Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 186 of 297
Found at i:62885943 original size:15 final size:17
Alignment explanation
Indices: 62885925--62885956 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
62885915 TAACATATTT
62885925 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
62885940 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
62885957 CAAGTGTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:62901953 original size:44 final size:40
Alignment explanation
Indices: 62901865--62901970 Score: 115
Period size: 44 Copynumber: 2.5 Consensus size: 40
62901855 TTTAATGCAC
62901865 TCACACACTTAGTGCCAATTAAGTAATCGAAGCTATAATAGTA
1 TCACACACTTAGTGCC-ATTAAGTAATCGAA-C-ATAATAGTA
62901908 TCACACACTTAGTGCCATTACAGTAAATCGAA-ATAATATGGGTA
1 TCACACACTTAGTGCCATTA-AGT-AATCGAACATAATA---GTA
* *
62901952 TCACCCACATAGTGCCATT
1 TCACACACTTAGTGCCATT
62901971 TATTCAGCCA
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
41 6 0.11
42 4 0.07
43 19 0.34
44 27 0.48
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (40 bp):
TCACACACTTAGTGCCATTAAGTAATCGAACATAATAGTA
Found at i:62913783 original size:34 final size:35
Alignment explanation
Indices: 62913738--62913826 Score: 89
Period size: 34 Copynumber: 2.6 Consensus size: 35
62913728 TATAGTGTTG
*
62913738 AACAGTCTGGG-CTTAAGCTCACATTA-G-TAGCAAT
1 AACAGTGTGGGCCTTAAGC-C-CATTACGATAGCAAT
* *
62913772 AACAGTGTGGGCCTT-AGCCCATTACGATAGTATT
1 AACAGTGTGGGCCTTAAGCCCATTACGATAGCAAT
*
62913806 AACAGTGTGGGTCTT-AGCCCA
1 AACAGTGTGGGCCTTAAGCCCA
62913827 ACTCAGTACA
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
32 5 0.10
33 2 0.04
34 38 0.79
35 3 0.06
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (35 bp):
AACAGTGTGGGCCTTAAGCCCATTACGATAGCAAT
Found at i:62928198 original size:19 final size:19
Alignment explanation
Indices: 62928153--62928212 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
62928143 AAAAAACCCT
62928153 AAACCCTACTTAAAAAAAC
1 AAACCCTACTTAAAAAAAC
* *
62928172 CAATCCTACTT-AAAAAAC
1 AAACCCTACTTAAAAAAAC
*
62928190 AAAACCCTAACCCTAAAAAAAC
1 -AAACCCT-A-CTTAAAAAAAC
62928212 A
1 A
62928213 CAAAGAAAAC
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
18 7 0.22
19 14 0.44
20 1 0.03
21 3 0.09
22 7 0.22
ACGTcount: A:0.57, C:0.28, G:0.00, T:0.15
Consensus pattern (19 bp):
AAACCCTACTTAAAAAAAC
Found at i:62934341 original size:21 final size:20
Alignment explanation
Indices: 62934312--62934350 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
62934302 TAGTAAGTTA
62934312 AGTTAGT-AAATCAATAATTT
1 AGTTAGTAAAAT-AATAATTT
62934332 AGTTAAGTAAAATAATAAT
1 AGTT-AGTAAAATAATAAT
62934351 ATGGTATCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.24
21 9 0.53
22 4 0.24
ACGTcount: A:0.51, C:0.03, G:0.10, T:0.36
Consensus pattern (20 bp):
AGTTAGTAAAATAATAATTT
Found at i:62956653 original size:44 final size:44
Alignment explanation
Indices: 62956575--62956671 Score: 105
Period size: 44 Copynumber: 2.2 Consensus size: 44
62956565 TCCAATATGT
* * *
62956575 GATTTCGTGTAAGACCACATCTGGAACGTTGGCATTG-ATTTGA
1 GATTTCGTGTAAGACCACATCTGGAACATCGGCATCGTATTTGA
62956618 GATTTACGTGTAAGACCATC-TCTTGG-ACATCGGCATCGTATTT--
1 GATTT-CGTGTAAGACCA-CATC-TGGAACATCGGCATCGTATTTGA
62956661 GATTTCGTGTA
1 GATTTCGTGTA
62956672 CGACTTTGTC
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
42 6 0.13
43 10 0.21
44 23 0.49
45 8 0.17
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (44 bp):
GATTTCGTGTAAGACCACATCTGGAACATCGGCATCGTATTTGA
Found at i:62956671 original size:42 final size:41
Alignment explanation
Indices: 62956574--62956718 Score: 116
Period size: 43 Copynumber: 3.4 Consensus size: 41
62956564 TTCCAATATG
*
62956574 TGATTTCGTGTAAGACCA-CATC-TGGAACGTTGGCATTG-ATT
1 TGATTTCGTGTAAGACCATC-TCTTGG-AC-ATGGCATTGTATT
*
62956615 TGAGATTTACGTGTAAGACCATCTCTTGGACATCGGCATCGTATT
1 T--GATTT-CGTGTAAGACCATCTCTTGGACAT-GGCATTGTATT
* ** * *
62956660 TGATTTCGTGTACGACTTTGTCTGGGACAGTGGCATTGATATT
1 TGATTTCGTGTAAGACCATCTCTTGGACA-TGGCATTG-TATT
*
62956703 TGATTTCATGTAAGAC
1 TGATTTCGTGTAAGAC
62956719 TACGTCTAGG
Statistics
Matches: 85, Mismatches: 10, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
41 1 0.01
42 24 0.28
43 30 0.35
44 22 0.26
45 8 0.09
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.36
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCATCTCTTGGACATGGCATTGTATT
Found at i:62958834 original size:43 final size:43
Alignment explanation
Indices: 62958772--62959200 Score: 416
Period size: 43 Copynumber: 10.0 Consensus size: 43
62958762 TAGGATTTTT
* *
62958772 GATATGTG-TTCTCGTGTAAGACCACGTCTGGGACGTTGGCATC
1 GATATGTGATT-TCGAGTAAGACCATGTCTGGGACGTTGGCATC
*
62958815 GATATGTGATTTCGAGTAAGACCATGTCTGGGACATTGGCATC
1 GATATGTGATTTCGAGTAAGACCATGTCTGGGACGTTGGCATC
* * *
62958858 G-TAATTGTGA-TTCGTGTAAGACCTTGTCTGGGTCAG-TGGCATC
1 GAT-A-TGTGATTTCGAGTAAGACCATGTCTGGGAC-GTTGGCATC
** * *
62958901 GGCATGTGATTAC-ATGTAAGACCACGTCTGGGACGTTGGCATC
1 GATATGTGATTTCGA-GTAAGACCATGTCTGGGACGTTGGCATC
*
62958944 GATATGTGATTTCGAGTAAGACCATGTCTGGGACATTGGCATC
1 GATATGTGATTTCGAGTAAGACCATGTCTGGGACGTTGGCATC
* * *
62958987 G-TAATTGTGA-TTCGTGTAAGACCTTGTCTGGGTCAG-TGGCATC
1 GAT-A-TGTGATTTCGAGTAAGACCATGTCTGGGAC-GTTGGCATC
** * *
62959030 GGCATGTGATTAC-ATGTAAGACCACGTCTGGGACGTTGGCATC
1 GATATGTGATTTCGA-GTAAGACCATGTCTGGGACGTTGGCATC
*
62959073 GATATGTGATTTCGAGTAAGACCATGTCTGGGACATTGGCATC
1 GATATGTGATTTCGAGTAAGACCATGTCTGGGACGTTGGCATC
* * *
62959116 G-TAATTGTGA-TTCGTGTAAGACCTTGTCTGGGTCAG-TGGCATC
1 GAT-A-TGTGATTTCGAGTAAGACCATGTCTGGGAC-GTTGGCATC
** * *
62959159 GGCATGTGATTAC-ATGTAAGACCACGTCTGGGACGTTGGCAT
1 GATATGTGATTTCGA-GTAAGACCATGTCTGGGACGTTGGCAT
62959201 TGTACGATAT
Statistics
Matches: 319, Mismatches: 43, Indels: 48
0.78 0.10 0.12
Matches are distributed among these distances:
42 21 0.07
43 279 0.87
44 19 0.06
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (43 bp):
GATATGTGATTTCGAGTAAGACCATGTCTGGGACGTTGGCATC
Found at i:62958887 original size:86 final size:86
Alignment explanation
Indices: 62958783--62959200 Score: 467
Period size: 86 Copynumber: 4.9 Consensus size: 86
62958773 ATATGTGTTC
*
62958783 TCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTTCGAGTAAGACCATGTCTGGGA
1 TCGTGTAAGACCATGTCTGGGACGTTGGCATCGATATGTGATTTCGAGTAAGACCATGTCTGGGA
62958848 CATTGGCATCGTAATTGTGAT
66 CATTGGCATCGTAATTGTGAT
* * ** * *
62958869 TCGTGTAAGACCTTGTCTGGGTCAG-TGGCATCGGCATGTGATTAC-ATGTAAGACCACGTCTGG
1 TCGTGTAAGACCATGTCTGGGAC-GTTGGCATCGATATGTGATTTCGA-GTAAGACCATGTCTGG
*
62958932 GACGTTGGCATCG--ATATGTGATT
64 GACATTGGCATCGTAAT-TGTGA-T
* * * *
62958955 TCGAGTAAGACCATGTCTGGGACATTGGCATCG-TAATTGTGA-TTCGTGTAAGACCTTGTCTGG
1 TCGTGTAAGACCATGTCTGGGACGTTGGCATCGAT-A-TGTGATTTCGAGTAAGACCATGTCTGG
* * **
62959018 GTCAGTGGCATCGGCA-TGTGAT
64 GACATTGGCATCGTAATTGTGAT
* *
62959040 TACATGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTTCGAGTAAGACCATGTCTGGG
1 T-CGTGTAAGACCATGTCTGGGACGTTGGCATCGATATGTGATTTCGAGTAAGACCATGTCTGGG
62959105 ACATTGGCATCGTAATTGTGAT
65 ACATTGGCATCGTAATTGTGAT
* * ** * *
62959127 TCGTGTAAGACCTTGTCTGGGTCAG-TGGCATCGGCATGTGATTAC-ATGTAAGACCACGTCTGG
1 TCGTGTAAGACCATGTCTGGGAC-GTTGGCATCGATATGTGATTTCGA-GTAAGACCATGTCTGG
*
62959190 GACGTTGGCAT
64 GACATTGGCAT
62959201 TGTACGATAT
Statistics
Matches: 277, Mismatches: 39, Indels: 32
0.80 0.11 0.09
Matches are distributed among these distances:
84 2 0.01
85 14 0.05
86 245 0.88
87 15 0.05
88 1 0.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (86 bp):
TCGTGTAAGACCATGTCTGGGACGTTGGCATCGATATGTGATTTCGAGTAAGACCATGTCTGGGA
CATTGGCATCGTAATTGTGAT
Found at i:62959005 original size:129 final size:129
Alignment explanation
Indices: 62958786--62959200 Score: 830
Period size: 129 Copynumber: 3.2 Consensus size: 129
62958776 TGTGTTCTCG
62958786 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTTCGAGTAAGACCATGTCTGGGACAT
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTTCGAGTAAGACCATGTCTGGGACAT
62958851 TGGCATCGTAATTGTGATTCGTGTAAGACCTTGTCTGGGTCAGTGGCATCGGCATGTGATTACA
66 TGGCATCGTAATTGTGATTCGTGTAAGACCTTGTCTGGGTCAGTGGCATCGGCATGTGATTACA
62958915 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTTCGAGTAAGACCATGTCTGGGACAT
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTTCGAGTAAGACCATGTCTGGGACAT
62958980 TGGCATCGTAATTGTGATTCGTGTAAGACCTTGTCTGGGTCAGTGGCATCGGCATGTGATTACA
66 TGGCATCGTAATTGTGATTCGTGTAAGACCTTGTCTGGGTCAGTGGCATCGGCATGTGATTACA
62959044 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTTCGAGTAAGACCATGTCTGGGACAT
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTTCGAGTAAGACCATGTCTGGGACAT
62959109 TGGCATCGTAATTGTGATTCGTGTAAGACCTTGTCTGGGTCAGTGGCATCGGCATGTGATTACA
66 TGGCATCGTAATTGTGATTCGTGTAAGACCTTGTCTGGGTCAGTGGCATCGGCATGTGATTACA
62959173 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
62959201 TGTACGATAT
Statistics
Matches: 286, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
129 286 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (129 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTTCGAGTAAGACCATGTCTGGGACAT
TGGCATCGTAATTGTGATTCGTGTAAGACCTTGTCTGGGTCAGTGGCATCGGCATGTGATTACA
Found at i:62968082 original size:43 final size:43
Alignment explanation
Indices: 62968034--62968183 Score: 153
Period size: 43 Copynumber: 3.5 Consensus size: 43
62968024 ATTATCGAGA
*
62968034 TGTGATTACATGTAAGACTATGTCTGAGACATTGACATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGAGACATTGACATTGTAT
*
62968077 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATTGT-T
1 TGTGATTACATGTAAGACCATGTCTGAGACATTGACATTGTAT
* * * * * * *
62968119 ATATGATTTCGTATAAGACCTTGTCT-AGGACAGTGGCATTG-AT
1 -TGTGATTACATGTAAGACCATGTCTGA-GACATTGACATTGTAT
* *
62968162 ATATGATAACATGTAAGACCAT
1 -TGTGATTACATGTAAGACCAT
62968184 ATCCGAGATA
Statistics
Matches: 89, Mismatches: 15, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 1 0.01
43 88 0.99
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.35
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGAGACATTGACATTGTAT
Found at i:62974224 original size:17 final size:17
Alignment explanation
Indices: 62974204--62974237 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
62974194 TGTTAGTAAA
*
62974204 GGTTAAAATGGTAAAAT
1 GGTTAAAATGATAAAAT
62974221 GGTTAAAATGATAAAAT
1 GGTTAAAATGATAAAAT
62974238 AATTAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (17 bp):
GGTTAAAATGATAAAAT
Found at i:62974243 original size:17 final size:17
Alignment explanation
Indices: 62974206--62974246 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
62974196 TTAGTAAAGG
* **
62974206 TTAAAATGGTAAAATGG
1 TTAAAATGATAAAATAA
62974223 TTAAAATGATAAAATAA
1 TTAAAATGATAAAATAA
62974240 TTAAAAT
1 TTAAAAT
62974247 AAAGCCAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.32
Consensus pattern (17 bp):
TTAAAATGATAAAATAA
Found at i:62978456 original size:26 final size:26
Alignment explanation
Indices: 62978417--62978468 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
