Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 196 of 297
Found at i:66477656 original size:129 final size:129
Alignment explanation
Indices: 66477426--66477684 Score: 500
Period size: 129 Copynumber: 2.0 Consensus size: 129
66477416 ATAATTACAT
66477426 ATTATTCAACAATAACCACAAAGCATAATATTTCATGATAATAATCAGCATCATATCATATAAAC
1 ATTATTCAACAATAACCACAAAGCATAATATTTCATGATAATAATCAGCATCATATCATATAAAC
* *
66477491 AACATTAAATTGCTTAAAATGGCAATTATGTTACTACATTTACACATGAACTTGCCTTGGCACC
66 AACATTAAATTGCTTAAAATGACAATTATGTTACTACATTTACACATGAACTTACCTTGGCACC
66477555 ATTATTCAACAATAACCACAAAGCATAATATTTCATGATAATAATCAGCATCATATCATATAAAC
1 ATTATTCAACAATAACCACAAAGCATAATATTTCATGATAATAATCAGCATCATATCATATAAAC
66477620 AACATTAAATTGCTTAAAATGACAATTATGTTACTACATTTACACATGAACTTACCTTGGCACC
66 AACATTAAATTGCTTAAAATGACAATTATGTTACTACATTTACACATGAACTTACCTTGGCACC
66477684 A
1 A
66477685 AAATATAAAG
Statistics
Matches: 128, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
129 128 1.00
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (129 bp):
ATTATTCAACAATAACCACAAAGCATAATATTTCATGATAATAATCAGCATCATATCATATAAAC
AACATTAAATTGCTTAAAATGACAATTATGTTACTACATTTACACATGAACTTACCTTGGCACC
Found at i:66477854 original size:30 final size:30
Alignment explanation
Indices: 66477820--66477879 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
66477810 ATTTAATACG
66477820 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
66477850 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
66477880 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:66480852 original size:12 final size:12
Alignment explanation
Indices: 66480835--66480861 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
66480825 TGGAGTATGT
66480835 GAAAAATGAATC
1 GAAAAATGAATC
66480847 GAAAAATGAATC
1 GAAAAATGAATC
66480859 GAA
1 GAA
66480862 TTTGATGCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.07, G:0.19, T:0.15
Consensus pattern (12 bp):
GAAAAATGAATC
Found at i:66483278 original size:27 final size:27
Alignment explanation
Indices: 66483237--66483409 Score: 238
Period size: 27 Copynumber: 6.4 Consensus size: 27
66483227 TGGATAAGTT
66483237 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
** *
66483264 GTAGAATTATTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
66483291 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
66483318 ATAGAATTACCGAAATACCCTTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
66483345 TTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
66483372 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
66483399 GTAAAATTACC
1 GTAGAATTACC
66483410 ATTTTGCCCC
Statistics
Matches: 127, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:66492201 original size:48 final size:48
Alignment explanation
Indices: 66492130--66492427 Score: 497
Period size: 48 Copynumber: 6.2 Consensus size: 48
66492120 CAAGATAAAT
* * *
66492130 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
66492178 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
66492226 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
**
66492274 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
66492322 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
66492370 ATATGTATATGTTGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
66492418 ATGTGTATAT
1 ATATGTATAT
66492428 ATTGTGGCCG
Statistics
Matches: 233, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 233 1.00
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:66492624 original size:37 final size:37
Alignment explanation
Indices: 66492560--66492706 Score: 213
Period size: 37 Copynumber: 4.0 Consensus size: 37
66492550 GGAAATATAT
* * * *
66492560 TCCGGATAAGTCCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
* *
66492597 TCCGGGTAAGACCCGATAACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
* *
66492634 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
*
66492671 TCCGGGTAAGACCCGATAACTACGTGTGGGGATTAT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTAT
66492707 TCGAGCTAAA
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
Found at i:66492681 original size:74 final size:74
Alignment explanation
Indices: 66492560--66492704 Score: 236
Period size: 74 Copynumber: 2.0 Consensus size: 74
66492550 GGAAATATAT
* * *
66492560 TCCGGATAAGTCCTGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTATGTGTG
1 TCCGGATAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACGTGTG
66492625 GAGATTTTG
66 GAGATTTTG
* *
66492634 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATAACTACGTGTG
1 TCCGGATAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACGTGTG
*
66492699 GGGATT
66 GAGATT
66492705 ATTCGAGCTA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 65 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (74 bp):
TCCGGATAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACGTGTG
GAGATTTTG
Found at i:66494796 original size:27 final size:27
Alignment explanation
Indices: 66494754--66494931 Score: 266
Period size: 27 Copynumber: 6.6 Consensus size: 27
66494744 CAATGGGTCC
66494754 GTAGGGTAGAATTACCGAAATACCCCT
1 GTAGGGTAGAATTACCGAAATACCCCT
*
66494781 GTAAGGTAGAATTACCGAAATACCCCT
1 GTAGGGTAGAATTACCGAAATACCCCT
**
66494808 GTAGGGTAGAATTATTGAAATACCCCT
1 GTAGGGTAGAATTACCGAAATACCCCT
* *
66494835 GTAGGGTAGAATTACTGAAATAACCCT
1 GTAGGGTAGAATTACCGAAATACCCCT
*
66494862 GTAGGGTAGAATTATCGAAATACCCCT
1 GTAGGGTAGAATTACCGAAATACCCCT
* *
66494889 GTAGGGTAGAATTACCGAGATACCCTT
1 GTAGGGTAGAATTACCGAAATACCCCT
* *
66494916 ATAGGGTAAAATTACC
1 GTAGGGTAGAATTACC
66494932 ATTTTTCCCC
Statistics
Matches: 137, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 137 1.00
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
GTAGGGTAGAATTACCGAAATACCCCT
Found at i:66495616 original size:27 final size:26
Alignment explanation
Indices: 66495572--66495623 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
66495562 CTCGCTGCAA
*
66495572 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
66495599 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
66495624 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:66500104 original size:24 final size:23
Alignment explanation
Indices: 66500058--66500102 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
66500048 AAAGAAAGAT
66500058 AGAAATTTTTTTACGTTTTTTTC
1 AGAAATTTTTTTACGTTTTTTTC
66500081 AGAAATTTTTTTACGTTTTTTT
1 AGAAATTTTTTTACGTTTTTTT
66500103 TCCGATTCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.22, C:0.07, G:0.09, T:0.62
Consensus pattern (23 bp):
AGAAATTTTTTTACGTTTTTTTC
Found at i:66505990 original size:40 final size:40
Alignment explanation
Indices: 66505946--66506033 Score: 167
Period size: 40 Copynumber: 2.2 Consensus size: 40
66505936 TAAATGACTT
*
66505946 AAATAATAAATAAGAGAGACTTAAAGAGCAATTTTTCCCA
1 AAATAATAAATAAGAGAGACTTAAAGAGCAATTTTGCCCA
66505986 AAATAATAAATAAGAGAGACTTAAAGAGCAATTTTGCCCA
1 AAATAATAAATAAGAGAGACTTAAAGAGCAATTTTGCCCA
66506026 AAATAATA
1 AAATAATA
66506034 TGGGTTGGAC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.52, C:0.11, G:0.12, T:0.24
Consensus pattern (40 bp):
AAATAATAAATAAGAGAGACTTAAAGAGCAATTTTGCCCA
Found at i:66507114 original size:47 final size:46
Alignment explanation
Indices: 66507045--66507145 Score: 130
Period size: 47 Copynumber: 2.2 Consensus size: 46
66507035 TGTTCCCGTA
** * * *
66507045 TAAGACCATGTCTGGGACATGGCATCAGTGTGATATGAGCTTCTATG
1 TAAGACCACATCTGGGACATGGCATCAATGTGATATGAGATCCT-TG
* *
66507092 TAAGACCACATCTGGGATATGGCATCAATGTGATATGTGATCCTTG
1 TAAGACCACATCTGGGACATGGCATCAATGTGATATGAGATCCTTG
66507138 TAAGACCA
1 TAAGACCA
66507146 TGGCTGGGCT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
46 10 0.21
47 37 0.79
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (46 bp):
TAAGACCACATCTGGGACATGGCATCAATGTGATATGAGATCCTTG
Found at i:66511871 original size:30 final size:30
Alignment explanation
Indices: 66511813--66511871 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
66511803 TTTACGAGCC
* *
66511813 TAGGGGCCAAAGTGCAAATATGTGAAAGTT
1 TAGGGGCCAAAATGCAAATATGTAAAAGTT
* * *
66511843 TAGGGGTCAAAATGTAAATTTGTAAAAGT
1 TAGGGGCCAAAATGCAAATATGTAAAAGT
66511872 ATGATTTTTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.39, C:0.07, G:0.27, T:0.27
Consensus pattern (30 bp):
TAGGGGCCAAAATGCAAATATGTAAAAGTT
Found at i:66512123 original size:18 final size:20
Alignment explanation
Indices: 66512087--66512133 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
66512077 TTGTAAGTAT
66512087 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
66512107 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
66512126 ATGATATA
1 AT-ATATA
66512134 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:66512661 original size:50 final size:50
Alignment explanation
Indices: 66512487--66512874 Score: 417
Period size: 50 Copynumber: 7.7 Consensus size: 50
66512477 GTGAGCCACG
* *
66512487 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGTCACA
* ** * * * *
66512536 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCTG-TTAACTT-CGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAAG-TCACA
* * * **
66512587 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTTATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGTCACA
* * * *
66512637 TGTGTAGTACTAAATGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGTCACA
* * * *
66512687 TGTGTAGTACTACGTGCAGGCTACTACGTGTACCTG-TTAACTT-TGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAAG-TCACA
* * *
66512738 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGTCACA
* * *
66512788 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGTCACA
* *
66512838 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
66512875 GAGCTTCGAT
Statistics
Matches: 278, Mismatches: 50, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
48 2 0.01
49 34 0.12
50 165 0.59
51 75 0.27
52 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAAGTCACA
Found at i:66512871 original size:151 final size:151
Alignment explanation
Indices: 66512483--66512871 Score: 672
Period size: 151 Copynumber: 2.6 Consensus size: 151
66512473 TGTTGTGAGC
66512483 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TAGGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACT
* *
66512547 AAGTGCAGGCTACTATGCATACCTGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACT
66 AAGTGCAGGCTACTATGCGTACCTGTTAACTTCGATCACATGTGTAGTACTAAGTGCAGGCTACT
