Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 198 of 297
Found at i:67146246 original size:80 final size:80
Alignment explanation
Indices: 67146097--67146273 Score: 243
Period size: 80 Copynumber: 2.2 Consensus size: 80
67146087 ACCCAAGTAT
* * * * *
67146097 CTTCGGGAT-TTAG-CCAGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGG-TCTTAGTCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGAATATAG
67146160 CAACTCGCACAAATGC
65 CAACTCGCACAAATGC
*
67146176 CTTCGGGTCTTAGTCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGAATATAG
1 CTTCGGGTCTTAGTCCGGATATAA-CAACTAGCACAAATGCCTTCGGGACATAGCCCGAATATAG
*
67146240 CAACTCGCACGAATGC
65 CAACTCGCACAAATGC
*
67146256 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGTCCGG
67146274 TTATCATCCG
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 11 0.13
80 74 0.85
81 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGTCTTAGTCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGAATATAGC
AACTCGCACAAATGC
Found at i:67148554 original size:45 final size:42
Alignment explanation
Indices: 67148504--67148652 Score: 133
Period size: 41 Copynumber: 3.5 Consensus size: 42
67148494 TGTGTTCTCT
* *
67148504 TGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGGTTACGA
1 TGTAAGACCACGTCTGGGACATTGGCATCGATAT-T-TGATT-C-A
* *
67148550 -GTAAGACCATGTTTGGGACATTGGCATCG-TATTTGATTCA
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTCA
* ** **
67148590 TGTAAGACC-CTGTCTGGGACAATGGCATCGATATGAGATAGAA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGAT-TCA
*
67148633 TGTAAGACCACATCTGGGAC
1 TGTAAGACCACGTCTGGGAC
67148653 GTTGACATTG
Statistics
Matches: 86, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
40 1 0.01
41 26 0.30
42 10 0.12
43 19 0.22
44 4 0.05
45 26 0.30
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTCA
Found at i:67148608 original size:41 final size:46
Alignment explanation
Indices: 67148504--67148623 Score: 137
Period size: 41 Copynumber: 2.7 Consensus size: 46
67148494 TGTGTTCTCT
* *
67148504 TGTAAGACCAC-GTCTGGGACGTTGGCATCGATATATGTGGTTACGA
1 TGTAAGACC-CTGTCTGGGACATTGGCATCGATATATGTGATTACGA
* *
67148550 -GTAAGACCATGTTTGGGACATTGGCATCG-TAT-T-TGATT-C-A
1 TGTAAGACCCTGTCTGGGACATTGGCATCGATATATGTGATTACGA
*
67148590 TGTAAGACCCTGTCTGGGACAATGGCATCGATAT
1 TGTAAGACCCTGTCTGGGACATTGGCATCGATAT
67148624 GAGATAGAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
40 1 0.02
41 27 0.42
42 7 0.11
43 1 0.02
44 3 0.05
45 25 0.39
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (46 bp):
TGTAAGACCCTGTCTGGGACATTGGCATCGATATATGTGATTACGA
Found at i:67166888 original size:47 final size:47
Alignment explanation
Indices: 67166837--67166941 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
67166827 TAGTATTAAT
*
67166837 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
67166884 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
67166931 AATGTGATAAG
1 TATGTGATAAG
67166942 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:67167319 original size:13 final size:13
Alignment explanation
Indices: 67167301--67167327 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
67167291 TAATGAAGTA
67167301 TGTGATGAAATAT
1 TGTGATGAAATAT
67167314 TGTGATGAAATAT
1 TGTGATGAAATAT
67167327 T
1 T
67167328 CTTATGTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (13 bp):
TGTGATGAAATAT
Found at i:67169584 original size:68 final size:64
Alignment explanation
Indices: 67169474--67169726 Score: 219
Period size: 68 Copynumber: 3.9 Consensus size: 64
67169464 ATATAGATGG
** * * * *
67169474 TATGTAGCTAGGTCACATGTATAGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACGAGAC
1 TATGTAGCTAGGTCACATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACGAG--
67169537 ATTA
62 A-TA
* *
67169541 TGATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 T-ATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * * *
67169606 TATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGTAGACAAAAGAGCTACGAGA
1 TATGTAGCTAGGTCACATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
67169671 TA
63 TA
* * *
67169673 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTCCACCATGT-GTACAAGAGAGC
1 TA-TGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
67169727 CAAAATTATG
Statistics
Matches: 153, Mismatches: 25, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 25 0.16
65 3 0.02
66 23 0.15
67 32 0.21
68 50 0.33
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24
Consensus pattern (64 bp):
TATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:67174948 original size:17 final size:17
Alignment explanation
Indices: 67174926--67174958 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
67174916 TAATATTTTT
*
67174926 AATTATTAAAAATTAAA
1 AATTATAAAAAATTAAA
67174943 AATTATAAAAAATTAA
1 AATTATAAAAAATTAA
67174959 TTTTTAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AATTATAAAAAATTAAA
Found at i:67178971 original size:154 final size:153
Alignment explanation
Indices: 67178691--67178995 Score: 504
Period size: 154 Copynumber: 2.0 Consensus size: 153
67178681 GTGCGTGGGA
* *
67178691 ATAAGAAAAAATTTATGAGAAATTAATAAAGGCTTCAAAGCGTGTAACATTGCCACTTTTTTTAA
1 ATAAGAAAAAATTTATGAGAAATTAACAAAGGCTTCAAAGCATGTAACATTGCCACTTTTTTTAA
*
67178756 GTTTCTATTCTTGCCCACCTATACTATGGTGTGCAAAAGAGTTACTGGCAAATGAACCTTGAGGA
66 GTGTCTATTC-TGCCCACCTATACTATGGTGTGCAAAAGAGTTACTGGCAAATGAACCTTGAGGA
* *
67178821 TATAATGAAGCCCAATGACTGTCT
130 TACAATAAAGCCCAATGACTGTCT
* *
67178845 ATAAGAATAAATTTATGAGAAATTAACAAAGGCTTCAAGGCATGTAACATTGCCACTTTTTTTAA
1 ATAAGAAAAAATTTATGAGAAATTAACAAAGGCTTCAAAGCATGTAACATTGCCACTTTTTTTAA
67178910 GTGTCTATTC-GCCTCCACCTATACTATGGTGTGCAAAAGAGTTACTGGCAAATGAACCTTGAGG
66 GTGTCTATTCTG-C-CCACCTATACTATGGTGTGCAAAAGAGTTACTGGCAAATGAACCTTGAGG
*
67178974 ATACAATAAAGCCCATTGACTG
129 ATACAATAAAGCCCAATGACTG
67178996 GCTAGGTCTT
Statistics
Matches: 141, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
152 1 0.01
153 1 0.01
154 139 0.99
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (153 bp):
ATAAGAAAAAATTTATGAGAAATTAACAAAGGCTTCAAAGCATGTAACATTGCCACTTTTTTTAA
GTGTCTATTCTGCCCACCTATACTATGGTGTGCAAAAGAGTTACTGGCAAATGAACCTTGAGGAT
ACAATAAAGCCCAATGACTGTCT
Found at i:67187152 original size:76 final size:76
Alignment explanation
Indices: 67187015--67187159 Score: 200
Period size: 76 Copynumber: 1.9 Consensus size: 76
67187005 TACGCATGTT
* * * * * * *
67187015 AGTATAATTGTTTTGACTTGTCCGATGATGCATAGTATGTGCCAATATATTTTTTTTGATTTATC
1 AGTATAATTGCTTTGACTTGTCCAACGATGCACAGTATGTGCCAATAAATTTCTTTCGATTTATC
67187080 CGATGATGTAC
66 CGATGATGTAC
* * *
67187091 AGTATAATTGCTTTGGCTTGTCCAACGATGCACAGTGTGTGCCAATAAATTTCTTTCGATTTATT
1 AGTATAATTGCTTTGACTTGTCCAACGATGCACAGTATGTGCCAATAAATTTCTTTCGATTTATC
67187156 CGAT
66 CGAT
67187160 AATATAGTAC
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
76 59 1.00
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (76 bp):
AGTATAATTGCTTTGACTTGTCCAACGATGCACAGTATGTGCCAATAAATTTCTTTCGATTTATC
CGATGATGTAC
Found at i:67188149 original size:22 final size:23
Alignment explanation
Indices: 67188112--67188164 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
67188102 ACACTAAAGC
67188112 CCAAAACCTGTAAACAAAAAACCCT
1 CCAAAA-C-GTAAACAAAAAACCCT
* *
67188137 -CAAAACGTAAACACAAAACTCT
1 CCAAAACGTAAACAAAAAACCCT
67188159 CCAAAA
1 CCAAAA
67188165 GTGTTATGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
22 14 0.56
23 6 0.24
24 5 0.20
ACGTcount: A:0.55, C:0.30, G:0.04, T:0.11
Consensus pattern (23 bp):
CCAAAACGTAAACAAAAAACCCT
Found at i:67198856 original size:40 final size:40
Alignment explanation
Indices: 67198782--67199049 Score: 355
Period size: 40 Copynumber: 6.6 Consensus size: 40
67198772 AACCCAAGTA
* * *
67198782 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
*
67198821 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
*
67198861 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATG
*
67198904 CCTTCGGGACTTCGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
*
67198944 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATG
*
67198987 CCTTCGGGACTTCGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
67199027 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
67199050 CATCCAAATA
Statistics
Matches: 204, Mismatches: 13, Indels: 23
0.85 0.05 0.10
Matches are distributed among these distances:
39 14 0.07
40 115 0.56
41 1 0.00
43 72 0.35
44 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:67198905 original size:83 final size:83
Alignment explanation
Indices: 67198782--67199045 Score: 455
Period size: 83 Copynumber: 3.2 Consensus size: 83
67198772 AACCCAAGTA
* * * * *
67198782 CCTTCGGGATTTAG-CCGGATATAGC-A--ACTCGCACACATGCCTTCGGGTCTTAGCCCGGATA
1 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATA
67198843 TAGTCACTAGCACAAATG
66 TAGTCACTAGCACAAATG
67198861 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATA
1 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATA
67198926 TAGTCACTAGCACAAATG
66 TAGTCACTAGCACAAATG
67198944 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATA
1 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATA
67199009 TAGTCACTAGCACAAATG
66 TAGTCACTAGCACAAATG
67199027 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
67199046 ATATCATCCA
Statistics
Matches: 176, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
79 13 0.07
80 10 0.06
81 1 0.01
83 152 0.86
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.22
Consensus pattern (83 bp):
CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATA
TAGTCACTAGCACAAATG
Found at i:67199022 original size:123 final size:121
Alignment explanation
Indices: 67198782--67199049 Score: 357
Period size: 123 Copynumber: 2.2 Consensus size: 121
67198772 AACCCAAGTA
* * * *
67198782 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACACATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
67198846 TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
66 TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTA--CGCACAAATG
* *
67198904 CCTTCGGGACTTCGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATA
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
67198968 G-CAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATATAGTC-ACTA-GCACAAATG
65 GTC-ACTA---GCACAAATGCCTTCGGGACTTAGCCCGGATATAG-CAACTACGCACAAATG
67199027 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
67199050 CATCCAAATA
Statistics
Matches: 130, Mismatches: 9, Indels: 13
0.86 0.06 0.09
Matches are distributed among these distances:
122 13 0.10
123 79 0.61
124 1 0.01
126 36 0.28
127 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (121 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTACGCACAAATG
Found at i:67209548 original size:55 final size:55
Alignment explanation
Indices: 67209475--67209581 Score: 178
Period size: 55 Copynumber: 1.9 Consensus size: 55
67209465 AGTCATTTTT
*
67209475 GTACATGGGCAGGCCACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAGTATC
1 GTACATGGGCAAGCCACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAGTATC
* * *
67209530 GTACATGGGCAAGTCACACGGGCGTGTGCCATGGCCGTGTGTTGAAGTCAGT
1 GTACATGGGCAAGCCACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAGT
67209582 GTTGCACACG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.20, C:0.23, G:0.35, T:0.22
Consensus pattern (55 bp):
GTACATGGGCAAGCCACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAGTATC
