Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 184 of 297
Found at i:62164604 original size:21 final size:21
Alignment explanation
Indices: 62164580--62164629 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
62164570 CTGCTGTATC
62164580 TATTTGACTATTTGAATGAAA
1 TATTTGACTATTTGAATGAAA
* * * *
62164601 TATTTGACTGTTTGATTGTAT
1 TATTTGACTATTTGAATGAAA
62164622 TATTTGAC
1 TATTTGAC
62164630 AGAAAGACAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.28, C:0.06, G:0.16, T:0.50
Consensus pattern (21 bp):
TATTTGACTATTTGAATGAAA
Found at i:62167052 original size:22 final size:21
Alignment explanation
Indices: 62167022--62167068 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
62167012 TACAAATTAA
62167022 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
62167044 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
62167065 ATCT
1 ATCT
62167069 AAGATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:62167062 original size:16 final size:16
Alignment explanation
Indices: 62167041--62167091 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 16
62167031 ATTACAAGAT
62167041 CATATCTTCAAGATTG
1 CATATCTTCAAGATTG
62167057 CATATCATATCTAAGATTG
1 CATATC-T-TC-AAGATTG
*
62167076 CATATCCTTAAAGATT
1 CATAT-CTTCAAGATT
62167092 ATATTTCCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 13 0.43
20 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (16 bp):
CATATCTTCAAGATTG
Found at i:62167074 original size:19 final size:21
Alignment explanation
Indices: 62167039--62167081 Score: 72
Period size: 19 Copynumber: 2.1 Consensus size: 21
62167029 AGATTACAAG
62167039 ATCATATCTTCAAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
62167060 ATCATATC-T-AAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
62167079 ATC
1 ATC
62167082 CTTAAAGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
20 1 0.05
21 8 0.36
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (21 bp):
ATCATATCTTCAAGATTGCAT
Found at i:62167837 original size:206 final size:206
Alignment explanation
Indices: 62167483--62168414 Score: 1400
Period size: 206 Copynumber: 4.5 Consensus size: 206
62167473 ATCTATTTTT
* *
62167483 TGACAATACAGATATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGCGAAAGCCAAATCA
1 TGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCA
* * * * *
62167548 ACTATGTCTTCGATTT-TCTCCTTGTAAGCACAAAGATACCTAACCATCTTGGATCTGCTTCAGT
66 ACTATGTCTTCGATTTGT-TCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTTCAGT
* * * * * *
62167612 CTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATCGAATATGGAGACGCCAAACTT
130 ATAAACATATGAAGGCTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTT
**
62167677 TGATTTGTTCTC
195 CAATTTGTTCTC
* * *
62167689 TGACAATATAGAAATGCCAAATCATCTTAGATTTGCTTCATCATAAGCACGTGAAAGCCAAATCA
1 TGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCA
* * * * *
62167754 GCTATGTCTTCGATTTGTTCCTTATAAGCACAAGAATTCCAAATCATCTTGGATCTGCTTCAGTA
66 ACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTTCAGTA
* * ** *
62167819 TAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCTTTTGAATATGGAGACGCCAAACTTC
131 TAAACATATGAAGGCTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTTC
* *
62167884 GATCTGTTCTC
196 AATTTGTTCTC
* *
62167895 TAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCTTAAGCACGTGAAAGCCAAATCA
1 TGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCA
*
62167960 ACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAGTCACCTTGGATCTGCTTCAGTA
66 ACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTTCAGTA
* * *
62168025 TAAACATATGAAGGCCAGATCTACTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAATCTTC
131 TAAACATATGAAGGCTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTTC
62168090 AATTTGTTCTC
196 AATTTGTTCTC
* *
62168101 TGACAATACAGAGATACCAAATCATCTTAGATTTGCTTCATCTTAAGCACGTGAAAGCCAAATCA
1 TGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCA
*
62168166 ACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTACTTCAGTA
66 ACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTTCAGTA
* * * * *
62168231 TAAACATATGAAGGCAAGGTCTGTTATGTGTCTGCTCTTCGTCGAATATGGAGACGCCAATCTTC
131 TAAACATATGAAGGCTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTTC
62168296 AATTTGTTCTC
196 AATTTGTTCTC
* * * *
62168307 TGACAATACAGAGATACCAAATCATCTTAGATTTGCTTTAGCGTAAAC-CGTGAAAGCCAAATCA
1 TGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCA
*
62168371 GCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAAT
66 ACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAAT
62168415 ATGCTATCTT
Statistics
Matches: 672, Mismatches: 53, Indels: 3
0.92 0.07 0.00
Matches are distributed among these distances:
205 59 0.09
206 612 0.91
207 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (206 bp):
TGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCA
ACTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCTTCAGTA
TAAACATATGAAGGCTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTTC
AATTTGTTCTC
Found at i:62168454 original size:44 final size:43
Alignment explanation
Indices: 62168385--62168894 Score: 379
Period size: 44 Copynumber: 11.7 Consensus size: 43
62168375 TGTCTTCGAT
* * * * *
62168385 TTGTTCCTTGTAAGCACAAGGATGCCAAATATGCTATCTTCAAC
1 TTGTTCCCTATAAACACAGGGATGCC-AATCTGCTATCTTCAAC
* ** *
62168429 TTATTCCCTATAAACACAGGGATGCC-ATGCTGAAATCTTCGATC
1 TTGTTCCCTATAAACACAGGGATGCCAAT-CTGCTATCTTC-AAC
** * * * * * * * *
62168473 TACTTCACTGTAAGCACAGGAATGTCAGATCTCCTATCTTCGAT
1 TTGTTCCCTATAAACACAGGGATGCCA-ATCTGCTATCTTCAAC
62168517 TTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAAC
1 TTGTTCCCTATAAACACAGGGATGCC-AATCTGCTATCTTCAAC
** **
62168561 TTGTTCCCTATAAACACAGGGATGCC-ATGCTGAAATCTTTGA-
1 TTGTTCCCTATAAACACAGGGATGCCAAT-CTGCTATCTTCAAC
* * * * * * * *
62168603 TCTGCTTCGCTGTAAGCACAGGAATGTCAGACCTGCTATCTTCGAT
1 T-TG-TTCCCTATAAACACAGGGATGCCA-ATCTGCTATCTTCAAC
62168649 TTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAAC
1 TTGTTCCCTATAAACACAGGGATGCC-AATCTGCTATCTTCAAC
* ***
62168693 TTGTTCCCTATAAACAAAGGGATGCC-ATGCTAAAATCTTCAAC
1 TTGTTCCCTATAAACACAGGGATGCCAAT-CTGCTATCTTCAAC
**
62168736 TTGTTCCCTATAAACACAGGGATGCC-ATGCTGAAATCTTCAAC
1 TTGTTCCCTATAAACACAGGGATGCCAAT-CTGCTATCTTCAAC
** *
62168779 TTGTTCCCTATAAACACAGGGATGCC-ATGCTGAAATCTTCGA-
1 TTGTTCCCTATAAACACAGGGATGCCAAT-CTGCTATCTTCAAC
** * * * ** *
62168821 TCTGCTTTGCTGTAAGCACA-GGAGTGTCAGATCTGCTATCTTTTAT
1 T-TG-TTCCCTATAAACACAGGGA-TGCCA-ATCTGCTATCTTCAAC
62168867 TTGTTCCCTATAAACACAGGGATGCCAA
1 TTGTTCCCTATAAACACAGGGATGCCAA
62168895 ATCTTGTTTC
Statistics
Matches: 372, Mismatches: 74, Indels: 41
0.76 0.15 0.08
Matches are distributed among these distances:
42 8 0.02
43 118 0.32
44 203 0.55
45 36 0.10
46 7 0.02
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (43 bp):
TTGTTCCCTATAAACACAGGGATGCCAATCTGCTATCTTCAAC
Found at i:62168489 original size:88 final size:87
Alignment explanation
Indices: 62168377--62168893 Score: 419
Period size: 88 Copynumber: 5.9 Consensus size: 87
62168367 ATCAGCTATG
* * * * *
62168377 TCTTCGAT-TTGTTCCTTGTAAGCACAAGGATGCCAAATATGCTATCTTCAACTTATTCCCTATA
1 TCTTCGATCTTGTTCCCTATAAACACAAGGATGCC-AATCTGCTATCTTCAACTTGTTCCCTATA
62168441 AACACAGGGATGCCATGCTGAAA
65 AACACAGGGATGCCATGCTGAAA
** * * * * * * *
62168464 TCTTCGATCTACTTCACTGTAAGCAC-AGGAATGTCAGATCTCCTATCTTCGATTTGTTCCCTAT
1 TCTTCGATCTTGTTCCCTATAAACACAAGG-ATGCCA-ATCTGCTATCTTCAACTTGTTCCCTAT
**
62168528 AAACACAGGGATGCCAAAT-CTGCTA
64 AAACACAGGGATGCC--ATGCTGAAA
* * ** ** * *
62168553 TCTTC-AACTTGTTCCCTATAAACACAGGGATGCC-ATGCTGAAATCTTTGA-TCTGCTTCGCTG
1 TCTTCGATCTTGTTCCCTATAAACACAAGGATGCCAAT-CTGCTATCTTCAACT-TG-TTCCCTA
* * * **
62168615 TAAGCACAGGAATGTCA-GACCTGCTA
63 TAAACACAGGGATGCCATG--CTGAAA
*
62168641 TCTTCGAT-TTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATA
1 TCTTCGATCTTGTTCCCTATAAACACAAGGATGCC-AATCTGCTATCTTCAACTTGTTCCCTATA
* *
62168705 AACAAAGGGATGCCATGCTAAAA
65 AACACAGGGATGCCATGCTGAAA
* * **
62168728 TCTTC-AACTTGTTCCCTATAAACACAGGGATGCC-ATGCTGAAATCTTCAACTTGTTCCCTATA
1 TCTTCGATCTTGTTCCCTATAAACACAAGGATGCCAAT-CTGCTATCTTCAACTTGTTCCCTATA
62168791 AACACAGGGATGCCATGCTGAAA
65 AACACAGGGATGCCATGCTGAAA
** * * * ** *
62168814 TCTTCGATC-TGCTTTGCTGTAAGCAC-AGGAGTGTCAGATCTGCTATCTTTTATTTGTTCCCTA
1 TCTTCGATCTTG-TTCCCTATAAACACAAGGA-TGCCA-ATCTGCTATCTTCAACTTGTTCCCTA
62168877 TAAACACAGGGATGCCA
63 TAAACACAGGGATGCCA
62168894 AATCTTGTTT
Statistics
Matches: 346, Mismatches: 60, Indels: 47
0.76 0.13 0.10
Matches are distributed among these distances:
85 2 0.01
86 60 0.17
87 72 0.21
88 181 0.52
89 26 0.08
90 5 0.01
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (87 bp):
TCTTCGATCTTGTTCCCTATAAACACAAGGATGCCAATCTGCTATCTTCAACTTGTTCCCTATAA
ACACAGGGATGCCATGCTGAAA
Found at i:62168616 original size:132 final size:132
Alignment explanation
Indices: 62168377--62168732 Score: 595
Period size: 132 Copynumber: 2.7 Consensus size: 132
62168367 ATCAGCTATG
* * * * * *
62168377 TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATATGCTATCTTCAACTTATTCCCTATAA
1 TCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
*
62168442 ACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTCC
66 ACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGACCTCC
62168507 TA
131 TA
62168509 TCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
1 TCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
* * * *
62168574 ACACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCGCTGTAAGCACAGGAATGTCAGACCTGC
66 ACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGACCTCC
62168639 TA
131 TA
62168641 TCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
1 TCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
* *
62168706 ACAAAGGGATGCCATGCTAAAATCTTC
66 ACACAGGGATGCCATGCTGAAATCTTC
62168733 AACTTGTTCC
Statistics
Matches: 210, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 210 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (132 bp):
TCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
ACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGACCTCC
TA
Found at i:62169762 original size:7 final size:7
Alignment explanation
Indices: 62169746--62169812 Score: 53
Period size: 7 Copynumber: 8.7 Consensus size: 7
62169736 GGCCTCTCCA
*
62169746 TTTTTAT
1 TTTTTCT
62169753 TTTTTCTT
1 TTTTTC-T
62169761 TTTTATCT
1 TTTT-TCT
*
62169769 TTTATCT
1 TTTTTCT
*
62169776 TTTTATTT
1 TTTT-TCT
62169784 TTTTCTCTTT
1 TTTT-TC--T
62169794 TTTTTCT
1 TTTTTCT
62169801 TTTTTCT
1 TTTTTCT
62169808 TTTTT
1 TTTTT
62169813 TTTGAAATAG
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
7 24 0.49
8 16 0.33
9 4 0.08
10 5 0.10
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTCT
Found at i:62169769 original size:9 final size:9
Alignment explanation
Indices: 62169752--62169805 Score: 55
Period size: 8 Copynumber: 6.6 Consensus size: 9
62169742 TCCATTTTTA
62169752 TTTTT-TCT
1 TTTTTATCT
62169760 TTTTTATC-
1 TTTTTATCT
62169768 -TTTTATC-
1 TTTTTATCT
62169775 TTTTTAT-T
1 TTTTTATCT
*
62169783 TTTTTCTCT
1 TTTTTATCT
*
62169792 TTTTTTTCT
1 TTTTTATCT
62169801 TTTTT
1 TTTTT
62169806 CTTTTTTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
7 7 0.17
8 17 0.43
9 16 0.40
ACGTcount: A:0.06, C:0.11, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTATCT
Found at i:62169797 original size:11 final size:10
Alignment explanation
Indices: 62169752--62169815 Score: 53
Period size: 10 Copynumber: 6.3 Consensus size: 10
62169742 TCCATTTTTA
62169752 TTTTTTC-TT
1 TTTTTTCTTT
*
62169761 TTTTATCTTT
1 TTTTTTCTTT
*
62169771 TATCTTTT-TAT
1 T-T-TTTTCTTT
62169782 TTTTTTCTCTT
1 TTTTTTCT-TT
62169793 TTTTTTCTTT
1 TTTTTTCTTT
62169803 TTTCTTT-TTT
1 TTT-TTTCTTT
62169813 TTT
1 TTT
62169816 GAAATAGAAG
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
9 10 0.22
10 16 0.36
11 16 0.36
12 3 0.07
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:62169802 original size:32 final size:30
Alignment explanation
Indices: 62169746--62169815 Score: 95
Period size: 32 Copynumber: 2.3 Consensus size: 30
62169736 GGCCTCTCCA
*
62169746 TTTTTATTTTTTCTTTTTTATCTTTTATCT
1 TTTTTTTTTTTTCTTTTTTATCTTTTATCT
* *
62169776 TTTTATTTTTTTCTCTTTTTTTTCTTTTTTCT
1 TTTT-TTTTTTT-TCTTTTTTATCTTTTATCT
62169808 TTTTTTTT
1 TTTTTTTT
62169816 GAAATAGAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
30 4 0.11
31 10 0.29
32 21 0.60
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.84
Consensus pattern (30 bp):
TTTTTTTTTTTTCTTTTTTATCTTTTATCT
Found at i:62169813 original size:16 final size:16
Alignment explanation
Indices: 62169746--62169814 Score: 86
Period size: 16 Copynumber: 4.3 Consensus size: 16
62169736 GGCCTCTCCA
*
62169746 TTTTTATTTTTTCTTT
1 TTTTTCTTTTTTCTTT
* *
62169762 TTTATCTTTTATCTTT