66512612 ACGTGTATCAGATGGTTAAGT
131 ACGTGTATCAGATGGTTAAGT
* * *
66512633 TATGTGTGTAGTACTAAATGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACT
* * * *
66512698 ACGTGCAGGCTACTACGTGTACCTGTTAACTTTGATCACATGTGTAGTACTAAGTGCAGGCTACT
66 AAGTGCAGGCTACTATGCGTACCTGTTAACTTCGATCACATGTGTAGTACTAAGTGCAGGCTACT
66512763 ACGTGTATCAGATGGTTAAGT
131 ACGTGTATCAGATGGTTAAGT
* *
66512784 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACT
66512849 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
66512872 AGAGAGCTTC
Statistics
Matches: 221, Mismatches: 17, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
150 41 0.19
151 180 0.81
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (151 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCTGTTAACTTCGATCACATGTGTAGTACTAAGTGCAGGCTACT
ACGTGTATCAGATGGTTAAGT
Found at i:66513095 original size:16 final size:16
Alignment explanation
Indices: 66513074--66513105 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
66513064 AGAATGGAGT
66513074 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
66513090 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
66513106 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:66514405 original size:45 final size:45
Alignment explanation
Indices: 66514341--66514430 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
66514331 GTGAATAAGC
*
66514341 ATGGGAGAGAATTAAGGACAACATAAGGCTTGGAAAATAGCCTAA
1 ATGGGAGAGAATTAAGGACAACATAAAGCTTGGAAAATAGCCTAA
*
66514386 ATGGGAGAGAATTAAGGACAACATAAAGCTTGGAGAATAGCCTAA
1 ATGGGAGAGAATTAAGGACAACATAAAGCTTGGAAAATAGCCTAA
66514431 GTGTTGGCTA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.44, C:0.11, G:0.27, T:0.18
Consensus pattern (45 bp):
ATGGGAGAGAATTAAGGACAACATAAAGCTTGGAAAATAGCCTAA
Found at i:66515852 original size:70 final size:70
Alignment explanation
Indices: 66515719--66515853 Score: 209
Period size: 70 Copynumber: 1.9 Consensus size: 70
66515709 TAGTTTATTA
* * * *
66515719 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTG
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
66515784 CTTAG
66 CTTAG
*
66515789 CTAATTAATATGCTGTTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGAC-AAAATCATGGT
66515853 G
65 G
66515854 TTATGTGCTA
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
69 27 0.46
70 32 0.54
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
CTTAG
Found at i:66516976 original size:45 final size:45
Alignment explanation
Indices: 66516914--66517310 Score: 615
Period size: 45 Copynumber: 8.9 Consensus size: 45
66516904 TGGATTTGAT
* * *
66516914 TATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCAGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* *
66516959 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
*
66517004 TATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
66517049 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
66517094 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
66517139 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
*
66517184 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
** * *
66517229 TATTCGGG-CTTTCGAGCCTAGCAAACTATAATGCTGGTGAAATGA-
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGAT-AC
* * *
66517274 TA-TCGAGCC-TCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
66517311 ATGAATTCGA
Statistics
Matches: 330, Mismatches: 19, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
42 10 0.03
43 12 0.04
44 9 0.03
45 298 0.90
46 1 0.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:66520146 original size:43 final size:43
Alignment explanation
Indices: 66519988--66520145 Score: 167
Period size: 43 Copynumber: 3.7 Consensus size: 43
66519978 CACGTCCATT
* * *
66519988 ATGAACTTGGACCACTCAACGAGCTC-AGATGCTCACATCTATA
1 ATGAACTCGGACCACTCAACGAGCTCGA-ATGCTCACATATATC
** * *
66520031 ATGAACTCAAACCACTCAAGGAGCTCGGATGC-CACATATATC
1 ATGAACTCGGACCACTCAACGAGCTCGAATGCTCACATATATC
* * * * * *
66520073 ACGAACTTGGACCACTCAACAAGTTCGAATTCTCACCTATATC
1 ATGAACTCGGACCACTCAACGAGCTCGAATGCTCACATATATC
*
66520116 ATGAACTCGGACCGCTCAACGAGCTCGAAT
1 ATGAACTCGGACCACTCAACGAGCTCGAAT
66520146 TTCTTAATTC
Statistics
Matches: 91, Mismatches: 22, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
42 31 0.34
43 60 0.66
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (43 bp):
ATGAACTCGGACCACTCAACGAGCTCGAATGCTCACATATATC
Found at i:66523615 original size:8 final size:9
Alignment explanation
Indices: 66523592--66523626 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
66523582 TTTTTCTATC
*
66523592 TCTTTTTCT
1 TCTTTTTCA
66523601 TCTTTTTCA
1 TCTTTTTCA
66523610 TCTTTTTCA
1 TCTTTTTCA
66523619 TCTTTTTC
1 TCTTTTTC
66523627 TTCTCTCACT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.06, C:0.23, G:0.00, T:0.71
Consensus pattern (9 bp):
TCTTTTTCA
Found at i:66531952 original size:39 final size:39
Alignment explanation
Indices: 66531898--66531974 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
66531888 ATGTAAAACA
66531898 CATATTAATGATGTTCAAACCATGACATAATTAAAGACT
1 CATATTAATGATGTTCAAACCATGACATAATTAAAGACT
*
66531937 CATATTAATGATGTTCAAACTATGACATAATTAAAGAC
1 CATATTAATGATGTTCAAACCATGACATAATTAAAGAC
66531975 ACAAACTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.31
Consensus pattern (39 bp):
CATATTAATGATGTTCAAACCATGACATAATTAAAGACT
Found at i:66535461 original size:56 final size:56
Alignment explanation
Indices: 66535375--66535491 Score: 234
Period size: 56 Copynumber: 2.1 Consensus size: 56
66535365 ATATGGATGT
66535375 ATGCTAATTACTCGGTAAGTTTACTTTCCAGTTATTTGAGCTTACTAAGCATGAAA
1 ATGCTAATTACTCGGTAAGTTTACTTTCCAGTTATTTGAGCTTACTAAGCATGAAA
66535431 ATGCTAATTACTCGGTAAGTTTACTTTCCAGTTATTTGAGCTTACTAAGCATGAAA
1 ATGCTAATTACTCGGTAAGTTTACTTTCCAGTTATTTGAGCTTACTAAGCATGAAA
66535487 ATGCT
1 ATGCT
66535492 TACCCCCTCT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (56 bp):
ATGCTAATTACTCGGTAAGTTTACTTTCCAGTTATTTGAGCTTACTAAGCATGAAA
Found at i:66536936 original size:46 final size:46
Alignment explanation
Indices: 66536869--66537044 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
66536859 TATTTAGGCA
66536869 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
66536915 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
*
66536962 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66537008 CCCGAGCTCGTTGAGTTGAGTCCGATTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66537045 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66537022 original size:93 final size:93
Alignment explanation
Indices: 66536863--66537032 Score: 313
Period size: 93 Copynumber: 1.8 Consensus size: 93
66536853 CTAGGATATT
*
66536863 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTG
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTG
66536928 AGTTGAGTCCGAGTTCGAGAGATGTAAC
66 AGTTGAGTCCGAGTTCGAGAGATGTAAC
* *
66536956 TAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTG
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTG
66537021 AGTTGAGTCCGA
66 AGTTGAGTCCGA
66537033 TTTCACTTAT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTG
AGTTGAGTCCGAGTTCGAGAGATGTAAC
Found at i:66540032 original size:14 final size:15
Alignment explanation
Indices: 66539983--66540032 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
66539973 GTATCTTGGG
*
66539983 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
66539998 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
66540013 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
66540027 TTTCTT
1 TTTCTT
66540033 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:66542468 original size:46 final size:46
Alignment explanation
Indices: 66542415--66542590 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
66542405 TATTTAGGCA
66542415 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
66542461 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
*
66542508 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66542554 CCCGAGCTCGTTGAGTTGAGTCCGATTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66542591 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66542568 original size:93 final size:93
Alignment explanation
Indices: 66542409--66542578 Score: 313
Period size: 93 Copynumber: 1.8 Consensus size: 93
66542399 CTAGGATATT
*
66542409 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTG
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTG
66542474 AGTTGAGTCCGAGTTCGAGAGATGTAAC
66 AGTTGAGTCCGAGTTCGAGAGATGTAAC
* *
66542502 TAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTG
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTG
66542567 AGTTGAGTCCGA
66 AGTTGAGTCCGA
66542579 TTTCACTTAT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTG
AGTTGAGTCCGAGTTCGAGAGATGTAAC
Found at i:66553172 original size:47 final size:47
Alignment explanation
Indices: 66553118--66554110 Score: 1887
Period size: 47 Copynumber: 21.1 Consensus size: 47
66553108 TTAGGATTTT
** *
66553118 ATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
66553165 ATGTGATGAATGTGAACATGCATTTATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
66553212 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
66553259 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
66553306 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
66553353 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
66553400 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
66553447 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
66553494 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
66553541 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
66553588 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
66553635 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
66553682 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
66553729 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
66553776 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
66553823 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
66553870 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
66553917 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
66553964 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
66554011 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
66554058 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
66554105 ATGTGA
1 ATGTGA
66554111 AATATGTATG
Statistics