62978407 GGCTTACAAG
**
62978417 ACAGCATATGAGACACCTTTAGGGAT
1 ACAGCATACAAGACACCTTTAGGGAT
62978443 ACAGCATACAAGACACCTTTAGGGAT
1 ACAGCATACAAGACACCTTTAGGGAT
62978469 GTCACCCTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (26 bp):
ACAGCATACAAGACACCTTTAGGGAT
Found at i:62985518 original size:69 final size:69
Alignment explanation
Indices: 62985248--62985510 Score: 490
Period size: 69 Copynumber: 3.8 Consensus size: 69
62985238 TAGTTTATTA
* * *
62985248 CTAATTAATTTGCTACTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
62985313 CTTAG
65 CTTAG
62985318 CTAATTAATATGCTGCTGTAATACTTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTAC
1 CTAATTAATATGCTGCTGTAATACTTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTAC
62985383 TTAG
66 TTAG
62985387 CTAATTAATATGCTGCTGTAATACTTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTAC
1 CTAATTAATATGCTGCTGTAATACTTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTAC
62985452 TTAG
66 TTAG
62985456 CTAATTAATATGCTGCTGTAATACTTAAATTATTGGCTGTCCAAATTAGGACAAA
1 CTAATTAATATGCTGCTGTAATACTTAAATTATTGGCTGTCCAAATTAGGACAAA
62985511 ATCATGGTGT
Statistics
Matches: 190, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
69 168 0.88
70 22 0.12
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.37
Consensus pattern (69 bp):
CTAATTAATATGCTGCTGTAATACTTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTAC
TTAG
Found at i:62986388 original size:40 final size:39
Alignment explanation
Indices: 62986297--62986685 Score: 487
Period size: 40 Copynumber: 9.8 Consensus size: 39
62986287 TAAGGTCCGT
* **
62986297 AGGCTTCGTGCTGGAATTGTATCCGGACTT-AAGGTCCGC
1 AGGCTT-GTGCTGGAATTGTATCCGGGCTTAAAGACCCGC
*
62986336 AAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGC
1 AGGCTT-GTGCTGGAATTGTATCCGGGCTTAAAGACCCGC
* *
62986376 AGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCCGC
1 AGGCT-TGTGCTGGAATTGTATCCGGGCTTAAAGACCCGC
* **
62986416 AGGCGTTGTGCTGGAATTGTATCCGGACTT-AAGGTCCGC
1 AGGC-TTGTGCTGGAATTGTATCCGGGCTTAAAGACCCGC
*
62986455 AAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGC
1 AGGCTT-GTGCTGGAATTGTATCCGGGCTTAAAGACCCGC
* *
62986495 AGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCCGC
1 AGGCT-TGTGCTGGAATTGTATCCGGGCTTAAAGACCCGC
* **
62986535 AGGCGTTGTGCTGGAATTGTATCCGGACTT-AAGGTCCGC
1 AGGC-TTGTGCTGGAATTGTATCCGGGCTTAAAGACCCGC
* *
62986574 AAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCAC
1 AGGCTT-GTGCTGGAATTGTATCCGGGCTTAAAGACCCGC
*
62986614 AGGCTTTGTGCTGGAATTGTATCTGGGCTTAAAGACCCGC
1 AGGC-TTGTGCTGGAATTGTATCCGGGCTTAAAGACCCGC
* *
62986654 AGACTTCGTGCTGGAATTGTATCCGGACTTAA
1 AGGCTT-GTGCTGGAATTGTATCCGGGCTTAA
62986686 GATCTGTAGG
Statistics
Matches: 304, Mismatches: 35, Indels: 21
0.84 0.10 0.06
Matches are distributed among these distances:
38 4 0.01
39 94 0.31
40 200 0.66
41 6 0.02
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
AGGCTTGTGCTGGAATTGTATCCGGGCTTAAAGACCCGC
Found at i:62986697 original size:79 final size:80
Alignment explanation
Indices: 62986277--62986706 Score: 486
Period size: 79 Copynumber: 5.4 Consensus size: 80
62986267 ATTTGATGTA
** * * **
62986277 TATCCGGACTT-AAGGTCCGTAGGCTTCGTGCTGGAATTGTATCCGGACTT-AAGGTCCGCA-AG
1 TATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGA-
62986339 CTTCGTGCTGGAATTG
65 CTTCGTGCTGGAATTG
* * * *
62986355 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTATATCCGGGCTTAAAGACCCGCAGG
1 TATCCGGACTTAAAGACCCGCAGGCT-TCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGA
62986419 CGTT-GTGCTGGAATTG
65 C-TTCGTGCTGGAATTG
** * *
62986435 TATCCGGACTT-AAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGC
1 TATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGAC
* *
62986499 TAT-ATGCTGGAATTA
66 T-TCGTGCTGGAATTG
* * **
62986514 TATCCGGGCTTAAAGACCCGCAGGCGTT-GTGCTGGAATTGTATCCGGACTT-AAGGTCCGCA-A
1 TATCCGGACTTAAAGACCCGCAGGC-TTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGA
62986576 GCTTCGTGCTGGAATTG
65 -CTTCGTGCTGGAATTG
* * * *
62986593 TATCCGGGCTTAAAGACCCACAGGCTTTGTGCTGGAATTGTATCTGGGCTTAAAGACCCGCAGAC
1 TATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGAC
62986658 TTCGTGCTGGAATTG
66 TTCGTGCTGGAATTG
* * *
62986673 TATCCGGACTT-AAGATCTGTAGGCTTCGTGCTGG
1 TATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGG
62986707 TACTATATTC
Statistics
Matches: 299, Mismatches: 39, Indels: 27
0.82 0.11 0.07
Matches are distributed among these distances:
78 15 0.05
79 181 0.61
80 98 0.33
81 5 0.02
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (80 bp):
TATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGAC
TTCGTGCTGGAATTG
Found at i:62986724 original size:119 final size:119
Alignment explanation
Indices: 62986304--62986706 Score: 700
Period size: 119 Copynumber: 3.4 Consensus size: 119
62986294 CGTAGGCTTC
62986304 GTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAA
1 GTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAA
62986369 GACCCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCGTT
66 GACCCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCGTT
62986423 GTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAA
1 GTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAA
62986488 GACCCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCGTT
66 GACCCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCGTT
62986542 GTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAA
1 GTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAA
* * * * * *
62986607 GACCCACAGGCTTTGTGCTGGAATTGTATCTGGGCTTAAAGACCCGCAGAC-TT
66 GACCCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCGTT
* * * *
62986660 CGTGCTGGAATTGTATCCGGACTTAAGATCTGTAGGCTTCGTGCTGG
1 -GTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGG
62986707 TACTATATTC
Statistics
Matches: 273, Mismatches: 10, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
118 2 0.01
119 271 0.99
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (119 bp):
GTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAA
GACCCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCGTT
Found at i:62986746 original size:39 final size:39
Alignment explanation
Indices: 62986677--62986753 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
62986667 GAATTGTATC
* *
62986677 CGGACTTAAGATCTGTAGGCTTCGTGCTGGTACTATATT
1 CGGACTTAAGATCCGTAGGCTTCGTACTGGTACTATATT
*
62986716 CGGACTTAAGGTCCGTAGGCTTCGTACTGGTACTATAT
1 CGGACTTAAGATCCGTAGGCTTCGTACTGGTACTATAT
62986754 CCGAGCTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (39 bp):
CGGACTTAAGATCCGTAGGCTTCGTACTGGTACTATATT
Found at i:62986763 original size:39 final size:39
Alignment explanation
Indices: 62986275--62986756 Score: 144
Period size: 40 Copynumber: 12.2 Consensus size: 39
62986265 ATATTTGATG
* * *
62986275 TATATCCGGACTTAAGGTCCGTAGGCTTCGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGTAGGCTTCGTACTGGTAC
* * * * * *
62986314 TGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGTAGGCTTCGTACTGGTAC
* * ** * * * * *
62986353 TGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAAT
1 TATATCCGGACTT-AAGGTCCGTAGGCT-TCGTACTGGTAC
* ** * * * *
62986393 TATATCCGGGCTTAAAGACCCGCAGGCGTT-GTGCTGGAAT
1 TATATCCGGACTT-AAGGTCCGTAGGC-TTCGTACTGGTAC
* * * * * *
62986433 TGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGTAGGCTTCGTACTGGTAC
* * ** * * * * *
62986472 TGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAAT
1 TATATCCGGACTT-AAGGTCCGTAGGCT-TCGTACTGGTAC
* ** * * * *
62986512 TATATCCGGGCTTAAAGACCCGCAGGCGTT-GTGCTGGAAT
1 TATATCCGGACTT-AAGGTCCGTAGGC-TTCGTACTGGTAC
* * * * * *
62986552 TGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGTAGGCTTCGTACTGGTAC
* * ** ** * * * *
62986591 TGTATCCGGGCTTAAAGACCCACAGGCTTTGTGCTGGAAT
1 TATATCCGGACTT-AAGGTCCGTAGGCTTCGTACTGGTAC
* * * ** * * * * *
62986631 TGTATCTGGGCTTAAAGACCCGCAGACTTCGTGCTGGAAT
1 TATATCCGGACTT-AAGGTCCGTAGGCTTCGTACTGGTAC
* * * *
62986671 TGTATCCGGACTTAAGATCTGTAGGCTTCGTGCTGGTAC
1 TATATCCGGACTTAAGGTCCGTAGGCTTCGTACTGGTAC
*
62986710 TATATTCGGACTTAAGGTCCGTAGGCTTCGTACTGGTAC
1 TATATCCGGACTTAAGGTCCGTAGGCTTCGTACTGGTAC
62986749 TATATCCG
1 TATATCCG
62986757 AGCTTAAAGT
Statistics
Matches: 383, Mismatches: 51, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
38 4 0.01
39 173 0.45
40 202 0.53
41 4 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGTAGGCTTCGTACTGGTAC
Found at i:62990100 original size:40 final size:39
Alignment explanation
Indices: 62989980--62990125 Score: 136
Period size: 40 Copynumber: 3.7 Consensus size: 39
62989970 TTGAATGCTG
* *
62989980 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTG-ATAAA
** *
62990020 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGAT-ACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TGA-TAAA
* * *
62990060 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGATAAA
*
62990100 TCCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62990126 AACGAGGAGC
Statistics
Matches: 88, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
39 2 0.02
40 77 0.88
41 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGATAAA
Found at i:62991624 original size:195 final size:195
Alignment explanation
Indices: 62991284--62991635 Score: 605
Period size: 195 Copynumber: 1.8 Consensus size: 195
62991274 CTAATAAACT
*
62991284 GTACTAATTGGCCCGACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGTTTC
1 GTACTAATTGGCCCGACCAAAAATTCTAGAAAAAAATACATAGATGGGCAAATGAGTCTAGTTTC
* *
62991349 TGGGAAAAATCACGAAACTGATTTTTGAGTTACGAAACTCAAGATATGATTTTTAAAACGACTAG
66 AGGGAAAAATCACAAAACTGATTTTTGAGTTACGAAACTCAAGATATGATTTTTAAAACGACTAG
*
62991414 TACACAGATTGGGCAGTGTCTGGAAAATAAATTTTATAAGGGGTTAAAGTCAGCTAACACCTCGG
131 TACACAGACTGGGCAGTGTCTGGAAAATAAATTTTATAAGGGGTTAAAGTCAGCTAACACCTCGG
* *
62991479 GTACTAATTGGCCCGACCAAAAATTCTAGAAAAAAATACATAGGTGGGGAAATGAGTCTAGTTTC
1 GTACTAATTGGCCCGACCAAAAATTCTAGAAAAAAATACATAGATGGGCAAATGAGTCTAGTTTC
** * *
62991544 AGGGAAAAATCACAAAACTGATTTTTGAGTTGTGAAACTCAAGATATGATTTTTGAAGCGACTAG
66 AGGGAAAAATCACAAAACTGATTTTTGAGTTACGAAACTCAAGATATGATTTTTAAAACGACTAG
*
62991609 TACTCAGACTGGGCAGTGTCTGGAAAA
131 TACACAGACTGGGCAGTGTCTGGAAAA
62991636 ATTTTTCAAA
Statistics
Matches: 146, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
195 146 1.00
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (195 bp):
GTACTAATTGGCCCGACCAAAAATTCTAGAAAAAAATACATAGATGGGCAAATGAGTCTAGTTTC
AGGGAAAAATCACAAAACTGATTTTTGAGTTACGAAACTCAAGATATGATTTTTAAAACGACTAG
TACACAGACTGGGCAGTGTCTGGAAAATAAATTTTATAAGGGGTTAAAGTCAGCTAACACCTCGG
Found at i:62998080 original size:40 final size:39
Alignment explanation
Indices: 62998049--62998258 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
62998039 GGACTAAGAT
* *
62998049 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
62998089 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
62998129 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
62998169 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