1 TTTTTCTTTTTTCTTT
*
62169778 TTATTT-TTTTCTCTTT
1 TT-TTTCTTTTTTCTTT
62169794 TTTTTCTTTTTTCTTT
1 TTTTTCTTTTTTCTTT
62169810 TTTTT
1 TTTTT
62169815 TGAAATAGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
15 3 0.07
16 40 0.89
17 2 0.04
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTCTTTTTTCTTT
Found at i:62174690 original size:22 final size:21
Alignment explanation
Indices: 62174655--62174698 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
62174645 AAAGGATATC
62174655 TACAAATCAAATCTCCAAGAT
1 TACAAATCAAATCTCCAAGAT
* *
62174676 TACAAGATCATATCTTCAAGAT
1 TACAA-ATCAAATCTCCAAGAT
62174698 T
1 T
62174699 GCATATCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (21 bp):
TACAAATCAAATCTCCAAGAT
Found at i:62174717 original size:19 final size:19
Alignment explanation
Indices: 62174682--62174779 Score: 128
Period size: 19 Copynumber: 5.2 Consensus size: 19
62174672 AGATTACAAG
62174682 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
62174703 ATCATATTTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
62174722 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
* *
62174739 ATTATATCCAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
62174758 ATCATATCTAAGATTACAT
1 ATCATATCTAAGATTGCAT
62174777 ATC
1 ATC
62174780 CTTAAAGATT
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
17 15 0.22
19 45 0.66
20 1 0.01
21 7 0.10
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:62174789 original size:36 final size:36
Alignment explanation
Indices: 62174668--62174772 Score: 120
Period size: 36 Copynumber: 2.8 Consensus size: 36
62174658 AAATCAAATC
* *
62174668 TCCAAGATTACAAGATCATATCTTCAAGATTGCATATCATA
1 TCCAAGATTGC-ATATCATATC-T-AAGATTG--TATCATA
** *
62174709 TTTAAGATTGCATATCATATCTAAGATTGTATTATA
1 TCCAAGATTGCATATCATATCTAAGATTGTATCATA
62174745 TCCAAGATTGCATATCATATCTAAGATT
1 TCCAAGATTGCATATCATATCTAAGATT
62174773 ACATATCCTT
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
36 32 0.56
38 7 0.12
39 1 0.02
40 9 0.16
41 8 0.14
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (36 bp):
TCCAAGATTGCATATCATATCTAAGATTGTATCATA
Found at i:62175170 original size:34 final size:35
Alignment explanation
Indices: 62175104--62175172 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
62175094 ATAGTTTAGA
*
62175104 AATTTCAATTCATTCACATATTATAAACAATCAAG
1 AATTTCAATTCATTCACATACTATAAACAATCAAG
*
62175139 AATTTCAATTCATTCATA-ACCT-TAAACAATCAAG
1 AATTTCAATTCATTCACATA-CTATAAACAATCAAG
62175173 TAAGTAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
34 13 0.42
35 18 0.58
ACGTcount: A:0.45, C:0.19, G:0.03, T:0.33
Consensus pattern (35 bp):
AATTTCAATTCATTCACATACTATAAACAATCAAG
Found at i:62178675 original size:29 final size:28
Alignment explanation
Indices: 62178634--62178700 Score: 107
Period size: 29 Copynumber: 2.4 Consensus size: 28
62178624 TTTTTTAAAG
*
62178634 AATAGTGGTAAAACTGTAAAATTTGGAA
1 AATAGTGGCAAAACTGTAAAATTTGGAA
*
62178662 GATCAGTGGCAAAACTGTAAAATTTGGAA
1 AAT-AGTGGCAAAACTGTAAAATTTGGAA
62178691 AATAGTGGCA
1 AATAGTGGCA
62178701 GGACTATAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
28 9 0.26
29 26 0.74
ACGTcount: A:0.43, C:0.07, G:0.24, T:0.25
Consensus pattern (28 bp):
AATAGTGGCAAAACTGTAAAATTTGGAA
Found at i:62178710 original size:28 final size:29
Alignment explanation
Indices: 62178637--62178713 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 29
62178627 TTTAAAGAAT
* * *
62178637 AGTGGTAAAACTGTAAAATTTGGAAGATC
1 AGTGGCAAAACTATAAAATTTGGAAAATC
*
62178666 AGTGGCAAAACTGTAAAATTTGGAAAAT-
1 AGTGGCAAAACTATAAAATTTGGAAAATC
**
62178694 AGTGGCAGGACTATAAAATT
1 AGTGGCAAAACTATAAAATT
62178714 GTTAAAACGG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 17 0.40
29 26 0.60
ACGTcount: A:0.43, C:0.08, G:0.23, T:0.26
Consensus pattern (29 bp):
AGTGGCAAAACTATAAAATTTGGAAAATC
Found at i:62178967 original size:33 final size:32
Alignment explanation
Indices: 62178913--62178981 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 32
62178903 AAGAAAGATA
62178913 AATTCTATTAGAATTTGAAAAGGAGTAATTTG
1 AATTCTATTAGAATTTGAAAAGGAGTAATTTG
* * * *
62178945 AATTCTAATTAGGATTTTAAAAGGATTAATTTT
1 AATTCT-ATTAGAATTTGAAAAGGAGTAATTTG
62178978 AATT
1 AATT
62178982 TCAAGTTAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 6 0.19
33 26 0.81
ACGTcount: A:0.41, C:0.03, G:0.14, T:0.42
Consensus pattern (32 bp):
AATTCTATTAGAATTTGAAAAGGAGTAATTTG
Found at i:62181158 original size:27 final size:28
Alignment explanation
Indices: 62181128--62181181 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
62181118 GCTTGATGTG
62181128 GTAAAACCACCAAATAA-AAATAATGCA
1 GTAAAACCACCAAATAATAAATAATGCA
** *
62181155 GTAAAACTGCCGAATAATAAATAATGC
1 GTAAAACCACCAAATAATAAATAATGC
62181182 GATATAATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 14 0.61
28 9 0.39
ACGTcount: A:0.54, C:0.17, G:0.11, T:0.19
Consensus pattern (28 bp):
GTAAAACCACCAAATAATAAATAATGCA
Found at i:62188029 original size:49 final size:47
Alignment explanation
Indices: 62187932--62188195 Score: 182
Period size: 49 Copynumber: 5.5 Consensus size: 47
62187922 GATGCCGACA
* * * * * * **
62187932 CCATGTTCCAAACATGGTCTTACACTGGCTCTTACATCTAAGTTGATG
1 CCATGTCCCAGACA-GGTCTTACACTGACTCATACATCGAGGCCGATG
*
62187980 CCATGTCCCAGACAGGTCTTACACTGACTTCCATACATCGAGGCTGATG
1 CCATGTCCCAGACAGGTCTTACACTGAC-T-CATACATCGAGGCCGATG
* * ** * *
62188029 CCATGTCCCAGATAGGTCTTACACT-A-ACACGCCTC-AAGCCGATG
1 CCATGTCCCAGACAGGTCTTACACTGACTCATACATCGAGGCCGATG
* *
62188073 CCATGTCCCAGACAGGTCTTACTCT-AGCTTGCATATC-TTGAGGCCGATG
1 CCATGTCCCAGACAGGTCTTACACTGA-C-T-CATA-CATCGAGGCCGATG
* * * *
62188122 TCGTGTCCTC-GACAGGTCTTACACTGGCTCTTATCTATCG-GTGCCGATG
1 CCATGTCC-CAGACAGGTCTTACACTGACTCATA-C-ATCGAG-GCCGATG
*
62188171 CCATGTCCCAGACAGGTTTTACACT
1 CCATGTCCCAGACAGGTCTTACACT
62188196 AACACACACA
Statistics
Matches: 172, Mismatches: 30, Indels: 27
0.75 0.13 0.12
Matches are distributed among these distances:
44 31 0.18
45 5 0.03
47 18 0.10
48 20 0.12
49 97 0.56
50 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (47 bp):
CCATGTCCCAGACAGGTCTTACACTGACTCATACATCGAGGCCGATG
Found at i:62188116 original size:93 final size:93
Alignment explanation
Indices: 62187976--62188146 Score: 231
Period size: 93 Copynumber: 1.8 Consensus size: 93
62187966 CATCTAAGTT
*
62187976 GATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACATCGAGGCTGATGCCATGTCC-CAG
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACATCGAGGCCGATGCCATGTCCTC-G
*
62188040 ATAGGTCTTACACTAACACGCCTCAAGCC
65 ACAGGTCTTACACTAACACGCCTCAAGCC
* * * * *
62188069 GATGCCATGTCCCAGACAGGTCTTACTCT-AGCTTGCATATC-TTGAGGCCGATGTCGTGTCCTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGA-CTTCCATA-CATCGAGGCCGATGCCATGTCCTC
62188132 GACAGGTCTTACACT
64 GACAGGTCTTACACT
62188147 GGCTCTTATC
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 1 0.01
93 65 0.96
94 2 0.03
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (93 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACATCGAGGCCGATGCCATGTCCTCGA
CAGGTCTTACACTAACACGCCTCAAGCC
Found at i:62196912 original size:16 final size:16
Alignment explanation
Indices: 62196891--62196922 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
62196881 TAATTTTAAA
*
62196891 GGTATCGTAAAATTCT
1 GGTATCGCAAAATTCT
62196907 GGTATCGCAAAATTCT
1 GGTATCGCAAAATTCT
62196923 AGGAAATTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (16 bp):
GGTATCGCAAAATTCT
Found at i:62207265 original size:20 final size:21
Alignment explanation
Indices: 62207210--62207268 Score: 61
Period size: 20 Copynumber: 2.9 Consensus size: 21
62207200 ATTCGACATT
62207210 TGTATATGTATAAG-TATATAA
1 TGTATATG-ATAAGATATATAA
* * *
62207231 TGT-TTTGATATGATAT-TTA
1 TGTATATGATAAGATATATAA
62207250 TGTATATGATAAGATATAT
1 TGTATATGATAAGATATAT
62207269 TTGTAATGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
19 9 0.30
20 17 0.57
21 4 0.13
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.47
Consensus pattern (21 bp):
TGTATATGATAAGATATATAA
Found at i:62207273 original size:20 final size:20
Alignment explanation
Indices: 62207207--62207273 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
62207197 ATGATTCGAC
62207207 ATTTGTATATGTATAAG-TAT
1 ATTTGTATATG-ATAAGATAT
* * *
62207227 ATAATGT-TTTGATATGATAT
1 AT-TTGTATATGATAAGATAT
62207247 -TTATGTATATGATAAGATAT
1 ATT-TGTATATGATAAGATAT
62207267 ATTTGTA
1 ATTTGTA
62207274 ATGTATTTAA
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
19 8 0.22
20 23 0.64
21 5 0.14
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATTTGTATATGATAAGATAT
Found at i:62209772 original size:21 final size:21
Alignment explanation
Indices: 62209746--62209828 Score: 112
Period size: 21 Copynumber: 4.0 Consensus size: 21
62209736 TAGGTGGATA
*
62209746 AACTCTTACAAGCTTCTGTTC
1 AACTCTTACGAGCTTCTGTTC
62209767 AACTCTTACGAGCTTCTGTTC
1 AACTCTTACGAGCTTCTGTTC
*
62209788 AACTCTTACGAGCTTTTGTTC
1 AACTCTTACGAGCTTCTGTTC
** **
62209809 CGCTCTTTTGAGCTTCTGTT
1 AACTCTTACGAGCTTCTGTT
62209829 GATGTGTTTG
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 55 1.00
ACGTcount: A:0.17, C:0.27, G:0.14, T:0.42
Consensus pattern (21 bp):
AACTCTTACGAGCTTCTGTTC
Found at i:62211704 original size:12 final size:12
Alignment explanation
Indices: 62211687--62211719 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
62211677 CTAAGACACA
62211687 TGCCCGTGTCTT
1 TGCCCGTGTCTT
62211699 TGCCCGTGTCTT
1 TGCCCGTGTCTT
62211711 TGCCCGTGT
1 TGCCCGTGT
62211720 TTGAGCATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.33, G:0.27, T:0.39
Consensus pattern (12 bp):
TGCCCGTGTCTT
Found at i:62216042 original size:46 final size:48
Alignment explanation
Indices: 62215781--62216105 Score: 203
Period size: 46 Copynumber: 6.9 Consensus size: 48
62215771 AAGGTGTAAT
* *
62215781 GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCATCCATCAA-
1 GCCGATGCCATGTCCCAGACATTGTCTTACACTAGCTCTCAT-C-TCAAG
* * * * * * * ** *
62215828 GTCGATGCCATGTCCTAGACATGGACTTATACTAACTATCAAAATCGAG
1 GCCGATGCCATGTCCCAGACATTGTCTTACACTAGCTCTC-ATCTCAAG
* * * * *
62215877 GCAGACGCTATGTCCCAGACA-TGATCTTACACTAGCTCTCACATATC-CG
1 GCCGATGCCATGTCCCAGACATTG-TCTTACACTAGCTCT--CATCTCAAG
* * * *
62215926 TCCCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTC--G
1 -GCCGATGCCATGTCCCAGACATTGTCTTACACTAGCTCTCATCTCAAG
* *
62215971 TACCTGATG-CATG-CCCAGACA-TGTCTTACACTAGCT-TACATCTCGAG
1 -GCC-GATGCCATGTCCCAGACATTGTCTTACACTAGCTCT-CATCTCAAG
* *
62216018 GCCGAT-CCATGTCCCAGA-TTTGTCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCCATGTCCCAGACATTGTCTTACACTAGCTCTCATCTCAAG
* * *
62216064 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
1 GCCGATGCCATGTCCCAGACATTGTCTTACACTAGCTCTCAT
62216106 AATGTGGCTG
Statistics
Matches: 215, Mismatches: 42, Indels: 41
0.72 0.14 0.14
Matches are distributed among these distances:
43 10 0.05
44 9 0.04
45 21 0.10
46 44 0.20
47 43 0.20
48 24 0.11
49 31 0.14
50 31 0.14
51 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATTGTCTTACACTAGCTCTCATCTCAAG
Found at i:62216123 original size:47 final size:47
Alignment explanation
Indices: 62215784--62216125 Score: 194
Period size: 47 Copynumber: 7.3 Consensus size: 47
62215774 GTGTAATGCC
*
62215784 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA-GT-C-
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTC-T-CAT-AATGTGCT
* * * * * * * *
62215831 GATGCCATGTCCTAGACATGGACTTATACTAACTATCAAAATCGAGGCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-G-TGCT
* * * * * *
62215880 GACGCTATGTCCCAGACATGATCTTACACTAGCTCTCACATATCCGTCCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA-AT--GTGCT
* * * *
62215930 GATGCCATGTCCCAGACATGGTCTTACACT-G-ACACAT-CTCGTACCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GT-GCT
* * *
62215976 GATG-CATG-CCCAGACAT-GTCTTACACTAGCT-TACAT-CTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAAT-G-TGCT
* *
62216021 GAT-CCATGTCCCAGA-TTTGTCTTACACTAGCTCTCATCTCAA--TGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA--T-AATGTGCT
*
62216067 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGT-GCT
62216115 GATG-CATGTCC
1 GATGCCATGTCC
62216126 ACTAGCACAC
Statistics
Matches: 230, Mismatches: 40, Indels: 50
0.72 0.12 0.16
Matches are distributed among these distances:
43 10 0.04
44 12 0.05
45 27 0.12
46 37 0.16
47 50 0.22
48 30 0.13
49 32 0.14
50 30 0.13
51 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGCT
Found at i:62225959 original size:20 final size:22
Alignment explanation
Indices: 62225921--62225961 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
62225911 TTCAATAAAT
*
62225921 AAAAATAAAATTATTAATATTA
1 AAAAATAAAATTATAAATATTA
62225943 AAAAAT-AAA-TATAAATATT
1 AAAAATAAAATTATAAATATT
62225962 TTTAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 3 0.17
