGAAGGGC
* *
60189068 TTTTGAGCCAGTGCT
62 CTTCGAGCCAGTGCT
* * *
60189083 AATAACCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGTCATAACCGGACTTAGTTCCGAAGGG
1 AAT--CCGAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTGTAATAACCGG-CTTA-TTCCGAAGGG
60189148 CCTTCGAGCCAGTGGCCT
61 CCTTCGAGCCAGT-G-CT
* * *
60189166 AATCCGAGCTTGGTCTCGAAGGGC-TTTGAGCTAGTGTTAAGAATCGTGCTTGATTCCGAAGGG
1 AATCCGAGCTTGGT-TCGAAGGGCTTTTGAGCCAGTG-TAATAACCG-GCTT-ATTCCGAAGGG
60189229 TGGTTGTGTC
Statistics
Matches: 121, Mismatches: 15, Indels: 19
0.78 0.10 0.12
Matches are distributed among these distances:
80 17 0.14
81 65 0.54
82 34 0.28
83 5 0.04
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (76 bp):
AATCCGAGCTTGGTTCGAAGGGCTTTTGAGCCAGTGTAATAACCGGCTTATTCCGAAGGGCCTTC
GAGCCAGTGCT
Found at i:60196232 original size:41 final size:41
Alignment explanation
Indices: 60196173--60196357 Score: 225
Period size: 41 Copynumber: 4.6 Consensus size: 41
60196163 CAAGCTTGGG
* *
60196173 TTCGAAGGGCTTTTGAGCCAGTGCTAAGAACCGAACTTAAT
1 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
* **
60196214 TACGAAGGGCTTTTGAGCCAGTGCTAATAACTAAACTTAGT
1 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
*
60196255 TTCGAAGGGCTTTTGAGCCAGTG-TCATAACCGAACTTAGT
1 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
* * * *
60196295 TTCGAAGGGCCTTCGAGCCAGTGGCCTAAT--CCGAGCTTGGT
1 TTCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGT
*
60196336 CTCGAAGGGC-TTTGAGCCAGTG
1 TTCGAAGGGCTTTTGAGCCAGTG
60196358 TTAAGAATCG
Statistics
Matches: 125, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 44 0.35
41 77 0.62
43 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (41 bp):
TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
Found at i:60196341 original size:81 final size:79
Alignment explanation
Indices: 60196163--60196364 Score: 228
Period size: 81 Copynumber: 2.5 Consensus size: 79
60196153 GGTGTAAATT
* *
60196163 CAAGCTTGGGTTCGAAGGGCTTTTGAGCCAGTGCTAAGAACCGAACTTAATTACGAAGGGCTTTT
1 CAAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTG-TAAGAACCGAACTTAATTACGAAGGGCCTTC
60196228 GAGCCAGTGCTAATAAC
64 GAGCCAGTGCTAAT-AC
* * * * * * *
60196245 TAAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGTCATAACCGAACTTAGTTTCGAAGGGCCTTCG
1 CAAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTGTAAGAACCGAACTTAATTACGAAGGGCCTTCG
60196310 AGCCAGTGGCCTAAT-C
65 AGCCAGT-G-CTAATAC
*
60196326 CGAGCTTGGTCTCGAAGGGC-TTTGAGCCAGTGTTAAGAA
1 CAAGCTTGGT-TCGAAGGGCTTTTGAGCCAGTG-TAAGAA
60196365 TCGTGCTTGA
Statistics
Matches: 100, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
80 14 0.14
81 51 0.51
82 30 0.30
83 5 0.05
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CAAGCTTGGTTCGAAGGGCTTTTGAGCCAGTGTAAGAACCGAACTTAATTACGAAGGGCCTTCGA
GCCAGTGCTAATAC
Found at i:60200126 original size:46 final size:46
Alignment explanation
Indices: 60199971--60200194 Score: 219
Period size: 46 Copynumber: 4.9 Consensus size: 46
60199961 CACTGCTGTT
* * *
60199971 ATGTGAGCCCGTGTAAGACATGTCTGGGACATGCATCGGCCAT--ATT
1 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGA-G
* * * **
60200017 ATGAAAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTAAG
1 ATGTAAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAG
*
60200065 A--CAAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAG
1 ATGTAA--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAG
* *
60200111 ATGTAAGCCAATGTAAGACATGTCTGGGACATGCATC-GACTACGAG
1 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAG
* *
60200157 ATGT--GCTAGTGTAAGACATGTCTAGGACATGCATCGGC
1 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC
60200195 ACGAATGTGT
Statistics
Matches: 150, Mismatches: 18, Indels: 21
0.79 0.10 0.11
Matches are distributed among these distances:
44 28 0.19
45 4 0.03
46 67 0.45
47 27 0.18
48 23 0.15
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAG
Found at i:60201294 original size:27 final size:26
Alignment explanation
Indices: 60201235--60201414 Score: 168
Period size: 27 Copynumber: 6.7 Consensus size: 26
60201225 TTTAGTTTAC
* *
60201235 TAAAATTATTGAAATACCCCCAG-TTG
1 TAAAATTA-CGAAATACCCTCAGTTTG
* * *
60201261 TAAAATTACCAAAGTACCCTCGGTTTA
1 TAAAATTACGAAA-TACCCTCAGTTTG
* *
60201288 TAAAATTATCGAAATACCGTC-GATTG
1 TAAAATTA-CGAAATACCCTCAGTTTG
*
60201314 TAAAATTACTGAAATACCCT-TGATTTG
1 TAAAATTAC-GAAATACCCTCAG-TTTG
60201341 TAAAATTACCGAAATACCCTCAGTTTG
1 TAAAATTA-CGAAATACCCTCAGTTTG
* *
60201368 CAAAATTACTGAAATACCCTCAATTTG
1 TAAAATTAC-GAAATACCCTCAGTTTG
*
60201395 TAAAATTACTAAAATACCCT
1 TAAAATTAC-GAAATACCCT
60201415 TGTAGGGTAG
Statistics
Matches: 129, Mismatches: 16, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
25 4 0.03
26 37 0.29
27 82 0.64
28 6 0.05
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.31