Found at i:67209610 original size:55 final size:55
Alignment explanation
Indices: 67209489--67209594 Score: 158
Period size: 55 Copynumber: 1.9 Consensus size: 55
67209479 ATGGGCAGGC
* *
67209489 CACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAGTATCGTACATGGGCAAGT
1 CACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAGTATCGCACACGGGCAAGT
* * * *
67209544 CACACGGGCGTGTGCCATGGCCGTGTGTTGAAGTCAGTGTTGCACACGGGC
1 CACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAGTATCGCACACGGGC
67209595 TAAGGACATG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
55 45 1.00
ACGTcount: A:0.19, C:0.25, G:0.34, T:0.23
Consensus pattern (55 bp):
CACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAGTATCGCACACGGGCAAGT
Found at i:67216558 original size:16 final size:15
Alignment explanation
Indices: 67216534--67216563 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
67216524 AACTGTTTTA
67216534 TTACAAATTTCACTC
1 TTACAAATTTCACTC
67216549 TTACATAATTTCACT
1 TTACA-AATTTCACT
67216564 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:67216883 original size:50 final size:50
Alignment explanation
Indices: 67216766--67217052 Score: 299
Period size: 50 Copynumber: 5.7 Consensus size: 50
67216756 CGAAGCTATA
* * * * * *
67216766 TGGTACGCATAGTAGCCTGCACTTAGTACTATACATGCGACC-AACAATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
*
67216815 TGGTACACGTAGTAGCCTGCAGTTAGTACTACACACGTGACCTAACCATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
* * ***
67216865 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CCATC
* * * * * *
67216916 GGGTACGCATAGTAGCCTGCACTTAGTATTACACATGTGACCTAACTATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
67216966 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATC
*** * ** *
67217018 TTAAACACATAGTAGATTGCACATAGTACTACACA
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACA
67217053 TGTGTTCTCA
Statistics
Matches: 197, Mismatches: 35, Indels: 9
0.82 0.15 0.04
Matches are distributed among these distances:
49 37 0.19
50 87 0.44
51 38 0.19
52 35 0.18
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
Found at i:67216949 original size:101 final size:101
Alignment explanation
Indices: 67216824--67217005 Score: 319
Period size: 101 Copynumber: 1.8 Consensus size: 101
67216814 CTGGTACACG
*
67216824 TAGTAGCCTGCAGTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
67216889 AGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
66 AGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
* * * *
67216925 TAGTAGCCTGCACTTAGTATTACACATGTGACCTAACTATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
67216990 AGTACTACACACGTGA
66 AGTACTACACACGTGA
67217006 CCTAAAACCA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
101 76 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
AGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
Found at i:67217003 original size:151 final size:151
Alignment explanation
Indices: 67216767--67217052 Score: 448
Period size: 151 Copynumber: 1.9 Consensus size: 151
67216757 GAAGCTATAT
*
67216767 GGTACGCATAGTAGCCTGCACTTAGTACTATACATGCGACCAACAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACGTAGTAGCC
* * * * *
67216832 TGCAGTTAGTACTACACACGTGACCT-AACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
66 TGCACTTAGTACTACACACGTGACCTAAACCATCTGAAACACATAGTAGACTGCACATAGTACTA
67216896 CACACGTGATTGAAGTTGTCG
131 CACACGTGATTGAAGTTGTCG
* * *
67216917 GGTACGCATAGTAGCCTGCACTTAGTATTACACATGTGACCTAACTATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCTGGTACACGTAGTAGC
* *
67216982 CTGCACTTAGTACTACACACGTGACCTAAAACCATCTTAAACACATAGTAGATTGCACATAGTAC
65 CTGCACTTAGTACTACACACGTGACCT-AAACCATCTGAAACACATAGTAGACTGCACATAGTAC
67217047 TACACA
129 TACACA
67217053 TGTGTTCTCA
Statistics
Matches: 122, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
150 38 0.31
151 48 0.39
153 36 0.30
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.26
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGACCTAAACCATCTGAAACACATAGTAGACTGCACATAGTACTA
CACACGTGATTGAAGTTGTCG
Found at i:67223139 original size:46 final size:46
Alignment explanation
Indices: 67223046--67223254 Score: 212
Period size: 46 Copynumber: 4.5 Consensus size: 46
67223036 CCCTGTCGAA
*
67223046 GCATGTCCCAAACATGTCTTACACTAGC--ACATCTCGTA-GCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCTAACATCTCG-AGGCCGAT
* *
67223090 GCATGTTCCAGACATGT-TTGACACTAGCTAACATCTTGAGGCCGAT
1 GCATGTCCCAGACATGTCTT-ACACTAGCTAACATCTCGAGGCCGAT
* *** * * *
67223136 GCATGTCCTAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCTAACATCTCGAGGCCGAT
* * * *
67223182 GCCATGTCCCAGACATGGTCTTACACTGGCTATCATAAT-GTGGCCGAT
1 G-CATGTCCCAGACAT-GTCTTACACTAGCTAACAT-CTCGAGGCCGAT
67223230 GCATGTCCCAGACATGTCTTACACT
1 GCATGTCCCAGACATGTCTTACACT
67223255 GACACACAAA
Statistics
Matches: 136, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
43 2 0.01
44 23 0.17
45 1 0.01
46 58 0.43
47 29 0.21
48 22 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (46 bp):
GCATGTCCCAGACATGTCTTACACTAGCTAACATCTCGAGGCCGAT
Found at i:67223234 original size:94 final size:90
Alignment explanation
Indices: 67223046--67223254 Score: 253
Period size: 94 Copynumber: 2.3 Consensus size: 90
67223036 CCCTGTCGAA
* *
67223046 GCATGTCCCAAACATGTCTTACACTAGCACATCTCGTAGCCGATGCATGTTCCAGACATGTTTGA
1 GCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATGCATGTCCCAGACATGTTTGA
**
67223111 CACTAGCTAACATCTTGAGGCCGAT
66 CACTAGCTAACATAATGAGGCCGAT
* *
67223136 GCATGTCCTAGACATGTCTTACACTAGC-CCTCGTC-TCAATGCCGATGCCATGTCCCAGACATG
1 GCATGTCCCAGACATGTCTTACACTAGCACATC-TCGT--A-GCCGATG-CATGTCCCAGACAT-
* * *
67223199 GTCTT-ACACTGGCTATCATAATGTGGCCGAT
60 GT-TTGACACTAGCTAACATAATGAGGCCGAT
67223230 GCATGTCCCAGACATGTCTTACACT
1 GCATGTCCCAGACATGTCTTACACT
67223255 GACACACAAA
Statistics
Matches: 102, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
89 4 0.04
90 28 0.27
91 1 0.01
92 7 0.07
93 13 0.13
94 47 0.46
95 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (90 bp):
GCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATGCATGTCCCAGACATGTTTGA
CACTAGCTAACATAATGAGGCCGAT
Found at i:67225492 original size:69 final size:69
Alignment explanation
Indices: 67225397--67225533 Score: 211
Period size: 69 Copynumber: 2.0 Consensus size: 69
67225387 TAACTCATAA
** * * *
67225397 CAATTTTTTTTACAATTTATAATGATTTTCTCAAATCAAAATAGGGGATCTCGAAGTCATTCTGA
1 CAATTTTTTGAACAATTTATAATGATTTTCTCAAATCAAAACAGGGGATCTCGAAGTAATTCTAA
67225462 CTCT
66 CTCT
* *
67225466 CAATTTTTTGAACAATTTATAATGATTTTCTCAACTCAGAACAGGGGATCTCGAAGTAATTCTAA
1 CAATTTTTTGAACAATTTATAATGATTTTCTCAAATCAAAACAGGGGATCTCGAAGTAATTCTAA
67225531 CTC
66 CTC
67225534 CGTCCCACGT
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 61 1.00
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (69 bp):
CAATTTTTTGAACAATTTATAATGATTTTCTCAAATCAAAACAGGGGATCTCGAAGTAATTCTAA
CTCT
Found at i:67232819 original size:80 final size:79
Alignment explanation
Indices: 67232735--67232906 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 79
67232725 GGACTAAGAT
*
67232735 CCGAAGGCATTTGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATGACAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
67232799 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * ** * * * *
67232815 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
67232880 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
67232894 CCGAAGGCATTTG
1 CCGAAGGCATTTG
67232907 AACGAGGAGC
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 38 0.49
80 37 0.47
81 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:67232886 original size:39 final size:39
Alignment explanation
Indices: 67232682--67232904 Score: 200
Period size: 40 Copynumber: 5.6 Consensus size: 39
67232672 TTGAATGCTG
* * * * *
67232682 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
67232722 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
67232761 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* **
67232802 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
67232842 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
67232881 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
67232905 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
39 39 0.25
40 102 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:67232924 original size:79 final size:80
Alignment explanation
Indices: 67232757--67232939 Score: 190
Period size: 79 Copynumber: 2.3 Consensus size: 80
67232747 GTGCGAGATA
* * * *
67232757 CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
1 CAAA-TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGG
** ** *
67232822 CATTCGTGCGAGTTGT
65 CATTCGAACGAGGAGC
* * * * *
67232838 TAAATCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 CAAATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
*
67232902 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
* *
67232917 CATATCC-GGTTAAATCCCGAAGG
1 CAAATCCGGGTTAAGTCCCGAAGG
67232940 TACGTGATTT
Statistics
Matches: 83, Mismatches: 19, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
78 14 0.17
79 48 0.58
80 18 0.22
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
CAAATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:67236094 original size:26 final size:26
Alignment explanation
Indices: 67236065--67236124 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
67236055 AGTAATAATT
* *
67236065 AGGAAGTTCACAAAGAACTTTTAACC
1 AGGAAGCTCACAAAGAACCTTTAACC
* *
67236091 AGGAAGCTCACAAAGAGCCTTTAATC
1 AGGAAGCTCACAAAGAACCTTTAACC
67236117 AGG-AGCTC
1 AGGAAGCTC
67236125 TGAATAGCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
25 5 0.17
26 25 0.83
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (26 bp):
AGGAAGCTCACAAAGAACCTTTAACC
Found at i:67240591 original size:20 final size:19
Alignment explanation
Indices: 67240566--67240610 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
67240556 AAGGACTAAA
67240566 ATGAAAAGTCGTAAAATTTT
1 ATGAAAAGTC-TAAAATTTT
* *
67240586 ATGAAAAATTCTGAAATTTT
1 ATG-AAAAGTCTAAAATTTT
67240606 ATGAA
1 ATGAA
67240611 TATATGTGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 2 0.09
20 14 0.64
21 6 0.27
ACGTcount: A:0.47, C:0.04, G:0.13, T:0.36
Consensus pattern (19 bp):
ATGAAAAGTCTAAAATTTT
Found at i:67240866 original size:37 final size:37
Alignment explanation
Indices: 67240825--67240898 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
67240815 CTAGACAACA
*
67240825 CTAATTCGAGGTTAGATCGAGGAAAAGAAAAGATTTC
1 CTAATTCAAGGTTAGATCGAGGAAAAGAAAAGATTTC
67240862 CTAATTCAAGGTTAGATCGAGGAAAAGAAAAGATTTC
1 CTAATTCAAGGTTAGATCGAGGAAAAGAAAAGATTTC
67240899 AAATTAGTAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.42, C:0.11, G:0.23, T:0.24
Consensus pattern (37 bp):
CTAATTCAAGGTTAGATCGAGGAAAAGAAAAGATTTC
Found at i:67246720 original size:31 final size:31
Alignment explanation
Indices: 67246682--67246742 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
67246672 GTGTTTTCAT
67246682 ATAGTCAATGGATCCCAGCAGAGCAATGGTG
1 ATAGTCAATGGATCCCAGCAGAGCAATGGTG
* * *
67246713 ATAGTCAATGGATCCCGGTAGAGCAGTGGT
1 ATAGTCAATGGATCCCAGCAGAGCAATGGT
67246743 AGATGCTGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.30, C:0.18, G:0.31, T:0.21
Consensus pattern (31 bp):
ATAGTCAATGGATCCCAGCAGAGCAATGGTG
Found at i:67256275 original size:25 final size:25