22 6 0.33
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
AAAAATAAAATTATAAATATTA
Found at i:62227169 original size:23 final size:24
Alignment explanation
Indices: 62227135--62227183 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 24
62227125 TAATAAATTT
*
62227135 TACACAAAATGAAAAACGACAAAG
1 TACACAAAATGAAAAACAACAAAG
62227159 TACA-AAAATGAAAAACAACAAAG
1 TACACAAAATGAAAAACAACAAAG
62227182 TA
1 TA
62227184 AATGATGGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.65, C:0.14, G:0.10, T:0.10
Consensus pattern (24 bp):
TACACAAAATGAAAAACAACAAAG
Found at i:62235707 original size:39 final size:39
Alignment explanation
Indices: 62235653--62235732 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
62235643 TTTACAAATT
*
62235653 TTGGTAGACTTGTAGATATTTTGCCAAAATAGCAGATTC
1 TTGGTAGACTTGTAGACATTTTGCCAAAATAGCAGATTC
62235692 TTGGTAGACTTGTAGACATTTTGCCAAAATAGCAGATTC
1 TTGGTAGACTTGTAGACATTTTGCCAAAATAGCAGATTC
62235731 TT
1 TT
62235733 ACCCTGATTC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (39 bp):
TTGGTAGACTTGTAGACATTTTGCCAAAATAGCAGATTC
Found at i:62265643 original size:28 final size:30
Alignment explanation
Indices: 62265591--62265651 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
62265581 ATTTATTTTG
* *
62265591 CAATTTAACCCCTCAATTTACATTTTT-CT
1 CAATTTAAACCCTCAATATACATTTTTACT
*
62265620 CAATTTAAACCCT-AATATGCATTTTTACT
1 CAATTTAAACCCTCAATATACATTTTTACT
62265649 CAA
1 CAA
62265652 AATCACTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 11 0.39
29 17 0.61
ACGTcount: A:0.33, C:0.25, G:0.02, T:0.41
Consensus pattern (30 bp):
CAATTTAAACCCTCAATATACATTTTTACT
Found at i:62275623 original size:39 final size:39
Alignment explanation
Indices: 62275579--62275656 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
62275569 AACTCTGTGA
62275579 TATTTTGAATCAAAGGTGATTACTTAAATGAGGGAAGAC
1 TATTTTGAATCAAAGGTGATTACTTAAATGAGGGAAGAC
*
62275618 TATTTTGAATCAAAGGTGATTACTTAAATGAGGGGAGAC
1 TATTTTGAATCAAAGGTGATTACTTAAATGAGGGAAGAC
62275657 ACCTAGGTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.31
Consensus pattern (39 bp):
TATTTTGAATCAAAGGTGATTACTTAAATGAGGGAAGAC
Found at i:62290503 original size:48 final size:48
Alignment explanation
Indices: 62290432--62290552 Score: 224
Period size: 48 Copynumber: 2.5 Consensus size: 48
62290422 NNNNNNNNNN
*
62290432 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTG
1 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATATG
62290480 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATATG
1 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATATG
*
62290528 GTAAAGCCGAATGGCTAATGCGAAA
1 GTAAAGCCGAATGGCTAATGTGAAA
62290553 CNNNNNNNNN
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 71 1.00
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.28
Consensus pattern (48 bp):
GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATATG
Found at i:62295084 original size:12 final size:12
Alignment explanation
Indices: 62295067--62295092 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
62295057 AAAATTCATG
62295067 AAAATTAATTAA
1 AAAATTAATTAA
62295079 AAAATTAATTAA
1 AAAATTAATTAA
62295091 AA
1 AA
62295093 TTCAACATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AAAATTAATTAA
Found at i:62302213 original size:28 final size:29
Alignment explanation
Indices: 62302176--62302271 Score: 122
Period size: 29 Copynumber: 3.3 Consensus size: 29
62302166 AAGTCTACAT
* * *
62302176 ACATGCATATGGCCCACTAGGCCC-ACTC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
62302204 TCATTCATATAGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
62302233 ACATTCGTATGTCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
62302262 ACATTCATAT
1 ACATTCATAT
62302272 ACATGCTTTT
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 20 0.35
29 37 0.65
ACGTcount: A:0.29, C:0.32, G:0.12, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:62307904 original size:51 final size:51
Alignment explanation
Indices: 62307739--62307916 Score: 238
Period size: 52 Copynumber: 3.5 Consensus size: 51
62307729 ACTAGTGACT
*
62307739 CAAGTGTGGTACTATGTGAAGGCCACTTTGGGAAG-AGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
* *
62307788 CAAGTGTGGTACTATGTGAAGGCCAGTTTATGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCA
* * * *
62307840 CAAGTGTAGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTTGATTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
62307891 CAAG-GATGGTACTATGTGCAA-GCCAC
1 CAAGTG-TGGTACTATGTG-AAGGCCAC
62307917 CGGGTATCCA
Statistics
Matches: 114, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
49 32 0.28
50 1 0.01
51 40 0.35
52 41 0.36
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
Found at i:62310462 original size:39 final size:40
Alignment explanation
Indices: 62310408--62310545 Score: 201
Period size: 40 Copynumber: 3.5 Consensus size: 40
62310398 AAACCAAGTA
* *
62310408 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
62310447 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
62310487 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
62310527 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
62310546 TTACCATCCG
Statistics
Matches: 92, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
39 15 0.16
40 77 0.84
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:62313779 original size:24 final size:25
Alignment explanation
Indices: 62313729--62313780 Score: 88
Period size: 26 Copynumber: 2.1 Consensus size: 25
62313719 TCCCGGTAGC
62313729 TTGCTCTCTCCATTTCTACCCATATT
1 TTGCTCTCTCCATTTCTACCCA-ATT
62313755 TTGCTCTCTCCATTTCTACCC-ATT
1 TTGCTCTCTCCATTTCTACCCAATT
62313779 TT
1 TT
62313781 CATGCTAGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 5 0.19
26 21 0.81
ACGTcount: A:0.13, C:0.35, G:0.04, T:0.48
Consensus pattern (25 bp):
TTGCTCTCTCCATTTCTACCCAATT
Found at i:62320180 original size:40 final size:40
Alignment explanation
Indices: 62320162--62321067 Score: 1676
Period size: 40 Copynumber: 22.7 Consensus size: 40
62320152 AAGTGACCAT
62320162 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
62320202 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
62320242 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
62320282 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
62320322 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
62320362 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
62320402 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
62320442 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
62320482 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
62320522 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
62320562 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
62320602 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
62320642 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
62320682 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
62320722 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
62320762 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
62320802 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
62320842 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
62320882 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
62320922 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
* * * *
62320962 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
** *
62321001 ATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
* *
62321042 A-CCGGGCTATG-TCCCGAAGGCATTTG
1 ATCCGGACTAAGAT-CCGAAGGCATTTG
62321068 AACGAGGAGC
Statistics
Matches: 855, Mismatches: 9, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
39 35 0.04
40 818 0.96
41 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
Found at i:62328724 original size:39 final size:40
Alignment explanation
Indices: 62328621--62328844 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
62328611 TTGAATGATG
* * *
62328621 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
*
62328661 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* *
62328701 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
62328740 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACGAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
62328779 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTA-AA
*
62328820 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62328845 AATGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
39 71 0.43
40 81 0.49
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:62328798 original size:79 final size:80
Alignment explanation
Indices: 62328621--62328844 Score: 278
Period size: 79 Copynumber: 2.8 Consensus size: 80
62328611 TTGAATGATG
* * * *
62328621 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATATCCGGGCTAAGACCCGAAGGCAT
*
62328684 TTGTGCGAGATACTAAA
64 TTGTGCGAGATACGAAA
*
62328701 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA-TCCGGGCTAAGACCCGAAGGCATT
*
62328763 TGTGCGAGTTACGAAA
65 TGTGCGAGATACGAAA
* * * * *
62328779 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
62328844 G
66 G
62328845 AATGAGGAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
78 35 0.28
79 56 0.44
80 34 0.27
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACGAAA
Found at i:62328867 original size:79 final size:78
Alignment explanation
Indices: 62328674--62328846 Score: 197
Period size: 78 Copynumber: 2.2 Consensus size: 78
62328664 GGACTAAGAT
** * **
62328674 CCGAAGGCATTTGTGCGAGAT-ACTAAATCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAG-TGACGAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGATACTA
*
62328738 ATTCCGGGCTAAGC
65 ATACCGGGCTAAGC
** * *
62328752 CCGAAGGCATTTGTGCGAGTTACGAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTGACGAAATCCGGGTTAAG-CCCGAAGGCATTTGTGCGAGATACTA
*
62328816 ATAACCGGGCTATGTC
65 AT-ACCGGGCTAAG-C
62328832 CCGAAGGCATTTGAA
1 CCGAAGGCATTTGAA
62328847 TGAGGAGCTA
Statistics
Matches: 83, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
77 1 0.01
78 35 0.42
79 33 0.40
80 14 0.17
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
CCGAAGGCATTTGAACGAGTGACGAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGATACTAA
TACCGGGCTAAGC
Found at i:62329692 original size:42 final size:42
Alignment explanation
Indices: 62329633--62329717 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
62329623 TAAATAGTGA
62329633 ATAAATTATGTAAACGAACCTTGATGAATCTATTTTCATAGG
1 ATAAATTATGTAAACGAACCTTGATGAATCTATTTTCATAGG
62329675 ATAAATTATGTAAACGAACCTTGATGAATCTATTTTCATAGG
1 ATAAATTATGTAAACGAACCTTGATGAATCTATTTTCATAGG
62329717 A
1 A
62329718 AGGTAACGAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (42 bp):
ATAAATTATGTAAACGAACCTTGATGAATCTATTTTCATAGG
Found at i:62332381 original size:28 final size:30
Alignment explanation
Indices: 62332329--62332389 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
62332319 ATTTATTTTG
* *
62332329 CAATTTAACCCCTCAATTTACATTTTT-CT
1 CAATTTAAACCCTCAATATACATTTTTACT
*
62332358 CAATTTAAACCCT-AATATGCATTTTTACT
1 CAATTTAAACCCTCAATATACATTTTTACT
62332387 CAA
1 CAA
62332390 AATCACTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 11 0.39
29 17 0.61
ACGTcount: A:0.33, C:0.25, G:0.02, T:0.41
Consensus pattern (30 bp):
CAATTTAAACCCTCAATATACATTTTTACT
Found at i:62342361 original size:39 final size:39
Alignment explanation
Indices: 62342317--62342394 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
62342307 AACTCTGTGA
62342317 TATTTTGAATCAAAGGTGATTACTTAAATGAGGGAAGAC
1 TATTTTGAATCAAAGGTGATTACTTAAATGAGGGAAGAC
*
62342356 TATTTTGAATCAAAGGTGATTACTTAAATGAGGGGAGAC
1 TATTTTGAATCAAAGGTGATTACTTAAATGAGGGAAGAC
62342395 ACCTAGGTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.31
Consensus pattern (39 bp):
TATTTTGAATCAAAGGTGATTACTTAAATGAGGGAAGAC
Found at i:62350112 original size:61 final size:61
Alignment explanation
Indices: 62350017--62350138 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
62350007 TTTAGCCATG
62350017 TCAGAACTTTACCCGTTGAATTTATTTGAAATATCGATGGATAAATTCATATAGTACACTT
1 TCAGAACTTTACCCGTTGAATTTATTTGAAATATCGATGGATAAATTCATATAGTACACTT
62350078 TCAGAACTTTACCCGTTGAATTTATTTGAAATATCGATGGATAAATTCATATAGTACACTT
1 TCAGAACTTTACCCGTTGAATTTATTTGAAATATCGATGGATAAATTCATATAGTACACTT
62350139 AAAGTGTACA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (61 bp):
TCAGAACTTTACCCGTTGAATTTATTTGAAATATCGATGGATAAATTCATATAGTACACTT
Found at i:62358989 original size:47 final size:47
Alignment explanation
Indices: 62358935--62359128 Score: 262
Period size: 47 Copynumber: 4.1 Consensus size: 47
62358925 TTAGGATTTT
** * *
62358935 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCTA
*