Consensus pattern (26 bp):
TAAAATTACGAAATACCCTCAGTTTG
Found at i:60201386 original size:54 final size:53
Alignment explanation
Indices: 60201235--60201414 Score: 202
Period size: 53 Copynumber: 3.4 Consensus size: 53
60201225 TTTAGTTTAC
** * * * *
60201235 TAAAATTATTGAAATACCCCCAGTTGTAAAATTAC-CAAAGTACCCTCGGTTTA
1 TAAAATTACCGAAATACCCTCAGTTGTAAAATTACTGAAA-TACCCTCGATTTG
* * *
60201288 TAAAATTATCGAAATACCGTC-GATTGTAAAATTACTGAAATACCCTTGATTTG
1 TAAAATTACCGAAATACCCTCAG-TTGTAAAATTACTGAAATACCCTCGATTTG
* *
60201341 TAAAATTACCGAAATACCCTCAGTTTGCAAAATTACTGAAATACCCTCAATTTG
1 TAAAATTACCGAAATACCCTCAG-TTGTAAAATTACTGAAATACCCTCGATTTG
**
60201395 TAAAATTACTAAAATACCCT
1 TAAAATTACCGAAATACCCT
60201415 TGTAGGGTAG
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
52 1 0.01
53 59 0.54
54 49 0.45
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.31
Consensus pattern (53 bp):
TAAAATTACCGAAATACCCTCAGTTGTAAAATTACTGAAATACCCTCGATTTG
Found at i:60201428 original size:27 final size:27
Alignment explanation
Indices: 60201398--60201646 Score: 293
Period size: 27 Copynumber: 9.2 Consensus size: 27
60201388 CAATTTGTAA
*
60201398 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * * *
60201425 AATTACTAAAATACCAC-TATAGGGAAA
1 AATTACTGAAATACC-CTTGTAGGGTAG
*
60201452 AATTACTGAAATACCTTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
**
60201479 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * * *
60201506 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
60201533 AATTACTAAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
60201560 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
60201587 AATTACTGAAATACCCTTGTGGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
60201614 AATTACTGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCTTGTAGGGTAG
60201641 AATTAC
1 AATTAC
60201647 CATTTTGCCC
Statistics
Matches: 192, Mismatches: 28, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
27 191 0.99
28 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:60201429 original size:54 final size:53
Alignment explanation
Indices: 60201317--60201646 Score: 238
Period size: 54 Copynumber: 6.1 Consensus size: 53
60201307 TCGATTGTAA
* * ** * ** * *
60201317 AATTACTGAAATACCCTTGATTTGTAAAATTACCGAAATACCCTCAGT-TTGCAA
1 AATTACTAAAATACCC-TAATGGGTAAAATTACCGAAATACCCT-TGTAGGGTAG
* ** **
60201371 AATTACTGAAATACCCTCAATTTGTAAAATTACTAAAATACCCTTGTAGGGTAG
1 AATTACTAAAATACCCT-AATGGGTAAAATTACCGAAATACCCTTGTAGGGTAG
* * *
60201425 AATTACTAAAATACCACT-ATAGGGAAAAATTACTGAAATACCTTTGTAGGGTAG
1 AATTACTAAAATACC-CTAAT-GGGTAAAATTACCGAAATACCCTTGTAGGGTAG
* ** * *
60201479 AATTACCAAAATACCCTTGTAGGGTAGAAA-TACCGAAATACCCCTATAGGGTAG
1 AATTACTAAAATACCCTAAT-GGGTA-AAATTACCGAAATACCCTTGTAGGGTAG
* *
60201533 AATTACTAAAATACCCCTGTAA--GGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTAAAATA-CCC--TAATGGGTAAAATTACCGAAATACCCTTGTAGGGTAG
* ** * * * * *
60201587 AATTACTGAAATACCCTTGTGGGGTAGAATTACTGAGATACCCTTGTGGGGTAA
1 AATTACTAAAATACCCTAAT-GGGTAAAATTACCGAAATACCCTTGTAGGGTAG
60201641 AATTAC
1 AATTAC
60201647 CATTTTGCCC
Statistics
Matches: 229, Mismatches: 34, Indels: 26
0.79 0.12 0.09
Matches are distributed among these distances:
51 1 0.00
53 12 0.05
54 207 0.90
55 8 0.03
57 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.28
Consensus pattern (53 bp):
AATTACTAAAATACCCTAATGGGTAAAATTACCGAAATACCCTTGTAGGGTAG
Found at i:60201430 original size:81 final size:81
Alignment explanation
Indices: 60201264--60201521 Score: 217
Period size: 81 Copynumber: 3.2 Consensus size: 81
60201254 CCAGTTGTAA
* * * *
60201264 AATTACC-AAAGTACCCTCGGTTT-ATAAAATTA-TCGAAATACCGTCGA-TTGTAAAATTACTG
1 AATTACCGAAA-TACCCTCAGTTTGA-AAAATTACT-GAAATACCCTCAATTTGTAAAATTACTA
** *
60201325 AAATACCCTTG-ATTTGTAA
63 AAATACCCTTGTA-GGGTAG
*
60201344 AATTACCGAAATACCCTCAGTTTGCAAAATTACTGAAATACCCTCAATTTGTAAAATTACTAAAA
1 AATTACCGAAATACCCTCAGTTTGAAAAATTACTGAAATACCCTCAATTTGTAAAATTACTAAAA
60201409 TACCCTTGTAGGGTAG
66 TACCCTTGTAGGGTAG
** ** *** ** * *
60201425 AATTACTAAAATACCACT-A-TAGGGAAAAATTACTGAAATA-CCTTTGTAGGGTAGAATTACCA
1 AATTACCGAAATACC-CTCAGT-TTGAAAAATTACTGAAATACCCTCAAT-TTGTAAAATTACTA
60201487 AAATACCCTTGTAGGGTAG
63 AAATACCCTTGTAGGGTAG
*
60201506 AAATACCGAAATACCC
1 AATTACCGAAATACCC
60201522 CTATAGGGTA
Statistics
Matches: 147, Mismatches: 23, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
80 42 0.29
81 102 0.69
82 3 0.02
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.29
Consensus pattern (81 bp):
AATTACCGAAATACCCTCAGTTTGAAAAATTACTGAAATACCCTCAATTTGTAAAATTACTAAAA
TACCCTTGTAGGGTAG
Found at i:60201526 original size:81 final size:81
Alignment explanation
Indices: 60201398--60201648 Score: 331
Period size: 81 Copynumber: 3.1 Consensus size: 81