Alignment explanation
Indices: 67256247--67256446 Score: 130
Period size: 25 Copynumber: 7.3 Consensus size: 25
67256237 TGCTAAATAA
67256247 ATTAAAAAAATAAAGAACTATACAC
1 ATTAAAAAAATAAAGAACTATACAC
* * * *
67256272 ATTAAAAAATAAAAAAGCTAATGCTAAATAA
1 ATT-AAAAA-AATAAAG--AA--CTATACAC
67256303 ATTAAAAAAATAAAGAACTATACAC
1 ATTAAAAAAATAAAGAACTATACAC
* * * *
67256328 ATTAAAAAATAAAAAAGCTAATGCTAAATAA
1 ATT-AAAAA-AATAAAG--AA--CTATACAC
67256359 ATTAAAAAAATAAAGAACTATACAC
1 ATTAAAAAAATAAAGAACTATACAC
* * * *
67256384 ATTAAAAAATAAAAAAGCTAATGCTAAATAA
1 ATT-AAAAA-AATAAAG--AA--CTATACAC
67256415 ATTAAAAAAATAAAGAACTATACAC
1 ATTAAAAAAATAAAGAACTATACAC
67256440 ATTAAAA
1 ATTAAAA
67256447 TATAAAAAAG
Statistics
Matches: 133, Mismatches: 24, Indels: 36
0.69 0.12 0.19
Matches are distributed among these distances:
25 31 0.23
26 15 0.11
27 24 0.18
29 24 0.18
30 15 0.11
31 24 0.18
ACGTcount: A:0.65, C:0.09, G:0.05, T:0.21
Consensus pattern (25 bp):
ATTAAAAAAATAAAGAACTATACAC
Found at i:67256286 original size:31 final size:31
Alignment explanation
Indices: 67256251--67256455 Score: 107
Period size: 31 Copynumber: 7.2 Consensus size: 31
67256241 AAATAAATTA
*
67256251 AAAAAATAAAGAACTATACACATTAAAAAAT
1 AAAAAATAAAGAACTATACACATTAAAATAT
* *
67256282 AAAAAAGCTAATG--C--TA-A-A-TAAATTA-
1 AAAAAA--TAAAGAACTATACACATTAAAATAT
*
67256307 AAAAAATAAAGAACTATACACATTAAAAAAT
1 AAAAAATAAAGAACTATACACATTAAAATAT
* *
67256338 AAAAAAGCTAATG--C--TA-A-A-TAAATTA-
1 AAAAAA--TAAAGAACTATACACATTAAAATAT
*
67256363 AAAAAATAAAGAACTATACACATTAAAAAAT
1 AAAAAATAAAGAACTATACACATTAAAATAT
* *
67256394 AAAAAAGCTAATG--C--TA-A-A-TAAATTA-
1 AAAAAA--TAAAGAACTATACACATTAAAATAT
67256419 AAAAAATAAAGAACTATACACATTAAAATAT
1 AAAAAATAAAGAACTATACACATTAAAATAT
67256450 AAAAAA
1 AAAAAA
67256456 GCTTAATTGA
Statistics
Matches: 127, Mismatches: 17, Indels: 60
0.62 0.08 0.29
Matches are distributed among these distances:
23 12 0.09
25 21 0.17
26 15 0.12
27 9 0.07
28 6 0.05
29 9 0.07
30 16 0.13
31 27 0.21
33 12 0.09
ACGTcount: A:0.65, C:0.09, G:0.05, T:0.21
Consensus pattern (31 bp):
AAAAAATAAAGAACTATACACATTAAAATAT
Found at i:67256301 original size:56 final size:56
Alignment explanation
Indices: 67256235--67256458 Score: 439
Period size: 56 Copynumber: 4.0 Consensus size: 56
67256225 TTTAAAAATG
67256235 AATGCTAAATAAATTAAAAAAATAAAGAACTATACACATTAAAAAATAAAAAAGCT
1 AATGCTAAATAAATTAAAAAAATAAAGAACTATACACATTAAAAAATAAAAAAGCT
67256291 AATGCTAAATAAATTAAAAAAATAAAGAACTATACACATTAAAAAATAAAAAAGCT
1 AATGCTAAATAAATTAAAAAAATAAAGAACTATACACATTAAAAAATAAAAAAGCT
67256347 AATGCTAAATAAATTAAAAAAATAAAGAACTATACACATTAAAAAATAAAAAAGCT
1 AATGCTAAATAAATTAAAAAAATAAAGAACTATACACATTAAAAAATAAAAAAGCT
*
67256403 AATGCTAAATAAATTAAAAAAATAAAGAACTATACACATTAAAATATAAAAAAGCT
1 AATGCTAAATAAATTAAAAAAATAAAGAACTATACACATTAAAAAATAAAAAAGCT
67256459 TAATTGAAAT
Statistics
Matches: 167, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 167 1.00
ACGTcount: A:0.64, C:0.09, G:0.05, T:0.22
Consensus pattern (56 bp):
AATGCTAAATAAATTAAAAAAATAAAGAACTATACACATTAAAAAATAAAAAAGCT
Found at i:67256524 original size:112 final size:109
Alignment explanation
Indices: 67256235--67256514 Score: 318
Period size: 112 Copynumber: 2.5 Consensus size: 109
67256225 TTTAAAAATG
* * * *
67256235 AATGCTAAATAAATTAAAAAAATAAAGAACTATACACATTAAAAAATAAAAAAGCTAATGCTAAA
1 AATGC-AAATAAATCAAAAAAATAAAG-ACGATA-ACATTAAAAAATAAAAAAACCAATGCTAAA
67256300 TAAATTAAAAAAATAAAGAACTATACACATTAAAAAATAAAAAAGCT
63 TAAATTAAAAAAATAAAGAACTATACACATTAAAAAATAAAAAAGCT
* * * *
67256347 AATGCTAAATAAATTAAAAAAATAAAGAACTATACACATTAAAAAATAAAAAAGCTAATGCTAAA
1 AATGC-AAATAAATCAAAAAAATAAAG-ACGATA-ACATTAAAAAATAAAAAAACCAATGCTAAA
*
67256412 TAAATTAAAAAAATAAAGAACTATACACATTAAAATATAAAAAAGCTT
63 TAAATTAAAAAAATAAAGAACTATACACATTAAAAAATAAAAAAGC-T
** * *
67256460 AATTG-AAATGAAATCAAATTAA-AAAG-GGAT-A-ATTAACAAATAAAATAAACCAATG
1 AA-TGCAAAT-AAATCAAAAAAATAAAGACGATAACATTAAAAAATAAAA-AAACCAATG
67256515 AAACATAAAT
Statistics
Matches: 155, Mismatches: 9, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
107 13 0.08
108 8 0.05
110 2 0.01
112 118 0.76
113 12 0.08
114 2 0.01
ACGTcount: A:0.63, C:0.09, G:0.06, T:0.22
Consensus pattern (109 bp):
AATGCAAATAAATCAAAAAAATAAAGACGATAACATTAAAAAATAAAAAAACCAATGCTAAATAA
ATTAAAAAAATAAAGAACTATACACATTAAAAAATAAAAAAGCT
Found at i:67264311 original size:44 final size:44
Alignment explanation
Indices: 67264261--67264345 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
67264251 TATATATTAG
* *
67264261 GCATCTGAGCTCATT-AAGTTGGCCCAAGTTCATTATGGATGCGA
1 GCATCTGAACTCATTGAA-TTGGCCCAAGTTCATAATGGATGCGA
* * *
67264305 GCATCTGAACTCGTTGAATTGGTCCGAGTTCATAATGGATG
1 GCATCTGAACTCATTGAATTGGCCCAAGTTCATAATGGATG
67264346 TGATACATGT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 33 0.94
45 2 0.06
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.31
Consensus pattern (44 bp):
GCATCTGAACTCATTGAATTGGCCCAAGTTCATAATGGATGCGA
Found at i:67267003 original size:27 final size:27
Alignment explanation
Indices: 67266981--67267275 Score: 394
Period size: 27 Copynumber: 10.9 Consensus size: 27
67266971 AAAATTATTA
*
67266981 AAATACCCCTGTATGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
67267008 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
67267035 AAATACCCTTGTAGGGTAGAAATACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
67267062 AAATATCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
67267089 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
67267116 AAATACCCTTGTAGGGTAGAAATACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
67267143 AAATATCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
67267170 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * *
67267197 AAATACCCTTGTAGGGAAGAAATA-TCG
1 AAATACCCCTGTAGGGTAGAATTACT-G
* *
67267224 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * * * *
67267251 AGATGCCCTTGTGGGGTAAAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
67267276 CATTTTGCCC
Statistics
Matches: 233, Mismatches: 33, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
27 233 1.00
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTG
Found at i:67267029 original size:81 final size:81
Alignment explanation
Indices: 67266981--67267276 Score: 477
Period size: 81 Copynumber: 3.7 Consensus size: 81
67266971 AAAATTATTA
* *
67266981 AAATACCCCTGTATGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
1 AAATATCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
67267046 TAGGGTAGAAATACTG
66 TAGGGTAGAAATACTG
67267062 AAATATCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
1 AAATATCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
67267127 TAGGGTAGAAATACTG
66 TAGGGTAGAAATACTG
67267143 AAATATCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
1 AAATATCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
*
67267208 TAGGGAAGAAATA-TCG
66 TAGGGTAGAAATACT-G
* * * * * * * *
67267224 AAATACCCCTATAGGGTAGAATTACCGAGATGCCCTTGTGGGGTAAAATTACC
1 AAATATCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACC
67267277 ATTTTGCCCC
Statistics
Matches: 203, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
80 1 0.00
81 202 1.00
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.25
Consensus pattern (81 bp):
AAATATCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
TAGGGTAGAAATACTG
Found at i:67267284 original size:27 final size:27
Alignment explanation
Indices: 67267254--67267319 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
67267244 ATTACCGAGA
*
67267254 TGCCCTTGTGGGGTAAAATTACCATTT
1 TGCCCTTGTGGGGTAAAATGACCATTT
* * * *
67267281 TGCCCCTAG-GGTGTCAAATGACTATTT
1 TG-CCCTTGTGGGGTAAAATGACCATTT
67267308 TGCCCTTGTGGG
1 TGCCCTTGTGGG
67267320 CAAGTGACTG
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
26 5 0.17
27 20 0.67
28 5 0.17
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.35
Consensus pattern (27 bp):
TGCCCTTGTGGGGTAAAATGACCATTT
Found at i:67267842 original size:22 final size:22
Alignment explanation
Indices: 67267790--67267853 Score: 78
Period size: 22 Copynumber: 2.9 Consensus size: 22
67267780 GCCAATTATT
*
67267790 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTTTGTGCCAAC
*
67267812 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
67267834 CTGATTATGG-TTGTGTGCCA
1 CTGATTATGGCTT-TGTGCCA
67267854 TTATTGTGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
21 3 0.08
22 32 0.89
23 1 0.03
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:67268119 original size:6 final size:6
Alignment explanation
Indices: 67268110--67268215 Score: 65
Period size: 6 Copynumber: 17.2 Consensus size: 6
67268100 TTGCATTCAC
*
67268110 ATTCTG ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
* * * ** * *
67268159 -TCACCTA ATTCTG ATTCTA ATTCAA ATTTTG ATTCTG -TCACCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
67268209 ATTCTG A
1 ATTCTG A
67268216 ATCTCATTTT
Statistics
Matches: 77, Mismatches: 14, Indels: 18
0.71 0.13 0.17
Matches are distributed among these distances:
5 4 0.05
6 62 0.81
7 8 0.10
8 3 0.04
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.45
Consensus pattern (6 bp):
ATTCTG
Found at i:67268141 original size:25 final size:25
Alignment explanation
Indices: 67268113--67268181 Score: 102
Period size: 25 Copynumber: 2.8 Consensus size: 25
67268103 CATTCACATT
*
67268113 CTGATTCTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGATTCTGTCAC
*
67268138 CTGATACTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
* *
67268163 CTAATTCTGATTCTAATTC
1 CTGATTCTGATTCTGATTC
67268182 AAATTTTGAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.20, C:0.22, G:0.13, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTCAC
Found at i:67268169 original size:19 final size:19
Alignment explanation
Indices: 67268147--67268214 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
67268137 CCTGATACTG
67268147 ATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGTCACCTA
*
67268166 ATTCTGATTCTAATTCA---A
1 ATTCTGATTCT--GTCACCTA
* *
67268184 ATTTTGATTCTGTCACCTG
1 ATTCTGATTCTGTCACCTA
67268203 ATTCTGATTCTG
1 ATTCTGATTCTG
67268215 AATCTCATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
16 3 0.08
18 11 0.28
19 22 0.56
21 3 0.08
ACGTcount: A:0.22, C:0.21, G:0.12, T:0.46
Consensus pattern (19 bp):
ATTCTGATTCTGTCACCTA
Found at i:67268225 original size:37 final size:36
Alignment explanation
Indices: 67268151--67268231 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 36
67268141 ATACTGATTC
67268151 TGATTCTGTCACCTAATTCTGATTCTAATTCAAATTT
1 TGATTCTGTCACCTAATTCTGATTCTAATTC-AATTT
*
67268188 TGATTCTGTCACCTGATTCTGATTCTGAATCTC-ATTT
1 TGATTCTGTCACCTAATTCTGATTCT-AAT-TCAATTT
*
67268225 TTATTCT
1 TGATTCT
67268232 AGTTCTGATA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
37 35 0.88
38 3 0.08
39 2 0.05
ACGTcount: A:0.22, C:0.20, G:0.10, T:0.48
Consensus pattern (36 bp):
TGATTCTGTCACCTAATTCTGATTCTAATTCAATTT
Found at i:67273036 original size:19 final size:19
Alignment explanation
Indices: 67272995--67273039 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
67272985 CAGGCTGAAG
* * *
67272995 ACACGGGCATGTCCAAGCT
1 ACACGGGCATCTCCAACCC
*
67273014 ACACGGGCATCTGCAACCC
1 ACACGGGCATCTCCAACCC
67273033 ACACGGG
1 ACACGGG
67273040 TGTGTGACTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.27, C:0.36, G:0.27, T:0.11
Consensus pattern (19 bp):