62358982 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCTA
* * *
62359029 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCTA
* * * ***
62359076 ATGTGGTGAATATGAACATGCATATATGTGGTAAAATCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCTA
62359123 ATGTGA
1 ATGTGA
62359129 AATATGTATG
Statistics
Matches: 130, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCTA
Found at i:62359036 original size:94 final size:93
Alignment explanation
Indices: 62358935--62359173 Score: 275
Period size: 94 Copynumber: 2.5 Consensus size: 93
62358925 TTAGGATTTT
* *
62358935 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCTAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAATATGTATATATG-GATAAGGCCGAATGGCTAATGTGATGAATATGAACA
**
62359000 TGCATATATGTGATAAGGCCGAATGGCCA
65 TGCATATATGTGATAAAACCGAATGGCCA
** * * * *
62359029 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
1 ATGTGATGAATGTGAATATGTATATATG-GATAAGGCCGAATGGCTAATGTGATGAATATGAACA
* * *
62359094 TGCATATATGTGGTAAAATCGAATGGCTA
65 TGCATATATGTGATAAAACCGAATGGCCA
* *
62359123 ATGTGA-AATATGTATGAGATATGTATATATGG-TAAAGCCGAATGGCTAATG
1 ATGTGATGA-ATG--TGA-ATATGTATATATGGATAAGGCCGAATGGCTAATG
62359174 CGAAACATGT
Statistics
Matches: 120, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
93 1 0.01
94 89 0.74
95 17 0.14
96 4 0.03
97 9 0.08
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.28
Consensus pattern (93 bp):
ATGTGATGAATGTGAATATGTATATATGGATAAGGCCGAATGGCTAATGTGATGAATATGAACAT
GCATATATGTGATAAAACCGAATGGCCA
Found at i:62359084 original size:25 final size:25
Alignment explanation
Indices: 62359009--62359084 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
62358999 ATGCATATAT
62359009 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
62359034 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
62359056 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
62359081 GTGA
1 GTGA
62359085 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:62359262 original size:98 final size:96
Alignment explanation
Indices: 62359099--62359282 Score: 271
Period size: 98 Copynumber: 1.9 Consensus size: 96
62359089 GAACATGCAT
* *
62359099 ATATGTGGTAAAATCGAATGGCTAATGTGAAATATGTATGAGATATGTATATATGGTAAAGCCGA
1 ATATGTGGTAAAACCGAATGGCTAATGTGAAATATATATGAGATATGTATATATGGTAAAGCCGA
62359164 ATGGCTAATGCGAAACATGTATGAGATATGC
66 ATGGCTAATGCGAAACATGTATGAGATATGC
* *
62359195 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAACCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATATGGTAAAGC
* * *
62359259 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGCGAAACATGTA
62359283 GGCGATGTGC
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
95 1 0.01
96 25 0.32
97 2 0.03
98 50 0.64
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAACCGAATGGCTAATGTGAAATATATATGAGATATGTATATATGGTAAAGCCGA
ATGGCTAATGCGAAACATGTATGAGATATGC
Found at i:62359298 original size:50 final size:48
Alignment explanation
Indices: 62359098--62359282 Score: 264
Period size: 48 Copynumber: 3.8 Consensus size: 48
62359088 TGAACATGCA
**
62359098 TATATGTGGTAAAATCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
62359146 TATATATGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
62359194 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
62359244 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
62359283 GGCGATGTGC
Statistics
Matches: 120, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
47 1 0.01
48 74 0.62
49 4 0.03
50 40 0.33
51 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:62359536 original size:37 final size:37
Alignment explanation
Indices: 62359428--62359536 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
62359418 GGAAATATAT
*
62359428 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
62359465 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
62359502 TCCGGATAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
62359537 CGTCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:62361128 original size:40 final size:40
Alignment explanation
Indices: 62360805--62361116 Score: 480
Period size: 40 Copynumber: 7.8 Consensus size: 40
62360795 GAGAATTGAG
*
62360805 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
62360845 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
62360885 AGTGATATATTCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
62360925 AGTGATCTATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
**
62360965 AGTGATGTATCCGGGCTAAGTCTAGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
62361005 AGTGATGTATCTGGGCTAAGTCCCGAAGAGCATTCGTGCC
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
62361045 AGTGACGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
62361085 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
62361117 ATCATGCTGG
Statistics
Matches: 246, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 246 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:62363611 original size:22 final size:22
Alignment explanation
Indices: 62363583--62363658 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
62363573 AGGTGTGTAT
62363583 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ***
62363605 ATGTGATGAATGTGAAAGTGTGTAT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
62363630 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
62363652 ATGTGAT
1 ATGTGAT
62363659 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:62363644 original size:47 final size:47
Alignment explanation
Indices: 62363575--62364673 Score: 1757
Period size: 47 Copynumber: 23.4 Consensus size: 47
62363565 GGTGTACAAG
* *
62363575 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
62363622 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
62363669 GTGTGTATATGTGATATGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
62363716 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
62363763 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
62363810 GTGTATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
62363857 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
62363904 GTGTATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
62363951 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
62363998 GTGTATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
62364045 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
62364092 GTGTATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
62364139 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
62364186 GTGTATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
62364233 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
62364280 GTGTATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
62364327 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
62364374 GTGTATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
62364421 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
62364468 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
62364515 GTGTGTATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * * * *
62364562 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
62364609 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
62364656 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
62364674 TCCCGAAGCG
Statistics
Matches: 975, Mismatches: 77, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 975 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:62363736 original size:94 final size:94
Alignment explanation
Indices: 62363572--62364673 Score: 1970
Period size: 94 Copynumber: 11.7 Consensus size: 94
62363562 ATTGGTGTAC
* *
62363572 AAGGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGAT
1 AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
* * *
62363637 AAGGCCTAATGGCCGATGTGATGAATGTG
66 AAGGCCGAATAGCCAATGTGATGAATGTG
* * *
62363666 AAAGTGTGTATATGTGATATGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
*
62363731 AAGGCCGAATGGCCAATGTGATGAATGTG
66 AAGGCCGAATAGCCAATGTGATGAATGTG
* * *
62363760 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
62363825 AAGGCCGAATAGCCAATGTGATGAATGTG
66 AAGGCCGAATAGCCAATGTGATGAATGTG
62363854 AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
62363919 AAGGCCGAATAGCCAATGTGATGAATGTG
66 AAGGCCGAATAGCCAATGTGATGAATGTG
62363948 AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
62364013 AAGGCCGAATAGCCAATGTGATGAATGTG
66 AAGGCCGAATAGCCAATGTGATGAATGTG
62364042 AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
62364107 AAGGCCGAATAGCCAATGTGATGAATGTG
66 AAGGCCGAATAGCCAATGTGATGAATGTG
62364136 AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
62364201 AAGGCCGAATAGCCAATGTGATGAATGTG
66 AAGGCCGAATAGCCAATGTGATGAATGTG
62364230 AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
62364295 AAGGCCGAATAGCCAATGTGATGAATGTG
66 AAGGCCGAATAGCCAATGTGATGAATGTG
62364324 AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
62364389 AAGGCCGAATAGCCAATGTGATGAATGTG
66 AAGGCCGAATAGCCAATGTGATGAATGTG
62364418 AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
*
62364483 AAGGCCGAATGGCCAATGTGATGAATGTG
66 AAGGCCGAATAGCCAATGTGATGAATGTG
* * * *
62364512 AAAGTGTGTATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATGAGAT
1 AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
* * * * *
62364577 AAGACCTAATGGCCGATGTGATGGATGTG
66 AAGGCCGAATAGCCAATGTGATGAATGTG
* * * *
62364606 AAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGAT
1 AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
62364671 AAG
66 AAG
62364674 TCCCGAAGCG
Statistics
Matches: 978, Mismatches: 30, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 978 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
AAGGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGCCGAATAGCCAATGTGATGAATGTG
Found at i:62363752 original size:22 final size:22
Alignment explanation
Indices: 62363724--62363799 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
62363714 AAGTGTATAT
62363724 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
62363746 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
62363770 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
62363793 ATGTGAT
1 ATGTGAT
62363800 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:62369152 original size:17 final size:17
Alignment explanation
Indices: 62369126--62369159 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
62369116 AATAGTAAAC
*
62369126 CAGTGTAGTAACAGTAA
1 CAGTGCAGTAACAGTAA
*
62369143 CAGTGCAGTAATAGTAA
1 CAGTGCAGTAACAGTAA
62369160 ACTGTGCAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.24
Consensus pattern (17 bp):
CAGTGCAGTAACAGTAA
Found at i:62369543 original size:26 final size:26
Alignment explanation
Indices: 62369514--62369595 Score: 65
Period size: 27 Copynumber: 3.1 Consensus size: 26
62369504 TATAAACATA
62369514 TATCACATAGGGAAAAACAGTCATTT
1 TATCACATAGGGAAAAACAGTCATTT
** * *
62369540 TATCAGTTAGGGGCAAAACAATCATTT
1 TATCACATA-GGGAAAAACAGTCATTT
* * * * *
62369567 TACCTCATAAGTACAAAATAGTCATTT
1 TATCACATAGGGA-AAAACAGTCATTT
62369594 TA
1 TA
62369596 CCAATTTAAG
Statistics
Matches: 41, Mismatches: 13, Indels: 3
0.72 0.23 0.05
Matches are distributed among these distances:
26 8 0.20
27 33 0.80
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.30
Consensus pattern (26 bp):
TATCACATAGGGAAAAACAGTCATTT
Found at i:62369743 original size:18 final size:18
Alignment explanation
Indices: 62369720--62369765 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
62369710 CCATAACACG
62369720 GCCCATGTGGGCCCTCAC
1 GCCCATGTGGGCCCTCAC
62369738 GCCCATGTGGGCCCTCAC
1 GCCCATGTGGGCCCTCAC
*
62369756 GCCTATGTGG
1 GCCCATGTGG
62369766 CCCACAAAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.11, C:0.39, G:0.30, T:0.20
Consensus pattern (18 bp):
GCCCATGTGGGCCCTCAC
Found at i:62373768 original size:23 final size:22
Alignment explanation
Indices: 62373719--62373828 Score: 96
Period size: 23 Copynumber: 4.7 Consensus size: 22
62373709 GATATATCAA
62373719 CTCATAAGAGCTTACT-ATTTTCAG
1 CTCAT-AGAGCTTACTGA--TTCAG
62373743 CTCATAGGAGCTTACTGATTCAG
1 CTCATA-GAGCTTACTGATTCAG
* *
62373766 CTCGTAGGAGCTTACTAATTCAG
1 CTCATA-GAGCTTACTGATTCAG
* * * *
62373789 CTCGTCAGAGCTTACCGTTTTAG
1 CTCAT-AGAGCTTACTGATTCAG
62373812 CTCAATAGAGCTTACTG
1 CTC-ATAGAGCTTACTG
62373829 TCCGTCAGGT
Statistics
Matches: 74, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
23 57 0.77
24 16 0.22
25 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (22 bp):
CTCATAGAGCTTACTGATTCAG
Found at i:62373814 original size:46 final size:47
Alignment explanation
Indices: 62373725--62373827 Score: 113
Period size: 46 Copynumber: 2.2 Consensus size: 47
62373715 TCAACTCATA
* * *
62373725 AGAGCTTACTATTTTCAGCTCATAGGAGCTTACTGATTCAGCTC-GT