60201388 CAATTTGTAA
* * * * *
60201398 AATTACTAAAATACCCTTGTAGGGTAGAATTACTAAAATACCACTATAGGGAAAAATTACTGAAA
1 AATTACCAAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACTGAAA
*
60201463 TACCTTTGTAGGGTAG
66 TACCCTTGTAGGGTAG
* * *
60201479 AATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATTACTAAAA
1 AATTACCAAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACTGAAA
* *
60201544 TACCCCTGTAAGGTAG
66 TACCCTTGTAGGGTAG
* * * * * *
60201560 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTGGGGTAGAATTACTGAGA
1 AATTACCAAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACTGAAA
* *
60201625 TACCCTTGTGGGGTAA
66 TACCCTTGTAGGGTAG
60201641 AATTACCA
1 AATTACCA
60201649 TTTTGCCCCT
Statistics
Matches: 145, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 145 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.26
Consensus pattern (81 bp):
AATTACCAAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACTGAAA
TACCCTTGTAGGGTAG
Found at i:60201917 original size:27 final size:26
Alignment explanation
Indices: 60201875--60201953 Score: 77
Period size: 27 Copynumber: 3.0 Consensus size: 26
60201865 GGAAGCGTTC
60201875 TGGTGGCTATGCCACAAATATCTGTTT
1 TGGTGGCTATGCCAC-AATATCTGTTT
* * *
60201902 TGGTGGCTCTGGCACAATATCTGTATC
1 TGGTGGCTATGCCACAATATCTGT-TT
* * * *
60201929 TGGTGACTTTGTCACAACATCTGTT
1 TGGTGGCTATGCCACAATATCTGTT
60201954 GACCGATCAA
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
26 10 0.23
27 34 0.77
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (26 bp):
TGGTGGCTATGCCACAATATCTGTTT
Found at i:60202122 original size:20 final size:20
Alignment explanation
Indices: 60202082--60202122 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
60202072 TGTGCACCAT
* *
60202082 TATTGTGGGCTTCGTATCGA
1 TATTGTAGGCTTCGTACCGA
*
60202102 TATTGTAGGCTTCGTGCCGA
1 TATTGTAGGCTTCGTACCGA
60202122 T
1 T
60202123 TATAGACCCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.17, G:0.29, T:0.39
Consensus pattern (20 bp):
TATTGTAGGCTTCGTACCGA
Found at i:60202173 original size:98 final size:98
Alignment explanation
Indices: 60202004--60202242 Score: 345
Period size: 98 Copynumber: 2.4 Consensus size: 98
60201994 TGTGTGCCGT
* *
60202004 TATTGTAGGCTTGGTGCCGATTATAGACCCTTTATCAATGGCTGAGTGCCGATAGTGTTACCGAA
1 TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTGCCGATAGTGTTACCGAA
*
60202069 GGCTGTGCACCATTATTGTGGGCTTCGTATCGA
66 GGCTGTGCACCATTATTGTAGGCTTCGTATCGA
* *
60202102 TATTGTAGGCTTCGTGCCGATTATAGACCCGTTAGCAATGGCTGAGTGGCGATCA-TGTTACCGA
1 TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTGCCGAT-AGTGTTACCGA
* ** *
60202166 AGTCTGTGTGCCGTTATTGTAGGCTTCGTATCGA
65 AGGCTGTGCACCATTATTGTAGGCTTCGTATCGA
* * * *
60202200 TATTGTGGGCTTCATGCCGATTATAGACCTGTTATCGATGGCT
1 TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCT
60202243 TTGTGCCACG
Statistics
Matches: 126, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
98 125 0.99
99 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.33
Consensus pattern (98 bp):
TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTGCCGATAGTGTTACCGAA
GGCTGTGCACCATTATTGTAGGCTTCGTATCGA
Found at i:60205582 original size:27 final size:27
Alignment explanation
Indices: 60205551--60205670 Score: 134
Period size: 27 Copynumber: 4.4 Consensus size: 27
60205541 GTAGGGCAAA
*
60205551 TCAGTCATTTTACCTTACAGGGGTATT
1 TCAGTCATTTTACCCTACAGGGGTATT
* * *
60205578 ACAGTCATTTTACCTTACAGGGATATT
1 TCAGTCATTTTACCCTACAGGGGTATT
* * *
60205605 TCGGTCATTCTACCCTACGGGGGTATT
1 TCAGTCATTTTACCCTACAGGGGTATT
* * *
60205632 TTAGTCATCTTACCCTA-TGAGGGTATT
1 TCAGTCATTTTACCCTACAG-GGGTATT
60205659 TCAGTCATTTTA
1 TCAGTCATTTTA
60205671 TCACATAAGA
Statistics
Matches: 77, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
26 1 0.01
27 76 0.99
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (27 bp):
TCAGTCATTTTACCCTACAGGGGTATT
Found at i:60205692 original size:27 final size:27
Alignment explanation
Indices: 60205662--60205789 Score: 202
Period size: 27 Copynumber: 4.7 Consensus size: 27
60205652 GGGTATTTCA
*
60205662 GTCATTTTATCACATAAGAGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
60205689 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
** *
60205716 GTCATTTTATCACATGCGGGAAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
60205743 TTCATTTTATCACATAAGGGCAATATC
1 GTCATTTTATCACATAAGGGCAAAATC
60205770 GTCATTTTATCACATAAGGG
1 GTCATTTTATCACATAAGGG
60205790 TTCAGGTACG
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 91 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATC
Found at i:60211238 original size:37 final size:36
Alignment explanation
Indices: 60211174--60211244 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 36
60211164 ATTCCAAAAA
60211174 TAATATTATTTTAATAGATTTAATATTAAATTAAATC