62998209 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
62998248 CCGAAGGCATT
1 CCGAAGGCATT
62998259 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:62998212 original size:120 final size:120
Alignment explanation
Indices: 62997996--62998258 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
62997986 TTGAATGCTG
* *
62997996 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
62998060 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
62998116 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
62998179 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
62998235 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
62998259 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:62998278 original size:79 final size:80
Alignment explanation
Indices: 62997997--62998293 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
62997987 TGAATGCTGT
* ** * * * **
62997997 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
62998060 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
62998077 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
62998141 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
62998157 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
62998221 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
62998236 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
62998294 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:63001311 original size:47 final size:46
Alignment explanation
Indices: 63001209--63001331 Score: 138
Period size: 47 Copynumber: 2.6 Consensus size: 46
63001199 GATAAGTACC
* * ** * *
63001209 TATACCATGGCCGTAGCCAAATCAAGGTAACTTATCTCGGAGTACC
1 TATACCATGGCCGTAGCCAAATCAAGGTAACTCATCACAAAATACA
* *
63001255 TATATCATGGCCTGTAGCCAAATCAAGGTAACTCCTCACAAAATACA
1 TATACCATGGCC-GTAGCCAAATCAAGGTAACTCATCACAAAATACA
* *
63001302 TATACCATGGCCCATAGCCACATCAAGGTA
1 TATACCATGG-CCGTAGCCAAATCAAGGTA
63001332 TTTAATCGCA
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
46 11 0.17
47 51 0.80
48 2 0.03
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (46 bp):
TATACCATGGCCGTAGCCAAATCAAGGTAACTCATCACAAAATACA
Found at i:63004924 original size:40 final size:40
Alignment explanation
Indices: 63004880--63005163 Score: 373
Period size: 40 Copynumber: 7.2 Consensus size: 40
63004870 CGGATGATAA
* * *
63004880 CGAAGGCATTTATGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
* * *
63004920 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGTTAAGGT--
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAA-GTCC
* *
63004959 CGAAGGCATTTGTGCGAGTTACTATATCTGGGCTAAGTCT
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
63004999 CGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
63005039 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
63005079 CGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * *
63005119 CGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
63005158 CGAAGG
1 CGAAGG
63005164 TACTTGGTTT
Statistics
Matches: 225, Mismatches: 14, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
38 2 0.01
39 46 0.20
40 175 0.78
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:63005366 original size:67 final size:67
Alignment explanation
Indices: 63005233--63005366 Score: 196
Period size: 67 Copynumber: 2.0 Consensus size: 67
63005223 TCCCAACGAT
* * *
63005233 AAGGTATGTTTCATATATGCATTGAACTAATTGATTCCTTTTAAATAGTATTCGCTTAGTCGATT
1 AAGGTACGTTTCATATATGCATTGAACTAATTGATTCCTTTTAAATAGTATTCGCTCAGTCAATT
63005298 AA
66 AA
* * * * *
63005300 AAGGTACGTTTCATATATGCATTGGAGTAGTTGATTCCTTTTAAATATTATTCGCTCCGTCAATT
1 AAGGTACGTTTCATATATGCATTGAACTAATTGATTCCTTTTAAATAGTATTCGCTCAGTCAATT
63005365 AA
66 AA
63005367 TGAGCTTCCG
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
67 59 1.00
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (67 bp):
AAGGTACGTTTCATATATGCATTGAACTAATTGATTCCTTTTAAATAGTATTCGCTCAGTCAATT
AA
Found at i:63008590 original size:200 final size:200
Alignment explanation
Indices: 63008236--63008635 Score: 710
Period size: 200 Copynumber: 2.0 Consensus size: 200
63008226 ACCTTTTCCC
* *
63008236 ATTACGACTTGGATATCTCTCTGCACAGAGTTTCAATACTGATGCCGTTTGTTTCTATGGAAACT
1 ATTACGACTTGGATATCTCTCTGCACAGAGCTTCAATACTGATGCCGTTTATTTCTATGGAAACT
* *
63008301 AGACTCAGAGAGGAATCCATATATATATGGTATGACCCCTAATTAACTCTGGTCAATTTATAGTG
66 AGACTCAGAGAGGAATCCATACATATATAGTATGACCCCTAATTAACTCTGGTCAATTTATAGTG
* * *
63008366 AATTTCCAAAGGCGGAATAGGGAATCCAGAAACTGTTCTGGCCCTGTTCCACAAGAACCCGAATA
131 AATTTCCAAAGGCGGAACAGGGAATCCAGAAACTGTCCTGGCCCTGTCCCACAAGAACCCGAATA
63008431 TCTCT
196 TCTCT
63008436 ATTACGACTTGGATATCTCTCTGCACAGAGCTTCAATACTGATGCCGTTTATTTCTATGGAAACT
1 ATTACGACTTGGATATCTCTCTGCACAGAGCTTCAATACTGATGCCGTTTATTTCTATGGAAACT
* *
63008501 AGACTCAGAGAGGAATCCATACATATATAGTATGACTCCTAATTATCTCTGGTCAATTTATAGTG
66 AGACTCAGAGAGGAATCCATACATATATAGTATGACCCCTAATTAACTCTGGTCAATTTATAGTG
*
63008566 AATTTCCAAAGTCGGAACAGGGAATCCAGAAACTGTCCTGGCCCTGTCCCACAAGAACCCGAATA
131 AATTTCCAAAGGCGGAACAGGGAATCCAGAAACTGTCCTGGCCCTGTCCCACAAGAACCCGAATA
63008631 TCTCT
196 TCTCT
63008636 TACTGTACTG
Statistics
Matches: 190, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
200 190 1.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29
Consensus pattern (200 bp):
ATTACGACTTGGATATCTCTCTGCACAGAGCTTCAATACTGATGCCGTTTATTTCTATGGAAACT
AGACTCAGAGAGGAATCCATACATATATAGTATGACCCCTAATTAACTCTGGTCAATTTATAGTG
AATTTCCAAAGGCGGAACAGGGAATCCAGAAACTGTCCTGGCCCTGTCCCACAAGAACCCGAATA
TCTCT
Found at i:63009586 original size:39 final size:40
Alignment explanation
Indices: 63009541--63009765 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
63009531 GCTCCTCGTT
* * * *
63009541 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
63009581 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
63009620 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
63009660 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
63009700 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
63009741 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
63009766 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 20, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
39 39 0.25
40 105 0.66
41 15 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:63009774 original size:41 final size:41
Alignment explanation
Indices: 63009697--63009774 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
63009687 TTTGTATCTC
* * *
63009697 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
63009738 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
63009775 ATTAATAATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:63010263 original size:110 final size:110
Alignment explanation
Indices: 63010124--63010344 Score: 433
Period size: 110 Copynumber: 2.0 Consensus size: 110
63010114 AAAGTCTCAT
*
63010124 ACATGCAAAAATCATGCATCAACACAACATATTAGCTAATTTCTTTCCCCTTGGCCTAATATGCA
1 ACATGCAAAAATCATGCATCAACACAACATATTAGCTAATTTCTTTCCCCTTGGCCGAATATGCA
63010189 TGTCTATTTTTGGGGTCGATTTCAACACTTAATACACACATATAC
66 TGTCTATTTTTGGGGTCGATTTCAACACTTAATACACACATATAC
63010234 ACATGCAAAAATCATGCATCAACACAACATATTAGCTAATTTCTTTCCCCTTGGCCGAATATGCA
1 ACATGCAAAAATCATGCATCAACACAACATATTAGCTAATTTCTTTCCCCTTGGCCGAATATGCA
63010299 TGTCTATTTTTGGGGTCGATTTCAACACTTAATACACACATATAC
66 TGTCTATTTTTGGGGTCGATTTCAACACTTAATACACACATATAC
63010344 A
1 A
63010345 TACTAGTAAA
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
110 110 1.00
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (110 bp):
ACATGCAAAAATCATGCATCAACACAACATATTAGCTAATTTCTTTCCCCTTGGCCGAATATGCA
TGTCTATTTTTGGGGTCGATTTCAACACTTAATACACACATATAC
Found at i:63017639 original size:39 final size:40
Alignment explanation
Indices: 63017594--63017778 Score: 178
Period size: 40 Copynumber: 4.7 Consensus size: 40
63017584 GCTCCTCGTT
* * *
63017594 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
63017634 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
63017673 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * * * *
63017713 CAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAAC-TCGCA
* *
63017754 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
63017779 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 37 0.30
40 74 0.61
41 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:63017694 original size:40 final size:39
Alignment explanation
Indices: 63017561--63017778 Score: 165
Period size: 40 Copynumber: 5.5 Consensus size: 39
63017551 AAATCACGTA
* * **
63017561 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCG--CACAATG
* * * * *
63017600 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
* *
63017639 CCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * *
63017679 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * * * *
63017719 CCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTA-GCAAC-TCGCACAATG
*
63017759 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
63017779 CAGCATTCAA
Statistics
Matches: 143, Mismatches: 29, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
38 2 0.01
39 48 0.34
40 85 0.59
41 8 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
Found at i:63028982 original size:213 final size:213
Alignment explanation
Indices: 63028615--63029040 Score: 852
Period size: 213 Copynumber: 2.0 Consensus size: 213
63028605 GCCTAGTTCA
63028615 CGAGAACTTAAATATAGAATTAAATTCACATGCACCTATCTAGATTTAGTTCAATTTACCATGCC
1 CGAGAACTTAAATATAGAATTAAATTCACATGCACCTATCTAGATTTAGTTCAATTTACCATGCC
63028680 ATAATATGGCTTCAAAAACAAACACATATTATATGTATAAAACCAACCAAAATTAAACATATAAC
66 ATAATATGGCTTCAAAAACAAACACATATTATATGTATAAAACCAACCAAAATTAAACATATAAC
63028745 CTTGTTTACAATCAAACCACAAAATAAATATTATTTAGACACCCTAGGTACATGTCGACACAAAG
131 CTTGTTTACAATCAAACCACAAAATAAATATTATTTAGACACCCTAGGTACATGTCGACACAAAG
63028810 GATAAACATCACCACATT
196 GATAAACATCACCACATT
63028828 CGAGAACTTAAATATAGAATTAAATTCACATGCACCTATCTAGATTTAGTTCAATTTACCATGCC
1 CGAGAACTTAAATATAGAATTAAATTCACATGCACCTATCTAGATTTAGTTCAATTTACCATGCC
63028893 ATAATATGGCTTCAAAAACAAACACATATTATATGTATAAAACCAACCAAAATTAAACATATAAC
66 ATAATATGGCTTCAAAAACAAACACATATTATATGTATAAAACCAACCAAAATTAAACATATAAC
63028958 CTTGTTTACAATCAAACCACAAAATAAATATTATTTAGACACCCTAGGTACATGTCGACACAAAG
131 CTTGTTTACAATCAAACCACAAAATAAATATTATTTAGACACCCTAGGTACATGTCGACACAAAG
63029023 GATAAACATCACCACATT
196 GATAAACATCACCACATT
63029041 TGAGTTCGGG
Statistics
Matches: 213, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
213 213 1.00
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.27
Consensus pattern (213 bp):
CGAGAACTTAAATATAGAATTAAATTCACATGCACCTATCTAGATTTAGTTCAATTTACCATGCC
ATAATATGGCTTCAAAAACAAACACATATTATATGTATAAAACCAACCAAAATTAAACATATAAC
CTTGTTTACAATCAAACCACAAAATAAATATTATTTAGACACCCTAGGTACATGTCGACACAAAG
GATAAACATCACCACATT
Found at i:63042003 original size:6 final size:6
Alignment explanation
Indices: 63041992--63042038 Score: 85
Period size: 6 Copynumber: 7.8 Consensus size: 6
63041982 AACGCATATA
*