ACACGGGCATCTCCAACCC
Found at i:67275103 original size:49 final size:49
Alignment explanation
Indices: 67275016--67275158 Score: 227
Period size: 49 Copynumber: 3.0 Consensus size: 49
67275006 CTTTCACTTC
* * *
67275016 GCCATTCGGCCTTGT--CATATATATATACTTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACATTG
*
67275063 GCCATTCGGCCTTATCACATTTACATACACTTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACATTG
*
67275112 GCCATTCGGCCTTATCACCTATACATACACTTTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACAT
67275159 AAAATCCTAA
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
47 14 0.16
49 74 0.84
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.35
Consensus pattern (49 bp):
GCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACATTG
Found at i:67277821 original size:57 final size:57
Alignment explanation
Indices: 67277751--67277859 Score: 164
Period size: 57 Copynumber: 1.9 Consensus size: 57
67277741 ATGTCTACTG
* *
67277751 ACTGATCTCGCACACATAGTGCTCGGTTGAAGAACTCACACACATAGTGCCTCAACT
1 ACTGATCTCGCACACATAGTGCTCGATTGAAGAACTCACACACACAGTGCCTCAACT
* * **
67277808 ACTGATCTGGCACACATAGTGCTCGATTGAAGAGCTTGCACACACAGTGCCT
1 ACTGATCTCGCACACATAGTGCTCGATTGAAGAACTCACACACACAGTGCCT
67277860 TATAATTCCA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 46 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (57 bp):
ACTGATCTCGCACACATAGTGCTCGATTGAAGAACTCACACACACAGTGCCTCAACT
Found at i:67277935 original size:40 final size:40
Alignment explanation
Indices: 67277867--67278058 Score: 291
Period size: 40 Copynumber: 4.8 Consensus size: 40
67277857 CCTTATAATT
* * **
67277867 CCAGCACGAATGC-CTTCGAGG-TTTAGCCC-GAGTATATTA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGA-CATAACA
67277906 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
67277946 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
* *
67277986 CCAGCACGAATGCTCTTCAGGACTTAGCCCAGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
67278026 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGA
67278059 TATATAACTC
Statistics
Matches: 142, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 15 0.11
40 125 0.88
41 2 0.01
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.19
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
Found at i:67279743 original size:49 final size:49
Alignment explanation
Indices: 67279656--67279847 Score: 325
Period size: 49 Copynumber: 4.0 Consensus size: 49
67279646 CTTCCACTTC
* * *
67279656 GCCATTCGGCCTTGT--CATATATATATACTTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACATTG
*
67279703 GCCATTCGGCCTTATCACATTTACATACACTTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACATTG
*
67279752 GCCATTCGGCCTTATCACATTTACATACACTTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACATTG
67279801 GCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACAT
67279848 AAAATCCTAA
Statistics
Matches: 138, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
47 14 0.10
49 124 0.90
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.35
Consensus pattern (49 bp):
GCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACATTG
Found at i:67279746 original size:27 final size:27
Alignment explanation
Indices: 67279716--67279847 Score: 81
Period size: 27 Copynumber: 5.3 Consensus size: 27
67279706 ATTCGGCCTT
67279716 ATCACATTTACATACACTTTCACATTC
1 ATCACATTTACATACACTTTCACATTC
** * *
67279743 ATCACATTGGC---CA--TTCGGCCTT-
1 ATCACATTTACATACACTTTC-ACATTC
67279765 ATCACATTTACATACACTTTCACATTC
1 ATCACATTTACATACACTTTCACATTC
** * *
67279792 ATCACATTGGC---CA--TTCGGCCTT-
1 ATCACATTTACATACACTTTC-ACATTC
*
67279814 ATCACATATACATACACTTTCACATTC
1 ATCACATTTACATACACTTTCACATTC
67279841 ATCACAT
1 ATCACAT
67279848 AAAATCCTAA
Statistics
Matches: 74, Mismatches: 17, Indels: 28
0.62 0.14 0.24
Matches are distributed among these distances:
22 23 0.31
23 6 0.08
24 4 0.05
25 4 0.05
26 6 0.08
27 31 0.42
ACGTcount: A:0.30, C:0.30, G:0.06, T:0.34
Consensus pattern (27 bp):
ATCACATTTACATACACTTTCACATTC
Found at i:67286690 original size:43 final size:43
Alignment explanation
Indices: 67286629--67286729 Score: 184
Period size: 43 Copynumber: 2.3 Consensus size: 43
67286619 CTATTCGGGC
67286629 CTTCGAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCAGG
1 CTTCGAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCAGG
* *
67286672 CTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCGGG
1 CTTCGAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCAGG
67286715 CTTCGAGCCTAGCAG
1 CTTCGAGCCTAGCAG
67286730 CCGTAATGCC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (43 bp):
CTTCGAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCAGG
Found at i:67287339 original size:16 final size:18
Alignment explanation
Indices: 67287308--67287340 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
67287298 AACTCGTCAC
67287308 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
67287326 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
67287341 AATTTGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:67294301 original size:93 final size:93
Alignment explanation
Indices: 67294173--67294343 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
67294163 GCCCCTAAGT
* * * *
67294173 GAACTCGGACTCAACTCAATGAGCTTGGACGTTCGCATCCATAAGTGAACTCGGACTTAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTTGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
67294238 TGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
67294266 GAACTCGGACTCAACTCAACGAG-TTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTT-GAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
67294330 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
67294344 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTTGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67294359 original size:46 final size:46
Alignment explanation
Indices: 67294168--67294345 Score: 166
Period size: 46 Copynumber: 3.8 Consensus size: 46
67294158 AACCCGCCCC
* *
67294168 TAAGTGAACTCGGACTCAACTCAATGAGCTT-GGACGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACGCTCGCATCCA
* * * *
67294214 TAAGTGAACTCGGACTTAACTCAATGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CATCCA
* * * ** *
67294262 TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCA
*
67294307 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
67294346 AACCATCCTA
Statistics
Matches: 105, Mismatches: 19, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 4 0.04
46 63 0.60
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCA
Found at i:67297199 original size:49 final size:49
Alignment explanation
Indices: 67296978--67298119 Score: 2060
Period size: 49 Copynumber: 23.6 Consensus size: 49
67296968 CCCTTCGGGA
* * * * *
67296978 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67297025 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67297072 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67297119 CTTATCACATATATA-A-ACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67297166 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67297215 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67297264 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67297313 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67297362 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67297411 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67297460 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67297509 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67297558 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67297607 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67297656 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67297705 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67297754 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67297803 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67297852 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67297901 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67297948 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67297995 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67298044 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67298093 CTTATCAC--ATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
67298120 TATTCAAATA
Statistics
Matches: 1070, Mismatches: 17, Indels: 16
0.97 0.02 0.01
Matches are distributed among these distances:
46 1 0.00
47 245 0.23
48 2 0.00
49 822 0.77
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67297910 original size:22 final size:22
Alignment explanation
Indices: 67297882--67297957 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
67297872 TTTCACATTC
67297882 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
67297904 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
67297928 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
67297951 ATCACAT
1 ATCACAT
67297958 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:67306723 original size:46 final size:45
Alignment explanation
Indices: 67306654--67306827 Score: 147
Period size: 46 Copynumber: 3.8 Consensus size: 45
67306644 GTAACCCGCC
* *
67306654 CCTAAGTGAACTCAGACACAACTCAACGAGCTCGGGTGTTCACAT
1 CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGGGTGTTCACAT
* *
67306699 CCATAAGTGAACTCGGACTCAACTCAAAGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCAGACTCAACTCAACGAGTTCGG--G--T-GTTCACAT
* * * **** *
67306749 -CTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGGGTGTTCACAT
*
67306792 CCGTAAGTGAATTCAGACTCAACTCAACGAGTTCGG
1 CC-TAAGTGAACTCAGACTCAACTCAACGAGTTCGG
67306828 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 17, Indels: 19
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 4 0.04
46 54 0.53
47 26 0.25
48 3 0.03
49 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGGGTGTTCACAT
Found at i:67306773 original size:93 final size:93
Alignment explanation
Indices: 67306661--67306831 Score: 234
Period size: 93 Copynumber: 1.8 Consensus size: 93
67306651 GCCCCTAAGT
**** *
67306661 GAACTCAGACACAACTCAACGAGCTCGGGTGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACACAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
67306726 AGAGTTCGGATGCCTAGTTACATCTCAC
66 AGAGTTCGGATGCCTAGTTACATCTCAC
* * * * * *
67306754 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAATTCAGACTCAACTCAA
1 GAACTCAGACACAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
*
67306819 CGAGTTCGGATGC
66 AGAGTTCGGATGC
67306832 TCAACCATCC
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
93 66 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACACAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
AGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67308956 original size:43 final size:43
Alignment explanation
Indices: 67308895--67309010 Score: 180
Period size: 43 Copynumber: 2.7 Consensus size: 43
67308885 CTATTCGAGC
67308895 CTTCGAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCAGG
1 CTTCGAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCAGG
*
67308938 CTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGG
1 CTTCGAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCAGG
* * * *
67308981 CTTCAAGCCTAACAGGC-GTAATACCAGTGA
1 CTTCGAGCCTAGCAGGCTATAATGCCAGTGA
67309011 ATGAGTTCAG
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 10 0.15