1 TAATATTATTTTAATAGATTT-ATATTAAATTAAATC
* *
60211211 TAATAGTTATTTTAGTAGTATTT-TATTAATTTAA
1 TAATA-TTATTTTAATAG-ATTTATATTAAATTAA
60211245 TATGAAAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
37 15 0.50
38 11 0.37
39 4 0.13
ACGTcount: A:0.41, C:0.01, G:0.06, T:0.52
Consensus pattern (36 bp):
TAATATTATTTTAATAGATTTATATTAAATTAAATC
Found at i:60211258 original size:20 final size:19
Alignment explanation
Indices: 60211235--60211303 Score: 54
Period size: 20 Copynumber: 3.6 Consensus size: 19
60211225 GTAGTATTTT
*
60211235 ATTAATTTAATATGAAAGTG
1 ATTAATTTAATAT-AAAATG
*
60211255 ATT-ATCTTAATATTAAAT-
1 ATTAAT-TTAATATAAAATG
*
60211273 -CTAATTTAATATAAAATTG
1 ATTAATTTAATATAAAA-TG
60211292 ATTAAGTTTAAT
1 ATTAA-TTTAAT
60211304 CATAGTTGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 11
0.70 0.09 0.20
Matches are distributed among these distances:
17 11 0.29
18 3 0.08
19 5 0.13
20 13 0.34
21 6 0.16
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (19 bp):
ATTAATTTAATATAAAATG
Found at i:60225040 original size:24 final size:24
Alignment explanation
Indices: 60225013--60225110 Score: 151
Period size: 24 Copynumber: 4.0 Consensus size: 24
60225003 AAGGCTGTCA
60225013 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
60225037 GGAGAGGATTTTGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
60225061 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
60225085 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
60225110 G
1 G
60225111 AGCAAGAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
24 64 0.96
25 3 0.04
ACGTcount: A:0.35, C:0.05, G:0.39, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:60225894 original size:27 final size:27
Alignment explanation
Indices: 60225853--60225963 Score: 143
Period size: 27 Copynumber: 4.1 Consensus size: 27
60225843 AGGAAGCGTC
* * *
60225853 CTGGTGGCTATGCCACATTTCTCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
60225880 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
60225907 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
60225934 CTGGTGACTCTGTCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
60225960 CTGG
1 CTGG
60225964 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 13 0.18
27 61 0.82
ACGTcount: A:0.15, C:0.25, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:60227144 original size:22 final size:23
Alignment explanation
Indices: 60227119--60227162 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
60227109 AATGATACGA
60227119 AAACCATAG-TAAAATTTGATTG
1 AAACCATAGATAAAATTTGATTG
** *
60227141 AAACTGTAGATAAACTTTGATT
1 AAACCATAGATAAAATTTGATT
60227163 CTGCGAAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (23 bp):
AAACCATAGATAAAATTTGATTG
Found at i:60231434 original size:93 final size:93
Alignment explanation
Indices: 60231327--60231498 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
60231317 GCCGATAAGT
* * * *
60231327 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTAAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60231392 CGAGTTCGGATGCTTAGTTACATTTCAC
66 CGAGTTCGGATGCTTAGTTACATTTCAC
*
60231420 GAACTCGGACTCAACTAAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTAAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60231485 CGAGTTCGGATGCT
66 CGAGTTCGGATGCT
60231499 CAACCATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTAAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCTTAGTTACATTTCAC
Found at i:60231494 original size:46 final size:45
Alignment explanation
Indices: 60231321--60231494 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 45
60231311 TAACCCGCCG
* *
60231321 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAC-TTCGCATCC
* * *
60231367 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTTAG-TTAC
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CTTCGCATCC
* * * *
60231413 ATTTCA-CGAACTCGGACTCAACTAAACAAGTTCGGACATTCGCATCC
1 A--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAC-TTCGCATCC
60231460 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
60231495 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
45 3 0.03
46 66 0.63
47 33 0.31
48 3 0.03
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.22
Consensus pattern (45 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACTTCGCATCC
Found at i:60239012 original size:93 final size:93
Alignment explanation
Indices: 60238887--60239057 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
60238877 GCCCATAAGT
* * *
60238887 GAACTCGGACTAAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTAAACTCAACAAACTCGAGCATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
60238952 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