63041992 AGAAGG AGAAGG AGAAGG AGAAGA AGAAGG AGAAGG AGAAGG AGAAG
1 AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAG
63042039 CCATTTGTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (6 bp):
AGAAGG
Found at i:63042020 original size:24 final size:24
Alignment explanation
Indices: 63041991--63042038 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
63041981 AAACGCATAT
63041991 AAGAAGGAGAAGGAGAAGGAGAAG
1 AAGAAGGAGAAGGAGAAGGAGAAG
63042015 AAGAAGGAGAAGGAGAAGGAGAAG
1 AAGAAGGAGAAGGAGAAGGAGAAG
63042039 CCATTTGTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (24 bp):
AAGAAGGAGAAGGAGAAGGAGAAG
Found at i:63043015 original size:14 final size:14
Alignment explanation
Indices: 63042996--63043024 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
63042986 AAATGAATTA
63042996 TGTAATATATTATT
1 TGTAATATATTATT
63043010 TGTAATATATTATT
1 TGTAATATATTATT
63043024 T
1 T
63043025 ATAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TGTAATATATTATT
Found at i:63044080 original size:30 final size:33
Alignment explanation
Indices: 63044044--63044105 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 33
63044034 ATCTTAGAAA
* *
63044044 ATATA-TTATAA-AAAATAATTTGTA-TATTTT
1 ATATATTTATAACAAAAAAATTTATATTATTTT
63044074 ATATATTTATAACAAAAAAATTTATATTATTT
1 ATATATTTATAACAAAAAAATTTATATTATTT
63044106 AAATCCTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 5 0.19
31 6 0.22
32 11 0.41
33 5 0.19
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (33 bp):
ATATATTTATAACAAAAAAATTTATATTATTTT
Found at i:63045192 original size:30 final size:29
Alignment explanation
Indices: 63045132--63045192 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 29
63045122 TTTTTCCAAG
*
63045132 TTATTTTTTTTATATTTAACATTTTTATT
1 TTATTTTTTTTATATTTAACATTTTAATT
63045161 TTATTTTATTTTAT-TTTCAAC-TTATTAATT
1 TTATTTT-TTTTATATTT-AACATT-TTAATT
63045191 TT
1 TT
63045193 TGTTTCATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
29 12 0.43
30 16 0.57
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (29 bp):
TTATTTTTTTTATATTTAACATTTTAATT
Found at i:63045198 original size:20 final size:19
Alignment explanation
Indices: 63045175--63045213 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
63045165 TTTATTTTAT
*
63045175 TTTCAACTTATTAATTTTTG
1 TTTC-ACTTACTAATTTTTG
*
63045195 TTTCATTTACTAATTTTTG
1 TTTCACTTACTAATTTTTG
63045214 ACTCACCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.23, C:0.10, G:0.05, T:0.62
Consensus pattern (19 bp):
TTTCACTTACTAATTTTTG
Found at i:63046276 original size:11 final size:12
Alignment explanation
Indices: 63046248--63046276 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
63046238 AGGTTGTTAG
63046248 AATAACCAGACA
1 AATAACCAGACA
63046260 AATAACCAGAC-
1 AATAACCAGACA
63046271 AATAAC
1 AATAAC
63046277 ACATGGCATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 6 0.35
12 11 0.65
ACGTcount: A:0.59, C:0.24, G:0.07, T:0.10
Consensus pattern (12 bp):
AATAACCAGACA
Found at i:63049644 original size:30 final size:30
Alignment explanation
Indices: 63049610--63049670 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
63049600 TCCTTAACTC
63049610 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
63049640 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
63049670 A
1 A
63049671 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:63053029 original size:46 final size:46
Alignment explanation
Indices: 63052972--63053145 Score: 330
Period size: 46 Copynumber: 3.8 Consensus size: 46
63052962 AACTAGGCAT
* *
63052972 CCGAACTTGTTGAATTGAGTCCGAGTTCACTTATGGATGCAAACGC
1 CCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
63053018 CCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
1 CCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
63053064 CCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
1 CCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
63053110 CCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
63053146 GTGGGTTACA
Statistics
Matches: 126, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 126 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:63054575 original size:42 final size:43
Alignment explanation
Indices: 63054527--63054632 Score: 112
Period size: 44 Copynumber: 2.5 Consensus size: 43
63054517 TGCCACTCTT
63054527 CCAGACAGGGTCTTACAC-AAAATCA-AA-TACGATGCCAACGTC
1 CCAGACAGGGTCTTACACGAAAA-CATAAGT-CGATGCCAACGTC
* * *
63054569 CCAGACATGGTCTTATACGTAAAACATAAGTCGATGCCAATGTC
1 CCAGACAGGGTCTTACACG-AAAACATAAGTCGATGCCAACGTC
*
63054613 CTAGAC-GTGGTCTTACACGA
1 CCAGACAG-GGTCTTACACGA
63054633 TGGCACATAT
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
42 16 0.30
43 3 0.06
44 33 0.62
45 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (43 bp):
CCAGACAGGGTCTTACACGAAAACATAAGTCGATGCCAACGTC
Found at i:63078576 original size:28 final size:28
Alignment explanation
Indices: 63078509--63078885 Score: 587
Period size: 28 Copynumber: 13.5 Consensus size: 28
63078499 ATATTAAGTC
* * *
63078509 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
* *
63078536 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
63078564 CGCACACTGAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
63078592 CGCACACTCAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
63078620 CGCACACTCAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
63078648 CGCACACTCAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
63078676 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
* * *
63078704 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
* *
63078732 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAGTCAAACT
63078760 CGCACACTTAGTGCTACATAGTC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
63078787 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
63078815 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
* *
63078843 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAGTCAAACT
63078871 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63078886 GTACAATTTA
Statistics
Matches: 330, Mismatches: 18, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
27 47 0.14
28 283 0.86
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAGTCAAACT
Found at i:63081172 original size:20 final size:19
Alignment explanation
Indices: 63081125--63081173 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
63081115 TTTATTGAAA
*
63081125 ATGAATCAATATATATGTT
1 ATGAAACAATATATATGTT
* * *
63081144 ATTATACAATTTATCATGTT
1 ATGAAACAATATAT-ATGTT
63081164 ATGAAACAAT
1 ATGAAACAAT
63081174 GTAAATCCAA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (19 bp):
ATGAAACAATATATATGTT
Found at i:63081467 original size:21 final size:21
Alignment explanation
Indices: 63081443--63081486 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
63081433 ATAACAATTA
* *
63081443 TGTGAGTTAGTACACTTTGTG
1 TGTGAGTTAGCACACTCTGTG
63081464 TGTGAGTTAGCACACTCTGTG
1 TGTGAGTTAGCACACTCTGTG
63081485 TG
1 TG
63081487 AGCTATCCCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.18, C:0.14, G:0.30, T:0.39
Consensus pattern (21 bp):
TGTGAGTTAGCACACTCTGTG
Found at i:63087923 original size:40 final size:40
Alignment explanation
Indices: 63087839--63087931 Score: 125
Period size: 40 Copynumber: 2.3 Consensus size: 40
63087829 CATTTAAATG
* * * *
63087839 AAAAGCGCCGCTAAAGAATGAGCATTAGTGGCGCTTTTCC
1 AAAAACGCCGCTAAAGAACGAGCATTAGTGGCACTTTTCA
*
63087879 AAAAATGCCGCTAAAGAACGAGCATTAGTGGCAC-TTTCTA
1 AAAAACGCCGCTAAAGAACGAGCATTAGTGGCACTTTTC-A
63087919 AAAAACGCCGCTA
1 AAAAACGCCGCTA
63087932 TAGGTTCACC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.09
40 42 0.91
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (40 bp):
AAAAACGCCGCTAAAGAACGAGCATTAGTGGCACTTTTCA
Found at i:63088691 original size:15 final size:15
Alignment explanation
Indices: 63088671--63088722 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
63088661 TTTAAGGTTC
*
63088671 AGGGATTATATGTTT
1 AGGGATTATAAGTTT
**
63088686 AGGGATTATGGGTTT
1 AGGGATTATAAGTTT
*
63088701 AGGGTTTA-AAGTTT
1 AGGGATTATAAGTTT
63088715 AGGGATTA
1 AGGGATTA
63088723 GTGGGTAGGG
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
14 11 0.35
15 20 0.65
ACGTcount: A:0.27, C:0.00, G:0.33, T:0.40
Consensus pattern (15 bp):
AGGGATTATAAGTTT
Found at i:63088741 original size:7 final size:7
Alignment explanation
Indices: 63088731--63088831 Score: 76
Period size: 7 Copynumber: 13.4 Consensus size: 7
63088721 TAGTGGGTAG
63088731 GGGTTAA
1 GGGTTAA
63088738 GGGTTTTAA
1 GGG--TTAA
* *
63088747 TGGTTAT
1 GGGTTAA
63088754 GGGTTTAA
1 GGG-TTAA
63088762 GGGTTAA
1 GGGTTAA
*
63088769 GGGTTAT
1 GGGTTAA
63088776 GGGTTTAA
1 GGG-TTAA
*
63088784 TGGTTAA
1 GGGTTAA
*
63088791 GGGGATAA
1 -GGGTTAA
*
63088799 GGGTTAG
1 GGGTTAA
63088806 GGGTTAA
1 GGGTTAA
63088813 GTGGTTTAA
1 G-GG-TTAA
*
63088822 TGGTTAA
1 GGGTTAA
63088829 GGG
1 GGG
63088832 GACGTGGGTT
Statistics
Matches: 73, Mismatches: 14, Indels: 14
0.72 0.14 0.14
Matches are distributed among these distances:
7 43 0.59
8 20 0.27
9 10 0.14
ACGTcount: A:0.24, C:0.00, G:0.41, T:0.36
Consensus pattern (7 bp):
GGGTTAA
Found at i:63088766 original size:15 final size:15
Alignment explanation
Indices: 63088731--63088831 Score: 82
Period size: 15 Copynumber: 6.7 Consensus size: 15
63088721 TAGTGGGTAG
63088731 GGGTTAAGGGTTTTAA
1 GGGTTAAGGG-TTTAA
* *
63088747 TGGTTATGGGTTTAA
1 GGGTTAAGGGTTTAA
*
63088762 GGGTTAAGGG-TTAT
1 GGGTTAAGGGTTTAA
*
63088776 GGGTTTAATGG-TTAA
1 GGG-TTAAGGGTTTAA
* *
63088791 GGGGATAAGGG-TTAG
1 -GGGTTAAGGGTTTAA
63088806 GGGTTAAGTGGTTTAA
1 GGGTTAAG-GGTTTAA
*
63088822 TGGTTAAGGG
1 GGGTTAAGGG
63088832 GACGTGGGTT
Statistics
Matches: 68, Mismatches: 13, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
14 13 0.19
15 34 0.50
16 21 0.31
ACGTcount: A:0.24, C:0.00, G:0.41, T:0.36
Consensus pattern (15 bp):
GGGTTAAGGGTTTAA
Found at i:63088773 original size:22 final size:22
Alignment explanation
Indices: 63088734--63088793 Score: 84
Period size: 22 Copynumber: 2.6 Consensus size: 22
63088724 TGGGTAGGGG
*
63088734 TTAAGGGTTTTAATGGTTATGGGT
1 TTAAGGG--TTAAGGGTTATGGGT
63088758 TTAAGGGTTAAGGGTTATGGGT
1 TTAAGGGTTAAGGGTTATGGGT
*
63088780 TTAATGGTTAAGGG
1 TTAAGGGTTAAGGG
63088794 GATAAGGGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
22 27 0.79
24 7 0.21
ACGTcount: A:0.23, C:0.00, G:0.37, T:0.40
Consensus pattern (22 bp):
TTAAGGGTTAAGGGTTATGGGT
Found at i:63088828 original size:38 final size:37
Alignment explanation
Indices: 63088728--63088865 Score: 152
Period size: 38 Copynumber: 3.7 Consensus size: 37
63088718 GATTAGTGGG
* **
63088728 TAGGGGTTAAGGGTTTTAATGGTTATGGGTTTAAGGGT
1 TAGGGGTTAAGGG-TTTAATGGTTAAGGGGATAAGGGT
* *
63088766 TAAGGGTTATGGGTTTAATGGTTAAGGGGATAAGGGT
1 TAGGGGTTAAGGGTTTAATGGTTAAGGGGATAAGGGT
***
63088803 TAGGGGTTAAGTGGTTTAATGGTTAAGGGGACGTGGGT
1 TAGGGGTTAAG-GGTTTAATGGTTAAGGGGATAAGGGT
* *
63088841 TAGGGGTTTATGGTTT-ATGAGTTAA