Matches: 931, Mismatches: 15, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 931 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:66554066 original size:25 final size:25
Alignment explanation
Indices: 66553991--66554066 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
66553981 ATGCATATAT
66553991 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
66554016 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
66554038 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
66554063 GTGA
1 GTGA
66554067 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:66554143 original size:48 final size:48
Alignment explanation
Indices: 66554080--66554261 Score: 285
Period size: 48 Copynumber: 3.8 Consensus size: 48
66554070 TGAACATGCA
*
66554080 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
66554128 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
66554176 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
66554226 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
66554262 ATAGGCGATG
Statistics
Matches: 123, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
47 1 0.01
48 77 0.63
49 4 0.03
50 40 0.33
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:66554239 original size:98 final size:96
Alignment explanation
Indices: 66554081--66554261 Score: 292
Period size: 98 Copynumber: 1.9 Consensus size: 96
66554071 GAACATGCAT
*
66554081 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
66554146 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
* *
66554177 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGAAATGTATATGTGGTAAAGC
*
66554241 CGAATGGCTAGTGTGAAATAT
63 CGAATGGCTAATGTGAAATAT
66554262 ATAGGCGATG
Statistics
Matches: 78, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
95 1 0.01
96 26 0.33
97 2 0.03
98 49 0.63
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:66554460 original size:37 final size:37
Alignment explanation
Indices: 66554410--66554481 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
66554400 GGAAATATAT
*
66554410 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
*
66554447 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
66554482 CGTCTGAGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:66555496 original size:18 final size:17
Alignment explanation
Indices: 66555457--66555500 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
66555447 TGGCCCAATA
*
66555457 CAGTAACAAAAAATAGTT
1 CAGTAAC-AAAAATAGTG
*
66555475 CAGTAACAATAATCAGTG
1 CAGTAACAAAAAT-AGTG
66555493 CAGTAACA
1 CAGTAACA
66555501 GAATACAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.50, C:0.16, G:0.14, T:0.20
Consensus pattern (17 bp):
CAGTAACAAAAATAGTG
Found at i:66555865 original size:27 final size:27
Alignment explanation
Indices: 66555821--66555919 Score: 139
Period size: 27 Copynumber: 3.7 Consensus size: 27
66555811 TACATCACAT
* *
66555821 AGGGCAAAACAGTTATTTTACC-TCAAA
1 AGGGCAAAACAGTCATTTTACCAT-ATA
66555848 AGGGCAAAACTA-TCATTTTACCATATA
1 AGGGCAAAAC-AGTCATTTTACCATATA
66555875 AGGGCAAAACAGTCATTTTACCATATA
1 AGGGCAAAACAGTCATTTTACCATATA
*
66555902 AGGGCAAAACAATCATTT
1 AGGGCAAAACAGTCATTT
66555920 AATTAATTTG
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
26 1 0.02
27 63 0.95
28 2 0.03
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.26
Consensus pattern (27 bp):
AGGGCAAAACAGTCATTTTACCATATA
Found at i:66556077 original size:18 final size:19
Alignment explanation
Indices: 66556037--66556077 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
66556027 CATAATGAGG
66556037 GCCCATGTGGGCCCACACA
1 GCCCATGTGGGCCCACACA
* *
66556056 -CCCATGT-GGCCTACATA
1 GCCCATGTGGGCCCACACA
66556073 GCCCA
1 GCCCA
66556078 GAAATGGCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.22, C:0.41, G:0.22, T:0.15
Consensus pattern (19 bp):
GCCCATGTGGGCCCACACA
Found at i:66560036 original size:27 final size:27
Alignment explanation
Indices: 66559998--66560066 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
66559988 TAGAGCAAAT
*
66559998 CAGTCATTTTACCTTACAGGGGTATTA
1 CAGTCATTTTACCCTACAGGGGTATTA
* * *
66560025 CAGTCATTTTACCCTATATGGGTATTT
1 CAGTCATTTTACCCTACAGGGGTATTA
**
66560052 TTGTCATTTTACCCT
1 CAGTCATTTTACCCT
66560067 GATACGAGCA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.22, C:0.20, G:0.14, T:0.43
Consensus pattern (27 bp):
CAGTCATTTTACCCTACAGGGGTATTA
Found at i:66562098 original size:14 final size:13
Alignment explanation
Indices: 66562079--66562113 Score: 61
Period size: 13 Copynumber: 2.6 Consensus size: 13
66562069 TATACAAGTC
66562079 AAAAAAAATTCGA
1 AAAAAAAATTCGA
66562092 AAAAAAAATTCGA
1 AAAAAAAATTCGA
66562105 AAAGAAAAA
1 AAA-AAAAA
66562114 AAAATCTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 16 0.76
14 5 0.24
ACGTcount: A:0.74, C:0.06, G:0.09, T:0.11
Consensus pattern (13 bp):
AAAAAAAATTCGA
Found at i:66562099 original size:17 final size:18
Alignment explanation
Indices: 66562090--66562129 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
66562080 AAAAAAATTC
66562090 GAAAAAAAAAT-TCGAAAA
1 GAAAAAAAAATCT-GAAAA
66562108 GAAAAAAAAATCTGAAAA
1 GAAAAAAAAATCTGAAAA
66562126 -AAAA
1 GAAAA
66562130 GTGTTTAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.19
18 16 0.76
19 1 0.05
ACGTcount: A:0.75, C:0.05, G:0.10, T:0.10
Consensus pattern (18 bp):
GAAAAAAAAATCTGAAAA
Found at i:66566137 original size:12 final size:13
Alignment explanation
Indices: 66566113--66566144 Score: 57
Period size: 12 Copynumber: 2.5 Consensus size: 13
66566103 TGTGAGTTTC
66566113 GCTTATGATATGT
1 GCTTATGATATGT
66566126 GCTTAT-ATATGT
1 GCTTATGATATGT
66566138 GCTTATG
1 GCTTATG
66566145 GTGTATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.67
13 6 0.33
ACGTcount: A:0.22, C:0.09, G:0.22, T:0.47
Consensus pattern (13 bp):
GCTTATGATATGT
Found at i:66567257 original size:432 final size:432
Alignment explanation
Indices: 66566446--66567314 Score: 1702
Period size: 432 Copynumber: 2.0 Consensus size: 432
66566436 GGCATAATTT
66566446 GTTTATGTTTTGGGCTGCCTTTTTGTGTATGAATTGGTGCCACATTTTGAGTTTGCAAGGTAGAC
1 GTTTATGTTTTGGGCTGCCTTTTTGTGTATGAATTGGTGCCACATTTTGAGTTTGCAAGGTAGAC
66566511 CATTATGGGTGGTGAAATTGGCCTTGCAAATGGCCTATTTACATTTACACAGTTGAGCACACGGG
66 CATTATGGGTGGTGAAATTGGCCTTGCAAATGGCCTATTTACATTTACACAGTTGAGCACACGGG
*
66566576 CTTGTTGTTCGACCGTGTGTCCCCTGGAAATAATTAGAAATTCAAGTTAGCCTTGTACACGGCCT
131 CTTGTTGTTCGACCGTGTGTCCCCTGGAAATAATTAGAAATTCAAGTTAGCCTTGCACACGGCCT
66566641 AGACACACATGTGTGTGGTCGGCCATGTGGCCAAGTTAGTATACCCACTAGTTTTCACACTGCCT
196 AGACACACATGTGTGTGGTCGGCCATGTGGCCAAGTTAGTATACCCACTAGTTTTCACACTGCCT
66566706 GGCACACGGACATGTCCTCGGCCATGTGAGGCAAGTCAGTATGTATGCCCTGTTTTCACACCACA
261 GGCACACGGACATGTCCTCGGCCATGTGAGGCAAGTCAGTATGTATGCCCTGTTTTCACACCACA
*
66566771 CAGGCGTGTCTGATGGCCGTATGAGGCACACGGCCTATTCACACAGGCGTGTGACCTCTGTATTC
326 CAGGCGTGTCTGATGGCCGTATGAGGCACACGGCCTATTCACACAAGCGTGTGACCTCTGTATTC
66566836 AAGAAAATTTTCTAAGTTTCCCAAAGTTTTCAAATGTTATCA
391 AAGAAAATTTTCTAAGTTTCCCAAAGTTTTCAAATGTTATCA
66566878 GTTTATGTTTTGGGCTGCCTTTTTGTGTATGAATTGGTGCCACATTTTGAGTTTGCAAGGTAGAC
1 GTTTATGTTTTGGGCTGCCTTTTTGTGTATGAATTGGTGCCACATTTTGAGTTTGCAAGGTAGAC
66566943 CATTATGGGTGGTGAAATTGGCCTTGCAAATGGCCTATTTACATTTACACAGTTGAGCACACGGG
66 CATTATGGGTGGTGAAATTGGCCTTGCAAATGGCCTATTTACATTTACACAGTTGAGCACACGGG
66567008 CTTGTTGTTCGACCGTGTGTCCCCTGGAAATAATTAGAAATTCAAGTTAGCCTTGCACACGGCCT
131 CTTGTTGTTCGACCGTGTGTCCCCTGGAAATAATTAGAAATTCAAGTTAGCCTTGCACACGGCCT
66567073 AGACACACATGTGTGTGGTCGGCCATGTGGCCAAGTTAGTATACCCACTAGTTTTCACACTGCCT
196 AGACACACATGTGTGTGGTCGGCCATGTGGCCAAGTTAGTATACCCACTAGTTTTCACACTGCCT
66567138 GGCACACGGACATGTCCTCGGCCATGTGAGGCAAGTCAGTATGTATGCCCTGTTTTCACACCACA
261 GGCACACGGACATGTCCTCGGCCATGTGAGGCAAGTCAGTATGTATGCCCTGTTTTCACACCACA
* *
66567203 CAGGTGTGTCTGATGGCCGTATGAGGCACACGGCCTATTCACACAAGTGTGTGACCTCTGTATTC
326 CAGGCGTGTCTGATGGCCGTATGAGGCACACGGCCTATTCACACAAGCGTGTGACCTCTGTATTC
66567268 AAGAAAATTTTCTAAGTTTCCCAAAGTTTTCAAATGTTATCA
391 AAGAAAATTTTCTAAGTTTCCCAAAGTTTTCAAATGTTATCA
66567310 GTTTA
1 GTTTA
66567315 GTCCCGAACC
Statistics
Matches: 433, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
432 433 1.00
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (432 bp):
GTTTATGTTTTGGGCTGCCTTTTTGTGTATGAATTGGTGCCACATTTTGAGTTTGCAAGGTAGAC
CATTATGGGTGGTGAAATTGGCCTTGCAAATGGCCTATTTACATTTACACAGTTGAGCACACGGG
CTTGTTGTTCGACCGTGTGTCCCCTGGAAATAATTAGAAATTCAAGTTAGCCTTGCACACGGCCT
AGACACACATGTGTGTGGTCGGCCATGTGGCCAAGTTAGTATACCCACTAGTTTTCACACTGCCT
GGCACACGGACATGTCCTCGGCCATGTGAGGCAAGTCAGTATGTATGCCCTGTTTTCACACCACA
CAGGCGTGTCTGATGGCCGTATGAGGCACACGGCCTATTCACACAAGCGTGTGACCTCTGTATTC
AAGAAAATTTTCTAAGTTTCCCAAAGTTTTCAAATGTTATCA
Found at i:66569078 original size:45 final size:45
Alignment explanation
Indices: 66569014--66569104 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
66569004 AGAAGATTAA
66569014 TGTAATTCTTTTAGTTATTTTACTTTATTTACCAAATGACCATTT
1 TGTAATTCTTTTAGTTATTTTACTTTATTTACCAAATGACCATTT
66569059 TGTAATTCTTTTAGTTATTTTACTTTATTTACCAAATGACCATTT
1 TGTAATTCTTTTAGTTATTTTACTTTATTTACCAAATGACCATTT
66569104 T
1 T
66569105 ACCCTTCCCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.26, C:0.13, G:0.07, T:0.54
Consensus pattern (45 bp):
TGTAATTCTTTTAGTTATTTTACTTTATTTACCAAATGACCATTT
Found at i:66569771 original size:23 final size:23
Alignment explanation
Indices: 66569741--66569788 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
66569731 CCACTTATAG
66569741 ACATAACAGACATCTCAAAATTA
1 ACATAACAGACATCTCAAAATTA
66569764 ACATAACAGACATCTCAAAATTA
1 ACATAACAGACATCTCAAAATTA
66569787 AC
1 AC
66569789 TCTAAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.52, C:0.23, G:0.04, T:0.21
Consensus pattern (23 bp):
ACATAACAGACATCTCAAAATTA
Found at i:66572728 original size:42 final size:42
Alignment explanation
Indices: 66572662--66572761 Score: 128
Period size: 42 Copynumber: 2.4 Consensus size: 42
66572652 GCTTAAACCA
* * * * *
66572662 TGTAACTCACTAAGTTAGGTCACACAGTTGTGTCGCAGGCCG
1 TGTAACTCACTGACTTAGGACACACAGCTGTGCCGCAGGCCG
* * *
66572704 TGTAACTCACTGACTTATGACACACGGCTGTGCCGTAGGCCG
1 TGTAACTCACTGACTTAGGACACACAGCTGTGCCGCAGGCCG
66572746 TGTAACTCACTGACTT
1 TGTAACTCACTGACTT
66572762 GTGATAATAA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (42 bp):
TGTAACTCACTGACTTAGGACACACAGCTGTGCCGCAGGCCG
Found at i:66574982 original size:24 final size:24
Alignment explanation
Indices: 66574955--66575005 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