60238980 GAACTCGGACTCAACTCAACAAATTCGGGCATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTAAACTCAACAAACTCGAGCATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
60239045 CGAGTTCGGATGC
66 CGAGTTCGGATGC
60239058 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTAAACTCAACAAACTCGAGCATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:60239053 original size:46 final size:46
Alignment explanation
Indices: 60238879--60239053 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
60238869 TGTAACCCGC
* * *
60238879 CCATAAGTGAACTCGGACTAAACTCAACGAGCTCGAGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
*
60238925 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCAT
* * * * *
60238975 --TTCA-CGAACTCGGACTCAACTCAACAAATTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
*
60239018 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
60239054 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 3 0.03
46 58 0.56
47 26 0.25
48 3 0.03
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
Found at i:60239514 original size:30 final size:30
Alignment explanation
Indices: 60239480--60239539 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
60239470 ATTTAATACG
60239480 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** **
60239510 AACTTTTGCATCATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
60239540 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:60241445 original size:30 final size:30
Alignment explanation
Indices: 60241411--60241468 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
60241401 CCCGAGCCTA
60241411 GGGCAAAAGTGTAAATATGCAAAAGTTTAG
1 GGGCAAAAGTGTAAATATGCAAAAGTTTAG
* * *
60241441 GGGCAAAATTGTAATTTTGCAAAAGTTT
1 GGGCAAAAGTGTAAATATGCAAAAGTTT
60241469 GAGTTAAGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (30 bp):
GGGCAAAAGTGTAAATATGCAAAAGTTTAG
Found at i:60242284 original size:64 final size:63
Alignment explanation
Indices: 60242203--60242386 Score: 201
Period size: 67 Copynumber: 2.9 Consensus size: 63
60242193 AGACATTGTG
* *
60242203 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * *
60242266 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 -ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
60242331 TA
62 TA
* * * *
60242333 ATTTGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
60242387 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 23 0.23
67 31 0.31
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:60246182 original size:24 final size:24
Alignment explanation
Indices: 60246155--60246228 Score: 130
Period size: 24 Copynumber: 3.0 Consensus size: 24
60246145 AAGGCTGTCA
60246155 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
60246179 GGAGAAGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
60246203 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
60246228 G
1 G
60246229 AGCAAGAGTT
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
24 44 0.94
25 3 0.06
ACGTcount: A:0.38, C:0.05, G:0.36, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:60246194 original size:12 final size:12
Alignment explanation
Indices: 60246154--60246218 Score: 51
Period size: 12 Copynumber: 5.4 Consensus size: 12
60246144 AAAGGCTGTC
60246154 AGGAGAAGATTT
1 AGGAGAAGATTT
** *
60246166 AGGAGCTGA-TA
1 AGGAGAAGATTT
60246177 AGGGAGAAGATTT
1 A-GGAGAAGATTT
** **
60246190 AGGAGCTGATAA
1 AGGAGAAGATTT
60246202 AGGAGAAGATTT
1 AGGAGAAGATTT
60246214 AGGAG
1 AGGAG
60246219 CTGATCAAGG
Statistics
Matches: 37, Mismatches: 14, Indels: 4
0.67 0.25 0.07
Matches are distributed among these distances:
11 2 0.05
12 33 0.89
13 2 0.05
ACGTcount: A:0.40, C:0.03, G:0.37, T:0.20
Consensus pattern (12 bp):
AGGAGAAGATTT
Found at i:60247655 original size:27 final size:27
Alignment explanation
Indices: 60247615--60247717 Score: 129
Period size: 27 Copynumber: 3.9 Consensus size: 27
60247605 AGGAAGCGTC
* *
60247615 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
60247642 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
60247669 CTGGTGGCTCTACCACAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
60247696 C-GGTGACTCTGTCACA-TTATCT
1 CTGGTGGCTCTGCCACATTTATCT
60247718 ATTTTGGCAG
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
25 6 0.09
26 12 0.18
27 49 0.73
ACGTcount: A:0.17, C:0.25, G:0.20, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:60251916 original size:79 final size:81
Alignment explanation
Indices: 60251800--60251982 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
60251790 TACTCGTTCA
* * *
60251800 AATGCCTTCGGGACATAGCTCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
60251863 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
60251880 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