1 AGAGCTTACTATATTCAGCTCATAGGAGCTTACCGATTCAGCTCAAT
* * *
62373771 AGGAGCTTACTA-ATTCAGCTCGTCA-GAGCTTACCGTTTTAGCTCAAT
1 A-GAGCTTACTATATTCAGCTCAT-AGGAGCTTACCGATTCAGCTCAAT
62373818 AGAGCTTACT
1 AGAGCTTACT
62373828 GTCCGTCAGG
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
46 35 0.73
47 13 0.27
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.33
Consensus pattern (47 bp):
AGAGCTTACTATATTCAGCTCATAGGAGCTTACCGATTCAGCTCAAT
Found at i:62375292 original size:5 final size:5
Alignment explanation
Indices: 62375282--62375308 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
62375272 CTTCCTCAAT
62375282 TCTTC TCTTC TCTTC TCTTC TCTTC TC
1 TCTTC TCTTC TCTTC TCTTC TCTTC TC
62375309 ACTCTCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (5 bp):
TCTTC
Found at i:62376641 original size:18 final size:18
Alignment explanation
Indices: 62376615--62376679 Score: 85
Period size: 18 Copynumber: 3.6 Consensus size: 18
62376605 ATGACTTCTA
*
62376615 TACTATTACTGCACTAAT
1 TACTGTTACTGCACTAAT
**
62376633 TACTGTTACTATACTAAT
1 TACTGTTACTGCACTAAT
*
62376651 TACTGTTACTGCACTTAT
1 TACTGTTACTGCACTAAT
*
62376669 TATTGTTACTG
1 TACTGTTACTG
62376680 TATCGATTAC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.28, C:0.18, G:0.09, T:0.45
Consensus pattern (18 bp):
TACTGTTACTGCACTAAT
Found at i:62376676 original size:36 final size:36
Alignment explanation
Indices: 62376615--62376695 Score: 101
Period size: 36 Copynumber: 2.2 Consensus size: 36
62376605 ATGACTTCTA
*
62376615 TACTATTACTGCACTAATTACTGTTACTATA-CTAAT
1 TACTGTTACTGCACTAATTACTGTTACTATATC-AAT
* * * *
62376651 TACTGTTACTGCACTTATTATTGTTACTGTATCGAT
1 TACTGTTACTGCACTAATTACTGTTACTATATCAAT
62376687 TACTGTTAC
1 TACTGTTAC
62376696 AAAACTGTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
36 38 0.97
37 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.10, T:0.44
Consensus pattern (36 bp):
TACTGTTACTGCACTAATTACTGTTACTATATCAAT
Found at i:62384069 original size:18 final size:18
Alignment explanation
Indices: 62384039--62384125 Score: 93
Period size: 18 Copynumber: 4.8 Consensus size: 18
62384029 AGGACTTCTA
* *
62384039 TACTGTTACTGCACTTAT
1 TACTATTACTGCACTGAT
* *
62384057 TACTATTAATGCACCGAT
1 TACTATTACTGCACTGAT
*
62384075 TACTGTTACTGCACTGAT
1 TACTATTACTGCACTGAT
* * **
62384093 TACTGTTACTACACCAAT
1 TACTATTACTGCACTGAT
62384111 TACTATTACTGCACT
1 TACTATTACTGCACT
62384126 ATTTATTTTT
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 56 1.00
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (18 bp):
TACTATTACTGCACTGAT
Found at i:62384086 original size:36 final size:36
Alignment explanation
Indices: 62384039--62384125 Score: 120
Period size: 36 Copynumber: 2.4 Consensus size: 36
62384029 AGGACTTCTA
* * *
62384039 TACTGTTACTGCACTTATTACTATTAATGCACCGAT
1 TACTGTTACTGCACTGATTACTATTAATACACCAAT
* *
62384075 TACTGTTACTGCACTGATTACTGTTACTACACCAAT
1 TACTGTTACTGCACTGATTACTATTAATACACCAAT
*
62384111 TACTATTACTGCACT
1 TACTGTTACTGCACT
62384126 ATTTATTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 45 1.00
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (36 bp):
TACTGTTACTGCACTGATTACTATTAATACACCAAT
Found at i:62388707 original size:19 final size:19
Alignment explanation
Indices: 62388683--62388720 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
62388673 TTGAGATTGC
*
62388683 CAACCTATTTGCTTGAAAT
1 CAACCTATTTGCCTGAAAT
62388702 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
62388721 TATTCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:62396332 original size:14 final size:14
Alignment explanation
Indices: 62396313--62396343 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
62396303 TAACCATACA
62396313 AATGATTACTTTCG
1 AATGATTACTTTCG
62396327 AATGATTACTTTCG
1 AATGATTACTTTCG
62396341 AAT
1 AAT
62396344 TCTTTTATCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (14 bp):
AATGATTACTTTCG
Found at i:62404576 original size:46 final size:46
Alignment explanation
Indices: 62404509--62404821 Score: 581
Period size: 46 Copynumber: 6.8 Consensus size: 46
62404499 NNNNNNNGCA
62404509 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
62404555 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
62404601 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
62404647 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
62404693 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
62404739 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
62404785 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62404822 GCGGGTTACA
Statistics
Matches: 262, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 262 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:62408645 original size:39 final size:39
Alignment explanation
Indices: 62408525--62408650 Score: 173
Period size: 40 Copynumber: 3.2 Consensus size: 39
62408515 GCTACTTGCT
* *
62408525 CAAATGCCTTCGGCACTTAGCCCAGTTATAGTAACTCGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGTTATAGTAACTCGCA
62408565 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGTTATAGTAACTCGCA
* * *
62408605 CAAATGCCTTCGGGCTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGCTTAGCCCGGTTA-TAGTAACTCGCA
62408644 CAAATGC
1 CAAATGC
62408651 TAGCTTATTA
Statistics
Matches: 79, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
38 1 0.01
39 27 0.34
40 51 0.65
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGTTATAGTAACTCGCA
Found at i:62410417 original size:90 final size:90
Alignment explanation
Indices: 62410264--62410446 Score: 330
Period size: 90 Copynumber: 2.0 Consensus size: 90
62410254 TCAAATGCTG
* * *
62410264 TGGGTAATGGAATCGGGGCAGTCTTGGTATCCCTAAGAGGAAATCATTATCCATTCACTAGTAAA
1 TGGGTAATGGAATCAGGGCAGTCTTGGTATCCCCAAGAGGAAATCAATATCCATTCACTAGTAAA
62410329 TTGGATTTTGATTGTACGAATAACA
66 TTGGATTTTGATTGTACGAATAACA
*
62410354 TGGGTAATGGAATCAGGGCAGTCTTGGTATCCCCAAGAGTAAATCAATATCCATTCACTAGTAAA
1 TGGGTAATGGAATCAGGGCAGTCTTGGTATCCCCAAGAGGAAATCAATATCCATTCACTAGTAAA
62410419 TTGGATTTTGATTGTACGAATAACA
66 TTGGATTTTGATTGTACGAATAACA
62410444 TGG
1 TGG
62410447 CGGAATATGA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
90 89 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.31
Consensus pattern (90 bp):
TGGGTAATGGAATCAGGGCAGTCTTGGTATCCCCAAGAGGAAATCAATATCCATTCACTAGTAAA
TTGGATTTTGATTGTACGAATAACA
Found at i:62413164 original size:44 final size:44
Alignment explanation
Indices: 62413103--62415465 Score: 3060
Period size: 44 Copynumber: 54.5 Consensus size: 44
62413093 AATCCAAGAT
* * * *
62413103 GATTTAGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * * *
62413147 GATTTGGCGTTTTTGTAGTGGTGGAGAGCAGATCAAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
***
62413191 GATTTGGCGTCTCTGTAGCAATGGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
62413231 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
62413275 AATTTGGCGTCTCTGTAGTGGCGGAGAGCAAATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * **
62413319 GATTTGGCATCTCCGTAGCGGTAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
62413363 GATTTGGCGTCTCCGTAGTGGCAGAGAGCAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* **
62413407 GATTTGGCGTCTCTGTAGCAGTAGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
62413447 GATTTGGCATCTCTGTAGTGGCGGAGAGTAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
62413491 GATTTGGCGTCTCTGTAGCAGCGGAGAGCAGATAGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
62413535 GATTTGGCGTCTCCGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
62413579 GATTTGGCGTCTCTGTAGCAGCGGAGAGCAGATAGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
62413623 GATTTGGCGTCTCCGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* **
62413667 GATTTGGCGTCTCCGTAGCGGTAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * * *
62413711 GATTTGGCGTCTCTGTAGTGGCAGAGAGCAAATTGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
62413755 AATTTGGCGTCTCTGTAGCGGCAGAGAGTAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * * *
62413799 GATTTGGCGTCTCTGTAGTGGCAGAGAGCAAATTGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
62413843 AATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * * *
62413887 GATTTGGCGTATCTGTAGCGACAGAGAACAGATTGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
62413931 GATTTGGCGT-TCCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCT-CTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
62413975 GATTTTGTGTCTCTATAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
62414019 GATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
62414063 GATTTGGCGTCTCCGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
62414107 GATTTGGCGTCTCTGTAGCAGCGGAGAGCAGATTGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
62414151 GATTTGGCGTCTCCGTAGCGGTGGAGAGTAGATCGAAGATATCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * * *
62414195 GATTTGGCGTCTCCGTAGTGGCAGAGAGTAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
62414239 GATTTGGCGTCTCTGTAGCGGTGGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
62414279 GATTTGGCATCTTTGTAGTGGCGGAGAGTAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* ** * *
62414323 GATTTGGCGTCTCTATCA-TAGCGGAGAGCAGATAGAAGATACCA
1 GATTTGGCGTCTCTGT-AGCGGCGGAGAGCAGATCGAAGATAACA
* *
62414367 GATTTGGCGTCTCCGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
62414411 GATTTGGCCTCCCCGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
62414455 GATTTGGCGTCTCT-TAGTGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
62414498 AATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
62414542 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* ** *
62414586 AATTTGGCGTCTCTGTAGCGGCGGAGAATAGATCAAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
62414626 GATTTGGCATCTCTGTAGTGGCGGAGCGTAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
** *
62414670 GATTTGGCGTCTCTGTAGCGGCGGAGAATAGATCAAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
62414710 GATTTGGCATCTCTGTAGTGGCGGAGCGTAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
** *
62414754 GATTTGGCGTCTCTGTAGCGGCGGAGAATAGATCAAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
62414794 GATTTGGCATCTCTGTAGTGGCGGAGCGTAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
** *
62414838 GATTTGGCGTCTCTGTAGCGGCGGAGAATAGATCAAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
62414878 GATTTGGCATCTCTGTAGTGGCGGAGAGTAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*** * * *
62414922 GATTTGGCGTCTCTGTAATAGCGGAGAACAGATAGAAGATACCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
62414966 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
62415010 GATTTGGCNTCTCTGTAGCGACGGAGAGCA-AGTCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGA-TCGAAGATAACA
* *
62415054 GATTTGGCGTCTCTGTAGCGGCGGAGAACAGGTCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
62415098 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAAATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
62415142 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
62415182 GATTTGGCATTTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * * *
62415226 GATTTGGCGTATCTGTAGCGACGGAGAGTAAATCAAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
62415270 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
62415314 GATTTGGC-TCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
62415357 GATTTGGC-TCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
62415400 GATTTGGC-TCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
62415443 GATTTGGCGTCTCT-TAGTGGCGG
1 GATTTGGCGTCTCTGTAGCGGCGG
62415466 GGAGGAGAAC
Statistics
Matches: 2040, Mismatches: 239, Indels: 81
0.86 0.10 0.03
Matches are distributed among these distances:
40 283 0.14
43 179 0.09
44 1576 0.77
45 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:62415885 original size:44 final size:44
Alignment explanation
Indices: 62415801--62416626 Score: 1139
Period size: 44 Copynumber: 19.0 Consensus size: 44
62415791 NNNNNNNNGT
* *
62415801 GGCGGAGAGCAGATCGTAGAT----GATTTGGCATCTCTGTAGC
1 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
* * * *
62415841 GGCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTATCTATAGC
1 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
*** * * **
62415885 GATAGAGAGTAGATCGAAGATAACTGATTTGGCGTCTCTGTAAT
1 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
*
62415929 GGCGGAGAGGAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
1 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
* *
62415973 GACAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
1 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
* *
62416017 GGCGGAGAGCAGATCGAAGATAACAGGTTTGGCGTCTCCGTAGC
1 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