66574945 GCCTAGCCTC
66574955 TTTTAATAA-CTGGGGCAAAGCCCT
1 TTTTAATAATCTGGGG-AAAGCCCT
**
66574979 TTTTGGTAATCTGGGGAAAGCCCT
1 TTTTAATAATCTGGGGAAAGCCCT
66575003 TTT
1 TTT
66575006 CACACTTCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 18 0.75
25 6 0.25
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (24 bp):
TTTTAATAATCTGGGGAAAGCCCT
Found at i:66575270 original size:27 final size:27
Alignment explanation
Indices: 66575209--66575592 Score: 437
Period size: 27 Copynumber: 14.3 Consensus size: 27
66575199 GGGGCAAAAT
* * * *
66575209 GGTAATTTTACCCTA-AAGGTTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
66575235 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
66575262 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
66575289 GGTAATTCTACCTTATAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
66575316 AATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
66575343 GGCAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
66575370 GGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
66575397 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
66575424 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
66575451 GATAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
66575478 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
66575505 GATAATTCTACCTTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
66575532 AGTAATTCTACCCAACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
66575559 AATAATTCTACCCTACATGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
66575586 GGTAATT
1 GGTAATT
66575593 TTACAAACCA
Statistics
Matches: 306, Mismatches: 51, Indels: 1
0.85 0.14 0.00
Matches are distributed among these distances:
26 14 0.05
27 292 0.95
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.38
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:66575607 original size:27 final size:26
Alignment explanation
Indices: 66575523--66575644 Score: 109
Period size: 27 Copynumber: 4.5 Consensus size: 26
66575513 TACCTTATAG
* * *
66575523 GGGTATTTTAGTAATTCTACCCAACAA
1 GGGTATTTTGGTAATTTTA-CAAACAA
*** * ** *
66575550 GGGTATTTCAATAATTCTACCCTACAT
1 GGGTATTTTGGTAATTTTA-CAAACAA
66575577 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAA-CAA
*
66575604 GGGTATTTTGGTAATTTTACAAACTA
1 GGGTATTTTGGTAATTTTACAAACAA
66575630 GAGGTATTTTGGTAA
1 G-GGTATTTTGGTAA
66575645 CTTTGGTAAA
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.06
27 76 0.94
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACAA
Found at i:66575663 original size:27 final size:27
Alignment explanation
Indices: 66575579--66575664 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 27
66575569 CCCTACATGG
* * *
66575579 GTATTTTGGTAATTTTACAAACCA-AGG
1 GTATTTTGGTAATTTGACAAACTAGA-A
* *
66575606 GTATTTTGGTAATTTTACAAACTAGAG
1 GTATTTTGGTAATTTGACAAACTAGAA
**
66575633 GTATTTTGGTAACTTTGGTAAACTA-AA
1 GTATTTTGGTAA-TTTGACAAACTAGAA
66575660 GTATT
1 GTATT
66575665 CTAAACAGGG
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
27 42 0.81
28 10 0.19
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
GTATTTTGGTAATTTGACAAACTAGAA
Found at i:66576686 original size:27 final size:27
Alignment explanation
Indices: 66576649--66576766 Score: 157
Period size: 27 Copynumber: 4.4 Consensus size: 27
66576639 GGATAAGTTA
66576649 TAGAATTACCGAAATACCCCTGT-AGG
1 TAGAATTACCGAAATACCCCTGTAAGG
*
66576675 ATAGAATTACCGAAATACCCTTGTAAGG
1 -TAGAATTACCGAAATACCCCTGTAAGG
* *
66576703 TAGAAATACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAAGG
* * *
66576730 TAGAATTACCGAGATACCCTTGTGAGG
1 TAGAATTACCGAAATACCCCTGTAAGG
*
66576757 TAAAATTACC
1 TAGAATTACC
66576767 ATTTTGCCCC
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 77 0.96
28 3 0.04
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.24
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCCTGTAAGG
Found at i:66576777 original size:54 final size:54
Alignment explanation
Indices: 66576649--66576762 Score: 185
Period size: 54 Copynumber: 2.1 Consensus size: 54
66576639 GGATAAGTTA
*
66576649 TAGAATTACCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAAGG
1 TAGAAATACCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAAGG
* * *
66576703 TAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGAGG
1 TAGAAATACCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAAGG
66576757 TA-AAAT
1 TAGAAAT
66576763 TACCATTTTG
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
53 4 0.07
54 52 0.93
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (54 bp):
TAGAAATACCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAAGG
Found at i:66588822 original size:98 final size:98
Alignment explanation
Indices: 66588683--66589042 Score: 686
Period size: 98 Copynumber: 3.7 Consensus size: 98
66588673 CGCTACAATT
* *
66588683 TGGTGGCCTCGCCACATATATCTGT-TCTGGTGACTTTGTCACAATATCTGGCAGCCTCGCTGCA
1 TGGTGGCCTAGCCACA-ATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGCA
66588747 ATCTGATGGTCTCGCCACATATATATATCTGTTA
65 ATCTGATGGTCTCGCCACATATATATATCTGTTA
66588781 TGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGCAA
1 TGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGCAA
66588846 TCTGATGGTCTCGCCACATATATATATCTGTTA
66 TCTGATGGTCTCGCCACATATATATATCTGTTA
66588879 TGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGCAA
1 TGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGCAA
66588944 TCTGATGGTCTCGCCACATATATATATCTGTTA
66 TCTGATGGTCTCGCCACATATATATATCTGTTA
66588977 TGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGCAA
1 TGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGCAA
66589042 T
66 T
66589043 TTCTATTATG
Statistics
Matches: 259, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
97 8 0.03
98 251 0.97
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.32
Consensus pattern (98 bp):
TGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGCAA
TCTGATGGTCTCGCCACATATATATATCTGTTA
Found at i:66598077 original size:100 final size:100
Alignment explanation
Indices: 66597904--66598309 Score: 776
Period size: 100 Copynumber: 4.1 Consensus size: 100
66597894 TTCCTATCAA
* * * *
66597904 AATTAACAAAAATTTCATGATTTTCATCACCAAAATTGTCCACTATGAAATAAATTGTTCTATTT
1 AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
66597969 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
66 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
66598004 AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
1 AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
66598069 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
66 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
66598104 AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
1 AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
66598169 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
66 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
66598204 AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
1 AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
66598269 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
66 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
66598304 AATTAA
1 AATTAA
66598310 CTCTTTTAAC
Statistics
Matches: 302, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 302 1.00
ACGTcount: A:0.42, C:0.18, G:0.04, T:0.36
Consensus pattern (100 bp):
AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
Found at i:66600968 original size:42 final size:42
Alignment explanation
Indices: 66600893--66601008 Score: 119
Period size: 42 Copynumber: 2.8 Consensus size: 42
66600883 TCATATGAGT
* * * ***
66600893 TTCCGTTTAACCCTAATGGGTTTAC-GTTCAGCTCTTTTGAGC
1 TTCCGTTTAACCCTTATGGGTTT-CTGTTTAGCTCCTACAAGC
*
66600935 TTCAC-TTTAACCCTTTTGGGTTTCTGTTTAGCTCCTACAAGC
1 TTC-CGTTTAACCCTTATGGGTTTCTGTTTAGCTCCTACAAGC
* *
66600977 TTCCGTTCAACCCTTATGGGTTTCTATTTAGC
1 TTCCGTTTAACCCTTATGGGTTTCTGTTTAGC
66601009 ACTTATATGC
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
41 2 0.03
42 58 0.95
43 1 0.02
ACGTcount: A:0.16, C:0.25, G:0.16, T:0.42
Consensus pattern (42 bp):
TTCCGTTTAACCCTTATGGGTTTCTGTTTAGCTCCTACAAGC
Found at i:66602917 original size:47 final size:47
Alignment explanation
Indices: 66602839--66602944 Score: 133
Period size: 47 Copynumber: 2.2 Consensus size: 47
66602829 ACAAAGGCAT
* * *
66602839 ATTAAAATGTTATACTAAGTAAGACATAATTAATAGACTTAAGACAC
1 ATTAAAATGTTATACTAAATAAGACACAATTAATAAACTTAAGACAC
* * *
66602886 ATTAAAAT-TCTATACTAAATAGGACACAATTAGTAAACTTATGACAC
1 ATTAAAATGT-TATACTAAATAAGACACAATTAATAAACTTAAGACAC
66602933 ATTAAAGATGTT
1 ATTAAA-ATGTT
66602945 CAAATCAATG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
46 1 0.02
47 45 0.90
48 3 0.06
49 1 0.02
ACGTcount: A:0.47, C:0.11, G:0.10, T:0.31
Consensus pattern (47 bp):
ATTAAAATGTTATACTAAATAAGACACAATTAATAAACTTAAGACAC
Found at i:66608795 original size:45 final size:44
Alignment explanation
Indices: 66608727--66608817 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 44
66608717 TTTTTACTAC
* *
66608727 TGAACCGCTACTCACGTGTGATGTTGGAAACAGAATACGAGTGA
1 TGAACCGCTACGCACGTGGGATGTTGGAAACAGAATACGAGTGA
66608771 TGNAACCGCTACGCACGTGGGATGTTGGAAACAGAATACGAGTGA
1 TG-AACCGCTACGCACGTGGGATGTTGGAAACAGAATACGAGTGA
66608816 TG
1 TG
66608818 TGCTCGATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
44 2 0.05
45 42 0.95
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.21
Consensus pattern (44 bp):
TGAACCGCTACGCACGTGGGATGTTGGAAACAGAATACGAGTGA
Found at i:66616637 original size:23 final size:22
Alignment explanation
Indices: 66616585--66616637 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
66616575 TCCACGTCTT
*
66616585 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
66616607 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
66616630 TTTCTTTT
1 TTTCTTTT
66616638 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:66617951 original size:11 final size:9
Alignment explanation
Indices: 66617911--66617944 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
66617901 TTTTATTGAA
*
66617911 TTTTGTCTT
1 TTTTGACTT
66617920 TTTTGA-TT
1 TTTTGACTT
66617928 TTTTGACTT
1 TTTTGACTT
66617937 TTTTGACT
1 TTTTGACT
66617945 GATTTTTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.09, C:0.09, G:0.12, T:0.71
Consensus pattern (9 bp):
TTTTGACTT
Found at i:66633633 original size:147 final size:147
Alignment explanation
Indices: 66633366--66633659 Score: 579