1 TAGGGGTTAAGGGTTTAATG-GTTAA
63088866 TATTTTAAGG
Statistics
Matches: 86, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
36 3 0.03
37 40 0.47
38 43 0.50
ACGTcount: A:0.23, C:0.01, G:0.40, T:0.36
Consensus pattern (37 bp):
TAGGGGTTAAGGGTTTAATGGTTAAGGGGATAAGGGT
Found at i:63088830 original size:30 final size:30
Alignment explanation
Indices: 63088755--63088831 Score: 95
Period size: 30 Copynumber: 2.6 Consensus size: 30
63088745 AATGGTTATG
*
63088755 GGTTTAAGGGTTAAGGGTTATGGGTTTAAT
1 GGTTTAAGGGTTAAGGGTTATGGGGTTAAT
*
63088785 GG-TTAAGGGGATAAGGGTTA-GGGGTTAAGT
1 GGTTTAA-GGGTTAAGGGTTATGGGGTTAA-T
*
63088815 GGTTTAATGGTTAAGGG
1 GGTTTAAGGGTTAAGGG
63088832 GACGTGGGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
29 11 0.28
30 25 0.62
31 4 0.10
ACGTcount: A:0.25, C:0.00, G:0.42, T:0.34
Consensus pattern (30 bp):
GGTTTAAGGGTTAAGGGTTATGGGGTTAAT
Found at i:63088950 original size:28 final size:27
Alignment explanation
Indices: 63088910--63088962 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
63088900 TATGAGTTTA
* *
63088910 GGGATTATGGTTTATGGTTTAAGGGCT
1 GGGATTAAGGTTTAGGGTTTAAGGGCT
63088937 GGGATGTAAGGTTTAGGGTTTAAGGG
1 GGGAT-TAAGGTTTAGGGTTTAAGGG
63088963 TTTAGGGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.21, C:0.02, G:0.42, T:0.36
Consensus pattern (27 bp):
GGGATTAAGGTTTAGGGTTTAAGGGCT
Found at i:63088960 original size:14 final size:14
Alignment explanation
Indices: 63088905--63088971 Score: 55
Period size: 14 Copynumber: 4.7 Consensus size: 14
63088895 GGAGTTATGA
* *
63088905 GTTTAGGGATTATG
1 GTTTAGGGTTTAAG
*
63088919 GTTTATGGTTTAAG
1 GTTTAGGGTTTAAG
** *
63088933 GGCT-GGGATGTAAG
1 GTTTAGGG-TTTAAG
63088947 GTTTAGGGTTTAAGG
1 GTTTAGGGTTTAA-G
63088962 GTTTAGGGTT
1 GTTTAGGGTT
63088972 AATGAGATAG
Statistics
Matches: 40, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
13 2 0.05
14 24 0.60
15 14 0.35
ACGTcount: A:0.19, C:0.01, G:0.39, T:0.40
Consensus pattern (14 bp):
GTTTAGGGTTTAAG
Found at i:63089074 original size:7 final size:7
Alignment explanation
Indices: 63089064--63089097 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
63089054 AAAGGGACAA
63089064 GGGTTAG
1 GGGTTAG
*
63089071 GGGTTTAA
1 GGG-TTAG
63089079 GGGTTAG
1 GGGTTAG
63089086 GGGTTAG
1 GGGTTAG
63089093 GGGTT
1 GGGTT
63089098 GTTTTTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.15, C:0.00, G:0.53, T:0.32
Consensus pattern (7 bp):
GGGTTAG
Found at i:63089082 original size:15 final size:15
Alignment explanation
Indices: 63089062--63089090 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
63089052 TTAAAGGGAC
63089062 AAGGGTTAGGGGTTT
1 AAGGGTTAGGGGTTT
63089077 AAGGGTTAGGGGTT
1 AAGGGTTAGGGGTT
63089091 AGGGGTTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.48, T:0.31
Consensus pattern (15 bp):
AAGGGTTAGGGGTTT
Found at i:63089201 original size:51 final size:51
Alignment explanation
Indices: 63089142--63089258 Score: 164
Period size: 51 Copynumber: 2.3 Consensus size: 51
63089132 TATAGATTTA
*
63089142 AAGATTTCAAATTTAGAATAATTTTCAAGAATTAAAATTTTAAATAATTTTC
1 AAGATTTCAAATTTA-AATAATTTTCAAGAATTAAAATTTTAAATAATTTCC
* * *
63089194 -AGATTTCAAATTTTAAATAATTTTCAATATTTCAAATTTTAAATAATTTCC
1 AAGATTTCAAA-TTTAAATAATTTTCAAGAATTAAAATTTTAAATAATTTCC
*
63089245 AATATTTCAAATTT
1 AAGATTTCAAATTT
63089259 TATCTAATTC
Statistics
Matches: 58, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
51 45 0.78
52 13 0.22
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.45
Consensus pattern (51 bp):
AAGATTTCAAATTTAAATAATTTTCAAGAATTAAAATTTTAAATAATTTCC
Found at i:63089233 original size:16 final size:16
Alignment explanation
Indices: 63089212--63089258 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
63089202 AATTTTAAAT
63089212 AATTTTCAATATTTCA
1 AATTTTCAATATTTCA
* *
63089228 AATTTTAAATAATTTCC
1 AATTTTCAAT-ATTTCA
63089245 AATATTTCAA-ATTT
1 AAT-TTTCAATATTT
63089259 TATCTAATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 13 0.50
17 8 0.31
18 5 0.19
ACGTcount: A:0.40, C:0.11, G:0.00, T:0.49
Consensus pattern (16 bp):
AATTTTCAATATTTCA
Found at i:63089267 original size:26 final size:26
Alignment explanation
Indices: 63089145--63089260 Score: 146
Period size: 26 Copynumber: 4.5 Consensus size: 26
63089135 AGATTTAAAG
* *
63089145 ATTTCAAA-TTTAGAATAATTTTCAAG
1 ATTTCAAATTTTA-AATAATTTCCAAT
* * * *
63089171 AATTAAAATTTTAAATAATTTTC-AG
1 ATTTCAAATTTTAAATAATTTCCAAT
*
63089196 ATTTCAAATTTTAAATAATTTTCAAT
1 ATTTCAAATTTTAAATAATTTCCAAT
63089222 ATTTCAAATTTTAAATAATTTCCAAT
1 ATTTCAAATTTTAAATAATTTCCAAT
63089248 ATTTCAAATTTTA
1 ATTTCAAATTTTA
63089261 TCTAATTCTT
Statistics
Matches: 82, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
25 23 0.28
26 55 0.67
27 4 0.05
ACGTcount: A:0.43, C:0.08, G:0.03, T:0.47
Consensus pattern (26 bp):
ATTTCAAATTTTAAATAATTTCCAAT
Found at i:63091566 original size:42 final size:42
Alignment explanation
Indices: 63091506--63091611 Score: 122
Period size: 42 Copynumber: 2.5 Consensus size: 42
63091496 CCTGATCAGT
*
63091506 ATACGACACATAAAGTGCCTAAAACGACACACGAGGTGCCTG
1 ATACGACACACAAAGTGCCTAAAACGACACACGAGGTGCCTG
* * * * *
63091548 ATACGACACACGAGGTGCCTGATACGACACACGAGTTGCCTG
1 ATACGACACACAAAGTGCCTAAAACGACACACGAGGTGCCTG
* *
63091590 AAATACAACACATAAAGTGCCT
1 --ATACGACACACAAAGTGCCT
63091612 GATTGATAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 36 0.69
44 16 0.31
ACGTcount: A:0.37, C:0.26, G:0.21, T:0.16
Consensus pattern (42 bp):
ATACGACACACAAAGTGCCTAAAACGACACACGAGGTGCCTG
Found at i:63091601 original size:23 final size:21
Alignment explanation
Indices: 63091506--63091590 Score: 116
Period size: 21 Copynumber: 4.0 Consensus size: 21
63091496 CCTGATCAGT
** * *
63091506 ATACGACACATAAAGTGCCTA
1 ATACGACACACGAGGTGCCTG
*
63091527 AAACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
63091548 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
*
63091569 ATACGACACACGAGTTGCCTG
1 ATACGACACACGAGGTGCCTG
63091590 A
1 A
63091591 AATACAACAC
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 57 1.00
ACGTcount: A:0.34, C:0.27, G:0.24, T:0.15
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:63092009 original size:15 final size:15
Alignment explanation
Indices: 63091984--63092041 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
63091974 TCATGTATAT
63091984 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
63092000 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
63092015 AATAATTTCAATCAA
1 TATAAATTCAATCAA
63092030 TATAAATTCAAT
1 TATAAATTCAAT
63092042 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:63095600 original size:67 final size:67
Alignment explanation
Indices: 63095487--63095624 Score: 249
Period size: 67 Copynumber: 2.1 Consensus size: 67
63095477 CTCAATTTAT
63095487 AATGGCAAACCACATAGACAACTAAGATTAGCCATGGGAGTAGCAACTAGCATGCTTTACATCAT
1 AATGGCAAACCACATAGACAACTAAGATTAGCCATGGGAGTAGCAACTAGCATGCTTTACATCAT
63095552 AA
66 AA
* * *
63095554 AATGGCAAACCACATAGACAACTAAGATTATCCATTGGAGTCGCAACTAGCATGCTTTACATCAT
1 AATGGCAAACCACATAGACAACTAAGATTAGCCATGGGAGTAGCAACTAGCATGCTTTACATCAT
63095619 AA
66 AA
63095621 AATG
1 AATG
63095625 CAGGTGTATG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 68 1.00
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.22
Consensus pattern (67 bp):
AATGGCAAACCACATAGACAACTAAGATTAGCCATGGGAGTAGCAACTAGCATGCTTTACATCAT
AA
Found at i:63096257 original size:24 final size:24
Alignment explanation
Indices: 63096230--63096276 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
63096220 ATTATTATTG
*
63096230 AAATATTCTCATACGTTTTATCAC
1 AAATATTATCATACGTTTTATCAC
* *
63096254 AAATATTATCGTCCGTTTTATCA
1 AAATATTATCATACGTTTTATCA
63096277 TTTACGTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.43
Consensus pattern (24 bp):
AAATATTATCATACGTTTTATCAC
Found at i:63096512 original size:15 final size:14
Alignment explanation
Indices: 63096490--63096566 Score: 63
Period size: 14 Copynumber: 5.6 Consensus size: 14
63096480 TCAATCTTAT
63096490 TTTAATTAATATAA
1 TTTAATTAATATAA
*
63096504 TTTAGATTAAT-TTA
1 TTTA-ATTAATATAA
*
63096518 TTT-A--AATATTA
1 TTTAATTAATATAA
63096529 TTTAATTAATATAA
1 TTTAATTAATATAA
* * *
63096543 TTTTTATAAATATTA
1 -TTTAATTAATATAA
63096558 TTTAATTAA
1 TTTAATTAA
63096567 AATATTTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
10 3 0.06
11 6 0.12
12 2 0.04
14 22 0.44
15 17 0.34
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (14 bp):
TTTAATTAATATAA
Found at i:63096522 original size:24 final size:24
Alignment explanation
Indices: 63096490--63096544 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
63096480 TCAATCTTAT
63096490 TTTAATT-AATATAATTTAGATTAA
1 TTTAATTAAATATAATTTA-ATTAA
* *
63096514 TTTATTTAAATATTATTTAATTAA
1 TTTAATTAAATATAATTTAATTAA
*
63096538 TATAATT
1 TTTAATT
63096545 TTTATAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 16 0.62
25 10 0.38
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (24 bp):
TTTAATTAAATATAATTTAATTAA
Found at i:63096543 original size:29 final size:29
Alignment explanation
Indices: 63096511--63096576 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
63096501 TAATTTAGAT
63096511 TAATTTATT-TAAATATTATTTAATTAATA
1 TAATTT-TTATAAATATTATTTAATTAATA
*
63096540 TAATTTTTATAAATATTATTTAATTAAAA
1 TAATTTTTATAAATATTATTTAATTAATA
*
63096569 TATTTTTT
1 TAATTTTT
63096577 TTCCATGTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 2 0.06
29 32 0.94
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (29 bp):
TAATTTTTATAAATATTATTTAATTAATA
Found at i:63096545 original size:25 final size:26
Alignment explanation
Indices: 63096497--63096566 Score: 72
Period size: 29 Copynumber: 2.6 Consensus size: 26
63096487 TATTTTAATT
* *
63096497 AATATAATTTAGATTAATTTA-TT-TA
1 AATATTATTTA-ATTAATTAATTTATA
63096522 AATATTATTTAATTAATATAATTTTTATA
1 AATATTATTTAATTAAT-TAA--TTTATA
63096551 AATATTATTTAATTAA
1 AATATTATTTAATTAA
63096567 AATATTTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
24 6 0.16
25 12 0.32
28 2 0.05
29 18 0.47
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (26 bp):
AATATTATTTAATTAATTAATTTATA
Found at i:63096549 original size:20 final size:20
Alignment explanation
Indices: 63096490--63096549 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
63096480 TCAATCTTAT
**
63096490 TTTAATTAATATAATTTAGA
1 TTTAATTAATATAATTTTTA
* * * *
63096510 -TTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTTTA
63096529 TTTAATTAATATAATTTTTA
1 TTTAATTAATATAATTTTTA
63096549 T
1 T
63096550 AAATATTATT
Statistics
Matches: 29, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
TTTAATTAATATAATTTTTA
Found at i:63096567 original size:15 final size:15
Alignment explanation
Indices: 63096513--63096572 Score: 63
Period size: 16 Copynumber: 4.0 Consensus size: 15
63096503 ATTTAGATTA
*
63096513 ATTTATTTAAATATT
1 ATTTAATTAAATATT
63096528 ATTTAATTAATATAATT
1 ATTTAATTAA-AT-ATT
63096545 -TTT-A-TAAATATT
1 ATTTAATTAAATATT
63096557 ATTTAATTAAAATATT