43 57 0.85
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.24
Consensus pattern (43 bp):
CTTCGAGCCTAGCAGGCTATAATGCCAGTGAGTTAATATCAGG
Found at i:67313218 original size:24 final size:24
Alignment explanation
Indices: 67313179--67313253 Score: 114
Period size: 24 Copynumber: 3.1 Consensus size: 24
67313169 AAGTCTGTCA
*
67313179 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
67313203 GGATAGGATTTCGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
67313227 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
67313251 GGA
1 GGA
67313254 CAACGGTGTG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.31, C:0.04, G:0.41, T:0.24
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:67314704 original size:27 final size:26
Alignment explanation
Indices: 67314664--67314770 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
67314654 AGGAAGCGTC
*
67314664 CTGGTGGCTA-TGCCACAATTATCTGAT
1 CTGGTGGC-ACTGCCAC-ATTATCTGTT
67314691 CTGGTGGCACTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAT-TATCTGTT
**
67314718 CTGGTGGCTTTGCCACAATTATCTGTT
1 CTGGTGGCACTGCCAC-ATTATCTGTT
* *
67314745 CTGGTGACACTGTCACATTATCTGTT
1 CTGGTGGCACTGCCACATTATCTGTT
67314771 TTAGCAACCA
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
26 13 0.19
27 55 0.79
28 2 0.03
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
CTGGTGGCACTGCCACATTATCTGTT
Found at i:67314748 original size:54 final size:53
Alignment explanation
Indices: 67314664--67314770 Score: 169
Period size: 54 Copynumber: 2.0 Consensus size: 53
67314654 AGGAAGCGTC
*
67314664 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACAT-TATCTGTT
* * *
67314718 CTGGTGGCTTTGCCACAATTATCTGTTCTGGTGACACTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACATTATCTGTT
67314771 TTAGCAACCA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
53 8 0.16
54 41 0.84
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACATTATCTGTT
Found at i:67318080 original size:40 final size:40
Alignment explanation
Indices: 67317975--67318120 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
67317965 GCTACTCGTT
* *
67317975 CAAATGCCTTCGGGACATAG-CCGGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
67318015 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
67318055 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
67318096 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67318121 CATCATTCAA
Statistics
Matches: 92, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
39 3 0.03
40 72 0.78
41 17 0.18
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:67321501 original size:42 final size:41
Alignment explanation
Indices: 67321397--67321537 Score: 124
Period size: 43 Copynumber: 3.3 Consensus size: 41
67321387 ATCTGAGATA
* *
67321397 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGATATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCGATTGA-ATT
*
67321439 TACGTATAAGACCATGTCTGGGACATC-GGCATCGTATTTG-ATT
1 T-CGTGTAAGACCATGTCTGGGACA-CAGGCATCG-A-TTGAATT
* * * *
67321482 TCGTGTAAGACCCTATCTGGGATAGAGGCATCGATATTGAATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCG--ATTGAATT
* *
67321525 ACATGTAAGACCA
1 TCGTGTAAGACCA
67321538 CATCAGGGAT
Statistics
Matches: 81, Mismatches: 11, Indels: 13
0.77 0.10 0.12
Matches are distributed among these distances:
42 30 0.37
43 46 0.57
44 2 0.02
45 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACACAGGCATCGATTGAATT
Found at i:67324992 original size:28 final size:29
Alignment explanation
Indices: 67324930--67324993 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
67324920 ACTTTTTGTA
* * *
67324930 TATTTAAAATTTAGTCTCTCTACTTTTAT
1 TATTAAAAATTTAGTCTCTATACTTTTAC
*
67324959 TTTTAAAAATTTAGTCAT-TATACTTTT-C
1 TATTAAAAATTTAGTC-TCTATACTTTTAC
67324987 TATTAAA
1 TATTAAA
67324994 TACGTTGGTG
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
28 6 0.21
29 22 0.76
30 1 0.03
ACGTcount: A:0.33, C:0.11, G:0.03, T:0.53
Consensus pattern (29 bp):
TATTAAAAATTTAGTCTCTATACTTTTAC
Found at i:67327878 original size:43 final size:43
Alignment explanation
Indices: 67327826--67327912 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
67327816 TTTACTTAGA
67327826 AAAACTACCATTCAGACTATAATTTCAACTTGTATGAATTATG
1 AAAACTACCATTCAGACTATAATTTCAACTTGTATGAATTATG
67327869 AAAACTACCATTCAGACTATAATTTCAACTTGTATGAATTATG
1 AAAACTACCATTCAGACTATAATTTCAACTTGTATGAATTATG
67327912 A
1 A
67327913 TTCACTTAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.34
Consensus pattern (43 bp):
AAAACTACCATTCAGACTATAATTTCAACTTGTATGAATTATG
Found at i:67328036 original size:107 final size:107
Alignment explanation
Indices: 67327908--67328121 Score: 428
Period size: 107 Copynumber: 2.0 Consensus size: 107
67327898 TTGTATGAAT
67327908 TATGATTCACTTAAATCTTCTTTCTTTTTTTAACTATCAAGGAGTACTGTCAACAAAGCTTCCTT
1 TATGATTCACTTAAATCTTCTTTCTTTTTTTAACTATCAAGGAGTACTGTCAACAAAGCTTCCTT
67327973 AGGCAATGGCCAGGAGCTTTACTTGGTTTCATTACTTTTTTA
66 AGGCAATGGCCAGGAGCTTTACTTGGTTTCATTACTTTTTTA
67328015 TATGATTCACTTAAATCTTCTTTCTTTTTTTAACTATCAAGGAGTACTGTCAACAAAGCTTCCTT
1 TATGATTCACTTAAATCTTCTTTCTTTTTTTAACTATCAAGGAGTACTGTCAACAAAGCTTCCTT
67328080 AGGCAATGGCCAGGAGCTTTACTTGGTTTCATTACTTTTTTA
66 AGGCAATGGCCAGGAGCTTTACTTGGTTTCATTACTTTTTTA
67328122 GGTTCATCAA
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
107 107 1.00
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.42
Consensus pattern (107 bp):
TATGATTCACTTAAATCTTCTTTCTTTTTTTAACTATCAAGGAGTACTGTCAACAAAGCTTCCTT
AGGCAATGGCCAGGAGCTTTACTTGGTTTCATTACTTTTTTA
Found at i:67343439 original size:28 final size:28
Alignment explanation
Indices: 67343382--67344262 Score: 1658
Period size: 28 Copynumber: 31.5 Consensus size: 28
67343372 TAAATTGTGC
* *
67343382 AGCACTAAGTGTGCGA-ATTGAATATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343409 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
67343437 AGCACTAAGTGTGCAAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343465 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343493 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343521 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343549 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343577 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343605 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343633 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343661 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343689 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343717 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343745 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343773 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343801 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343829 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343857 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343885 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343913 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343941 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343969 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67343997 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67344025 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67344053 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67344081 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67344109 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67344137 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67344165 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
67344193 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
67344221 AGCACTAGGTGTGCGAG-CTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
67344248 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67344263 GACTTAATAT
Statistics
Matches: 841, Mismatches: 12, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
27 37 0.04
28 804 0.96
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:67345250 original size:84 final size:84
Alignment explanation
Indices: 67345136--67345302 Score: 316
Period size: 84 Copynumber: 2.0 Consensus size: 84
67345126 GAGTAAACAC
67345136 AGATACTGGCAGCAGCAGTGACATGAGATTGAAAAATCACTAAAAATAGTAGGAGTGGAATTAAT
1 AGATACTGGCAGCAGCAGTGACATGAGATTGAAAAATCACTAAAAATAGTAGGAGTGGAATTAAT
*
67345201 TGATGAATAAATTATGTAT
66 TAATGAATAAATTATGTAT
*
67345220 AGATGCTGGCAGCAGCAGTGACATGAGATTGAAAAATCACTAAAAATAGTAGGAGTGGAATTAAT
1 AGATACTGGCAGCAGCAGTGACATGAGATTGAAAAATCACTAAAAATAGTAGGAGTGGAATTAAT
67345285 TAATGAATAAATTATGTA
66 TAATGAATAAATTATGTA
67345303 ATCGAAGTTC
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 81 1.00
ACGTcount: A:0.43, C:0.08, G:0.23, T:0.26
Consensus pattern (84 bp):
AGATACTGGCAGCAGCAGTGACATGAGATTGAAAAATCACTAAAAATAGTAGGAGTGGAATTAAT
TAATGAATAAATTATGTAT
Found at i:67345736 original size:106 final size:106
Alignment explanation
Indices: 67345551--67345761 Score: 395
Period size: 106 Copynumber: 2.0 Consensus size: 106
67345541 GTACAGGGAG
67345551 ATATCCAGGTCGTAATGCGCAAAGGTCAGTGTAGTCGACCCCAGTAACATGGGAGACTTTGACTA
1 ATATCCAGGTCGTAATGCGCAAAGGTCAGTGTAGTCGACCCCAGTAACATGGGAGACTTTGACTA
* *
67345616 ATAAACTGTACTAATTGGCCCGACCAAAAATTCTAGAAAAC
66 ATAAAATGTACTAATTGGCCCGACAAAAAATTCTAGAAAAC
*
67345657 ATATCCAGGTTGTAATGCGCAAAGGTCAGTGTAGTCGACCCCAGTAACATGGGAGACTTTGACTA
1 ATATCCAGGTCGTAATGCGCAAAGGTCAGTGTAGTCGACCCCAGTAACATGGGAGACTTTGACTA
67345722 ATAAAATGTACTAATTGGCCCGACAAAAAATTCTAGAAAA
66 ATAAAATGTACTAATTGGCCCGACAAAAAATTCTAGAAAA
67345762 AAATATGTAG
Statistics
Matches: 102, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 102 1.00
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (106 bp):
ATATCCAGGTCGTAATGCGCAAAGGTCAGTGTAGTCGACCCCAGTAACATGGGAGACTTTGACTA
ATAAAATGTACTAATTGGCCCGACAAAAAATTCTAGAAAAC
Found at i:67352948 original size:27 final size:27
Alignment explanation
Indices: 67352889--67353040 Score: 214
Period size: 27 Copynumber: 5.6 Consensus size: 27
67352879 TAAATTGTAC
*
67352889 AGCACTAAGTGTGCGAGTTGGACTATGT
1 AGCACTAAGTGTGCGAATT-GACTATGT
67352917 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
67352944 TGCACTAAGTGTGCGAATTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
67352971 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
67352999 AGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
67353026 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67353041 GACTTAATAT
Statistics
Matches: 114, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
27 70 0.61
28 44 0.39
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:67352955 original size:55 final size:55
Alignment explanation
Indices: 67352889--67353040 Score: 225
Period size: 55 Copynumber: 2.8 Consensus size: 55
67352879 TAAATTGTAC
67352889 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTT-GACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
* * * * *
67352944 TGCACTAAGTGTGCGAATTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
* *
67352999 AGCACTAAGTGTGCGAGTTGACTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
67353041 GACTTAATAT
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 23 0.27
55 63 0.73
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
Found at i:67353003 original size:82 final size:82
Alignment explanation
Indices: 67352889--67353040 Score: 250
Period size: 82 Copynumber: 1.9 Consensus size: 82