60251943 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
60251959 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
60251983 CATCATTTGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:60251982 original size:40 final size:40
Alignment explanation
Indices: 60251798--60251982 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
60251788 ACTACTCGTT
* * *
60251798 CAAATGCCTTCGGGACATAGCTCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
60251838 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
60251878 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
60251917 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
60251958 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60251983 CATCATTTGA
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 79 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:60254911 original size:43 final size:43
Alignment explanation
Indices: 60254856--60255020 Score: 142
Period size: 43 Copynumber: 3.9 Consensus size: 43
60254846 TATTGATATG
*
60254856 TGATTACATGTAAGACCATGTCTAGGACATTGGCATTA-T-AT
1 TGATTTCATGTAAGACCATGTCTAGGACATTGGCATTATTAAT
*
60254897 TGAGATTAT-GTGTAAGACCATGTC-AGGGACATTGGCATTATTAAT
1 T--GATT-TCATGTAAGACCATGTCTA-GGACATTGGCATTATTAAT
* * * * * *
60254942 TGATTTCATGTAAGACCCTGTCTAGGACAGTGGTATCAATAAG
1 TGATTTCATGTAAGACCATGTCTAGGACATTGGCATTATTAAT
** * * *
60254985 TGATAGCATGTAAGACCATATCTGGGATA-TGGCATT
1 TGATTTCATGTAAGACCATGTCTAGGACATTGGCATT
60255021 GTACAAGCTA
Statistics
Matches: 99, Mismatches: 17, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 86 0.87
44 2 0.02
45 3 0.03
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (43 bp):
TGATTTCATGTAAGACCATGTCTAGGACATTGGCATTATTAAT
Found at i:60258381 original size:41 final size:43
Alignment explanation
Indices: 60258313--60258418 Score: 126
Period size: 41 Copynumber: 2.5 Consensus size: 43
60258303 TGGCATTGGT
* * * * * *
60258313 ATATGTGATTACGTGTAAAATCATGTCTGGGACATTTGCATC-
1 ATATGTGATTACATGTAAGACCCTGTCTGGGACAGTGGCATCA
* *
60258355 GTATTTGATT-CATGTAAGACCCTGTCTGGGACAGTGGCATCA
1 ATATGTGATTACATGTAAGACCCTGTCTGGGACAGTGGCATCA
60258397 ATATGTGATTACATGTAAGACC
1 ATATGTGATTACATGTAAGACC
60258419 ACGTCTACGA
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
41 25 0.48
42 16 0.31
43 11 0.21
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (43 bp):
ATATGTGATTACATGTAAGACCCTGTCTGGGACAGTGGCATCA
Found at i:60261045 original size:18 final size:18
Alignment explanation
Indices: 60261015--60261050 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
60261005 AGTTAAGTCC
60261015 GAGATTCATCGAGCTGTAT
1 GAGATTCATCGAGC-GTAT
60261034 GAGATT-ATCGAGCGTAT
1 GAGATTCATCGAGCGTAT
60261051 TGGGCCGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 7 0.41
19 6 0.35
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (18 bp):
GAGATTCATCGAGCGTAT
Found at i:60262291 original size:20 final size:21
Alignment explanation
Indices: 60262241--60262291 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
60262231 ACCCATCCCC
*
60262241 ATGCAATATGTCATACATCGT
1 ATGCAATATATCATACATCGT
60262262 AT-C-ATAATATCATACAT-GT
1 ATGCAAT-ATATCATACATCGT
60262281 ATGCAATATAT
1 ATGCAATATAT
60262292 ATAATATGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
19 6 0.23
20 16 0.62
21 4 0.15
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (21 bp):
ATGCAATATATCATACATCGT
Found at i:60272553 original size:25 final size:27
Alignment explanation
Indices: 60272518--60272578 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
60272508 TAGATAATGA
60272518 AAAAATAATGA-ATAAATG-AAATTTGT
1 AAAAATAATGATA-AAATGAAAATTTGT
60272544 AAAAA-AATGATAAAATGAAAATTTGATT
1 AAAAATAATGATAAAATGAAAATTTG--T
60272572 AAAAATA
1 AAAAATA
60272579 TTCAAGTGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
25 10 0.33
26 13 0.43
28 6 0.20
29 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (27 bp):
AAAAATAATGATAAAATGAAAATTTGT
Found at i:60279328 original size:15 final size:15
Alignment explanation
Indices: 60279308--60279340 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
60279298 CTATTAAATT
60279308 ACACAATGTAAGTTA
1 ACACAATGTAAGTTA
60279323 ACACAATGTAAGTTA
1 ACACAATGTAAGTTA
60279338 ACA
1 ACA
60279341 TGATATTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.15, G:0.12, T:0.24
Consensus pattern (15 bp):
ACACAATGTAAGTTA
Found at i:60279808 original size:43 final size:43
Alignment explanation
Indices: 60279747--60279832 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
60279737 GTCACAGGCA
* *
60279747 TCGCATTCACAATGAACTCAAACCACTCAACGAGCTGGAATGC
1 TCGCATCCACAATGAACTCAAACCACTCAACGAGCTCGAATGC
* **
60279790 TCGCATCCATAATGAACTCGGACCACTCAACGAGCTCGAATGC
1 TCGCATCCACAATGAACTCAAACCACTCAACGAGCTCGAATGC