1 ATTTAATT-AAATATT
63096573 TTTTTTCCAT
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
12 3 0.08
13 5 0.13
14 4 0.11
15 11 0.29
16 12 0.32
17 3 0.08
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTTAATTAAATATT
Found at i:63096874 original size:9 final size:9
Alignment explanation
Indices: 63096848--63096959 Score: 152
Period size: 9 Copynumber: 12.4 Consensus size: 9
63096838 TATATACTTG
*
63096848 AACTTACAT
1 AACTCACAT
*
63096857 AGCTCACAT
1 AACTCACAT
*
63096866 AACTAACAT
1 AACTCACAT
* *
63096875 AACTTATAT
1 AACTCACAT
*
63096884 AACTTACAT
1 AACTCACAT
63096893 AACTCACAT
1 AACTCACAT
*
63096902 AACTTACAT
1 AACTCACAT
*
63096911 AACTTACAT
1 AACTCACAT
63096920 AACTCACAT
1 AACTCACAT
63096929 AACTCACAT
1 AACTCACAT
63096938 AACTCACAT
1 AACTCACAT
63096947 AACTCACAT
1 AACTCACAT
63096956 AACT
1 AACT
63096960 TAATTATACT
Statistics
Matches: 93, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 93 1.00
ACGTcount: A:0.45, C:0.27, G:0.01, T:0.28
Consensus pattern (9 bp):
AACTCACAT
Found at i:63096892 original size:27 final size:27
Alignment explanation
Indices: 63096848--63096961 Score: 174
Period size: 27 Copynumber: 4.2 Consensus size: 27
63096838 TATATACTTG
* *
63096848 AACTTACATAGCTCACATAACTAACAT
1 AACTTACATAACTCACATAACTCACAT
* *
63096875 AACTTATATAACTTACATAACTCACAT
1 AACTTACATAACTCACATAACTCACAT
*
63096902 AACTTACATAACTTACATAACTCACAT
1 AACTTACATAACTCACATAACTCACAT
*
63096929 AACTCACATAACTCACATAACTCACAT
1 AACTTACATAACTCACATAACTCACAT
63096956 AACTTA
1 AACTTA
63096962 ATTATACTTA
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.28
Consensus pattern (27 bp):
AACTTACATAACTCACATAACTCACAT
Found at i:63101341 original size:65 final size:64
Alignment explanation
Indices: 63101255--63101380 Score: 216
Period size: 65 Copynumber: 2.0 Consensus size: 64
63101245 GGTCAGCCTA
*
63101255 TTGGATCGAAGCTCAACTTTTAGCAGGCTATTTGGGCATTTTAGCACGAAATGCCAATATGCTG
1 TTGGATCGAAGCTCAACTTTTAGCAGGCTATTTGGGCATTATAGCACGAAATGCCAATATGCTG
* *
63101319 TTGGATCTGAAGCTCGACTTTTAGCAGGCTATTTTGGCATTATAGCACGAAATGCCAATATG
1 TTGGATC-GAAGCTCAACTTTTAGCAGGCTATTTGGGCATTATAGCACGAAATGCCAATATG
63101381 TTGCCCATCA
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
64 7 0.12
65 51 0.88
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (64 bp):
TTGGATCGAAGCTCAACTTTTAGCAGGCTATTTGGGCATTATAGCACGAAATGCCAATATGCTG
Found at i:63102129 original size:13 final size:14
Alignment explanation
Indices: 63102113--63102141 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
63102103 TTATAAATAT
63102113 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
63102126 TTATAATGGTTTAA
1 TTATAATGGTTTAA
63102140 TT
1 TT
63102142 CATCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:63102572 original size:21 final size:21
Alignment explanation
Indices: 63102543--63102597 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
63102533 ACAACTTAGA
63102543 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGGGAG
* * *
63102564 GCAGCGGCAGTAGCGAGGGAG
1 GCAGAGGCAGCAGAGAGGGAG
*
63102585 GTAGAGGCAGCAG
1 GCAGAGGCAGCAG
63102598 CAATGGCAGT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.29, C:0.16, G:0.51, T:0.04
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGGGAG
Found at i:63102871 original size:32 final size:31
Alignment explanation
Indices: 63102852--63102917 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
63102842 TTGTATTTTT
*
63102852 ATGCTATATTTGCTATTTTTGGTTGGATTTC
1 ATGCTATATTTGCTATTTTTGATTGGATTTC
* * *
63102883 ATGCTATATTTGCTGTTTTTGGTTGGATTTA
1 ATGCTATATTTGCTATTTTTGATTGGATTTC
63102914 ATGC
1 ATGC
63102918 AGGAAGGGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.17, C:0.09, G:0.21, T:0.53
Consensus pattern (31 bp):
ATGCTATATTTGCTATTTTTGATTGGATTTC
Found at i:63103547 original size:35 final size:35
Alignment explanation
Indices: 63103508--63103574 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
63103498 GTATGCTTAG
63103508 AAATGACCAAAATTGGTAT-G-TGTTAATGTATCTTT
1 AAATGACCAAAA-TGGTATGGTTGTT-ATGTATCTTT
*
63103543 AAATGGCCAAAATGGTATGGTTGTTATGTATC
1 AAATGACCAAAATGGTATGGTTGTTATGTATC
63103575 AATTATGTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 6 0.21
35 19 0.66
36 4 0.14
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (35 bp):
AAATGACCAAAATGGTATGGTTGTTATGTATCTTT
Found at i:63109317 original size:40 final size:40
Alignment explanation
Indices: 63109225--63109381 Score: 163
Period size: 40 Copynumber: 3.9 Consensus size: 40
63109215 AAGTGCATTT
* * * *
63109225 AGGGGTACCTAAGTACAAATAGAGGCACGTATATGCAATA
1 AGGGGTACCGAAGTACAAACAGAGGCACGTATGTGCAATC
** * *
63109265 AACGGTACCGAAGTACAAACAAAGGCACGCATGTGCAATC
1 AGGGGTACCGAAGTACAAACAGAGGCACGTATGTGCAATC
* * *
63109305 AGGGGTATCGAAGTACGAAA-AGGGGCACGTAAGTGCAATC
1 AGGGGTACCGAAGTAC-AAACAGAGGCACGTATGTGCAATC
* * * *
63109345 ATGGGTACTGAAGTACAAACAGTGGCACGTAAGTGCA
1 AGGGGTACCGAAGTACAAACAGAGGCACGTATGTGCA
63109382 TTCATCAATA
Statistics
Matches: 96, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 3 0.03
40 90 0.94
41 3 0.03
ACGTcount: A:0.38, C:0.18, G:0.28, T:0.17
Consensus pattern (40 bp):
AGGGGTACCGAAGTACAAACAGAGGCACGTATGTGCAATC
Found at i:63109381 original size:80 final size:80
Alignment explanation
Indices: 63109208--63109381 Score: 190
Period size: 80 Copynumber: 2.2 Consensus size: 80
63109198 TATAAATAGG
* * * *
63109208 GGCATGTAAGTGCATTTAGGGGTACCTAAGTACAAATAGAGGCACGTATATGCAATAAACGGTAC
1 GGCACGTAAGTGCAATCAGGGGTACCGAAGTACAAATAGAGGCACGTATATGCAATAAACGGTAC
63109273 CGAAGTACAAACAAA
66 CGAAGTACAAACAAA
* * * * * **
63109288 GGCACGCATGTGCAATCAGGGGTATCGAAGTACGAAA-AGGGGCACGTA-AGTGCAATCATGGGT
1 GGCACGTAAGTGCAATCAGGGGTACCGAAGTAC-AAATAGAGGCACGTATA-TGCAATAAACGGT
* **
63109351 ACTGAAGTACAAACAGT
64 ACCGAAGTACAAACAAA
63109368 GGCACGTAAGTGCA
1 GGCACGTAAGTGCA
63109382 TTCATCAATA
Statistics
Matches: 76, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
79 1 0.01
80 72 0.95
81 3 0.04
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.18
Consensus pattern (80 bp):
GGCACGTAAGTGCAATCAGGGGTACCGAAGTACAAATAGAGGCACGTATATGCAATAAACGGTAC
CGAAGTACAAACAAA
Found at i:63111383 original size:27 final size:26
Alignment explanation
Indices: 63111335--63111394 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
63111325 GTGAGGCTGC
*
63111335 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
63111362 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
63111388 CAAATAT
1 CAGATAT
63111395 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:63111916 original size:16 final size:15
Alignment explanation
Indices: 63111895--63111925 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
63111885 TAGAATGCCC
63111895 GCTTTTCGGCATTTTG
1 GCTTTTCGGC-TTTTG
63111911 GCTTTTCGGCTTTTG
1 GCTTTTCGGCTTTTG
63111926 CTGATCTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.03, C:0.19, G:0.26, T:0.52
Consensus pattern (15 bp):
GCTTTTCGGCTTTTG
Found at i:63118509 original size:27 final size:26
Alignment explanation
Indices: 63118461--63118520 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
63118451 GCGAGGCTGC
*
63118461 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
63118488 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
63118514 CAGATAT
1 CAGATAT
63118521 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:63118566 original size:71 final size:67
Alignment explanation
Indices: 63118488--63118629 Score: 178
Period size: 67 Copynumber: 2.1 Consensus size: 67
63118478 TCACCAGATA
* * *
63118488 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAA-GCCACCAGATTACAGCG
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGC-AAGGCCACCAGATTACAGCG
*
63118552 AGGCTGT
61 AGGCTGC
* *
63118559 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCAAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCAAGGCCACCAGATTACAGCGAGGCT
63118624 GC
66 GC
63118626 CAGA
1 CAGA
63118630 ACGCTTCCTC
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
66 2 0.03
67 37 0.58
71 25 0.39
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.19
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCAAGGCCACCAGATTACAGCGAGGCT
GC
Found at i:63119292 original size:27 final size:27
Alignment explanation
Indices: 63119262--63119460 Score: 267
Period size: 27 Copynumber: 7.4 Consensus size: 27
63119252 GGGGCAAAAT
* * * *
63119262 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63119289 GGTAATTCTACCCTATAGGGGTATTT-
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
63119315 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
63119342 CATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
63119369 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
63119396 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63119423 GGTAATTCTACCTTAC-GAGGGTATTTC
1 GGTAATTCTACCCTACAG-GGGTATTTC
63119450 GGTAATTCTAC
1 GGTAATTCTAC
63119461 AACTTATCCA
Statistics
Matches: 151, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 24 0.16
27 127 0.84
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:63129619 original size:40 final size:40
Alignment explanation
Indices: 63129559--63129742 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
63129549 TATTCGAATG
* *
63129559 ATATCCAGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
63129599 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
63129639 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
63129679 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
63129719 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
63129743 CTTGTGCGAG
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 119 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:63129692 original size:80 final size:80
Alignment explanation
Indices: 63129559--63129778 Score: 270
Period size: 80 Copynumber: 2.8 Consensus size: 80
63129549 TATTCGAATG
* * * * *
63129559 ATATCCAGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
* *
63129623 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
*
63129639 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAG-TCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
*
63129703 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
* * *
63129719 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAG
63129779 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
78 14 0.11
79 20 0.16
80 89 0.72
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:63136270 original size:40 final size:39
Alignment explanation
Indices: 63136172--63136434 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
63136162 TCCTCGTTCA
* * * *
63136172 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
63136211 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
63136250 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
63136290 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
63136330 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