67352879 TAAATTGTAC
* *
67352889 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATGTTGCACTAAGT
1 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
67352954 GTGCGAATTGATTATGT
66 GTGCGAATTGATTATGT
* * * *
67352971 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
67353036 GTGCG
66 GTGCG
67353041 GACTTAATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 64 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
GTGCGAATTGATTATGT
Found at i:67353817 original size:191 final size:191
Alignment explanation
Indices: 67353493--67353873 Score: 744
Period size: 191 Copynumber: 2.0 Consensus size: 191
67353483 ATAAACTCAC
67353493 TCGGTGTTTCCTTGTCACCTATTCTAGGTTTCTTGGACACATCTCTTTTTGCGTGGTCGGGCCGT
1 TCGGTGTTTCCTTGTCACCTATTCTAGGTTTCTTGGACACATCTCTTTTTGCGTGGTCGGGCCGT
67353558 CATCGAAGTCATCACACCGGATAGCAAGTTTTGGTACTTTCTTCTTAGTCGGCTTAGGAGAACAT
66 CATCGAAGTCATCACACCGGATAGCAAGTTTTGGTACTTTCTTCTTAGTCGGCTTAGGAGAACAT
67353623 TTCGGCATGTATAGGCTATTATGTTGTGTTTGAACTTTGGTATGTAAACTTTTAGCCATGT
131 TTCGGCATGTATAGGCTATTATGTTGTGTTTGAACTTTGGTATGTAAACTTTTAGCCATGT
67353684 TCGGTGTTTCCTTGTCACCTATTCTAGGTTTCTTGGACACATCTCTTTTTGCGTGGTCGGGCCGT
1 TCGGTGTTTCCTTGTCACCTATTCTAGGTTTCTTGGACACATCTCTTTTTGCGTGGTCGGGCCGT
*
67353749 CATCGAAGTCATCACACCGGATAGCAAGTTTTGGTACTTTCTTCTTAGTTGGCTTAGGAGAACAT
66 CATCGAAGTCATCACACCGGATAGCAAGTTTTGGTACTTTCTTCTTAGTCGGCTTAGGAGAACAT
*
67353814 TTCGGCATGTATAGGCTATTATGTTGTGTTTGAACTTTGGTATGTAACCTTTTAGCCATG
131 TTCGGCATGTATAGGCTATTATGTTGTGTTTGAACTTTGGTATGTAAACTTTTAGCCATG
67353874 CGAAAATGGC
Statistics
Matches: 188, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
191 188 1.00
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (191 bp):
TCGGTGTTTCCTTGTCACCTATTCTAGGTTTCTTGGACACATCTCTTTTTGCGTGGTCGGGCCGT
CATCGAAGTCATCACACCGGATAGCAAGTTTTGGTACTTTCTTCTTAGTCGGCTTAGGAGAACAT
TTCGGCATGTATAGGCTATTATGTTGTGTTTGAACTTTGGTATGTAAACTTTTAGCCATGT
Found at i:67358194 original size:13 final size:13
Alignment explanation
Indices: 67358176--67358200 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67358166 GAAGAAATTG
67358176 AAGTCACACGACA
1 AAGTCACACGACA
67358189 AAGTCACACGAC
1 AAGTCACACGAC
67358201 CGTGTGCTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.32, G:0.16, T:0.08
Consensus pattern (13 bp):
AAGTCACACGACA
Found at i:67360006 original size:30 final size:30
Alignment explanation
Indices: 67359952--67360034 Score: 141
Period size: 30 Copynumber: 2.8 Consensus size: 30
67359942 TCAGTCTCAA
*
67359952 CATAT-ACTGGGCCGAAGGCTTTTCATTATT
1 CATATCACTGGGCCGAA-GCCTTTCATTATT
67359982 CATATCACTGGGCCGAAGCCTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTCATTATT
67360012 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
67360035 ATTGTAAACG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 40 0.78
31 11 0.22
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (30 bp):
CATATCACTGGGCCGAAGCCTTTCATTATT
Found at i:67360279 original size:25 final size:25
Alignment explanation
Indices: 67360251--67360321 Score: 124
Period size: 25 Copynumber: 2.8 Consensus size: 25
67360241 CTCTTTTAGT
67360251 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
* *
67360276 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
67360301 AACTGGGGCAAAGCCCTTTTT
1 AACTGGGGCAAAGCCCTTTTT
67360322 CACTTCCTCC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:67360384 original size:10 final size:10
Alignment explanation
Indices: 67360369--67360405 Score: 65
Period size: 10 Copynumber: 3.6 Consensus size: 10
67360359 ATATGAACAC
67360369 ATCATGGCAT
1 ATCATGGCAT
67360379 ATCATGTGCAT
1 ATCATG-GCAT
67360390 ATCATGGCAT
1 ATCATGGCAT
67360400 ATCATG
1 ATCATG
67360406 TACAAAATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 16 0.62
11 10 0.38
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (10 bp):
ATCATGGCAT
Found at i:67363483 original size:39 final size:40
Alignment explanation
Indices: 67363378--67363560 Score: 211
Period size: 40 Copynumber: 4.7 Consensus size: 40
67363368 TTGAATGATG
*
67363378 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAAA
* *
67363416 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAAA
67363456 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAAA
* *
67363495 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTA-AA
*
67363536 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67363561 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 16
0.83 0.07 0.11
Matches are distributed among these distances:
38 18 0.14
39 40 0.32
40 65 0.52
41 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAAA
Found at i:67363512 original size:79 final size:80
Alignment explanation
Indices: 67363378--67363560 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 80
67363368 TTGAATGATG
67363378 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAAATCCGGACTAAGATCCGAAGGCATTT
67363441 GTGCGAGA-TACTA-A
66 GTGCGA-ATTACTATA
* * **
67363455 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AAATCCGGACTAAGAT-CCGAAGGCA
67363517 TTTGTGCGAATTACTATA
63 TTTGTGCGAATTACTATA
* *
67363535 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67363561 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 6, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
77 9 0.10
78 18 0.20
79 50 0.54
80 15 0.16
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAATTACTATA
Found at i:67363582 original size:79 final size:79
Alignment explanation
Indices: 67363407--67363593 Score: 197
Period size: 79 Copynumber: 2.4 Consensus size: 79
67363397 GCTTGTGCTA
** *
67363407 AGTGAC-AAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
1 AGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCC
**
67363470 GAAGGCATTTGTGCG
65 GAAGGCATTTGAACG
* * *
67363485 AGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTC
1 AGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-C
67363548 CCGAAGGCATTTGAACG
63 CCGAAGGCATTTGAACG
* *
67363565 AG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 AGTGA-CTAAATCCGGGTTAAATCCCGAAGG
67363594 TACGTGATTT
Statistics
Matches: 91, Mismatches: 12, Indels: 11
0.80 0.11 0.10
Matches are distributed among these distances:
78 9 0.10
79 57 0.63
80 25 0.27
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (79 bp):
AGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCG
AAGGCATTTGAACG
Found at i:67368220 original size:42 final size:42
Alignment explanation
Indices: 67368161--67368244 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 42
67368151 GCTAATTACT
*
67368161 CCATCCATTCCGAACCATACTC-TAGTTCCTCCAACCTATCGG
1 CCATCCATACCGAACCATAC-CATAGTTCCTCCAACCTATCGG
*
67368203 CCATCCATACCGAACCATACCATAGTTCCTCCGACCTATCGG
1 CCATCCATACCGAACCATACCATAGTTCCTCCAACCTATCGG
67368245 TTCAATCTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
41 1 0.03
42 38 0.97
ACGTcount: A:0.25, C:0.40, G:0.11, T:0.24
Consensus pattern (42 bp):
CCATCCATACCGAACCATACCATAGTTCCTCCAACCTATCGG
Found at i:67368591 original size:27 final size:27
Alignment explanation
Indices: 67368561--67368712 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
67368551 ATATTAAGTC
* * *
67368561 CGCACACTCAGTTCTATATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
67368588 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
67368616 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
67368643 CGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
67368670 CGCACACTTAGTGCTACATAGTCCAACT
1 CGCACACTTAGTGCTACATAGT-CAACT
67368698 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67368713 GTACAATTTA
Statistics
Matches: 114, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
27 69 0.61
28 45 0.39
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:67368646 original size:55 final size:54
Alignment explanation
Indices: 67368561--67368712 Score: 223
Period size: 55 Copynumber: 2.8 Consensus size: 54
67368551 ATATTAAGTC
* * *
67368561 CGCACACTCAGTTCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATC-AACT
* * * *
67368616 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
67368670 CGCACACTTAGTGCTACATAGTCCAACTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGT-CAACTCGCACACTTAGTGCT
67368713 GTACAATTTA
Statistics
Matches: 87, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 25 0.29
55 62 0.71
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:67374650 original size:25 final size:25
Alignment explanation
Indices: 67374622--67374690 Score: 93
Period size: 25 Copynumber: 2.8 Consensus size: 25
67374612 CTCTTTTAAT
* * *
67374622 AACTGGGGCAAAACCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
67374647 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
67374672 AACTCGGGCAAAGCCCTTT
1 AACTAGGGCAAAGCCCTTT
67374691 CTCACTTCCT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:67374750 original size:10 final size:10
Alignment explanation
Indices: 67374737--67374776 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
67374727 CATATATGAA
67374737 CATATCATGG
1 CATATCATGG
67374747 CATATCATGTG
1 CATATCATG-G
*
67374758 CACATCATGG
1 CATATCATGG
67374768 CATATCATG
1 CATATCATG
67374777 TACAAAACAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (10 bp):
CATATCATGG
Found at i:67375577 original size:45 final size:45
Alignment explanation
Indices: 67375508--67375602 Score: 172
Period size: 45 Copynumber: 2.1 Consensus size: 45
67375498 TACTTACTCA
*
67375508 ACTTTACAACCCTACACATGCCATAGACTCGAAACACTAAGATTT
1 ACTTAACAACCCTACACATGCCATAGACTCGAAACACTAAGATTT
*
67375553 ACTTAACAACCCTATACATGCCATAGACTCGAAACACTAAGATTT
1 ACTTAACAACCCTACACATGCCATAGACTCGAAACACTAAGATTT
67375598 ACTTA
1 ACTTA
67375603 CGCCGATAGC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.39, C:0.27, G:0.08, T:0.25
Consensus pattern (45 bp):
ACTTAACAACCCTACACATGCCATAGACTCGAAACACTAAGATTT
Found at i:67382006 original size:57 final size:57
Alignment explanation
Indices: 67381947--67382206 Score: 414
Period size: 57 Copynumber: 4.6 Consensus size: 57
67381937 TCTCATTTCA
* * * *
67381947 CACACTCAGTGCCTCAACAACCGATCTCGCACACACAATGCTCGGTTACGAAAATCA
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGAAACTCG
* *
67382004 CACACACAGTGCCTCAACAACTGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGAAACTCG
* * *
67382061 TACACACAGTGCCTCAACAACTGATCTCGTACACACAGTGCTCGGTTAC-AGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGA-AACTCG
*
67382118 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGAAACTCG
67382175 CACACACAGTGCCTCAACAACCGATCTCGCAC
1 CACACACAGTGCCTCAACAACCGATCTCGCAC
67382207 NNNNNNNNNN
Statistics
Matches: 188, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
57 188 1.00
ACGTcount: A:0.30, C:0.36, G:0.17, T:0.17
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGAAACTCG
Found at i:67382069 original size:28 final size:28
Alignment explanation
Indices: 67381972--67382186 Score: 178
Period size: 28 Copynumber: 7.6 Consensus size: 28
67381962 AACAACCGAT
* *
67381972 CTCGCACACACAATGCTCGGTTACGAAA
1 CTCGCACACACAGTGCTCGGTTACGGAA
* * **** * *
67382000 ATCACACACACAGTGCCTCAACAACTGAT
1 CTCGCACACACAGTG-CTCGGTTACGGAA
67382029 CTCGCACACACAGTGCTCGGTTACGGAA
1 CTCGCACACACAGTGCTCGGTTACGGAA
* **** * *
67382057 CTCGTACACACAGTGCCTCAACAACTGAT
1 CTCGCACACACAGTG-CTCGGTTACGGAA
* *
67382086 CTCGTACACACAGTGCTCGGTTACAGAA
1 CTCGCACACACAGTGCTCGGTTACGGAA
**** * *
67382114 CTCGCACACACAGTGCCTCAACAACCGAT