60279833 CACATATCTC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.33, C:0.31, G:0.17, T:0.19
Consensus pattern (43 bp):
TCGCATCCACAATGAACTCAAACCACTCAACGAGCTCGAATGC
Found at i:60283359 original size:29 final size:29
Alignment explanation
Indices: 60283291--60283421 Score: 95
Period size: 29 Copynumber: 4.6 Consensus size: 29
60283281 AACCCCTACA
* * * *
60283291 TACATGCATATGTCCCA-CTAGGCCTAATC
1 TACATTCATATGGCCCATC-AGGCCCAATT
*
60283320 T-CATTTATATGGCCCATCAGGCCCAATT
1 TACATTCATATGGCCCATCAGGCCCAATT
* *
60283348 TACATTCATATGGCCCACCAGACCCAATT
1 TACATTCATATGGCCCATCAGGCCCAATT
* * * * * *
60283377 CATATTCATTTGTCCCATTAGGCCCAAAT
1 TACATTCATATGGCCCATCAGGCCCAATT
* * *
60283406 CACCTTTATATGGCCC
1 TACATTCATATGGCCC
60283422 GTTATGCCCA
Statistics
Matches: 79, Mismatches: 21, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
28 21 0.27
29 58 0.73
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.30
Consensus pattern (29 bp):
TACATTCATATGGCCCATCAGGCCCAATT
Found at i:60293385 original size:43 final size:43
Alignment explanation
Indices: 60293324--60293405 Score: 155
Period size: 43 Copynumber: 1.9 Consensus size: 43
60293314 CAGGCATCGT
*
60293324 ATCCATAATGAACTCGGACCAGTCAACGAGCTCGGATGCTCTC
1 ATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGCTCTC
60293367 ATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGC
1 ATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGC
60293406 CACATATCTC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (43 bp):
ATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGCTCTC
Found at i:60294615 original size:59 final size:59
Alignment explanation
Indices: 60294523--60294640 Score: 209
Period size: 59 Copynumber: 2.0 Consensus size: 59
60294513 GCACGATCAC
* *
60294523 GCAAAAAGAGACGAGTCCAAGAAACCTAAAATAGGTGACAAGGAAACACCGAGTGAGTA
1 GCAAAAAGAGACGAGTCCAAGAAACCTAAAATAGGTGACAAGCAAACACCGAATGAGTA
*
60294582 GCAAAAAGAGACGAGTCCAAGAAACCTAGAATAGGTGACAAGCAAACACCGAATGAGTA
1 GCAAAAAGAGACGAGTCCAAGAAACCTAAAATAGGTGACAAGCAAACACCGAATGAGTA
60294641 TATAACTCAG
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.47, C:0.18, G:0.25, T:0.10
Consensus pattern (59 bp):
GCAAAAAGAGACGAGTCCAAGAAACCTAAAATAGGTGACAAGCAAACACCGAATGAGTA
Found at i:60295142 original size:29 final size:29
Alignment explanation
Indices: 60295079--60295146 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
60295069 TAATCAACCG
60295079 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
60295108 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
60295137 CGCACACTTA
1 CGCACACTTA
60295147 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:60295259 original size:174 final size:174
Alignment explanation
Indices: 60294968--60295295 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
60294958 AACTCAAGGT
* *
60294968 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
60295033 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
60295098 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
60295142 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
60295207 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
60295272 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
60295296 TGTACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:60295287 original size:29 final size:30
Alignment explanation
Indices: 60295248--60295326 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
60295238 CTTAATAATC
60295248 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
60295278 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
60295307 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
60295327 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:60300447 original size:27 final size:26
Alignment explanation
Indices: 60300417--60300493 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 26
60300407 GTCAACTGAT
*
60300417 ACAGATAATCGTGGCAGTGCCACAAGA
1 ACAGATAAT-GTGGCAGAGCCACAAGA
* *
60300444 ACAGATATATGTGACAGAGCCACGAGA
1 ACAGATA-ATGTGGCAGAGCCACAAGA
* * *
60300471 TCAAATAATTGTGGCATAGCCAC
1 ACAGATAA-TGTGGCAGAGCCAC
60300494 CAGGCTGCTT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
26 1 0.02
27 38 0.93
28 2 0.05
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (26 bp):
ACAGATAATGTGGCAGAGCCACAAGA
Found at i:60300664 original size:28 final size:26
Alignment explanation
Indices: 60300602--60300664 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
60300592 AAAGTACCCC
** * *
60300602 TAGGGGTATAATGGTAATTTTGCACC
1 TAGGGGTATAACAGTAATTTTCCACA
60300628 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTTCC--ACA
60300656 TAGGGGTAT
1 TAGGGGTAT
60300665 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 20 0.65
28 11 0.35
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.33