63136370 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
63136411 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
63136435 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:63136394 original size:120 final size:119
Alignment explanation
Indices: 63136172--63136434 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
63136162 TCCTCGTTCA
* * *
63136172 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
63136237 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
63136290 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
63136355 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
63136411 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
63136435 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:63136443 original size:41 final size:41
Alignment explanation
Indices: 63136366--63136443 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
63136356 TTTGTATCTC
* * *
63136366 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
63136407 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
63136444 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:63142790 original size:45 final size:45
Alignment explanation
Indices: 63142726--63142887 Score: 222
Period size: 45 Copynumber: 3.6 Consensus size: 45
63142716 TATTGTACGG
* *
63142726 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
63142771 TACTATTCGGGCCTTTGAGCTTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
63142816 TACTATCCAGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
63142861 TGA-TA-TCGGG-CTTCGAGCCTAGCAGGC
1 T-ACTATTCGGGCCTTCGAGCCTAGCAGGC
63142888 GAAATACCGG
Statistics
Matches: 106, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
43 17 0.16
44 3 0.03
45 85 0.80
46 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (45 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:63143093 original size:69 final size:69
Alignment explanation
Indices: 63143016--63143153 Score: 258
Period size: 69 Copynumber: 2.0 Consensus size: 69
63143006 TAAGTTGGCC
* *
63143016 AGGTACGTATTATGTACTTATATGTGAGTTTGATTTGAATTGAATCATAAGTGTATAATGTGATA
1 AGGTACGTATTATGTACTTATATGTGAGTTTGATTTGAATTGAACCATAAGTGTACAATGTGATA
63143081 CATA
66 CATA
63143085 AGGTACGTATTATGTACTTATATGTGAGTTTGATTTGAATTGAACCATAAGTGTACAATGTGATA
1 AGGTACGTATTATGTACTTATATGTGAGTTTGATTTGAATTGAACCATAAGTGTACAATGTGATA
63143150 CATA
66 CATA
63143154 TGTGAATAAA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.39
Consensus pattern (69 bp):
AGGTACGTATTATGTACTTATATGTGAGTTTGATTTGAATTGAACCATAAGTGTACAATGTGATA
CATA
Found at i:63145384 original size:46 final size:46
Alignment explanation
Indices: 63145327--63145460 Score: 162
Period size: 46 Copynumber: 2.9 Consensus size: 46
63145317 GGGATATTTG
*
63145327 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGA-ACGA
* * ** * *
63145374 -GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGCGAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TCATGGAACGA
* *
63145420 GGCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGG
63145461 GCGGGTTACA
Statistics
Matches: 72, Mismatches: 13, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
46 37 0.51
47 35 0.49
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGAACGA
Found at i:63145448 original size:47 final size:47
Alignment explanation
Indices: 63145327--63145454 Score: 161
Period size: 47 Copynumber: 2.7 Consensus size: 47
63145317 GGGATATTTG
* *
63145327 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACACATGGATACGA
* * * * *
63145374 -GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGCGAGATGTA-ACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-ACATGGATACGA
*
63145420 GGCATTCGAACTCGTTGAGTTGAGTCCGAGTTCAC
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC
63145455 TTATGGGCGG
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 34 0.49
47 35 0.51
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.27
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACACATGGATACGA
Found at i:63159617 original size:24 final size:25
Alignment explanation
Indices: 63159590--63159653 Score: 87
Period size: 24 Copynumber: 2.6 Consensus size: 25
63159580 TCAACCAAAT
* * *
63159590 TCGCACACATAGTGCTA-ATTAAGC
1 TCGCACACATAGTGCCATACTAAAC
63159614 TCGCACACATAGTGCCATACTAAAC
1 TCGCACACATAGTGCCATACTAAAC
63159639 -CGCACACATAGTGCC
1 TCGCACACATAGTGCC
63159654 TGAAATTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.33, C:0.31, G:0.16, T:0.20
Consensus pattern (25 bp):
TCGCACACATAGTGCCATACTAAAC
Found at i:63159704 original size:24 final size:24
Alignment explanation
Indices: 63159677--63159726 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
63159667 CATGCATCAA
63159677 CATTCAAATCTC-CACACATAGTGC
1 CATTCAAATC-CGCACACATAGTGC
* *
63159701 CATTTAATTCCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
63159725 CA
1 CA
63159727 ATGTTAACTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 22 0.96
ACGTcount: A:0.32, C:0.32, G:0.10, T:0.26
Consensus pattern (24 bp):
CATTCAAATCCGCACACATAGTGC
Found at i:63159799 original size:94 final size:94
Alignment explanation
Indices: 63159682--63160151 Score: 868
Period size: 94 Copynumber: 5.0 Consensus size: 94
63159672 ATCAACATTC
* * * * * *
63159682 AAATCTCCACACATAGTGCCATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTACACACAAAGCGACATTTAATTTCACACACATAGTGCCAATGTTAACTCATTATAATAA
63159747 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
63159776 AAATCTACACACAAAGCGACATTTAATTTCACACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTACACACAAAGCGACATTTAATTTCACACACATAGTGCCAATGTTAACTCATTATAATAA
63159841 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
63159870 AAATCTACACACAAAGCGACATTTAATTTCACACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTACACACAAAGCGACATTTAATTTCACACACATAGTGCCAATGTTAACTCATTATAATAA
63159935 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
63159964 AAATCTACACACAAAGCGACATTTAATTTCACACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTACACACAAAGCGACATTTAATTTCACACACATAGTGCCAATGTTAACTCATTATAATAA
63160029 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
*
63160058 AAATCTACACACAAAGCGACATTTAATTTCACACACATAGTGCCAATGTTAACTCATTATAATAT
1 AAATCTACACACAAAGCGACATTTAATTTCACACACATAGTGCCAATGTTAACTCATTATAATAA
*
63160123 GGCAACTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
63160152 CGATCACATT
Statistics
Matches: 368, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 368 1.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (94 bp):
AAATCTACACACAAAGCGACATTTAATTTCACACACATAGTGCCAATGTTAACTCATTATAATAA
GGCAATTTACTTAATTCAAATAGCATATA
Found at i:63162768 original size:17 final size:17
Alignment explanation
Indices: 63162746--63162789 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
63162736 AATGGGTTGT
63162746 GTGGGCCCTACGAGCTC
1 GTGGGCCCTACGAGCTC
*
63162763 GTGGGCCCTACGGGCTC
1 GTGGGCCCTACGAGCTC
63162780 GTGGGCCCTA
1 GTGGGCCCTA
63162790 TATGGGTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.09, C:0.34, G:0.39, T:0.18
Consensus pattern (17 bp):
GTGGGCCCTACGAGCTC
Found at i:63164889 original size:40 final size:40
Alignment explanation
Indices: 63164822--63164974 Score: 204
Period size: 40 Copynumber: 3.9 Consensus size: 40
63164812 ACCCAAGTAT
*
63164822 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
63164861 CCTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
63164901 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* *
63164941 CTTCGGGACATAGCCCGGATATAGCAACTCGCAC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
63164975 NNNNNNNNNN
Statistics
Matches: 99, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
38 1 0.01
39 12 0.12
40 84 0.85
41 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:63175909 original size:27 final size:27
Alignment explanation
Indices: 63175879--63176056 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63175869 ATATTGAGTC
* * * *
63175879 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
63175906 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63175933 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
63175961 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
63175988 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
63176015 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63176042 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63176057 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:63176018 original size:82 final size:81
Alignment explanation
Indices: 63175900--63176055 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63175890 TGCTATATAA
* *
63175900 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
63175965 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
63175982 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
63176046 CACTTAGTGC
65 CACTTAGTGC
63176056 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:63191360 original size:41 final size:39
Alignment explanation
Indices: 63191221--63191347 Score: 155
Period size: 39 Copynumber: 3.3 Consensus size: 39
63191211 ATTCACTTTT
* * *
63191221 AAGCATATATCACATTACACATATAATCACATAACATTT
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
** * ** * **
63191260 ATTCGTATATCACAATACTTTTATAATTACATAATGTTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
63191299 AAGCATATATCACAATACTCATATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
63191338 AAGCATATAT
1 AAGCATATAT
63191348 ATCGTAATAC
Statistics
Matches: 69, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
39 69 1.00
ACGTcount: A:0.43, C:0.19, G:0.04, T:0.34
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATCACATAACATTC
Found at i:63199491 original size:12 final size:12
Alignment explanation
Indices: 63199474--63199504 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
63199464 ATTTTTGTCC
63199474 ACACGGGTAGAG
1 ACACGGGTAGAG
63199486 ACACGGGTAGAG
1 ACACGGGTAGAG
63199498 ACACGGG
1 ACACGGG
63199505 CGTGTGTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.32, C:0.19, G:0.42, T:0.06
Consensus pattern (12 bp):
ACACGGGTAGAG
Found at i:63216498 original size:21 final size:21
Alignment explanation
Indices: 63216460--63216500 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
63216450 ATGGATGTGT
* *
63216460 GGGATTTCCATACTGGCGTGA
1 GGGATTTCCACACGGGCGTGA
*
63216481 GGGATTTCTACACGGGCGTG
1 GGGATTTCCACACGGGCGTG
63216501 TGTGATCTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.20, G:0.37, T:0.27
Consensus pattern (21 bp):
GGGATTTCCACACGGGCGTGA
Found at i:63219376 original size:22 final size:22
Alignment explanation
Indices: 63219348--63219394 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
63219338 GTATGTGATG
63219348 TTCATTAAAAGTGAATTTTCAC
1 TTCATTAAAAGTGAATTTTCAC
*
63219370 TTCATTAAAAGTGAATTTTGAC
1 TTCATTAAAAGTGAATTTTCAC
63219392 TTC
1 TTC
63219395 TAGAAGTGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.43
Consensus pattern (22 bp):