* * *
62416061 GGCGGAGAGTAGATCGAAGATAACAGATTTGGTGTCTCTATAGC
1 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
*
62416105 GGCGGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAGC
1 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
*
62416149 GGCGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTAGC
1 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
* * *
62416193 GGCAGAGAGTAGATCGAAGATAACAGATTTGGCGTCTCTGTAGT
1 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
* *
62416237 GGCAGAGAGCAGATCGAAGAT----GATTTGGCATCTCTGTAGC
1 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
* * * *
62416277 GGCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTATCTATAGC
1 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
*** * * **
62416321 GATAGAGAGTAGATCGAAGATAACTGATTTGGCGTCTCTGTAAT
1 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
*
62416365 GGCGGAGAGGAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
1 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
* *
62416409 GACAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
1 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
* * *
62416453 GGCGGAGAGTAGATCGAAGATAACAGGTTTGGCGTCTCCGTAGC
1 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
* * *
62416497 GGCGGAGAGTAGATCGAAGATAACAGATTTGGTGTCTCTATAGC
1 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
*
62416541 GGCGGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAGC
1 GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
62416585 GGCGGAGAGCAGATCGAAGATAAC-GAATTTGGCGTCTCTGTA
1 GGCGGAGAGCAGATCGAAGATAACAG-ATTTGGCGTCTCTGTA
62416627 TTAGACGGGG
Statistics
Matches: 695, Mismatches: 82, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
40 57 0.08
43 1 0.00
44 637 0.92
ACGTcount: A:0.29, C:0.16, G:0.33, T:0.22
Consensus pattern (44 bp):
GGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGC
Found at i:62418142 original size:19 final size:19
Alignment explanation
Indices: 62418118--62418155 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
62418108 TTGAGATTGC
*
62418118 CAACCTATTTGCTTGAAAT
1 CAACCTATTTGCCTGAAAT
62418137 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
62418156 TATTCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:62419291 original size:43 final size:42
Alignment explanation
Indices: 62419202--62419313 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 42
62419192 TGAGTTTACG
** *
62419202 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCCA
* * *
62419244 TGTAAGACCATAGT-TGGGCTATTGGCATTGATTTGAGATCCCA
1 TGTAAGACCATA-TCTGGGATA-TGGCATCGATATGAGATCCCA
*
62419287 TGTAAGACCATTTCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
62419314 TGGTATGGTA
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 25 0.42
43 34 0.58
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCCA
Found at i:62433561 original size:247 final size:246
Alignment explanation
Indices: 62433120--62433615 Score: 956
Period size: 247 Copynumber: 2.0 Consensus size: 246
62433110 GTATGGCACC
*
62433120 ATCAGAATTGAGAGAGTTGAAAACTCAGTTGCAAGAGTTGACGGATAGAGGTTTCGCCCGACCAA
1 ATCAGAATTGAGAGAGTTGAAAACTCAATTGCAAGAGTTGACGGATAGAGGTTTCGCCCGACCAA
62433185 GTTTCTCACCTTGGGGTGCACCAGTATTGTTTGTGAAAAAGAAAGACGGAACCATGAGAATGTGC
66 GTTTCTCACCTTGGGGTGCACCAGTATTGTTTGTGAAAAAGAAAGACGGAACCATGAGAATGTGC
62433250 ATTGACTATCGTCAATTAAATAAAGTGACAATAAAGAACAAGTATCCGTTTTCGCGTATTGATGA
131 ATTGACTATCGTCAATTAAATAAAGTGACAATAAAGAACAAGTATCCGTTTTCGCGTATTGATGA
* *
62433315 TTTGTTTGATCAGCTGAAGGGAGCCTTAGTGTTTTCGAAGATAGATTTGAG
196 TTTGTTTGATCAGCTGAAGGGAGCCTCAGTGTTTTCAAAGATAGATTTGAG
62433366 ATCAGAAATTGAGAGAGTTGAAAACTCAATTGCAAGAGTTGACGGATAGAGGTTTCGCCCGACCA
1 ATCAG-AATTGAGAGAGTTGAAAACTCAATTGCAAGAGTTGACGGATAGAGGTTTCGCCCGACCA
62433431 AGTTTCTCACCTTGGGGTGCACCAGTATTGTTTGTGAAAAAGAAAGACGGAACCATGAGAATGTG
65 AGTTTCTCACCTTGGGGTGCACCAGTATTGTTTGTGAAAAAGAAAGACGGAACCATGAGAATGTG
62433496 CATTGACTATCGTCAATTAAATAAAGTGACAATAAAGAACAAGTATCCGTTTTCGCGTATTGATG
130 CATTGACTATCGTCAATTAAATAAAGTGACAATAAAGAACAAGTATCCGTTTTCGCGTATTGATG
62433561 ATTTGTTTGATCAGCTGAAGGGAGCCTCAGTGTTTTCAAAGATAGATTTGAG
195 ATTTGTTTGATCAGCTGAAGGGAGCCTCAGTGTTTTCAAAGATAGATTTGAG
62433613 ATC
1 ATC
62433616 GGGTTATTAT
Statistics
Matches: 246, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
246 5 0.02
247 241 0.98
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (246 bp):
ATCAGAATTGAGAGAGTTGAAAACTCAATTGCAAGAGTTGACGGATAGAGGTTTCGCCCGACCAA
GTTTCTCACCTTGGGGTGCACCAGTATTGTTTGTGAAAAAGAAAGACGGAACCATGAGAATGTGC
ATTGACTATCGTCAATTAAATAAAGTGACAATAAAGAACAAGTATCCGTTTTCGCGTATTGATGA
TTTGTTTGATCAGCTGAAGGGAGCCTCAGTGTTTTCAAAGATAGATTTGAG
Found at i:62438558 original size:40 final size:40
Alignment explanation
Indices: 62438503--62438775 Score: 469
Period size: 40 Copynumber: 6.8 Consensus size: 40
62438493 TTATTTGATG
*
62438503 TGGAATGGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
* *
62438543 TGGAATCGTATCCGGGTTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
62438583 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
62438623 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
62438663 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
62438703 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
* * *
62438743 TGGAA-TGACATCCGGG-TTAAAAACCTGCAGGCT
1 TGGAATTG-TATCCGGGCTTAAAGACCCGCAGGCT
62438776 GTGCTAGATA
Statistics
Matches: 225, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
39 17 0.08
40 208 0.92
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
Found at i:62453773 original size:79 final size:81
Alignment explanation
Indices: 62453637--62453821 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
62453627 TTGAATGATG
* *
62453637 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
62453701 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
62453716 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
62453778 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
62453796 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62453822 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:62453835 original size:40 final size:40
Alignment explanation
Indices: 62453638--62453821 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
62453628 TGAATGATGT
* * * *
62453638 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
62453678 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
62453718 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
62453756 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
62453797 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
62453822 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:62453843 original size:79 final size:79
Alignment explanation
Indices: 62453638--62453854 Score: 192
Period size: 79 Copynumber: 2.7 Consensus size: 79
62453628 TGAATGATGT
** * * * ** *
62453638 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCAAT
*
62453701 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
62453718 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCAATTGT
*
62453783 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
62453797 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
62453855 TACGTGATTT
Statistics
Matches: 115, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 70 0.61
80 42 0.37
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCAATTGT
GCGAGATACTAATA
Found at i:62471659 original size:26 final size:26
Alignment explanation
Indices: 62471590--62471659 Score: 72
Period size: 26 Copynumber: 2.8 Consensus size: 26
62471580 ATATAGCAGA
* *
62471590 AAGCTCATAAA-AGCC-ATAATCAGG
1 AAGCTCACAAAGAGCCTTTAATCAGG
* * * *
62471614 AAGTTCACAAAGAACTTTTAATGAGG
1 AAGCTCACAAAGAGCCTTTAATCAGG
62471640 AAGCTCACAAAGAGCCTTTA
1 AAGCTCACAAAGAGCCTTTA
62471660 GTCAAGAGCT
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
24 9 0.26
25 2 0.06
26 24 0.69
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (26 bp):
AAGCTCACAAAGAGCCTTTAATCAGG
Found at i:62471850 original size:65 final size:64
Alignment explanation
Indices: 62471732--62471853 Score: 156
Period size: 65 Copynumber: 1.9 Consensus size: 64
62471722 AAGAACTGCG
* * *
62471732 GTTTTGTCTGCAACATATGCAATATCACAACATAGCATAAAGCAGGACACTCACAAATAGTTGC
1 GTTTTGTCTGCAACATATGCAAGATCACAACAGAGCATAAAGCAGAACACTCACAAATAGTTGC
* * * *
62471796 GTTTGTGTCTGCAATATATGCAGGATCACAACAGATCATATAA-CAGAACGCTCACAAA
1 GTTT-TGTCTGCAACATATGCAAGATCACAACAGAGCATA-AAGCAGAACACTCACAAA
62471854 GAAATGCGGA
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
64 4 0.08
65 43 0.88
66 2 0.04
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (64 bp):
GTTTTGTCTGCAACATATGCAAGATCACAACAGAGCATAAAGCAGAACACTCACAAATAGTTGC
Found at i:62474395 original size:45 final size:45
Alignment explanation
Indices: 62474290--62474461 Score: 235
Period size: 45 Copynumber: 3.9 Consensus size: 45
62474280 CTGAATTCAT
* * * *
62474290 TCACCGACATT-TCGCCTGCTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
** * *
62474332 TCACTAGCATTATAGCCTGCTAGGCTCAAAAGCCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
62474377 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
62474422 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
62474462 ATACTGTGCG
Statistics
Matches: 115, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
42 8 0.07
43 16 0.14
44 4 0.03
45 86 0.75
46 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:62474440 original size:90 final size:86
Alignment explanation
Indices: 62474248--62474461 Score: 229
Period size: 90 Copynumber: 2.5 Consensus size: 86
62474238 TTTTATCAAA
* * * * * *
62474248 TCACCGGCATT-CAGCCTTCTAGGTTTAAAAACCTGAAT-TCATTCACCGACATTTCGCCTGCTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCTGAATATCATTCACCGACATTTAGCCTGCTA
* *
62474311 GGCTCGAAGCCCGATATCATT
66 GGCTCAAAGCCCGATATCATC
** *
62474332 TCACTAGCATTATAGCCTGCTAGGCTCAAAAGCCTGAATAGT-ATCTCACCGGCATTATAGCCTG
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCTGAATA-TCAT-TCACCGACATT-TAGCCTG
62474396 CTAGGCTCAAAGGCCCGAATAGT-ATC
63 CTAGGCTCAAA-GCCCG-ATA-TCATC
* *
62474422 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCTGAATA
62474462 ATACTGTGCG
Statistics
Matches: 107, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
84 9 0.08
85 22 0.21
86 2 0.02
87 11 0.10
88 16 0.15
89 5 0.05
90 41 0.38
91 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (86 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCTGAATATCATTCACCGACATTTAGCCTGCTA
GGCTCAAAGCCCGATATCATC
Found at i:62475325 original size:47 final size:47
Alignment explanation
Indices: 62475271--62475363 Score: 152
Period size: 47 Copynumber: 2.0 Consensus size: 47
62475261 AAAATTTACT
*
62475271 TTAACTAAGTAACTTATCC-AGAAATATTAAGGGAAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGA-AAATATTAAGAGAAAATTTAACAAGC
*
62475318 TTAACTAAGTAACTTATCCGAAAATATTAAGAGCAAATTTAACAAG
1 TTAACTAAGTAACTTATCCGAAAATATTAAGAGAAAATTTAACAAG
62475364 TTTTAAATTC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
47 42 0.98
48 1 0.02
ACGTcount: A:0.47, C:0.13, G:0.12, T:0.28
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCGAAAATATTAAGAGAAAATTTAACAAGC
Found at i:62476195 original size:47 final size:47
Alignment explanation
Indices: 62476141--62476233 Score: 152
Period size: 47 Copynumber: 2.0 Consensus size: 47
62476131 AAAATTTACT
*
62476141 TTAACTAAGTAACTTATCC-AGAAATATTAAGGGAAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGA-AAATATTAAGAGAAAATTTAACAAGC
*
62476188 TTAACTAAGTAACTTATCCGAAAATATTAAGAGCAAATTTAACAAG
1 TTAACTAAGTAACTTATCCGAAAATATTAAGAGAAAATTTAACAAG
62476234 TTTTAAATTC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
47 42 0.98
48 1 0.02
ACGTcount: A:0.47, C:0.13, G:0.12, T:0.28
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCGAAAATATTAAGAGAAAATTTAACAAGC
Found at i:62476905 original size:870 final size:870
Alignment explanation
Indices: 62475226--62476966 Score: 3482
Period size: 870 Copynumber: 2.0 Consensus size: 870
62475216 AATTTATACA
62475226 CACCATTAACCTAGTATCAATTAACTAAGTACTTTAAAATTTACTTTAACTAAGTAACTTATCCA
1 CACCATTAACCTAGTATCAATTAACTAAGTACTTTAAAATTTACTTTAACTAAGTAACTTATCCA
62475291 GAAATATTAAGGGAAAATTTAACAAGCTTAACTAAGTAACTTATCCGAAAATATTAAGAGCAAAT
66 GAAATATTAAGGGAAAATTTAACAAGCTTAACTAAGTAACTTATCCGAAAATATTAAGAGCAAAT
62475356 TTAACAAGTTTTAAATTCAACTTATAATTTGAGCATAACTCATCAAGGCATCAACACTAATTTAT
131 TTAACAAGTTTTAAATTCAACTTATAATTTGAGCATAACTCATCAAGGCATCAACACTAATTTAT
62475421 TATCCAAACAACCATAGCTGAATACACATATTCTTTCATTCATTCTTAACAAAATTCTATCAAGC
196 TATCCAAACAACCATAGCTGAATACACATATTCTTTCATTCATTCTTAACAAAATTCTATCAAGC
62475486 TTAAATCTCCATTTCATCATTTTAAAATGCAACATTACTCAATGTTATCTAAATTCACATTCGGC