1 CTCGCACACACAGTG-CTCGGTTACGGAA
67382143 CTCGCACACACAGTGCTCGGTTACGGAA
1 CTCGCACACACAGTGCTCGGTTACGGAA
67382171 CTCGCACACACAGTGC
1 CTCGCACACACAGTGC
67382187 CTCAACAACC
Statistics
Matches: 140, Mismatches: 44, Indels: 6
0.74 0.23 0.03
Matches are distributed among these distances:
28 77 0.55
29 63 0.45
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.18
Consensus pattern (28 bp):
CTCGCACACACAGTGCTCGGTTACGGAA
Found at i:67382791 original size:48 final size:48
Alignment explanation
Indices: 67382735--67382829 Score: 145
Period size: 48 Copynumber: 2.0 Consensus size: 48
67382725 CTCCATGTAA
* ** *
67382735 TCTCACAATCTGAGAGACATACAATTCGGCTAGTTTATCCAATGAAAG
1 TCTCACAATCTGAGAAACATACAATTCAACTAGTCTATCCAATGAAAG
*
67382783 TCTCACAATCTGAGAAACGTACAATTCAACTAGTCTATCCAATGAAA
1 TCTCACAATCTGAGAAACATACAATTCAACTAGTCTATCCAATGAAA
67382830 AATCCATACA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (48 bp):
TCTCACAATCTGAGAAACATACAATTCAACTAGTCTATCCAATGAAAG
Found at i:67383247 original size:42 final size:42
Alignment explanation
Indices: 67383188--67383273 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
67383178 AATTCCTTGG
67383188 AACACACAAACGACTTCTAAACCTCAAACAACCATCATCATC
1 AACACACAAACGACTTCTAAACCTCAAACAACCATCATCATC
* *
67383230 AACACACAAACGACTTCTGAACCTCAAACAATCATCATCATC
1 AACACACAAACGACTTCTAAACCTCAAACAACCATCATCATC
67383272 AA
1 AA
67383274 TTTGAAACTC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.45, C:0.34, G:0.03, T:0.17
Consensus pattern (42 bp):
AACACACAAACGACTTCTAAACCTCAAACAACCATCATCATC
Found at i:67387704 original size:200 final size:200
Alignment explanation
Indices: 67387432--67387833 Score: 786
Period size: 200 Copynumber: 2.0 Consensus size: 200
67387422 CTTTTTCACA
67387432 TTATCAACTCAAATCACATACATTATTTACTATAACATCTTTACATTCGGCATTGGTGTCAACCA
1 TTATCAACTCAAATCACATACATTATTTACTATAACATCTTTACATTCGGCATTGGTGTCAACCA
67387497 TAGTAGCCGATTCTTCCTACTTTGTACCCATGCATCTATTAATCCTTAGTTGGTTCAAACACTTC
66 TAGTAGCCGATTCTTCCTACTTTGTACCCATGCATCTATTAATCCTTAGTTGGTTCAAACACTTC
67387562 ACACACTAGGATTCATCAAATTTTTAACAAGAAATAAAATCTCTAATCCTCAAACTACCATGGCC
131 ACACACTAGGATTCATCAAATTTTTAACAAGAAATAAAATCTCTAATCCTCAAACTACCATGGCC
67387627 GAACC
196 GAACC
67387632 TTATCAACTCAAATCACATACATTATTTACTATAACATCTTTACATTCGGCATTGGTGTCAACCA
1 TTATCAACTCAAATCACATACATTATTTACTATAACATCTTTACATTCGGCATTGGTGTCAACCA
*
67387697 TAGTAGCCGATTCTTCCTACTTTGTACCCATGCATCTATTAATCCTTAGTTGGTTCAAGCACTTC
66 TAGTAGCCGATTCTTCCTACTTTGTACCCATGCATCTATTAATCCTTAGTTGGTTCAAACACTTC
*
67387762 ACACACTAGGATTCATCAAATTTTTAACAAGAAATAAAATCTCTAATCCTCAAACTATCATGGCC
131 ACACACTAGGATTCATCAAATTTTTAACAAGAAATAAAATCTCTAATCCTCAAACTACCATGGCC
67387827 GAACC
196 GAACC
67387832 TT
1 TT
67387834 CATGGAGTTG
Statistics
Matches: 200, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
200 200 1.00
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.33
Consensus pattern (200 bp):
TTATCAACTCAAATCACATACATTATTTACTATAACATCTTTACATTCGGCATTGGTGTCAACCA
TAGTAGCCGATTCTTCCTACTTTGTACCCATGCATCTATTAATCCTTAGTTGGTTCAAACACTTC
ACACACTAGGATTCATCAAATTTTTAACAAGAAATAAAATCTCTAATCCTCAAACTACCATGGCC
GAACC
Found at i:67394889 original size:28 final size:28
Alignment explanation
Indices: 67394796--67394896 Score: 152
Period size: 27 Copynumber: 3.7 Consensus size: 28
67394786 ATATTGAGTC
* *
67394796 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
67394823 CGCACACTTAGTGCTACGTAATCAAA-T
1 CGCACACTTAGTGCTACATAATCAAACT
*
67394850 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
67394878 CGCACACTTAGTGCTACAT
1 CGCACACTTAGTGCTACAT
67394897 GGATTTGAAG
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
27 45 0.67
28 22 0.33
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:67403082 original size:35 final size:35
Alignment explanation
Indices: 67403043--67403113 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
67403033 GAATAATATG
67403043 AGTATTGGAATATGAGTAATGTTATGCATAGGTAA
1 AGTATTGGAATATGAGTAATGTTATGCATAGGTAA
67403078 AGTATTGGAATATGAGTAATGTTATGCATAGGTAA
1 AGTATTGGAATATGAGTAATGTTATGCATAGGTAA
67403113 A
1 A
67403114 ATTTTTATGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.38, C:0.03, G:0.25, T:0.34
Consensus pattern (35 bp):
AGTATTGGAATATGAGTAATGTTATGCATAGGTAA
Found at i:67403896 original size:110 final size:109
Alignment explanation
Indices: 67403701--67403919 Score: 402
Period size: 110 Copynumber: 2.0 Consensus size: 109
67403691 TGTGACTATT
67403701 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTAAATTTAAAGCTCAAGAGCAAA
1 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTAAATTTAAAGCTCAAGAGCAAA
* *
67403766 GAGGAACTAAATCAGATAGGGGAAAGGAGAAAGTAATCGAGTAG
66 GAGGAACTAAATCAAATAGGGGAAAGGAGAAAGCAATCGAGTAG
*
67403810 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAGCTCAAGGGCAA
1 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTG-TTAAATTTAAAGCTCAAGAGCAA
67403875 AGAGGAACTAAATCAAATAGGGGAAAGGAGAAAGCAATCGAGTAG
65 AGAGGAACTAAATCAAATAGGGGAAAGGAGAAAGCAATCGAGTAG
67403920 CCTATCCACA
Statistics
Matches: 106, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
109 41 0.39
110 65 0.61
ACGTcount: A:0.47, C:0.08, G:0.22, T:0.24
Consensus pattern (109 bp):
ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTAAATTTAAAGCTCAAGAGCAAA
GAGGAACTAAATCAAATAGGGGAAAGGAGAAAGCAATCGAGTAG
Found at i:67404306 original size:39 final size:39
Alignment explanation
Indices: 67404252--67404498 Score: 327
Period size: 39 Copynumber: 6.3 Consensus size: 39
67404242 TAATGGAGAA
* *
67404252 TTATACCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
67404291 TTATATCCGGGCTAAGTCCCAAAGGCATTTGCGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
67404330 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
67404369 TTATATCCGGGTTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * * *
67404408 TTTTATCTGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
* * *
67404447 TTATATCCGGGCTAAAGTCCCGCAGGCTTTC-TGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
67404486 TTATATCCGGGCT
1 TTATATCCGGGCT
67404499 TAAAGTCTTG
Statistics
Matches: 186, Mismatches: 20, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
39 173 0.93
40 13 0.07
ACGTcount: A:0.18, C:0.23, G:0.29, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:67412303 original size:43 final size:43
Alignment explanation
Indices: 67412242--67412326 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
67412232 TCAAGAACGA
67412242 GTAAAAAATCGAGGAAGAGAAACTTGTAAAATAGTCCCTGTAT
1 GTAAAAAATCGAGGAAGAGAAACTTGTAAAATAGTCCCTGTAT
67412285 GTAAAAAATCGAGGAAGAGAAACTTGTAAAATAGTCCCTGTA
1 GTAAAAAATCGAGGAAGAGAAACTTGTAAAATAGTCCCTGTA
67412327 CTTTTTAGAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.45, C:0.12, G:0.21, T:0.22
Consensus pattern (43 bp):
GTAAAAAATCGAGGAAGAGAAACTTGTAAAATAGTCCCTGTAT
Found at i:67415038 original size:27 final size:28
Alignment explanation
Indices: 67415008--67415067 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
67414998 GTGATAGAGT
*
67415008 CACCAGATACAGATA-TTATGGCAAAGC
1 CACCAGAAACAGATATTTATGGCAAAGC
* *
67415035 CACCAGAAACAGATATTTTTGGCAGAGC
1 CACCAGAAACAGATATTTATGGCAAAGC
67415063 CACCA
1 CACCA
67415068 TATCAAATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 14 0.48
28 15 0.52
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.18
Consensus pattern (28 bp):
CACCAGAAACAGATATTTATGGCAAAGC
Found at i:67415066 original size:28 final size:28
Alignment explanation
Indices: 67415003--67415097 Score: 95
Period size: 27 Copynumber: 3.5 Consensus size: 28
67414993 ATATTGTGAT
* *
67415003 AGAGTCACCAGATACAGATA-TTATGGC
1 AGAGCCACCAGAAACAGATATTTATGGC
* *
67415030 AAAGCCACCAGAAACAGATATTTTTGGC
1 AGAGCCACCAGAAACAGATATTTATGGC
* * * * *
67415058 AGAGCCACCA-TATCAAATATTTGTGAC
1 AGAGCCACCAGAAACAGATATTTATGGC
67415085 AGAGCCACCAGAA
1 AGAGCCACCAGAA
67415098 CACTCCCTCC
Statistics
Matches: 55, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
27 39 0.71
28 16 0.29
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (28 bp):
AGAGCCACCAGAAACAGATATTTATGGC
Found at i:67415533 original size:8 final size:8
Alignment explanation
Indices: 67415506--67415544 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
67415496 ACAAAATGTT
67415506 GGCTTTTC
1 GGCTTTTC
67415514 GG-TATTTC
1 GGCT-TTTC
*
67415522 GGCTTTTT
1 GGCTTTTC
67415530 GGCTTTTC
1 GGCTTTTC
67415538 GGCTTTT
1 GGCTTTT
67415545 GCCGATCTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 1 0.04
8 25 0.93
9 1 0.04
ACGTcount: A:0.03, C:0.18, G:0.26, T:0.54
Consensus pattern (8 bp):
GGCTTTTC
Found at i:67418837 original size:27 final size:28
Alignment explanation
Indices: 67418807--67418900 Score: 129
Period size: 27 Copynumber: 3.4 Consensus size: 28
67418797 ATATTGTGAA
* *
67418807 AGAGTCACCAGATACAGATA-TTATGGC
1 AGAGCCACCAGATACAGATATTTGTGGC
* * *
67418834 AGAGTCACTAGAAACAGATATTTGTGGC
1 AGAGCCACCAGATACAGATATTTGTGGC
67418862 AGAGCCACCAGAT-CAGATATTTGTGGC
1 AGAGCCACCAGATACAGATATTTGTGGC
67418889 AGAGCCACCAGA
1 AGAGCCACCAGA
67418901 ACGCTTCCTC
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 44 0.73
28 16 0.27
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.20
Consensus pattern (28 bp):
AGAGCCACCAGATACAGATATTTGTGGC
Found at i:67424184 original size:35 final size:35
Alignment explanation
Indices: 67424119--67424298 Score: 182
Period size: 35 Copynumber: 5.1 Consensus size: 35
67424109 TACTTACTTG
* *
67424119 TATGGCCGAATACT-CAATGTTCATTATATCATCACA
1 TATGGCCAAATA-TACAA-GTTCAATATATCATCACA
* * *
67424155 TATGGCCAAAAATACAAGTACAATATATCATCATA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* * * * *
67424190 TATGACCGAATATACAAGCTCAATATAACATCAAA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* * * * * *
67424225 TGTAGTCAAATATTCAAGTTTAATATAACATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
*
67424260 TGTGGCCAAATATACAAGTTCAATATATCATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
67424295 TATG
1 TATG
67424299 TACATACCAA
Statistics
Matches: 116, Mismatches: 27, Indels: 3
0.79 0.18 0.02
Matches are distributed among these distances:
35 103 0.89
36 13 0.11
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.29
Consensus pattern (35 bp):
TATGGCCAAATATACAAGTTCAATATATCATCACA
Found at i:67426027 original size:74 final size:74
Alignment explanation
Indices: 67425906--67426052 Score: 240
Period size: 74 Copynumber: 2.0 Consensus size: 74
67425896 TCCGTGTTTA
*
67425906 TGCCACAGTACTTTAACCAATGAAATTTTCTTATTTCGTAACTCTTTAATCTCATGAGCCAGAAT
1 TGCCACAGTACTTTAACCAATGAAATTTTCTTATTTCGTAACTCTTTAATCTCATGAGCAAGAAT
67425971 ACAAATCGG
66 ACAAATCGG
* * * *
67425980 TGCCACAGTGCTTTAACCAATGGAATTTTCTTATTTCGTAACTCTTTAATCTCATTAGCAAGAGT
1 TGCCACAGTACTTTAACCAATGAAATTTTCTTATTTCGTAACTCTTTAATCTCATGAGCAAGAAT
*
67426045 ACGAATCG
66 ACAAATCG
67426053 ATTTTTCCTC
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 67 1.00
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.35
Consensus pattern (74 bp):
TGCCACAGTACTTTAACCAATGAAATTTTCTTATTTCGTAACTCTTTAATCTCATGAGCAAGAAT
ACAAATCGG
Found at i:67428820 original size:15 final size:15
Alignment explanation
Indices: 67428800--67428829 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
67428790 AAGCAAAGTA
67428800 AGCTTCATAACCATT
1 AGCTTCATAACCATT
67428815 AGCTTCATAACCATT
1 AGCTTCATAACCATT
67428830 TCTCGCATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.33