TTCATTAAAAGTGAATTTTCAC
Found at i:63219734 original size:34 final size:34
Alignment explanation
Indices: 63219691--63219758 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
63219681 TCTAAATCCA
63219691 AGAAGGAATTTACTGTTTTTAGTGATACATCACT
1 AGAAGGAATTTACTGTTTTTAGTGATACATCACT
* *
63219725 AGAAGGAATTTATTGTTTTTAGTGATACGTCACT
1 AGAAGGAATTTACTGTTTTTAGTGATACATCACT
63219759 TAACGGTCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (34 bp):
AGAAGGAATTTACTGTTTTTAGTGATACATCACT
Found at i:63224248 original size:43 final size:43
Alignment explanation
Indices: 63224103--63224263 Score: 186
Period size: 43 Copynumber: 3.7 Consensus size: 43
63224093 TGTGTTATCG
*
63224103 TGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTCTGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT-TGA-TTACA
* * * * *
63224147 TGTAAGACCATGTTTGGGACATTGGCATCG-TATATT-ATTTCC
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATAT-TTGATTACA
**
63224189 TGTAAGACCTTGTCTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCACGTCTGGGAC-GTTGGCATCGATATTTGATTACA
63224232 TGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 TGTAAGACCACGTCTGGGACGTTGGCATCGAT
63224264 TTGAATTGTA
Statistics
Matches: 99, Mismatches: 12, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
42 32 0.32
43 37 0.37
44 29 0.29
45 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:63229992 original size:23 final size:22
Alignment explanation
Indices: 63229966--63230013 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
63229956 TTTGATGATG
63229966 ATTT-TGAGTTATGCAATTGTTCA
1 ATTTGTGAGTTATG-AATTGTT-A
*
63229989 ATTTGTGAGTTTTGAATTGTTA
1 ATTTGTGAGTTATGAATTGTTA
63230011 ATT
1 ATT
63230014 AATGAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 4 0.17
23 11 0.48
24 8 0.35
ACGTcount: A:0.25, C:0.04, G:0.19, T:0.52
Consensus pattern (22 bp):
ATTTGTGAGTTATGAATTGTTA
Found at i:63230844 original size:43 final size:43
Alignment explanation
Indices: 63230686--63230842 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
63230676 TGCGTTATCG
*
63230686 TGTAAGACCACGTCTGGGATGTTGGCATCGAT-TTGTGATTTACA
1 TGTAAGACCTCGTCTGGGATGTTGGCATCGATATT-TGA-TTACA
* * * *
63230730 TGTAAGACCAT-GTCTGGGATATTGGCATCG-TATATGATTTCG
1 TGTAAGACC-TCGTCTGGGATGTTGGCATCGATATTTGATTACA
* * * *
63230772 TGTAAGACCTTGCCTGGGACAG-TGGCATTGATATTTGATTACA
1 TGTAAGACCTCGTCTGGGA-TGTTGGCATCGATATTTGATTACA
63230815 TGTAAGACCTCGTCTGGGATGTTGGCAT
1 TGTAAGACCTCGTCTGGGATGTTGGCAT
63230843 TGTATGAGCT
Statistics
Matches: 92, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.29
43 36 0.39
44 28 0.30
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (43 bp):
TGTAAGACCTCGTCTGGGATGTTGGCATCGATATTTGATTACA
Found at i:63233853 original size:27 final size:27
Alignment explanation
Indices: 63233812--63233930 Score: 166
Period size: 27 Copynumber: 4.4 Consensus size: 27
63233802 TGGATAAGTT
63233812 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
63233839 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
63233866 GTAGAATTATCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
63233893 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
63233920 GTAAAATTACC
1 GTAGAATTACC
63233931 ATTTTGCCCC
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:63234629 original size:26 final size:26
Alignment explanation
Indices: 63234582--63234632 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
63234572 CTCGCTGCAA
63234582 TCTGGTGCCTCGCCACATATATCTGT
1 TCTGGTGCCTCGCCACATATATCTGT
* *
63234608 TCTGGTGGCTTCGTCACA-ATATCTG
1 TCTGGT-GCCTCGCCACATATATCTG
63234633 GCATCCTCGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.16, C:0.27, G:0.22, T:0.35
Consensus pattern (26 bp):
TCTGGTGCCTCGCCACATATATCTGT
Found at i:63234697 original size:71 final size:66
Alignment explanation
Indices: 63234571--63234700 Score: 170
Period size: 71 Copynumber: 1.9 Consensus size: 66
63234561 GTTCTAGCAG
* * * *
63234571 CCTCGCTGCAATCTGGTGCCTCGCCACATATATCTGTTCTGGTGGCTTCGTCACAATATCTGGCA
1 CCTCGCTGCAATCTGGTGCCTCACCACATATATCTGTTCTGGTGGCCTAGCCACAATATCTGGCA
63234636 T
66 T
*
63234637 CCTCGCTGCAATCTGGTGGCTTCACCACATATATATATCTGTTCTGGTGGCCTAGCCACAATAT
1 CCTCGCTGCAATCTGGT-GCCTCACCAC----ATATATCTGTTCTGGTGGCCTAGCCACAATAT
63234701 TTGTATCTGG
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
66 17 0.31
67 8 0.15
71 29 0.54
ACGTcount: A:0.19, C:0.29, G:0.20, T:0.32
Consensus pattern (66 bp):
CCTCGCTGCAATCTGGTGCCTCACCACATATATCTGTTCTGGTGGCCTAGCCACAATATCTGGCA
T
Found at i:63243210 original size:51 final size:52
Alignment explanation
Indices: 63243140--63243242 Score: 147
Period size: 51 Copynumber: 2.0 Consensus size: 52
63243130 AATGGAAAAG
* * *
63243140 AGTTACTATGGACTTTGTAA-TGAGATTAACTTTATCACCG-AAAAGAAAGAT
1 AGTTACCACGGACTTTGTAACAG-GATTAACTTTATCACCGAAAAAGAAAGAT
*
63243191 AGTTACCACGGACTTTGTAACAGGATTATCTTTATCACCGAAAAAGAAAGAT
1 AGTTACCACGGACTTTGTAACAGGATTAACTTTATCACCGAAAAAGAAAGAT
63243243 GTTGTCTAGG
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
51 34 0.74
52 12 0.26
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (52 bp):
AGTTACCACGGACTTTGTAACAGGATTAACTTTATCACCGAAAAAGAAAGAT
Found at i:63246714 original size:21 final size:21
Alignment explanation
Indices: 63246690--63246743 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
63246680 CGGCCTAACC
63246690 ACACGGGCGTGTCCCTAGACA
1 ACACGGGCGTGTCCCTAGACA
* ** *
63246711 ACACAGGCGCATCCCTAGACC
1 ACACGGGCGTGTCCCTAGACA
*
63246732 ACACGAGCGTGT
1 ACACGGGCGTGT
63246744 GACCCTTGTA
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.26, C:0.35, G:0.26, T:0.13
Consensus pattern (21 bp):
ACACGGGCGTGTCCCTAGACA
Found at i:63249125 original size:27 final size:27
Alignment explanation
Indices: 63249095--63249491 Score: 533
Period size: 27 Copynumber: 14.7 Consensus size: 27
63249085 ACCAAAGTAT
* ***
63249095 CCTCAATTTACAGAATTATTGTTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
63249122 CCTCGATTTACAGAATTACCATTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
*
63249149 CCTCGATTTACAGAATTACCGTTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
*
63249176 CCTCGATTTATAGAATTACCATTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
* * **
63249203 CCTCAATTTATAGAATTACTGTTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
* *
63249230 TCTTGATTTACAGAATTACCATTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
*
63249257 CCTCGATTTACAGAATTACCGTTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
*
63249284 CCTCGATTTATAGAATTACCATTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
* * **
63249311 CCTCAATTTATAGAATTACTGTTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
* *
63249338 TCTTGATTTACAGAATTACCATTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
*
63249365 CCTCGATTTACAGAATTACCGTTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
*
63249392 CCTCGATTTATAGAATTACCATTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
* * **
63249419 CCTCAATTTATAGAATTACTGTTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
* *
63249446 TCTTGATTTACAGAATTACCATTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
*
63249473 CCTCGATTTACAAAATTAC
1 CCTCGATTTACAGAATTAC
63249492 TGAAATACCA
Statistics
Matches: 323, Mismatches: 47, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 323 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
CCTCGATTTACAGAATTACCATTTTAC
Found at i:63249141 original size:54 final size:54
Alignment explanation
Indices: 63249095--63249493 Score: 609
Period size: 54 Copynumber: 7.4 Consensus size: 54
63249085 ACCAAAGTAT
*
63249095 CCTCAATTTACAGAATTATTGTTTTACCCTCGATTTACAGAATTACCATTTTAC
1 CCTCAATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTAC
* * *
63249149 CCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTAC
1 CCTCAATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTAC
* * *
63249203 CCTCAATTTATAGAATTACTGTTTTACTCTTGATTTACAGAATTACCATTTTAC
1 CCTCAATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTAC
* * *
63249257 CCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTAC
1 CCTCAATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTAC
* * *
63249311 CCTCAATTTATAGAATTACTGTTTTACTCTTGATTTACAGAATTACCATTTTAC
1 CCTCAATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTAC
* * *
63249365 CCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTAC
1 CCTCAATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTAC
* * *
63249419 CCTCAATTTATAGAATTACTGTTTTACTCTTGATTTACAGAATTACCATTTTAC
1 CCTCAATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTAC
* *
63249473 CCTCGATTTACAAAATTACTG
1 CCTCAATTTACAGAATTACTG
63249494 AAATACCATT
Statistics
Matches: 308, Mismatches: 37, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 308 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (54 bp):
CCTCAATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTAC
Found at i:63249500 original size:27 final size:27
Alignment explanation
Indices: 63249470--63249555 Score: 75
Period size: 27 Copynumber: 3.2 Consensus size: 27
63249460 ATTACCATTT
**
63249470 TACCCTCGATTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACAAAAA
* * *
63249497 TACCATTGGTTTACAAAATTACAAAAA
1 TACCCTCGATTTACAAAATTACAAAAA
* ** *
63249524 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTACAAAATTACAAAAA
63249551 TACCC
1 TACCC
63249556 CTAGCTTGTA
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACAAAAA
Found at i:63249545 original size:108 final size:108
Alignment explanation
Indices: 63249095--63249491 Score: 749
Period size: 108 Copynumber: 3.7 Consensus size: 108
63249085 ACCAAAGTAT
* * * *
63249095 CCTCAATTTACAGAATTATTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAC
1 CCTCAATTTATAGAATTACTGTTTTACTCTTGATTTACAGAATTACCATTTTACCCTCGATTTAC
63249160 AGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTAC
66 AGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTAC
63249203 CCTCAATTTATAGAATTACTGTTTTACTCTTGATTTACAGAATTACCATTTTACCCTCGATTTAC
1 CCTCAATTTATAGAATTACTGTTTTACTCTTGATTTACAGAATTACCATTTTACCCTCGATTTAC
63249268 AGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTAC
66 AGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTAC
63249311 CCTCAATTTATAGAATTACTGTTTTACTCTTGATTTACAGAATTACCATTTTACCCTCGATTTAC
1 CCTCAATTTATAGAATTACTGTTTTACTCTTGATTTACAGAATTACCATTTTACCCTCGATTTAC
63249376 AGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTAC
66 AGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTAC
63249419 CCTCAATTTATAGAATTACTGTTTTACTCTTGATTTACAGAATTACCATTTTACCCTCGATTTAC
1 CCTCAATTTATAGAATTACTGTTTTACTCTTGATTTACAGAATTACCATTTTACCCTCGATTTAC
*
63249484 AAAATTAC
66 AGAATTAC
63249492 TGAAATACCA
Statistics
Matches: 284, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
108 284 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (108 bp):
CCTCAATTTATAGAATTACTGTTTTACTCTTGATTTACAGAATTACCATTTTACCCTCGATTTAC
AGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTAC
Done.