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTCCACA
Found at i:60301687 original size:16 final size:16
Alignment explanation
Indices: 60301662--60301694 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
60301652 CTAAAAGAAA
60301662 AAGAAAAGATGAGCAG
1 AAGAAAAGATGAGCAG
*
60301678 AAGAAGAGATGAGCAG
1 AAGAAAAGATGAGCAG
60301694 A
1 A
60301695 GAATTTGGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.06, G:0.33, T:0.06
Consensus pattern (16 bp):
AAGAAAAGATGAGCAG
Found at i:60308279 original size:27 final size:26
Alignment explanation
Indices: 60308244--60308352 Score: 103
Period size: 27 Copynumber: 4.0 Consensus size: 26
60308234 AGCATGGCTG
* *
60308244 CCAGAACAGATAATATGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
* *
60308270 CCAGATACAGATAATCGTGGCAGTGCCA
1 CCAGA-ACAGATAAT-GTGACAGAGCCA
*
60308298 CAAGAACAGATATATGTGACAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* *
60308325 CCA-AATCAGATAATTGTGGCATAGCCA
1 CCAGAA-CAGATAA-TGTGACAGAGCCA
60308352 C
1 C
60308353 TAGGACGCTT
Statistics
Matches: 68, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
26 8 0.12
27 46 0.68
28 14 0.21
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:60310435 original size:53 final size:54
Alignment explanation
Indices: 60310352--60310508 Score: 205
Period size: 53 Copynumber: 2.9 Consensus size: 54
60310342 TTCTTTAAAT
* * *
60310352 TTTCCTATATGATGTCATAACCTACCAGTTACAG-TCTTACACGATATGGTCTTG
1 TTTCC-ATATGATGTCATAACCCACTAGTTACAGATCTTACACGATATGGTCTTC
* *
60310406 TTTCCATATGATGTCATAACCCACTAGTTAC-GATCTTACACAATATGGTATTC
1 TTTCCATATGATGTCATAACCCACTAGTTACAGATCTTACACGATATGGTCTTC
* *
60310459 TTTCCATATGATGTCATAACCCA-TCAGTTA-AGATCTTATATGATATGGTC
1 TTTCCATATGATGTCATAACCCACT-AGTTACAGATCTTACACGATATGGTC
60310509 GTATTTAGTG
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
52 2 0.02
53 84 0.92
54 5 0.05
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (54 bp):
TTTCCATATGATGTCATAACCCACTAGTTACAGATCTTACACGATATGGTCTTC
Found at i:60311545 original size:16 final size:16
Alignment explanation
Indices: 60311524--60311558 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
60311514 TTAAGGTTGG
60311524 AATTGAATAGAGCTGT
1 AATTGAATAGAGCTGT
60311540 AATTGAATAGAGCTGT
1 AATTGAATAGAGCTGT
60311556 AAT
1 AAT
60311559 CAGTAATTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.31
Consensus pattern (16 bp):
AATTGAATAGAGCTGT
Found at i:60311798 original size:58 final size:58
Alignment explanation
Indices: 60311736--60311859 Score: 151
Period size: 58 Copynumber: 2.1 Consensus size: 58
60311726 TTTTAATAAG
* * * *
60311736 ATTATTATTAAAAATAATTTGATAAATATAATAAATATTTTAACCATATT-TTAACATA
1 ATTATTATTAAAAATAATTTAATAAA-ATAATAAATAATTTAACAAAATTCTTAACATA
* * * * *
60311794 ATTATTATTAAATATAATTTAATAAAATGATATATAATTTAATAAAATTCTTAATATA
1 ATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAACAAAATTCTTAACATA
60311852 ATTATTAT
1 ATTATTAT
60311860 ATGAATTAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
57 17 0.30
58 39 0.70
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (58 bp):
ATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAACAAAATTCTTAACATA
Found at i:60316965 original size:24 final size:22
Alignment explanation
Indices: 60316938--60317086 Score: 81
Period size: 22 Copynumber: 6.6 Consensus size: 22
60316928 CATCATACAT
**
60316938 GCTCTTTCGAGTCATGGTCAGTAA
1 GCTCTTTCGAG-C-TGAACAGTAA
*
60316962 GCTCCTTCGAGCTGAACAGTAA
1 GCTCTTTCGAGCTGAACAGTAA
*
60316984 GCTCTATT-GAGCTGAAACGGTAA
1 GCTCT-TTCGAGCTG-AACAGTAA
* * * *
60317007 GCTCTAAT-AAGTTGAATAGTAA
1 GCTCT-TTCGAGCTGAACAGTAA
*
60317029 GCTCTATT-GAGCTGAACAATAA
1 GCTCT-TTCGAGCTGAACAGTAA
** *
60317051 GCTCCAAT-GAGCTGAAATAGTAA
1 GCT-CTTTCGAGCTG-AACAGTAA
*
60317074 GCTCTTACGAGCT
1 GCTCTTTCGAGCT
60317087 ATGGTGAGTC
Statistics
Matches: 98, Mismatches: 22, Indels: 11
0.75 0.17 0.08
Matches are distributed among these distances:
22 52 0.53
23 36 0.37
24 10 0.10
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (22 bp):
GCTCTTTCGAGCTGAACAGTAA
Found at i:60316984 original size:22 final size:21
Alignment explanation
Indices: 60316956--60317078 Score: 104
Period size: 22 Copynumber: 5.5 Consensus size: 21
60316946 GAGTCATGGT
60316956 CAGTAAGCTCCT-TCGAGCTGAA
1 CAGTAAGCT-CTAT-GAGCTGAA
60316978 CAGTAAGCTCTATTGAGCTGAAA
1 CAGTAAGCTCTA-TGAGCTG-AA
* * *
60317001 CGGTAAGCTCTAATAAGTTGAA
1 CAGTAAGCTCT-ATGAGCTGAA
*
60317023 TAGTAAGCTCTATTGAGCTGAA
1 CAGTAAGCTCTA-TGAGCTGAA
* *
60317045 CAATAAGCTCCAATGAGCTGAAA
1 CAGTAAGCT-CTATGAGCTG-AA
*
60317068 TAGTAAGCTCT
1 CAGTAAGCTCT
60317079 TACGAGCTAT
Statistics
Matches: 81, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
21 3 0.04
22 48 0.59
23 29 0.36
24 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (21 bp):
CAGTAAGCTCTATGAGCTGAA
Done.