Period size: 147 Copynumber: 2.0 Consensus size: 147
66633356 GGCATAGGTG
*
66633366 ATATATGGTATATGTTTTGGAAATGGTTGAGTAGTGACACGTGTTTGAGCATGGAAATTGATTAA
1 ATATATGATATATGTTTTGGAAATGGTTGAGTAGTGACACGTGTTTGAGCATGGAAATTGATTAA
66633431 TGGCTTGGAAGATGTATGAATATAATAGCCGTAATATATATGCATATATCCTTAGGAATGTTTGG
66 TGGCTTGGAAGATGTATGAATATAATAGCCGTAATATATATGCATATATCCTTAGGAATGTTTGG
66633496 TTGTTTTAAATGTGATT
131 TTGTTTTAAATGTGATT
66633513 ATATATGATATATGTTTTGGAAATGGTTGAGTAGTGACACGTGTTTGAGCATGGAAATTGATTAA
1 ATATATGATATATGTTTTGGAAATGGTTGAGTAGTGACACGTGTTTGAGCATGGAAATTGATTAA
66633578 TGGCTTGGAAGATGTATGAATATAATAGCCGTAATATATATGCATATATCCTTAGGAATGTTTGG
66 TGGCTTGGAAGATGTATGAATATAATAGCCGTAATATATATGCATATATCCTTAGGAATGTTTGG
66633643 TTGTTTTAAATGTGATT
131 TTGTTTTAAATGTGATT
66633660 CATAATAAAA
Statistics
Matches: 146, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
147 146 1.00
ACGTcount: A:0.31, C:0.06, G:0.24, T:0.39
Consensus pattern (147 bp):
ATATATGATATATGTTTTGGAAATGGTTGAGTAGTGACACGTGTTTGAGCATGGAAATTGATTAA
TGGCTTGGAAGATGTATGAATATAATAGCCGTAATATATATGCATATATCCTTAGGAATGTTTGG
TTGTTTTAAATGTGATT
Found at i:66638003 original size:27 final size:26
Alignment explanation
Indices: 66637955--66638014 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
66637945 GCGAGGCTGC
*
66637955 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
66637982 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
66638008 CAGATAT
1 CAGATAT
66638015 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:66638059 original size:71 final size:67
Alignment explanation
Indices: 66637982--66638123 Score: 203
Period size: 67 Copynumber: 2.1 Consensus size: 67
66637972 TCACCAGATA
* * *
66637982 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGA
66638047 GGCTGC
62 GGCTGC
* *
66638053 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
66638118 GC
66 GC
66638120 CAGA
1 CAGA
66638124 ACGCTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
67 41 0.62
71 25 0.38
ACGTcount: A:0.30, C:0.23, G:0.29, T:0.18
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:66638101 original size:27 final size:26
Alignment explanation
Indices: 66638053--66638104 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
66638043 GCGAGGCTGC
*
66638053 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
66638079 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
66638105 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:66645245 original size:27 final size:26
Alignment explanation
Indices: 66645197--66645256 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
66645187 GCGAGGCTGC
*
66645197 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
66645224 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
66645250 CAGATAT
1 CAGATAT
66645257 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:66645269 original size:33 final size:32
Alignment explanation
Indices: 66645218--66645281 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
66645208 ACGAAGTCAC
* *
66645218 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCAAAGCCACCAGAA
* *
66645250 CAGATATATATATATGTGGCAAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCAAAGCCACCAGA
66645282 TTGCAACAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCAAAGCCACCAGAA
Found at i:66655570 original size:100 final size:100
Alignment explanation
Indices: 66655397--66655602 Score: 376
Period size: 100 Copynumber: 2.1 Consensus size: 100
66655387 TTCCTATCAA
* * * *
66655397 AATTAACAAAAATTTCATGATTTTCATCACCAAAATTGTCCACTATGAAATAAATTGTTCTATTT
1 AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
66655462 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
66 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
66655497 AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
1 AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
66655562 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
66 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
66655597 AATTAA
1 AATTAA
66655603 CTCTTTTAAC
Statistics
Matches: 102, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 102 1.00
ACGTcount: A:0.41, C:0.18, G:0.04, T:0.36
Consensus pattern (100 bp):
AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
Found at i:66658261 original size:42 final size:42
Alignment explanation
Indices: 66658186--66658301 Score: 119
Period size: 42 Copynumber: 2.8 Consensus size: 42
66658176 TCATATGAGT
* * * ***
66658186 TTCCGTTTAACCCTAATGGGTTTAC-GTTCAGCTCTTTTGAGC
1 TTCCGTTTAACCCTTATGGGTTT-CTGTTTAGCTCCTACAAGC
*
66658228 TTCAC-TTTAACCCTTTTGGGTTTCTGTTTAGCTCCTACAAGC
1 TTC-CGTTTAACCCTTATGGGTTTCTGTTTAGCTCCTACAAGC
* *
66658270 TTCCGTTCAACCCTTATGGGTTTCTATTTAGC
1 TTCCGTTTAACCCTTATGGGTTTCTGTTTAGC
66658302 ACTTATATGC
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
41 2 0.03
42 58 0.95
43 1 0.02
ACGTcount: A:0.16, C:0.25, G:0.16, T:0.42
Consensus pattern (42 bp):
TTCCGTTTAACCCTTATGGGTTTCTGTTTAGCTCCTACAAGC
Found at i:66660210 original size:47 final size:47
Alignment explanation
Indices: 66660132--66660237 Score: 133
Period size: 47 Copynumber: 2.2 Consensus size: 47
66660122 ACAAAGGCAT
* * *
66660132 ATTAAAATGTTATACTAAGTAAGACATAATTAATAGACTTAAGACAC
1 ATTAAAATGTTATACTAAATAAGACACAATTAATAAACTTAAGACAC
* * *
66660179 ATTAAAAT-TCTATACTAAATAGGACACAATTAGTAAACTTATGACAC
1 ATTAAAATGT-TATACTAAATAAGACACAATTAATAAACTTAAGACAC
66660226 ATTAAAGATGTT
1 ATTAAA-ATGTT
66660238 CAAATCAATG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
46 1 0.02
47 45 0.90
48 3 0.06
49 1 0.02
ACGTcount: A:0.47, C:0.11, G:0.10, T:0.31
Consensus pattern (47 bp):
ATTAAAATGTTATACTAAATAAGACACAATTAATAAACTTAAGACAC
Found at i:66663174 original size:148 final size:148
Alignment explanation
Indices: 66662994--66663288 Score: 581
Period size: 148 Copynumber: 2.0 Consensus size: 148
66662984 TCTTCTCTTG
66662994 GTTCTTCTTCTTTTCTTCAACTGTGGCTCCTTGTGGTACTCTGGCCGAATATCCTGTGTCTCTTC
1 GTTCTTCTTCTTTTCTTCAACTGTGGCTCCTTGTGGTACTCTGGCCGAATATCCTGTGTCTCTTC
*
66663059 TCCCTTTCTTCTTCTCAATCAATCCCTCCTAACCGATTGTACTTTCTTCTCTCCTCTCAATCATG
66 TCCCTTTCTTCTTCTCAATCAATCCCCCCTAACCGATTGTACTTTCTTCTCTCCTCTCAATCATG
66663124 CCATTCTTCCTTACTAAT
131 CCATTCTTCCTTACTAAT
66663142 GTTCTTCTTCTTTTCTTCAACTGTGGCTCCTTGTGGTACTCTGGCCGAATATCCTGTGTCTCTTC
1 GTTCTTCTTCTTTTCTTCAACTGTGGCTCCTTGTGGTACTCTGGCCGAATATCCTGTGTCTCTTC
66663207 TCCCTTTCTTCTTCTCAATCAATCCCCCCTAACCGATTGTACTTTCTTCTCTCCTCTCAATCATG
66 TCCCTTTCTTCTTCTCAATCAATCCCCCCTAACCGATTGTACTTTCTTCTCTCCTCTCAATCATG
66663272 CCATTCTTCCTTACTAA
131 CCATTCTTCCTTACTAA
66663289 AATCGAATAT
Statistics
Matches: 146, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
148 146 1.00
ACGTcount: A:0.14, C:0.33, G:0.10, T:0.43
Consensus pattern (148 bp):
GTTCTTCTTCTTTTCTTCAACTGTGGCTCCTTGTGGTACTCTGGCCGAATATCCTGTGTCTCTTC
TCCCTTTCTTCTTCTCAATCAATCCCCCCTAACCGATTGTACTTTCTTCTCTCCTCTCAATCATG
CCATTCTTCCTTACTAAT
Found at i:66680560 original size:18 final size:19
Alignment explanation
Indices: 66680539--66680582 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
66680529 CAAATGAAGG
66680539 TTCATGTA-A-TTAAAAGAA
1 TTCATGTATACTTAAAAG-A
66680557 TTCAT-TATACTTAAAAGA
1 TTCATGTATACTTAAAAGA
66680575 TTCATGTA
1 TTCATGTA
66680583 CGACATAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 2 0.09
18 12 0.52
19 9 0.39
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (19 bp):
TTCATGTATACTTAAAAGA
Found at i:66683499 original size:15 final size:13
Alignment explanation
Indices: 66683459--66683492 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
66683449 AATTTGATCA
*
66683459 AAAAAATTCGCAT
1 AAAAAATTCGTAT
66683472 AAAAAATTCGTAT
1 AAAAAATTCGTAT
66683485 AAAAAATT
1 AAAAAATT
66683493 TCAGTATCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.59, C:0.09, G:0.06, T:0.26
Consensus pattern (13 bp):
AAAAAATTCGTAT
Found at i:66685187 original size:15 final size:15
Alignment explanation
Indices: 66685167--66685214 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
66685157 TCAAAGATGG
66685167 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
66685182 GTTTATGTAGATGGA
1 GTTTATGGATATGAA
*
66685197 -TTTATGGATATAAA
1 GTTTATGGATATGAA
66685211 GTTT
1 GTTT
66685215 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:66685194 original size:29 final size:29
Alignment explanation
Indices: 66685161--66685220 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
66685151 AAGGATTCAA
* *
66685161 AGATGGGTTTATGGATATGAAGTTTATGT
1 AGATGGATTTATGGATATAAAGTTTATGT
*
66685190 AGATGGATTTATGGATATAAAGTTTTTGT
1 AGATGGATTTATGGATATAAAGTTTATGT
66685219 AG
1 AG
66685221 GTTTGGTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.28, T:0.42
Consensus pattern (29 bp):
AGATGGATTTATGGATATAAAGTTTATGT
Found at i:66687389 original size:50 final size:49
Alignment explanation
Indices: 66687229--66687498 Score: 180
Period size: 46 Copynumber: 5.7 Consensus size: 49
66687219 TCATTTGTGT
* * * *
66687229 GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGAC-CTCATGACGT-A-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GAT-ATGTGATA
* *
66687275 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGTG-T-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGATATGTGATA
* * *
66687321 -C-AGTGTAATACCCTGTCTGGGACATGGCATTGGCACGGATATGTGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GATATGTGATA
* *
66687369 GCTAGTGTAAGACCATGTCTGGGACTTGGCATCGGCCTCGAT-T-TCGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACGATATGT-GATA
* * *
66687418 GTTAGTGTAAGACCATGTTTAGGACATGGCATC-G-AC--T-TGATGAATGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATATG-TG-AT-A
* * *
66687465 GCCAGTGCAAGACCATGTCTGAGACATGGCATCG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG
66687499 ACATTATACC
Statistics
Matches: 180, Mismatches: 26, Indels: 34
0.75 0.11 0.14
Matches are distributed among these distances:
44 10 0.06
45 17 0.09
46 52 0.29
47 30 0.17
48 3 0.02
49 35 0.19
50 31 0.17
51 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (49 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATATGTGATA
Found at i:66687430 original size:49 final size:48
Alignment explanation
Indices: 66687278--66687498 Score: 163
Period size: 49 Copynumber: 4.6 Consensus size: 48
66687268 GACGTAAGCC
** *
66687278 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTACGAGATG-T-GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGATTTGATAGTT
* * * * *
66687322 AGTGTAATACCCTGTCTGGGACATGGCATTGGCAC-GGATATGTGATAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAT-T-TGATAGTT
*
66687372 AGTGTAAGACCATGTCTGGGACTTGGCATCGGCCTCGATTTCGATAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTT-GATAGTT
* * * * **
66687421 AGTGTAAGACCATGTTTAGGACATGGCATC-GACTTGA--TGAATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTG-AT-AGTT
* *
66687468 AGTGCAAGACCATGTCTGAGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
66687499 ACATTATACC
Statistics
Matches: 139, Mismatches: 25, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
44 8 0.06
45 14 0.10
46 11 0.08
47 28 0.20
48 9 0.06
49 36 0.26
50 33 0.24
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTGATAGTT
Found at i:66690503 original size:30 final size:30
Alignment explanation
Indices: 66690469--66690565 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
66690459 TAAACTAAAA
*
66690469 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* * * * * * *
66690499 TGAGCTGAGATTAAACTCCTAAGCTGAAGC
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
*
66690529 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
66690558 ATGAGCTA
1 -TGAGCTA
66690566 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
Found at i:66696564 original size:27 final size:27
Alignment explanation
Indices: 66696526--66696752 Score: 296
Period size: 27 Copynumber: 8.4 Consensus size: 27
66696516 NNNNNNNNNN
* *
66696526 GGTAGAATTACCAAAATACCCCTGTAA
1 GGTAGAATTACCGAAATACCCCTGTAG
*
66696553 GGTAGAATTACCGAAATACCCTTGTAG
1 GGTAGAATTACCGAAATACCCCTGTAG
* ** *
66696580 GGTAGAATTTCTAAAATA-CCCTAGTAA
1 GGTAGAATTACCGAAATACCCCT-GTAG
66696607 GGTAGAATTACCG-AATACCCCTGTAG
1 GGTAGAATTACCGAAATACCCCTGTAG
* *
66696633 GGTAGAATTACTGAAATACCCCTGTGG
1 GGTAGAATTACCGAAATACCCCTGTAG
* * *
66696660 GGTAAAATTACTGAAATACCCCTATAG
1 GGTAGAATTACCGAAATACCCCTGTAG
66696687 GGTAGAATTACCGAAATACCCCTGTAG
1 GGTAGAATTACCGAAATACCCCTGTAG
* * *
66696714 GGTAGAATTATCGCAATACCCCTATAG
1 GGTAGAATTACCGAAATACCCCTGTAG
66696741 GGTAGAATTACC
1 GGTAGAATTACC
66696753 NNNNNNNNNN
Statistics
Matches: 173, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
26 22 0.13
27 151 0.87
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
GGTAGAATTACCGAAATACCCCTGTAG
Found at i:66697140 original size:67 final size:67
Alignment explanation
Indices: 66697032--66697185 Score: 290
Period size: 67 Copynumber: 2.3 Consensus size: 67
66697022 GAGGAAGCGT
*
66697032 TCTGGCAGCCTCACTGCAATCTAGTGGCTTCGCCACATATATCTGTTCTGGTGAGTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTAGTGGCTTCGCCACATATATCTGTTCTGGTGAGTTCGTCACAA
66697097 TA
66 TA
*
66697099 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGAGTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTAGTGGCTTCGCCACATATATCTGTTCTGGTGAGTTCGTCACAA
66697164 TA
66 TA
66697166 TCTGGCAGCCTCGCTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
66697186 TTCTGTGGTG
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 85 1.00
ACGTcount: A:0.19, C:0.28, G:0.23, T:0.31
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTAGTGGCTTCGCCACATATATCTGTTCTGGTGAGTTCGTCACAA
TA
Found at i:66697157 original size:27 final size:26
Alignment explanation
Indices: 66697118--66697169 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
66697108 CTCGCTGCAA
66697118 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGGCTTCGCCACA-ATATCTGT
*
66697145 TCTGGTGAG-TTCGTCACAATATCTG
1 TCTGGTG-GCTTCGCCACAATATCTG
66697170 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 7 0.30
27 15 0.65
28 1 0.04
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
TCTGGTGGCTTCGCCACAATATCTGT
Found at i:66697297 original size:6 final size:6
Alignment explanation
Indices: 66697288--66697412 Score: 87
Period size: 6 Copynumber: 20.2 Consensus size: 6
66697278 TTGCATTCAC
* * * *
66697288 ATTCTG ATTCTA ATTCTG -TTACCTG ATACTG ATTTTG ATTCT- ATTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
66697338 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACTTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG
*
66697387 ATTCTG -TTACCTA ATTCTG ATTCTG A
1 ATTCTG ATT--CTG ATTCTG ATTCTG A
66697413 CTCACCCCGT
Statistics
Matches: 94, Mismatches: 13, Indels: 24
0.72 0.10 0.18
Matches are distributed among these distances:
5 9 0.10
6 68 0.72
7 10 0.11
8 7 0.07
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:66697354 original size:25 final size:25
Alignment explanation
Indices: 66697288--66697354 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 25
66697278 TTGCATTCAC
* * *
66697288 ATTCTGATTCTAATTCTGTTACCTG
1 ATTCTGATTCTGATTCTATTACCTA
* *
66697313 ATACTGATTTTGATTCTATTACCTA
1 ATTCTGATTCTGATTCTATTACCTA
*
66697338 ATTCTGATTCTGGTTCT
1 ATTCTGATTCTGATTCT
66697355 GATTCTGATT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.49
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTATTACCTA
Found at i:66697357 original size:37 final size:37
Alignment explanation
Indices: 66697310--66697392 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
66697300 ATTCTGTTAC
* * *
66697310 CTGATACTGATTTTGATTCTATTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTATTACCTAATACTGATT
* * * *
66697347 CTGGTTCTGATTCTGATTCTGTTACTTGATACTGATT
1 CTGATTCTGATTCTGATTCTATTACCTAATACTGATT
66697384 CTGATTCTG
1 CTGATTCTG
66697393 TTACCTAATT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.19, C:0.17, G:0.16, T:0.48
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTATTACCTAATACTGATT
Found at i:66697383 original size:25 final size:25
Alignment explanation
Indices: 66697353--66697412 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
66697343 GATTCTGGTT
* *
66697353 CTGATTCTGATTCTGTTACTTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
66697378 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
66697403 CTGATTCTGA
1 CTGATTCTGA
66697413 CTCACCCCGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:66697389 original size:62 final size:62
Alignment explanation
Indices: 66697289--66697411 Score: 210
Period size: 62 Copynumber: 2.0 Consensus size: 62
66697279 TGCATTCACA
*
66697289 TTCTGATTCTAATTCTGTTACCTGATACTGATTTTGATTCTATTACCTAATTCTGATTCTGG
1 TTCTGATTCTAATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTCTGATTCTGG
* * *
66697351 TTCTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
1 TTCTGATTCTAATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTCTGATTCTG
66697412 ACTCACCCCG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (62 bp):
TTCTGATTCTAATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTCTGATTCTGG
Found at i:66697392 original size:31 final size:30
Alignment explanation
Indices: 66697288--66697392 Score: 106
Period size: 31 Copynumber: 3.4 Consensus size: 30
66697278 TTGCATTCAC
*
66697288 ATTCTGATTCTAATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTA-CTGATACTG
* * *
66697319 ATTTTGATTCT-ATTACCTAATT-CTGATTCTG
1 ATTCTGATTCTGATT--CT-GTTACTGATACTG
*
66697350 GTTCTGATTCTGATTCTGTTACTTGATACTG
1 ATTCTGATTCTGATTCTGTTAC-TGATACTG
66697381 ATTCTGATTCTG
1 ATTCTGATTCTG
66697393 TTACCTAATT
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
29 2 0.03
30 6 0.10
31 45 0.75
32 5 0.08
33 2 0.03
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTGATACTG
Found at i:66697411 original size:19 final size:19
Alignment explanation
Indices: 66697323--66697411 Score: 74
Period size: 19 Copynumber: 4.4 Consensus size: 19
66697313 ATACTGATTT
*
66697323 TGATTCTATTACCTAATTC
1 TGATTCTGTTACCTAATTC
*
66697342 TGATTCTGGTT--CTGATTC
1 TGATTCT-GTTACCTAATTC
*
66697360 TGATTCTGTTACTTGATACTGATTC
1 TGATTCTGTTAC------CTAATTC
66697385 TGATTCTGTTACCTAATTC
1 TGATTCTGTTACCTAATTC
66697404 TGATTCTG
1 TGATTCTG
66697412 ACTCACCCCG
Statistics
Matches: 58, Mismatches: 3, Indels: 18
0.73 0.04 0.23
Matches are distributed among these distances:
17 3 0.05
18 13 0.22
19 21 0.36
20 2 0.03
25 19 0.33
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (19 bp):
TGATTCTGTTACCTAATTC
Found at i:66707016 original size:20 final size:20
Alignment explanation
Indices: 66706991--66707029 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
66706981 TCTGTAGAAA
66706991 AAGAAAAAGAAAAAAAAGAC
1 AAGAAAAAGAAAAAAAAGAC
*
66707011 AAGAAAAAGAAAGAAAAGA
1 AAGAAAAAGAAAAAAAAGA
66707030 GTGAGAAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (20 bp):
AAGAAAAAGAAAAAAAAGAC
Found at i:66707029 original size:15 final size:14
Alignment explanation
Indices: 66706988--66707029 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
66706978 GAGTCTGTAG
66706988 AAAAAGAAAAAGAAA
1 AAAAAG-AAAAGAAA
*
66707003 AAAAAGACAAGAAA
1 AAAAAGAAAAGAAA
66707017 AAGAAAGAAAAGA
1 AA-AAAGAAAAGA
66707030 GTGAGAAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 9 0.38
15 15 0.62
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAGAAA
Found at i:66709241 original size:27 final size:27
Alignment explanation
Indices: 66709211--66709354 Score: 173
Period size: 27 Copynumber: 5.3 Consensus size: 27
66709201 GGCAAAATGG
* * *
66709211 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
66709238 TAATTCTACCTTACAGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
66709264 GTATTTCTACCCTACAAGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
* * * *
66709292 TAATTCTATCCTATAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
66709319 TAATTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
66709346 TAATTCTAC
1 TAATTCTAC
66709355 AACTTATCCA
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 97 0.99
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:66709282 original size:54 final size:53
Alignment explanation
Indices: 66709213--66709354 Score: 205
Period size: 54 Copynumber: 2.7 Consensus size: 53
66709203 CAAAATGGTA
* *
66709213 ATTT-TACCCCACAAGGGTATCTCGATAATTCTACCTTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACC-TACAGGGGTATTTCAGT
* * *
66709266 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTATAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTA-CCTACAGGGGTATTTCAGT
*
66709320 AATTCTACCCTACAAGGGTATTTCGATAATTCTAC
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTAC
66709355 AACTTATCCA
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
53 5 0.06
54 73 0.91
55 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (53 bp):
ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCTACAGGGGTATTTCAGT
Found at i:66716578 original size:64 final size:64
Alignment explanation
Indices: 66716477--66716606 Score: 208
Period size: 64 Copynumber: 2.0 Consensus size: 64
66716467 TTGATTCTTT
* * *
66716477 ATGGCATTTTGATTACATAAATGGGCAGTTTGCATTTAACTGATTTAGTCACTACTTTTGATGC
1 ATGGCATTTTGATTACATAAATGGGCAGTTTGCATTTAACTGATTCAGCCACTACTTTCGATGC
*
66716541 ATGGCATTTTGATTTA-ATAAATGGGCAGTTTGCATTTAACTGATTCAGCCCCTACTTTCGATGC
1 ATGGCATTTTGA-TTACATAAATGGGCAGTTTGCATTTAACTGATTCAGCCACTACTTTCGATGC
66716605 AT
1 AT
66716607 TTATGAACTG
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
64 58 0.95
65 3 0.05
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.39
Consensus pattern (64 bp):
ATGGCATTTTGATTACATAAATGGGCAGTTTGCATTTAACTGATTCAGCCACTACTTTCGATGC
Found at i:66719658 original size:16 final size:16
Alignment explanation
Indices: 66719600--66719658 Score: 66
Period size: 16 Copynumber: 3.6 Consensus size: 16
66719590 GAAACTTTTT
66719600 TCCCCAAATTC-TAAAA
1 TCCCCAAA-TCGTAAAA
* *
66719616 TCCCCAACTCGTCAAAT
1 TCCCCAAATCGT-AAAA
*
66719633 TCCCCAAATCGTGAAA
1 TCCCCAAATCGTAAAA
66719649 TCCCCAAATC
1 TCCCCAAATC
66719659 CATAACATCT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
15 2 0.06
16 20 0.56
17 14 0.39
ACGTcount: A:0.36, C:0.37, G:0.05, T:0.22
Consensus pattern (16 bp):
TCCCCAAATCGTAAAA
Found at i:66722661 original size:43 final size:43
Alignment explanation
Indices: 66722594--66722679 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
66722584 ATCACCAGTA
* * *
66722594 TCGCACCCATTATGAACTCAGACCACTCAACGAGCTTGAATGC
1 TCGCACCCATAATGAACCCAGACCACTCAACGAGCTCGAATGC
* *
66722637 TCGCATCCATAATGAACCCGGACCACTCAACGAGCTCGAATGC
1 TCGCACCCATAATGAACCCAGACCACTCAACGAGCTCGAATGC
66722680 CACATATATC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.30, C:0.34, G:0.17, T:0.19
Consensus pattern (43 bp):
TCGCACCCATAATGAACCCAGACCACTCAACGAGCTCGAATGC
Found at i:66733432 original size:40 final size:40
Alignment explanation
Indices: 66733388--66733649 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
66733378 GCTCCTCGTT
* *
66733388 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
66733428 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
66733468 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
66733507 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
66733546 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
66733585 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
66733626 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
66733650 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:66736618 original size:23 final size:23
Alignment explanation
Indices: 66736591--66736662 Score: 117
Period size: 23 Copynumber: 3.1 Consensus size: 23
66736581 CATCCTTAAT
*
66736591 CCTTACAACCAAATCGTGAAATC
1 CCTTAGAACCAAATCGTGAAATC
*
66736614 CCTTAGAACCAAATTGTGAAATC
1 CCTTAGAACCAAATCGTGAAATC
*
66736637 CCTTAGAACCAAATCATGAAATC
1 CCTTAGAACCAAATCGTGAAATC
66736660 CCT
1 CCT
66736663 AATCTTTCCA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.39, C:0.28, G:0.10, T:0.24
Consensus pattern (23 bp):
CCTTAGAACCAAATCGTGAAATC
Found at i:66740024 original size:20 final size:20
Alignment explanation
Indices: 66739999--66740038 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
66739989 AATTATATGA
*
66739999 ATATAAATATACGCTTTCTT
1 ATATAAATATACGATTTCTT
*
66740019 ATATAAATATTCGATTTCTT
1 ATATAAATATACGATTTCTT
66740039 TTTTTTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.35, C:0.12, G:0.05, T:0.47
Consensus pattern (20 bp):
ATATAAATATACGATTTCTT
Found at i:66742551 original size:7 final size:7
Alignment explanation
Indices: 66742541--66742572 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
66742531 TAAAATAGAA
66742541 AAATAAT
1 AAATAAT
66742548 AAATAAT
1 AAATAAT
66742555 AAATAAT
1 AAATAAT
66742562 AAATAAAT
1 AAAT-AAT
66742570 AAA
1 AAA
66742573 ACTAAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (7 bp):
AAATAAT
Found at i:66742582 original size:22 final size:21
Alignment explanation
Indices: 66742525--66742582 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
66742515 TAATGTCCTC
66742525 TAAAACTAAAATAGAAAAATAA
1 TAAAACTAAAATA-AAAAATAA
* *
66742547 TAAATAAT-AAATAATAAATAAA
1 TAAA-ACTAAAATAAAAAAT-AA
66742569 TAAAACTAAAATAA
1 TAAAACTAAAATAA
66742583 CATAAAAGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 7 0.23
22 21 0.70
23 2 0.07
ACGTcount: A:0.72, C:0.03, G:0.02, T:0.22
Consensus pattern (21 bp):
TAAAACTAAAATAAAAAATAA
Found at i:66747886 original size:78 final size:78
Alignment explanation
Indices: 66747793--66747952 Score: 275
Period size: 78 Copynumber: 2.1 Consensus size: 78
66747783 TTTGCCAAAG
*
66747793 TATGATTATTAGACCAATTTGAATAATTTGAGTGTTAAATAAGTTATATTTAAAATGTTAGATCA
1 TATGATTATTAGACCAATTTGAATAATGTGAGTGTTAAATAAGTTATATTTAAAATGTTAGATCA
66747858 AGAAGAATGAGGT
66 AGAAGAATGAGGT
* * * *
66747871 TATGATTTTTGGACCAATTTGAATAATGTGAGTGTTAAATAAGTTATATTTGACATGTTAGATCA
1 TATGATTATTAGACCAATTTGAATAATGTGAGTGTTAAATAAGTTATATTTAAAATGTTAGATCA
66747936 AGAAGAATGAGGT
66 AGAAGAATGAGGT
66747949 TATG
1 TATG
66747953 GACTAAATTG
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.38, C:0.04, G:0.20, T:0.38
Consensus pattern (78 bp):
TATGATTATTAGACCAATTTGAATAATGTGAGTGTTAAATAAGTTATATTTAAAATGTTAGATCA
AGAAGAATGAGGT
Found at i:66753170 original size:27 final size:27
Alignment explanation
Indices: 66753132--66753185 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
66753122 ATAAAAAAAA
66753132 TACCAAGCTTAAATTTGCATATTCACT
1 TACCAAGCTTAAATTTGCATATTCACT
66753159 TACCAAGCTTAAATTTGCATATTCACT
1 TACCAAGCTTAAATTTGCATATTCACT
66753186 AACCTTTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.37
Consensus pattern (27 bp):
TACCAAGCTTAAATTTGCATATTCACT
Found at i:66754066 original size:50 final size:51
Alignment explanation
Indices: 66754012--66754113 Score: 152
Period size: 50 Copynumber: 2.0 Consensus size: 51
66754002 TTGCAGTAGT
* * *
66754012 AACATTATCCAATCCATTTGATGTTG-AAAAACACTAGCATATTCATCAGC
1 AACATTATACAATCCATCTGATGTTGTAAAAACACCAGCATATTCATCAGC
* *
66754062 AACATTATACACTCCATCTGATGTTGTAAAATCACCAGCATATTCATCAGC
1 AACATTATACAATCCATCTGATGTTGTAAAAACACCAGCATATTCATCAGC
66754113 A
1 A
66754114 GTAACTTCAC
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
50 23 0.50
51 23 0.50
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (51 bp):
AACATTATACAATCCATCTGATGTTGTAAAAACACCAGCATATTCATCAGC
Found at i:66755038 original size:41 final size:40
Alignment explanation
Indices: 66754937--66755172 Score: 249
Period size: 41 Copynumber: 5.8 Consensus size: 40
66754927 TTAATTATTT
** * * *
66754937 CCTGAATTGTACATACTTGCCCCTATATATACTTTGGTAC
1 CCTGAATTACACATACGTGCCCCTATTTATACTTTAGTAC
* * * *
66754977 CCTGAATTGCACATACGTGCCCCTGTTTGTACTTTAATAC
1 CCTGAATTACACATACGTGCCCCTATTTATACTTTAGTAC
* * * *
66755017 CCTTGAATTGCACATATGTGCCCCTATTTGTACTTTGGTAC
1 CC-TGAATTACACATACGTGCCCCTATTTATACTTTAGTAC
*
66755058 CCTGAATTACACATACGTGCCCCTAATTATACTTTAGTAC
1 CCTGAATTACACATACGTGCCCCTATTTATACTTTAGTAC
** * *
66755098 CCTTGAATTACACATACGTGCCTATTTTTATACTTCAGTACC
1 CC-TGAATTACACATACGTGCCCCTATTTATACTTTAGTA-C
* *
66755140 CCTGTAA-TACACATATGTGCCCCTGTTTATACT
1 CCTG-AATTACACATACGTGCCCCTATTTATACT
66755173 CCGGTAACTT
Statistics
Matches: 167, Mismatches: 25, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
40 70 0.42
41 92 0.55
42 5 0.03
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (40 bp):
CCTGAATTACACATACGTGCCCCTATTTATACTTTAGTAC
Found at i:66755074 original size:81 final size:81
Alignment explanation
Indices: 66754939--66755172 Score: 283
Period size: 81 Copynumber: 2.9 Consensus size: 81
66754929 AATTATTTCC
* * *
66754939 TGAATTGTACATACT-TGCCCCTATATATACTTTGGTACCCTGAATTGCACATACGTGCCCCTGT
1 TGAATTGCACATA-TGTGCCCCTATTTATACTTTGGTACCCTGAATTACACATACGTGCCCCTGT
*
66755003 TTGTACTTTAATACCCT
65 TTATACTTTAATACCCT
* **
66755020 TGAATTGCACATATGTGCCCCTATTTGTACTTTGGTACCCTGAATTACACATACGTGCCCCTAAT
1 TGAATTGCACATATGTGCCCCTATTTATACTTTGGTACCCTGAATTACACATACGTGCCCCTGTT
*
66755085 TATACTTTAGTACCCT
66 TATACTTTAATACCCT
* * ** * ** *
66755101 TGAATTACACATACGTGCCTATTTTTATACTTCAGTACCCCTGTAA-TACACATATGTGCCCCTG
1 TGAATTGCACATATGTGCCCCTATTTATACTTTGGTA-CCCTG-AATTACACATACGTGCCCCTG
66755165 TTTATACT
64 TTTATACT
66755173 CCGGTAACTT
Statistics
Matches: 131, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
80 1 0.01
81 100 0.76
82 28 0.21
83 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.37
Consensus pattern (81 bp):
TGAATTGCACATATGTGCCCCTATTTATACTTTGGTACCCTGAATTACACATACGTGCCCCTGTT
TATACTTTAATACCCT
Found at i:66755217 original size:23 final size:23
Alignment explanation
Indices: 66755181--66755227 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
66755171 CTCCGGTAAC
*
66755181 TTTGAGTCGTGTACAATAAGAGT
1 TTTGAGTCGAGTACAATAAGAGT
*
66755204 TTTGAGTTGAGTACAATAAGAGT
1 TTTGAGTCGAGTACAATAAGAGT
66755227 T
1 T
66755228 GTACTTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.36
Consensus pattern (23 bp):
TTTGAGTCGAGTACAATAAGAGT
Found at i:66766062 original size:21 final size:24
Alignment explanation
Indices: 66766027--66766078 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 24
66766017 TAAGGTTAAC
66766027 CATTTAGGTATACTTTAGAAGT-AT
1 CATTT-GGTATACTTTAGAAGTGAT
*
66766051 -ATTTGGTA-ACTTTTGAAGTGAT
1 CATTTGGTATACTTTAGAAGTGAT
66766073 CATTTG
1 CATTTG
66766079 ATTGTGTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 10 0.40
22 6 0.24
23 9 0.36
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (24 bp):
CATTTGGTATACTTTAGAAGTGAT
Found at i:66772360 original size:30 final size:30
Alignment explanation
Indices: 66772316--66772372 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
66772306 TACAAGCATT
*
66772316 GGGGCAAAAGTGCAAATATGTGAAAGTTTA
1 GGGGCAAAAGTGCAAATATGTAAAAGTTTA
*
66772346 GGGGTCAAAA-TGCAAATTTGTAAAAGT
1 GGGG-CAAAAGTGCAAATATGTAAAAGT
66772373 ATGATTTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.40, C:0.07, G:0.28, T:0.25
Consensus pattern (30 bp):
GGGGCAAAAGTGCAAATATGTAAAAGTTTA
Found at i:66772915 original size:43 final size:43
Alignment explanation
Indices: 66772867--66773000 Score: 139
Period size: 43 Copynumber: 3.1 Consensus size: 43
66772857 TAAGCTGTCT
66772867 GAGTTCGTGATATATGTGAGAATCCGAACTTGTTGAGTGGTCC
1 GAGTTCGTGATATATGTGAGAATCCGAACTTGTTGAGTGGTCC
* *
66772910 AAGTTCGTGATATATGTGACATAT---AAGCTTGTTGAGTGGTCC