Consensus pattern (15 bp):
AGCTTCATAACCATT
Found at i:67431289 original size:28 final size:28
Alignment explanation
Indices: 67431249--67431401 Score: 247
Period size: 28 Copynumber: 5.5 Consensus size: 28
67431239 TAAATTGTGC
67431249 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67431277 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
67431305 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
67431332 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
67431360 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
67431387 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67431402 GACTTAATAT
Statistics
Matches: 119, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
27 49 0.41
28 70 0.59
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:67431340 original size:55 final size:55
Alignment explanation
Indices: 67431249--67431401 Score: 252
Period size: 55 Copynumber: 2.8 Consensus size: 55
67431239 TAAATTGTGC
*
67431249 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTATGACTATGT
*
67431305 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
67431360 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
67431402 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
55 75 0.82
56 17 0.18
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:67444601 original size:35 final size:35
Alignment explanation
Indices: 67444545--67444706 Score: 198
Period size: 35 Copynumber: 4.6 Consensus size: 35
67444535 AATACTCAAG
*
67444545 GTTCATTATATCATCACATATGGCCAAATATACAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
* * * **
67444580 GTACAATATATCATCATATATGACTGAATATACAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
* * * * *
67444615 GTTCAATATAACATCACATGTAGTCAAATATTCAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
* * *
67444650 GTTTAATATAACATCACATGTGGCCAAATATACAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
67444685 GTTCAATATATCATCACATATG
1 GTTCAATATATCATCACATATG
67444707 TACATAACTA
Statistics
Matches: 104, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 104 1.00
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.31
Consensus pattern (35 bp):
GTTCAATATATCATCACATATGGCCAAATATACAA
Found at i:67447167 original size:18 final size:18
Alignment explanation
Indices: 67447130--67447167 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
67447120 TAAATGATGA
67447130 ATTTAAAGTATTAGTTGTT
1 ATTTAAAGTATTA-TTGTT
67447149 ATTTATAAGTATT-TTGTT
1 ATTTA-AAGTATTATTGTT
67447167 A
1 A
67447168 AGTGATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 5 0.28
20 7 0.39
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (18 bp):
ATTTAAAGTATTATTGTT
Found at i:67448821 original size:15 final size:15
Alignment explanation
Indices: 67448801--67448831 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
67448791 AATTATGAAA
67448801 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
67448816 GATATGTTTTGTATT
1 GATATGTTTTGGATT
67448831 G
1 G
67448832 TAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:67452840 original size:27 final size:28
Alignment explanation
Indices: 67452803--67452915 Score: 135
Period size: 27 Copynumber: 4.2 Consensus size: 28
67452793 AGCATGGCTG
* *
67452803 CCAGA-ACAGATA-TTGTGATAGAGTCA
1 CCAGATACAGATATTTGTGACAGAGCCA
*
67452829 CCAGATACAGATA-TTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGACAGAGCCA
* * * *
67452856 CCAGAAACATATATTTTTGGCAGAGCCA
1 CCAGATACAGATATTTGTGACAGAGCCA
67452884 CCAGAT-CAGATATTTGTGACAGAGCCA
1 CCAGATACAGATATTTGTGACAGAGCCA
67452911 CCAGA
1 CCAGA
67452916 ACACTCCCTC
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 52 0.69
28 18 0.24
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.21
Consensus pattern (28 bp):
CCAGATACAGATATTTGTGACAGAGCCA
Found at i:67453342 original size:8 final size:8
Alignment explanation
Indices: 67453325--67453363 Score: 69
Period size: 8 Copynumber: 4.9 Consensus size: 8
67453315 ACAAAATGTT
67453325 GGCTTTTC
1 GGCTTTTC
*
67453333 GGCATTTC
1 GGCTTTTC
67453341 GGCTTTTC
1 GGCTTTTC
67453349 GGCTTTTC
1 GGCTTTTC
67453357 GGCTTTT
1 GGCTTTT
67453364 GCCGATCTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.03, C:0.23, G:0.26, T:0.49
Consensus pattern (8 bp):
GGCTTTTC
Found at i:67461983 original size:35 final size:35
Alignment explanation
Indices: 67461918--67462097 Score: 182
Period size: 35 Copynumber: 5.1 Consensus size: 35
67461908 TACTTACTTG
* *
67461918 TATGGCCGAATACT-CAATGTTCATTATATCATCACA
1 TATGGCCAAATA-TACAA-GTTCAATATATCATCACA
* * *
67461954 TATGGCCAAAAATACAAGTACAATATATCATCATA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* * * * *
67461989 TATGACCGAATATACAAGCTCAATATAACATCAAA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* * * * * *
67462024 TGTAGTCAAATATTCAAGTTTAATATAACATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
*
67462059 TGTGGCCAAATATACAAGTTCAATATATCATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
67462094 TATG
1 TATG
67462098 TACATACCAA
Statistics
Matches: 116, Mismatches: 27, Indels: 3
0.79 0.18 0.02
Matches are distributed among these distances:
35 103 0.89
36 13 0.11
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.29
Consensus pattern (35 bp):
TATGGCCAAATATACAAGTTCAATATATCATCACA
Found at i:67469225 original size:35 final size:35
Alignment explanation
Indices: 67469180--67469341 Score: 198
Period size: 35 Copynumber: 4.6 Consensus size: 35
67469170 AATACTCAAG
*
67469180 GTTCATTATATCATCACATATGGCCAAATATACAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
* * * **
67469215 GTACAATATATCATCATATATGACTGAATATACAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
* * * * *
67469250 GTTCAATATAACATCACATGTAGTCAAATATTCAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
* * *
67469285 GTTTAATATAACATCACATGTGGCCAAATATACAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
67469320 GTTCAATATATCATCACATATG
1 GTTCAATATATCATCACATATG
67469342 TACATAACTA
Statistics
Matches: 104, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 104 1.00
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.31
Consensus pattern (35 bp):
GTTCAATATATCATCACATATGGCCAAATATACAA
Found at i:67471802 original size:18 final size:18
Alignment explanation
Indices: 67471765--67471802 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
67471755 TAAATGATGA
67471765 ATTTAAAGTATTAGTTGTT
1 ATTTAAAGTATTA-TTGTT
67471784 ATTTATAAGTATT-TTGTT
1 ATTTA-AAGTATTATTGTT
67471802 A
1 A
67471803 AGTGATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 5 0.28
20 7 0.39
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (18 bp):
ATTTAAAGTATTATTGTT
Found at i:67473453 original size:15 final size:15
Alignment explanation
Indices: 67473433--67473463 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
67473423 AATTATGAAA
67473433 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
67473448 GATATGTTTTGTATT
1 GATATGTTTTGGATT
67473463 G
1 G
67473464 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:67475845 original size:27 final size:27
Alignment explanation
Indices: 67475822--67475956 Score: 171
Period size: 27 Copynumber: 5.0 Consensus size: 27
67475812 AAAAATTATT
*
67475822 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
67475849 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
67475876 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * *
67475903 GAAATACCCCTATAGGGTAGAATTATC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * * *
67475930 GAGATACCCTTATGGGGTAAAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
67475957 ATTTTGCCCT
Statistics
Matches: 93, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:67475873 original size:54 final size:54
Alignment explanation
Indices: 67475815--67475957 Score: 196
Period size: 54 Copynumber: 2.6 Consensus size: 54
67475805 CGATTTAAAA
* * *
67475815 AATTATTGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
* * *
67475869 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
* * * *
67475923 AATTATCGAGATACCCTTATGGGGTAAAATTACCA
1 AATTATCGAAATACCCTTGTAGGGTAGAATTACCA
67475958 TTTTGCCCTT
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 76 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (54 bp):
AATTATCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
Found at i:67475966 original size:27 final size:28
Alignment explanation
Indices: 67475936--67475999 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 28
67475926 TATCGAGATA
*
67475936 CCCTTATGGG-GTAAAATTACCATTTTG
1 CCCTTATGGGTGTAAAATGACCATTTTG
* **
67475963 CCCTTA-GGGTGTTAAATGACTGTTTTG
1 CCCTTATGGGTGTAAAATGACCATTTTG
*
67475990 CCCTTGTGGG
1 CCCTTATGGG
67476000 CAAGTGATTG
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 3 0.10
27 24 0.80
28 3 0.10
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.38
Consensus pattern (28 bp):
CCCTTATGGGTGTAAAATGACCATTTTG
Found at i:67477386 original size:27 final size:26
Alignment explanation
Indices: 67477330--67477386 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
67477320 CAACCTTAAC
* * *
67477330 CCTAGGGGTATATTAGTAATTTTGCT
1 CCTAGGGGTAAATTAGTAATTTTCCA
67477356 CCTAGGGGTAAATCT-GTAAATTTTCCA
1 CCTAGGGGTAAAT-TAGT-AATTTTCCA
67477383 CCTA
1 CCTA
67477387 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATTAGTAATTTTCCA
Found at i:67482345 original size:20 final size:21
Alignment explanation
Indices: 67482316--67482368 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
67482306 GGGGGAAAAG
* *
67482316 AAGAAGAGAAAAT-AGATGAA
1 AAGAAAAGAAAATGAAATGAA
*
67482336 GAGAAAAG-AAATGAAATGAA
1 AAGAAAAGAAAATGAAATGAA
67482356 AAGAAGAAGAAAA
1 AAGAA-AAGAAAA
67482369 AAACCTGAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 4 0.15
20 16 0.62
21 3 0.12
22 3 0.12
ACGTcount: A:0.68, C:0.00, G:0.25, T:0.08
Consensus pattern (21 bp):
AAGAAAAGAAAATGAAATGAA
Found at i:67482349 original size:15 final size:15
Alignment explanation
Indices: 67482310--67482360 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
67482300 GGCTATGGGG
67482310 GAAAAG-AA-GAAGA
1 GAAAAGAAATGAAGA
* *
67482323 GAAAATAGATGAAGA
1 GAAAAGAAATGAAGA
67482338 GAAAAGAAATGAA-A
1 GAAAAGAAATGAAGA
67482352 TGAAAAGAA
1 -GAAAAGAA
67482361 GAAGAAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
13 5 0.16
14 2 0.06
15 24 0.77
ACGTcount: A:0.67, C:0.00, G:0.25, T:0.08
Consensus pattern (15 bp):
GAAAAGAAATGAAGA
Found at i:67482682 original size:84 final size:80
Alignment explanation
Indices: 67482540--67482735 Score: 266
Period size: 84 Copynumber: 2.4 Consensus size: 80
67482530 GAGAATTGAG
*
67482540 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGATAGCGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGATAGCGATATATCCGGGCTAA-ACCC-
67482605 AAGAGAGAGCATTCGTGCT
64 -AGA-AGAGCATTCGTGCT
* * * * *
67482624 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGATAGCGATATATCCGGGCTAAACCCAG
67482689 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * * *
67482704 GGTGTTATATCCGGGCTAGGTCTCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
67482736 ATCATGCTGG
Statistics
Matches: 101, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
80 41 0.41
81 2 0.02
83 3 0.03
84 55 0.54
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.24
Consensus pattern (80 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGATAGCGATATATCCGGGCTAAACCCAG
AAGAGCATTCGTGCT
Done.