261 TTAAATCTCCATTTCATCATTTTAAAATGCAACATTACTCAATGTTATCTAAATTCACATTCGGC
62475551 AACTACACATACACACAAGCCGATTTCACCTTCTTATCTAATGCACCTATATGAACATTTAGCTA
326 AACTACACATACACACAAGCCGATTTCACCTTCTTATCTAATGCACCTATATGAACATTTAGCTA
62475616 GCTCAAACCTCACTCATCCACAATTACTTATTAAAGCATGAAGACAACAACCATTCCCTTCAAAT
391 GCTCAAACCTCACTCATCCACAATTACTTATTAAAGCATGAAGACAACAACCATTCCCTTCAAAT
62475681 TCTTCCATAGCCGATTACTCATATCACCACACAATTCAAAATTTTGACATGGGCTAAATAAGGGA
456 TCTTCCATAGCCGATTACTCATATCACCACACAATTCAAAATTTTGACATGGGCTAAATAAGGGA
62475746 CTTAGTAACTAACTTAAATTATGCTAAAATCTCAAAAACTAACATGAATTACTTACCTTAATTCC
521 CTTAGTAACTAACTTAAATTATGCTAAAATCTCAAAAACTAACATGAATTACTTACCTTAATTCC
62475811 AACTCAAAGGTGACCGAATGGCTATCTCCCCTTTTCTTCTTTAAGATTCGGCTAAGCTAAGGAAG
586 AACTCAAAGGTGACCGAATGGCTATCTCCCCTTTTCTTCTTTAAGATTCGGCTAAGCTAAGGAAG
62475876 AAGATGAACCAAAACATTTTGTTTTTCTTTTTATCATCTTTTCTTATTTTAATTAATTTTTATTT
651 AAGATGAACCAAAACATTTTGTTTTTCTTTTTATCATCTTTTCTTATTTTAATTAATTTTTATTT
62475941 CATAATTTAAGCCATTAACTATTATAATATTAATATATAATGCATATATTGCTTCTCGTCATCAT
716 CATAATTTAAGCCATTAACTATTATAATATTAATATATAATGCATATATTGCTTCTCGTCATCAT
62476006 TATGGTTTGCCACTACAAATTAAAGTGGAAAATTTGACATGCAAATCCACCTATTTTACACCATA
781 TATGGTTTGCCACTACAAATTAAAGTGGAAAATTTGACATGCAAATCCACCTATTTTACACCATA
62476071 AATTATTTGGCCACTTCAAATTAAC
846 AATTATTTGGCCACTTCAAATTAAC
62476096 CACCATTAACCTAGTATCAATTAACTAAGTACTTTAAAATTTACTTTAACTAAGTAACTTATCCA
1 CACCATTAACCTAGTATCAATTAACTAAGTACTTTAAAATTTACTTTAACTAAGTAACTTATCCA
62476161 GAAATATTAAGGGAAAATTTAACAAGCTTAACTAAGTAACTTATCCGAAAATATTAAGAGCAAAT
66 GAAATATTAAGGGAAAATTTAACAAGCTTAACTAAGTAACTTATCCGAAAATATTAAGAGCAAAT
62476226 TTAACAAGTTTTAAATTCAACTTATAATTTGAGCATAACTCATCAAGGCATCAACACTAATTTAT
131 TTAACAAGTTTTAAATTCAACTTATAATTTGAGCATAACTCATCAAGGCATCAACACTAATTTAT
62476291 TATCCAAACAACCATAGCTGAATACACATATTCTTTCATTCATTCTTAACAAAATTCTATCAAGC
196 TATCCAAACAACCATAGCTGAATACACATATTCTTTCATTCATTCTTAACAAAATTCTATCAAGC
62476356 TTAAATCTCCATTTCATCATTTTAAAATGCAACATTACTCAATGTTATCTAAATTCACATTCGGC
261 TTAAATCTCCATTTCATCATTTTAAAATGCAACATTACTCAATGTTATCTAAATTCACATTCGGC
62476421 AACTACACATACACACAAGCCGATTTCACCTTCTTATCTAATGCACCTATATGAACATTTAGCTA
326 AACTACACATACACACAAGCCGATTTCACCTTCTTATCTAATGCACCTATATGAACATTTAGCTA
62476486 GCTCAAACCTCACTCATCCACAATTACTTATTAAAGCATGAAGACAACAACCATTCCCTTCAAAT
391 GCTCAAACCTCACTCATCCACAATTACTTATTAAAGCATGAAGACAACAACCATTCCCTTCAAAT
62476551 TCTTCCATAGCCGATTACTCATATCACCACACAATTCAAAATTTTGACATGGGCTAAATAAGGGA
456 TCTTCCATAGCCGATTACTCATATCACCACACAATTCAAAATTTTGACATGGGCTAAATAAGGGA
62476616 CTTAGTAACTAACTTAAATTATGCTAAAATCTCAAAAACTAACATGAATTACTTACCTTAATTCC
521 CTTAGTAACTAACTTAAATTATGCTAAAATCTCAAAAACTAACATGAATTACTTACCTTAATTCC
62476681 AACTCAAAGGTGACCGAATGGCTATCTCCCCTTTTCTTCTTTAAGATTCGGCTAAGCTAAGGAAG
586 AACTCAAAGGTGACCGAATGGCTATCTCCCCTTTTCTTCTTTAAGATTCGGCTAAGCTAAGGAAG
62476746 AAGATGAACCAAAACATTTTGTTTTTCTTTTTATCATCTTTTCTTATTTTAATTAATTTTTATTT
651 AAGATGAACCAAAACATTTTGTTTTTCTTTTTATCATCTTTTCTTATTTTAATTAATTTTTATTT
62476811 CATAATTTAAGCCATTAACTATTATAATATTAATATATAATGCATATATTGCTTCTCGTCATCAT
716 CATAATTTAAGCCATTAACTATTATAATATTAATATATAATGCATATATTGCTTCTCGTCATCAT
62476876 TATGGTTTGCCACTACAAATTAAAGTGGAAAATTTGACATGCAAATCCACCTATTTTACACCATA
781 TATGGTTTGCCACTACAAATTAAAGTGGAAAATTTGACATGCAAATCCACCTATTTTACACCATA
62476941 AATTATTTGGCCACTTCAAATTAAC
846 AATTATTTGGCCACTTCAAATTAAC
62476966 C
1 C
62476967 TATCACATTT
Statistics
Matches: 871, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
870 871 1.00
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (870 bp):
CACCATTAACCTAGTATCAATTAACTAAGTACTTTAAAATTTACTTTAACTAAGTAACTTATCCA
GAAATATTAAGGGAAAATTTAACAAGCTTAACTAAGTAACTTATCCGAAAATATTAAGAGCAAAT
TTAACAAGTTTTAAATTCAACTTATAATTTGAGCATAACTCATCAAGGCATCAACACTAATTTAT
TATCCAAACAACCATAGCTGAATACACATATTCTTTCATTCATTCTTAACAAAATTCTATCAAGC
TTAAATCTCCATTTCATCATTTTAAAATGCAACATTACTCAATGTTATCTAAATTCACATTCGGC
AACTACACATACACACAAGCCGATTTCACCTTCTTATCTAATGCACCTATATGAACATTTAGCTA
GCTCAAACCTCACTCATCCACAATTACTTATTAAAGCATGAAGACAACAACCATTCCCTTCAAAT
TCTTCCATAGCCGATTACTCATATCACCACACAATTCAAAATTTTGACATGGGCTAAATAAGGGA
CTTAGTAACTAACTTAAATTATGCTAAAATCTCAAAAACTAACATGAATTACTTACCTTAATTCC
AACTCAAAGGTGACCGAATGGCTATCTCCCCTTTTCTTCTTTAAGATTCGGCTAAGCTAAGGAAG
AAGATGAACCAAAACATTTTGTTTTTCTTTTTATCATCTTTTCTTATTTTAATTAATTTTTATTT
CATAATTTAAGCCATTAACTATTATAATATTAATATATAATGCATATATTGCTTCTCGTCATCAT
TATGGTTTGCCACTACAAATTAAAGTGGAAAATTTGACATGCAAATCCACCTATTTTACACCATA
AATTATTTGGCCACTTCAAATTAAC
Found at i:62479697 original size:14 final size:14
Alignment explanation
Indices: 62479678--62479709 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
62479668 TCAAAATGTC
62479678 ATCTGATTCATTAA
1 ATCTGATTCATTAA
62479692 ATCTGATTCATTAA
1 ATCTGATTCATTAA
62479706 ATCT
1 ATCT
62479710 ATGAACACAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.34, C:0.16, G:0.06, T:0.44
Consensus pattern (14 bp):
ATCTGATTCATTAA
Found at i:62483014 original size:45 final size:44
Alignment explanation
Indices: 62482906--62483068 Score: 206
Period size: 45 Copynumber: 3.7 Consensus size: 44
62482896 CTGAATTCAT
* * *
62482906 TCACCGGCATT-TCGCCTGCTAGGCTCGAAGCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATAGT-ATC
* *
62482948 TCACCGGTATTATAGCGTGCTAGGCTCGAAAGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGCCCGAATAGTATC
* *
62482993 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGAATAGTATC
*
62483038 TCACCGGTATTATAGCCTGCTAGGCTCAAAG
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAG
62483069 GCATGAATAA
Statistics
Matches: 105, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
42 10 0.10
43 13 0.12
44 11 0.10
45 70 0.67
46 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATAGTATC
Found at i:62483940 original size:47 final size:47
Alignment explanation
Indices: 62483884--62483979 Score: 147
Period size: 47 Copynumber: 2.0 Consensus size: 47
62483874 AAAATTTTCT
* * *
62483884 TTAACTAAGTAACTTCTCCGGAAATAATAAGGGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGAAAATAATAAGAGCAAATTTAACAAGC
* *
62483931 TTAACTAAGTAACTTATTCGAAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGAAAATAATAAGAGCAAATTTAACAAGC
62483978 TT
1 TT
62483980 TAAATTCAAC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.44, C:0.15, G:0.12, T:0.29
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCGAAAATAATAAGAGCAAATTTAACAAGC
Found at i:62487345 original size:31 final size:31
Alignment explanation
Indices: 62487307--62487368 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
62487297 CGTGTAACCT
*
62487307 GACCATGTATCACACACGGCTAAGACACACG
1 GACCATGTATCACACACAGCTAAGACACACG
* *
62487338 GACCATGTATCACACACAGTTGAGACACACG
1 GACCATGTATCACACACAGCTAAGACACACG
62487369 CTTGTGTCTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.35, C:0.31, G:0.19, T:0.15
Consensus pattern (31 bp):
GACCATGTATCACACACAGCTAAGACACACG
Found at i:62498670 original size:17 final size:19
Alignment explanation
Indices: 62498628--62498673 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
62498618 ATAAAATTTT
*
62498628 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
62498647 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
62498665 AA-TATTATT
1 AATTATTATT
62498674 GTATGTATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 7 0.28
18 4 0.16
19 14 0.56
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:62499273 original size:18 final size:18
Alignment explanation
Indices: 62499252--62499308 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
62499242 TCTTTGACAA
*
62499252 TTCTTTTCTCTTCTTCTT
1 TTCTTCTCTCTTCTTCTT
* *
62499270 TTCTCCTCTCTTCATCTAT
1 TTCTTCTCTCTTCTTCT-T
*
62499289 TTCCTCT-TCTTCTTCTT
1 TTCTTCTCTCTTCTTCTT
62499306 TTC
1 TTC
62499309 CTCTATAGCC
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
17 4 0.12
18 22 0.69
19 6 0.19
ACGTcount: A:0.04, C:0.33, G:0.00, T:0.63
Consensus pattern (18 bp):
TTCTTCTCTCTTCTTCTT
Found at i:62500987 original size:40 final size:40
Alignment explanation
Indices: 62500889--62501151 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
62500879 TCCTCGTTCA
* * * ** *
62500889 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
62500928 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
62500968 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
62501008 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
62501048 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
62501088 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
62501128 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
62501152 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:62503084 original size:27 final size:26
Alignment explanation
Indices: 62503054--62503110 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
62503044 AATACCTTTA
* *
62503054 TAGGTGGAAAATTTACAAATTTACCCC
1 TAGGAGGAAAA-TTACAAATATACCCC
* **
62503081 TAGGAGTAAAATTACTGATATACCCC
1 TAGGAGGAAAATTACAAATATACCCC
62503107 TAGG
1 TAGG
62503111 GTTAAGGTTG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (26 bp):
TAGGAGGAAAATTACAAATATACCCC
Found at i:62522259 original size:152 final size:152
Alignment explanation
Indices: 62521983--62522291 Score: 593
Period size: 152 Copynumber: 2.0 Consensus size: 152
62521973 ACTTATGTGC
62521983 GACATTTTTGAAATGTGATAGGTCGAAGCATAAGGACCTATTAGTGCATGAAATAAAAAGGGGGG
1 GACATTTTTGAAATGTGATAGGTCGAAGCATAAGGACCTATTAGTGCATGAAATAAAAAGGGGGG
*
62522048 ACTTGCATGTCAAATTCCCCCCCTAATTAGTTGTGGCCGGCCATGACAAGCATGGTAGACCAAGT
66 ACTTGCATGTCAAATTCCCCCCCTAATTAGTAGTGGCCGGCCATGACAAGCATGGTAGACCAAGT
62522113 GTGATGGGCAAGACATGTCATA
131 GTGATGGGCAAGACATGTCATA
62522135 GACATTTTTGAAATGTGATAGGTCGAAGCATAAGGACCTATTAGTGCATGAAATAAAAAGGGGGG
1 GACATTTTTGAAATGTGATAGGTCGAAGCATAAGGACCTATTAGTGCATGAAATAAAAAGGGGGG
62522200 ACTTGCATGTCAAATT-CCCCCCTAAATTAGTAGTGGCCGGCCATGACAAGCATGGTAGACCAAG
66 ACTTGCATGTCAAATTCCCCCCCT-AATTAGTAGTGGCCGGCCATGACAAGCATGGTAGACCAAG
62522264 TGTGATGGGCAAGACATGTCATA
130 TGTGATGGGCAAGACATGTCATA
62522287 GACAT
1 GACAT
62522292 GTTGTGTTGG
Statistics
Matches: 155, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
151 7 0.05
152 148 0.95
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.24
Consensus pattern (152 bp):
GACATTTTTGAAATGTGATAGGTCGAAGCATAAGGACCTATTAGTGCATGAAATAAAAAGGGGGG
ACTTGCATGTCAAATTCCCCCCCTAATTAGTAGTGGCCGGCCATGACAAGCATGGTAGACCAAGT
GTGATGGGCAAGACATGTCATA
Found at i:62523694 original size:79 final size:81
Alignment explanation
Indices: 62523558--62523742 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
62523548 TTGAATGATG
*
62523558 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
62523622 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
62523637 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
62523699 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
62523717 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62523743 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:62523756 original size:40 final size:40
Alignment explanation
Indices: 62523559--62523742 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
62523549 TGAATGATGT
* * * *
62523559 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
62523599 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
62523639 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
62523677 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
62523718 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
62523743 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:62523764 original size:79 final size:79
Alignment explanation
Indices: 62523559--62523775 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
62523549 TGAATGATGT
** * * * **
62523559 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
62523622 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
62523639 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
62523704 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
62523718 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
62523776 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:62527873 original size:30 final size:30
Alignment explanation
Indices: 62527816--62527876 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
62527806 TTCCCGAGCC
*
62527816 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGAAAAAGTT
* * * *
62527846 TAGGGGCAAAATTTTAATTTTGAAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGAAAAAGTT
62527876 T
1 T
62527877 GAGTTAAGGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.05, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGAAAAAGTT
Found at i:62532487 original size:40 final size:40
Alignment explanation
Indices: 62532443--62532704 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
62532433 GCTCCTCGTT
* *
