Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 202 of 297
Found at i:68536123 original size:29 final size:29
Alignment explanation
Indices: 68536090--68536147 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
68536080 AAAATATCCA
68536090 AAGAGATGGTCTCAACTTAAATCCTTCCT
1 AAGAGATGGTCTCAACTTAAATCCTTCCT
68536119 AAGAGATGGTCTCAACTTAAATCCTTCCT
1 AAGAGATGGTCTCAACTTAAATCCTTCCT
68536148 CCTCAGATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (29 bp):
AAGAGATGGTCTCAACTTAAATCCTTCCT
Found at i:68545291 original size:47 final size:45
Alignment explanation
Indices: 68545220--68545485 Score: 211
Period size: 47 Copynumber: 5.7 Consensus size: 45
68545210 TGATTTGTGC
68545220 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATA-TATGATA
* *
68545266 GCCAGTGTAAGACCATGTCTGGGACATGGCATTAG-CATAGA-GATAA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCATATATGAT-A
* * *
68545312 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGACAGAGATA
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ATA-TGATA
* * * * * *
68545361 GCCAGTGTAAGACGTGTCTAGGACACGCATCGGCTA-AGAGTTG-T-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATATA--TGATA
* * *
68545405 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAG--C-CATATATGATA
*
68545453 GCCAATGTAAGACCATGTCTGGGACATGGCATC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
68545486 GACAATATAT
Statistics
Matches: 177, Mismatches: 23, Indels: 36
0.75 0.10 0.15
Matches are distributed among these distances:
44 28 0.16
45 6 0.03
46 24 0.14
47 64 0.36
48 32 0.18
49 15 0.08
50 8 0.05
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATATATGATA
Found at i:68545385 original size:94 final size:91
Alignment explanation
Indices: 68545220--68545478 Score: 267
Period size: 94 Copynumber: 2.8 Consensus size: 91
68545210 TGATTTGTGC
*
68545220 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTAAGATAGCCAGTGTAAGACCATGTC
* * *
68545285 TGGGACATGGCATTAGC-ATAGAGATAAGT
66 TAGGACA-CGCATCAGCTA-AGAG-T-AGT
* *
68545314 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGAC-AGAGATAGCCAGTGTAAGA-CGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ACTA-AGATAGCCAGTGTAAGACCAT
* *
68545376 GTCTAGGACACGCATCGGCTAAGAGTTGT
63 GTCTAGGACACGCATCAGCTAAGAGTAGT
* * * * *
68545405 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTA-TATGAGAGCCAATGTAAGACCAT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTAAGATAGCCAGTGTAAGACCAT
*
68545469 GTCTGGGACA
63 GTCTAGGACA
68545479 TGGCATCGAC
Statistics
Matches: 140, Mismatches: 15, Indels: 21
0.80 0.09 0.12
Matches are distributed among these distances:
91 33 0.24
92 15 0.11
93 25 0.18
94 48 0.34
95 19 0.14
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (91 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTAAGATAGCCAGTGTAAGACCATGTC
TAGGACACGCATCAGCTAAGAGTAGT
Found at i:68551406 original size:31 final size:31
Alignment explanation
Indices: 68551368--68551431 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
68551358 CTTTTTCATA
68551368 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
68551399 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
68551430 TT
1 TT
68551432 ACTGTAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:68551689 original size:24 final size:24
Alignment explanation
Indices: 68551625--68551766 Score: 220
Period size: 24 Copynumber: 6.0 Consensus size: 24
68551615 TCTTTATCAT
*
68551625 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
68551650 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
68551673 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
68551697 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
68551720 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
68551744 ATAAC-GGGGACATAAGCCCTTTT
1 ATAACTGGGG-CATAAGCCCTTTT
68551767 TACACTTCCT
Statistics
Matches: 112, Mismatches: 1, Indels: 9
0.92 0.01 0.07
Matches are distributed among these distances:
23 45 0.40
24 59 0.53
25 8 0.07
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:68551698 original size:47 final size:48
Alignment explanation
Indices: 68551625--68551766 Score: 220
Period size: 47 Copynumber: 3.0 Consensus size: 48
68551615 TCTTTATCAT
*
68551625 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
68551673 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