1 GAGTTCGTGATATATGTGAGA-ATCCGAA-CTTGTTGAGTGGTCC
* * ** * * **
66772952 GAGTTCATTATGGATGTGAGCATCCGAGCTCATTGAGTGGTCC
1 GAGTTCGTGATATATGTGAGAATCCGAACTTGTTGAGTGGTCC
66772995 GAGTTC
1 GAGTTC
66773001 ATAATGGATG
Statistics
Matches: 74, Mismatches: 12, Indels: 10
0.77 0.12 0.10
Matches are distributed among these distances:
41 4 0.05
42 29 0.39
43 38 0.51
44 3 0.04
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.33
Consensus pattern (43 bp):
GAGTTCGTGATATATGTGAGAATCCGAACTTGTTGAGTGGTCC
Found at i:66772957 original size:42 final size:41
Alignment explanation
Indices: 66772867--66772957 Score: 121
Period size: 42 Copynumber: 2.1 Consensus size: 41
66772857 TAAGCTGTCT
*
66772867 GAGTTCGTGATATATGTGAGAATCCGAACTTGTTGAGTGGTCC
1 GAGTTCGTGATATATGTGACAAT-C-AACTTGTTGAGTGGTCC
*
66772910 AAGTTCGTGATATATGTGACATAT-AAGCTTGTTGAGTGGTCC
1 GAGTTCGTGATATATGTGACA-ATCAA-CTTGTTGAGTGGTCC
66772952 GAGTTC
1 GAGTTC
66772958 ATTATGGATG
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
41 2 0.05
42 20 0.47
43 19 0.44
44 2 0.05
ACGTcount: A:0.24, C:0.13, G:0.29, T:0.34
Consensus pattern (41 bp):
GAGTTCGTGATATATGTGACAATCAACTTGTTGAGTGGTCC
Found at i:66773048 original size:51 final size:51
Alignment explanation
Indices: 66772972--66773071 Score: 137
Period size: 51 Copynumber: 2.0 Consensus size: 51
66772962 TGGATGTGAG
* *
66772972 CATCCGAGCTCATTGAGTGGTCCGAGTTCATAATGGATGCGATACATGTAA
1 CATCCGAGCTCATTGAGAGATCCGAGTTCATAATGGATGCGATACATGTAA
* * * * *
66773023 CATCCGAGCTCGTTGAGAGATCCGAGTTTATTATGGATGTGTTACATGT
1 CATCCGAGCTCATTGAGAGATCCGAGTTCATAATGGATGCGATACATGT
66773072 TATAAGGTAG
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (51 bp):
CATCCGAGCTCATTGAGAGATCCGAGTTCATAATGGATGCGATACATGTAA
Found at i:66774000 original size:35 final size:35
Alignment explanation
Indices: 66773954--66774023 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
66773944 TAAGTGACTA
66773954 TGACTCAAGAAAACATCATGACCAGAATATTAAGT
1 TGACTCAAGAAAACATCATGACCAGAATATTAAGT
66773989 TGACTCAAGAAAACATCATGACCAGAATATTAAGT
1 TGACTCAAGAAAACATCATGACCAGAATATTAAGT
66774024 AAAAGTATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.46, C:0.17, G:0.14, T:0.23
Consensus pattern (35 bp):
TGACTCAAGAAAACATCATGACCAGAATATTAAGT
Found at i:66775559 original size:24 final size:24
Alignment explanation
Indices: 66775527--66775573 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
66775517 ATAAAAGTGG
66775527 TTTATGGATTGAATTGAATGTTCA
1 TTTATGGATTGAATTGAATGTTCA
66775551 TTTATGGATTGAATTGAATGTTC
1 TTTATGGATTGAATTGAATGTTC
66775574 GAGATTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.28, C:0.04, G:0.21, T:0.47
Consensus pattern (24 bp):
TTTATGGATTGAATTGAATGTTCA
Found at i:66776007 original size:21 final size:20
Alignment explanation
Indices: 66775947--66776007 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
66775937 CCTCTGTTTG
66775947 TACTTCGGTACCCTTAAATTA
1 TACTTCGGTACCCTT-AATTA
* * * *
66775968 CACATAC-GTGCCCCTAATTA
1 TAC-TTCGGTACCCTTAATTA
66775988 TACTTCGGTACCCTTGAATT
1 TACTTCGGTACCCTT-AATT
66776008 GCACATACAT
Statistics
Matches: 29, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
19 2 0.07
20 13 0.45
21 12 0.41
22 2 0.07
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.34
Consensus pattern (20 bp):
TACTTCGGTACCCTTAATTA
Found at i:66776022 original size:41 final size:41
Alignment explanation
Indices: 66775802--66776038 Score: 224
Period size: 41 Copynumber: 5.8 Consensus size: 41
66775792 ATTGCCTGAT
* * * *
66775802 TTGCACATATGTGCCTCTGTTTGTACTTTGGTGCCC-TGAA
1 TTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTGAA
* ** * * *
66775842 TTGCACATACATATCCTTGATTGTACTTTGGTACCCTTGAA
1 TTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTGAA
* * * * *
66775883 TTACACATACGTGCCCTTGTTTGTACTTCGATACCCCTAAA
1 TTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTGAA
** * *
66775924 TTGCACATTTGTGCCTCTGTTTGTACTTCGGTACCCTTAAA
1 TTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTGAA
* ** *
66775965 TTACACATACGTGCCCCTAATTATACTTCGGTACCCTTGAA
1 TTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTGAA
* * * *
66776006 TTGCACATACATGCCCCTCTTTATACTCCGGTA
1 TTGCACATACGTGCCCCTGTTTGTACTTCGGTA
66776039 ACTCTGAATC
Statistics
Matches: 159, Mismatches: 37, Indels: 1
0.81 0.19 0.01
Matches are distributed among these distances:
40 28 0.18
41 131 0.82
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.37
Consensus pattern (41 bp):
TTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTGAA
Found at i:66776677 original size:117 final size:118
Alignment explanation
Indices: 66776534--66776745 Score: 356
Period size: 117 Copynumber: 1.8 Consensus size: 118
66776524 GGTAATAGAA
* * *
66776534 ATCAACAACATCGGGACCATTATCGCATCATAAATCAACAAAACAAACCCTACATTGTGGCA-TT
1 ATCAACAACATCAGGACCATTATCGCATCACAAATCAACAAAACAAACCCTACATTGTGGCACTA
66776598 AAAATTGCAATAATAAATCACAAATAACCATCTACAATTTTAACAATAGCTTT
66 AAAATTGCAATAATAAATCACAAATAACCATCTACAATTTTAACAATAGCTTT
* *
66776651 ATCAACAACATCAGGACCACTT-TCGCATCACAAATCGACAAAAGAAACCCTACATTGTGGCACT
1 ATCAACAACATCAGGACCA-TTATCGCATCACAAATCAACAAAACAAACCCTACATTGTGGCACT
66776715 AAAAATTGCAATAATAAATCACAAATAACCA
65 AAAAATTGCAATAATAAATCACAAATAACCA
66776746 ACAAATCGAA
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
117 55 0.62
118 33 0.38
ACGTcount: A:0.45, C:0.24, G:0.08, T:0.23
Consensus pattern (118 bp):
ATCAACAACATCAGGACCATTATCGCATCACAAATCAACAAAACAAACCCTACATTGTGGCACTA
AAAATTGCAATAATAAATCACAAATAACCATCTACAATTTTAACAATAGCTTT
Found at i:66776933 original size:16 final size:16
Alignment explanation
Indices: 66776912--66776958 Score: 69
Period size: 16 Copynumber: 2.9 Consensus size: 16
66776902 CAGATTGCTA
66776912 AAGATTTAGGGATTTT
1 AAGATTTAGGGATTTT
66776928 AAGATTT-GAGGATTTT
1 AAGATTTAG-GGATTTT
66776944 AAGATTTTAGGGATT
1 AAGA-TTTAGGGATT
66776959 CAACGAAGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
15 1 0.04
16 18 0.64
17 8 0.29
18 1 0.04
ACGTcount: A:0.32, C:0.00, G:0.26, T:0.43
Consensus pattern (16 bp):
AAGATTTAGGGATTTT
Found at i:66777002 original size:16 final size:16
Alignment explanation
Indices: 66776982--66777027 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
66776972 AGATGTTATG
66776982 GATTTGGGGATTTCAC
1 GATTTGGGGATTTCAC
* *
66776998 TATTTGGGGAATTTGAC
1 GATTTGGGG-ATTTCAC
*
66777015 GAGTTGGGGATTT
1 GATTTGGGGATTT
66777028 TAAAATTTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 12 0.48
17 13 0.52
ACGTcount: A:0.20, C:0.07, G:0.35, T:0.39
Consensus pattern (16 bp):
GATTTGGGGATTTCAC
Found at i:66780346 original size:43 final size:43
Alignment explanation
Indices: 66780160--66780330 Score: 186
Period size: 43 Copynumber: 4.0 Consensus size: 43
66780150 CATAAAGCTC
* * * *
66780160 ATACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
* * * * * *
66780201 ATATCGATGTCATTGTCCCAGACAAGGTATTACACGAAATCA-A
1 ATA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
*
66780244 ATAACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
1 AT-ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
* *
66780288 ATACAATGCCAATGTCTCAGACATGGTCTTACATGTAATCACA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
66780331 TGGTAATCCT
Statistics
Matches: 107, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
41 3 0.03
42 5 0.05
43 95 0.89
44 4 0.04
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.27
Consensus pattern (43 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
Found at i:66780517 original size:35 final size:35
Alignment explanation
Indices: 66780448--66780517 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
66780438 ACATTCGTAG
**
66780448 CAATTCAATGATAATGAAACATATATAATTCAATT
1 CAATTCAATGATAATGAAACATATATAACACAATT
* *
66780483 CAATTCAATGATAAAT-AAGCATTTATAACACAATT
1 CAATTCAATGAT-AATGAAACATATATAACACAATT
66780518 TAAATACGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 27 0.90
36 3 0.10
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.33
Consensus pattern (35 bp):
CAATTCAATGATAATGAAACATATATAACACAATT
Found at i:66786297 original size:24 final size:24
Alignment explanation
Indices: 66786253--66786311 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 24
66786243 AAAATAAAGA
* *
66786253 AAAAGAAGGAAAAGGAGAAGGAAG
1 AAAAGAAGGAAAAAGAAAAGGAAG
*
66786277 AAAAGAA-GAAAACAGAAAAGGAGG
1 AAAAGAAGGAAAA-AGAAAAGGAAG
66786301 AAATA-AAGGAA
1 AAA-AGAAGGAA
66786312 GAAACAACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 5 0.17
24 20 0.69
25 4 0.14
ACGTcount: A:0.66, C:0.02, G:0.31, T:0.02
Consensus pattern (24 bp):
AAAAGAAGGAAAAAGAAAAGGAAG
Found at i:66797116 original size:40 final size:40
Alignment explanation
Indices: 66796557--66797102 Score: 965
Period size: 40 Copynumber: 13.6 Consensus size: 40
66796547 GATGATAACG
* *
66796557 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
66796597 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
66796637 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
66796677 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
66796717 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
66796757 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
66796797 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
66796837 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
66796877 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGA---GTTACTATATCC
66796920 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
66796960 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
66797000 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
66797040 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
66797080 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
66797103 AACGAGGAGC
Statistics
Matches: 498, Mismatches: 4, Indels: 8
0.98 0.01 0.02
Matches are distributed among these distances:
40 457 0.92
41 1 0.00
43 40 0.08
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:66807242 original size:22 final size:22
Alignment explanation
Indices: 66807212--66807258 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
66807202 ATCAACATCA
66807212 ATAATATCTTTAATATGATTC-GG
1 ATAATATCTTTAA-AT-ATTCAGG
66807235 ATAA-ATCTTTAAATATTCAGG
1 ATAATATCTTTAAATATTCAGG
66807256 ATA
1 ATA
66807259 TGTTACCAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.17
21 7 0.30
22 8 0.35
23 4 0.17
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (22 bp):
ATAATATCTTTAAATATTCAGG
Done.