62532443 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
62532483 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
62532523 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
62532562 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
62532601 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
62532640 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
62532681 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62532705 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:62537064 original size:40 final size:40
Alignment explanation
Indices: 62537020--62537281 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
62537010 GCTCCTCGTT
* *
62537020 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
62537060 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
62537100 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
62537139 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
62537178 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
62537217 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
62537258 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62537282 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:62545582 original size:43 final size:42
Alignment explanation
Indices: 62545528--62545641 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 42
62545518 TGTGATTGCA
*
62545528 TGTAAGA-CATGTCTGGGACATTGGCATTGTATTAA-GATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCG--TTAACGATTTCG
** * *
62545570 TGTAAGACCATGTCTAAGACATTAGCATCGTTAATCGGTTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTAA-CGATTTCG
* *
62545613 TGTAAGACCCTGTCTGGGACAGTGGCATC
1 TGTAAGACCATGTCTGGGACATTGGCATC
62545642 CATATGTAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
41 4 0.07
42 7 0.12
43 48 0.81
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTTAACGATTTCG
Found at i:62560867 original size:28 final size:29
Alignment explanation
Indices: 62560803--62560868 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 29
62560793 TTTTCATTTA
* * *
62560803 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAAATTAACCCCTCAATTGACACT
* *
62560832 TTTCTCAAATTAATCCCT-AATTGACATT
1 TTTCTCAAATTAACCCCTCAATTGACACT
*
62560860 TTTGTCAAA
1 TTTCTCAAA
62560869 AATCACTTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.32, C:0.24, G:0.03, T:0.41
Consensus pattern (29 bp):
TTTCTCAAATTAACCCCTCAATTGACACT
Found at i:62562652 original size:40 final size:40
Alignment explanation
Indices: 62562597--62562676 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
62562587 TTATTCAACC
* * *
62562597 TAAAATACATGGAAACTCTAGGAGAGAGAGAAGGAACTTT
1 TAAAATACATGGAAACCCTAGGAGAGAGAAAAGAAACTTT
62562637 TAAAATACATGGAAACCCTAGGAGAGAGAAAAGAAACTTT
1 TAAAATACATGGAAACCCTAGGAGAGAGAAAAGAAACTTT
62562677 CATGGCTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.47, C:0.11, G:0.23, T:0.19
Consensus pattern (40 bp):
TAAAATACATGGAAACCCTAGGAGAGAGAAAAGAAACTTT
Found at i:62566907 original size:28 final size:28
Alignment explanation
Indices: 62566841--62566968 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
62566831 CATGAGATTG
* * **
62566841 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
62566870 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
62566898 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
62566927 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
62566955 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
62566969 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:62566930 original size:57 final size:57
Alignment explanation
Indices: 62566841--62566968 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
62566831 CATGAGATTG
*
62566841 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
62566898 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
62566955 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
62566969 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:62570342 original size:41 final size:42
Alignment explanation
Indices: 62570283--62570658 Score: 273
Period size: 41 Copynumber: 8.8 Consensus size: 42
62570273 ATGCTATCTC
* *
62570283 ATATCGATGCCACTGTCCCAAACAGGGTCTTATACAAATCAA
1 ATATCGATGCCAATGTCCCAGACAGGGTCTTATACAAATCAA
* * * *
62570325 ATAT-GATGCCAATGTCCCAGACATGGTCTTACACGTAACCACA
1 ATATCGATGCCAATGTCCCAGACAGGGTCTTATAC-AAATCA-A
* * * * **
62570368 TATATCGATGCCAACGTCCCAGA-TGTGGTCTTACATGC-TATCTC
1 -ATATCGATGCCAATGTCCCAGACAG-GGTCTT--ATACAAATCAA
* *
62570412 ATATCGATGCCACTGTCCCAAACAGGGTCTTATACAAATCAA
1 ATATCGATGCCAATGTCCCAGACAGGGTCTTATACAAATCAA
* * * *
62570454 ATAT-GATGCCAATGTCCCAGACATGGTCTTACACGTAACCACA
1 ATATCGATGCCAATGTCCCAGACAGGGTCTTATAC-AAATCA-A
* * * * **
62570497 TATATCGATGCCAACGTCCCAGA-TGTGGTCTTACATGC-TATCTC
1 -ATATCGATGCCAATGTCCCAGACAG-GGTCTT--ATACAAATCAA
* *
62570541 ATATCGATGCCACTGTCCCAAACAGGGTCTTATACAAATCAA
1 ATATCGATGCCAATGTCCCAGACAGGGTCTTATACAAATCAA
* * * *
62570583 ATAT-GATGCCAATGTCCCAGACATGGTCTTACACGTAACCACA
1 ATATCGATGCCAATGTCCCAGACAGGGTCTTATAC-AAATCA-A
*
62570626 TATATCGATGCCAACGTCCCAGAC-GTGGTCTTA
1 -ATATCGATGCCAATGTCCCAGACAG-GGTCTTA
62570659 CACGAGAACA
Statistics
Matches: 257, Mismatches: 54, Indels: 43
0.73 0.15 0.12
Matches are distributed among these distances:
41 84 0.33
42 30 0.12
43 53 0.21
44 14 0.05
45 72 0.28
47 4 0.02
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (42 bp):
ATATCGATGCCAATGTCCCAGACAGGGTCTTATACAAATCAA
Found at i:62570387 original size:45 final size:44
Alignment explanation
Indices: 62570246--62570662 Score: 348
Period size: 45 Copynumber: 9.7 Consensus size: 44
62570236 ATATCATACA
** * *
62570246 ATGCCAACGTCCCAGATGTGGTCTTACATGCT-ATCTC-ATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-TAATCACAATATCG
* * * *
62570289 ATGCC-ACTGTCCCAAACAGGGTCTTATAC-AAATCA-AATAT-G
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCACAATATCG
* *
62570330 ATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACA-ATATCG
** * *
62570375 ATGCCAACGTCCCAGATGTGGTCTTACATGCT-ATCTC-ATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-TAATCACAATATCG
* * * *
62570418 ATGCC-ACTGTCCCAAACAGGGTCTTATAC-AAATCA-AATAT-G
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCACAATATCG
* *
62570459 ATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACA-ATATCG
** * *
62570504 ATGCCAACGTCCCAGATGTGGTCTTACATGCT-ATCTC-ATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-TAATCACAATATCG
* * * *
62570547 ATGCC-ACTGTCCCAAACAGGGTCTTATAC-AAATCA-AATAT-G
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCACAATATCG
* *
62570588 ATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACA-ATATCG
*
62570633 ATGCCAACGTCCCAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACATGGTCTTACACG
62570663 AGAACACATA
Statistics
Matches: 292, Mismatches: 56, Indels: 50
0.73 0.14 0.13
Matches are distributed among these distances:
41 72 0.25
42 42 0.14
43 75 0.26
44 12 0.04
45 89 0.30
46 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACAATATCG
Found at i:62570481 original size:84 final size:87
Alignment explanation
Indices: 62570325--62570660 Score: 253
Period size: 84 Copynumber: 3.9 Consensus size: 87
62570315 TACAAATCAA
* * *
62570325 ATATGATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCGATGCCAACGTCCCAG
1 ATATGATGCCAATGTCCCAAACAGGGTCTTACACGAAACCACATATATCGATGCCAACGTCCCAG
**
62570390 ATGTGGTCTTACATGCTATCTC
66 ACATGGTCTTACATGCTATCTC
* * * *
62570412 ATATCGATGCCACTGTCCCAAACAGGGTCTTATAC-AAATCA-A-ATAT-GATGCCAATGTCCCA
1 ATAT-GATGCCAATGTCCCAAACAGGGTCTTACACGAAACCACATATATCGATGCCAACGTCCCA
* * *
62570473 GACATGGTCTTACACG-TAACCAC
65 GACATGGTCTTACATGCT-ATCTC
* * * * ** * *
62570496 ATATATCGATGCCAACGTCCCAGA-TGTGGTCTTACATGCTATCTC--ATATCGATGCC-ACTGT
1 --ATAT-GATGCCAATGTCCCAAACAG-GGTCTTACACGAAACCACATATATCGATGCCAAC-GT
* * * * **
62570557 CCCAAACAGGGTCTT--ATACAAATCAA
61 CCCAGACATGGTCTTACATGC-TATCTC
* * *
62570583 ATATGATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCGATGCCAACGTCCCAG
1 ATATGATGCCAATGTCCCAAACAGGGTCTTACACGAAACCACATATATCGATGCCAACGTCCCAG
*
62570648 ACGTGGTCTTACA
66 ACATGGTCTTACA
62570661 CGAGAACACA
Statistics
Matches: 192, Mismatches: 40, Indels: 33
0.72 0.15 0.12
Matches are distributed among these distances:
83 1 0.01
84 59 0.31
85 9 0.05
86 54 0.28
87 21 0.11
88 48 0.25
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (87 bp):
ATATGATGCCAATGTCCCAAACAGGGTCTTACACGAAACCACATATATCGATGCCAACGTCCCAG
ACATGGTCTTACATGCTATCTC
Found at i:62570673 original size:129 final size:129
Alignment explanation
Indices: 62570246--62570660 Score: 821
Period size: 129 Copynumber: 3.2 Consensus size: 129
62570236 ATATCATACA
62570246 ATGCCAACGTCCCAGATGTGGTCTTACATGCTATCTCATATCGATGCCACTGTCCCAAACAGGGT
1 ATGCCAACGTCCCAGATGTGGTCTTACATGCTATCTCATATCGATGCCACTGTCCCAAACAGGGT
62570311 CTTATACAAATCAAATATGATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
66 CTTATACAAATCAAATATGATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
62570375 ATGCCAACGTCCCAGATGTGGTCTTACATGCTATCTCATATCGATGCCACTGTCCCAAACAGGGT
1 ATGCCAACGTCCCAGATGTGGTCTTACATGCTATCTCATATCGATGCCACTGTCCCAAACAGGGT
62570440 CTTATACAAATCAAATATGATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
66 CTTATACAAATCAAATATGATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
62570504 ATGCCAACGTCCCAGATGTGGTCTTACATGCTATCTCATATCGATGCCACTGTCCCAAACAGGGT
1 ATGCCAACGTCCCAGATGTGGTCTTACATGCTATCTCATATCGATGCCACTGTCCCAAACAGGGT
62570569 CTTATACAAATCAAATATGATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
66 CTTATACAAATCAAATATGATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
*
62570633 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGATGTGGTCTTACA
62570661 CGAGAACACA
Statistics
Matches: 285, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
129 285 1.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (129 bp):
ATGCCAACGTCCCAGATGTGGTCTTACATGCTATCTCATATCGATGCCACTGTCCCAAACAGGGT
CTTATACAAATCAAATATGATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
Found at i:62576609 original size:46 final size:46
Alignment explanation
Indices: 62576559--62576730 Score: 317
Period size: 46 Copynumber: 3.7 Consensus size: 46
62576549 TGGTTGAGCA
62576559 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
62576605 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
62576651 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
62576697 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
62576731 GGGGCGGGTT
Statistics
Matches: 123, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 123 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:62583126 original size:18 final size:18
Alignment explanation
Indices: 62583103--62583139 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
62583093 ATGATTATGG
*
62583103 ATGGGATAATTCGTTGAA
1 ATGGGATAATTAGTTGAA
*
62583121 ATGGGATTATTAGTTGAA
1 ATGGGATAATTAGTTGAA
62583139 A
1 A
62583140 AAAGATGCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.35, C:0.03, G:0.27, T:0.35
Consensus pattern (18 bp):
ATGGGATAATTAGTTGAA
Found at i:62587166 original size:10 final size:10
Alignment explanation
Indices: 62587147--62587178 Score: 50
Period size: 9 Copynumber: 3.4 Consensus size: 10
62587137 ATGGAAGGGG
62587147 GAAA-AAAAA
1 GAAATAAAAA
62587156 GAAATAAAAA
1 GAAATAAAAA
62587166 GAAAT-AAAA
1 GAAATAAAAA
62587175 GAAA
1 GAAA
62587179 ATGAAAAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 12 0.55
10 10 0.45
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.06
Consensus pattern (10 bp):
GAAATAAAAA
Found at i:62592276 original size:29 final size:29
Alignment explanation
Indices: 62592230--62592285 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
62592220 TAAAATACTT
62592230 AAAAATATAAAAGGAATAAATA-AATACA
1 AAAAATATAAAAGGAATAAATACAATACA
**
62592258 AAAAATATAAAACTTAATAAATACAATA
1 AAAAATATAAAA-GGAATAAATACAATA
62592286 TGGAGGCTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 12 0.50
29 8 0.33
30 4 0.17
ACGTcount: A:0.70, C:0.05, G:0.04, T:0.21
Consensus pattern (29 bp):
AAAAATATAAAAGGAATAAATACAATACA
Found at i:62594538 original size:57 final size:57
Alignment explanation
Indices: 62594420--62594538 Score: 139
Period size: 57 Copynumber: 2.1 Consensus size: 57
62594410 GTTAGGTCAA
* * * * * * * *
62594420 ATCTTGTCTTTTTAATCCCTTGATACTTGTTTCCAGTTCTGCCCTTAATTTTTGCAT
1 ATCTTGCCTTCTTAATCCCTTGATACTTGCTGCCAGTTATGCCCTTAATCTTGGCAG
* * *
62594477 ATCTTGCCTTCTTAATCCCTTGATCCTTGCTGCCAGTTATGCCTTTGATCTTGGCAG
1 ATCTTGCCTTCTTAATCCCTTGATACTTGCTGCCAGTTATGCCCTTAATCTTGGCAG
62594534 ATCTT
1 ATCTT
62594539 TTGTTGTTTG
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.15, C:0.25, G:0.13, T:0.46
Consensus pattern (57 bp):
ATCTTGCCTTCTTAATCCCTTGATACTTGCTGCCAGTTATGCCCTTAATCTTGGCAG
Done.