68551720 ATAACTGGGGCATAAGCCCTTTTAATAAC-GGGGACATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGG-CATAAGCCCTTTT
68551767 TACACTTCCT
Statistics
Matches: 89, Mismatches: 1, Indels: 8
0.91 0.01 0.08
Matches are distributed among these distances:
46 4 0.04
47 64 0.72
48 21 0.24
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:68551842 original size:20 final size:20
Alignment explanation
Indices: 68551817--68551863 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
68551807 TTATGAACAC
68551817 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
68551837 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
68551857 ACCATGT
1 ATCATGT
68551864 TTATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:68553889 original size:39 final size:40
Alignment explanation
Indices: 68553833--68554042 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
68553823 ACCCAATTAT
* * ** *
68553833 CTTCGGGATTTA-TCCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTCGCACAAATGC
* * * *
68553871 CGTCGGGTCTTAGCCCGGATATGGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTCGCACAAATGC
* *
68553911 CTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTCGCACAAATGC
* *
68553951 CTTCGGGACTTAGCCCGGA-ATTAGTAACTCGTACAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTCACTCGCACAAATGC
* * *
68553991 CTTCGGGACTTAGCCCGGA-ATTAATCACTAGCACAAATGT
1 CTTCGGGACTTAGCCCGGATA-TAGTCACTCGCACAAATGC
68554031 CTTCGGGACTTA
1 CTTCGGGACTTA
68554043 ACCCCGTTAG
Statistics
Matches: 147, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
38 9 0.06
39 17 0.12
40 121 0.82
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTCGCACAAATGC
Found at i:68555268 original size:21 final size:20
Alignment explanation
Indices: 68555241--68555283 Score: 77
Period size: 21 Copynumber: 2.1 Consensus size: 20
68555231 CATAGCCGAT
68555241 TTTTCTCCAAGCTCTTTCCC
1 TTTTCTCCAAGCTCTTTCCC
68555261 TNTTTCTCCAAGCTCTTTCCC
1 T-TTTCTCCAAGCTCTTTCCC
68555282 TT
1 TT
68555284 CTTTTTCTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.09, C:0.37, G:0.05, T:0.47
Consensus pattern (20 bp):
TTTTCTCCAAGCTCTTTCCC
Found at i:68560604 original size:28 final size:28
Alignment explanation
Indices: 68560541--68560691 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
68560531 ATATTAAGTC
*
68560541 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
68560568 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
68560596 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
*
68560624 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
68560652 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
68560681 CGCACACTTAG
1 CGCACACTTAG
68560692 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.19
28 75 0.66
29 16 0.14
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68583636 original size:17 final size:17
Alignment explanation
Indices: 68583614--68583647 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
68583604 AATCACAAAC
68583614 TCCATAGGTTCAACAGA
1 TCCATAGGTTCAACAGA
*
68583631 TCCATAGGTTCTACAGA
1 TCCATAGGTTCAACAGA
68583648 CATATTCATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (17 bp):
TCCATAGGTTCAACAGA
Found at i:68585724 original size:162 final size:162
Alignment explanation
Indices: 68585456--68585777 Score: 581
Period size: 162 Copynumber: 2.0 Consensus size: 162
68585446 GTTTAAGCCT
* * *
68585456 CACACGCCCGTGTGCTTTGGACATGCTCGTGTCCTTTACTCGTGTTGAATTATTGGACTTTATTT
1 CACACGCCCATGTGCTTTGGACATGCCCGTGTCCTTTACCCGTGTTGAATTATTGGACTTTATTT
* *
68585521 TTCATTTTGAACCTACAGGGGTATTCACATGGCCAAGCACACGCCCGTCTCCCTGGAGCGTGCCC
66 TTCATTTTGAACCTACAGAGGTATTCACATGGCCAAGCACACGCCCGTCTCCCTGGAGCCTGCCC
68585586 CCCCACTCGGCCATGTCACGCCCGTGTTATTG
131 CCCCACTCGGCCATGTCACGCCCGTGTTATTG
*
68585618 CACACGCCCATGTGCTTTGGACATTCCCGTGTCCTTTACCCGTGTTGAATTATTGGACTTTATTT
1 CACACGCCCATGTGCTTTGGACATGCCCGTGTCCTTTACCCGTGTTGAATTATTGGACTTTATTT
*
68585683 TTCATTTTGAACCTACAGAGGTATTCACATGGCCGAGCACACGCCCGTCTCCCTGGAGCCTGCCC
66 TTCATTTTGAACCTACAGAGGTATTCACATGGCCAAGCACACGCCCGTCTCCCTGGAGCCTGCCC
68585748 CCCCACTCGGCCATGTCACGCCCGTGTTAT
131 CCCCACTCGGCCATGTCACGCCCGTGTTAT
68585778 GGCTTGTGTG
Statistics
Matches: 153, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
162 153 1.00
ACGTcount: A:0.17, C:0.32, G:0.21, T:0.30
Consensus pattern (162 bp):
CACACGCCCATGTGCTTTGGACATGCCCGTGTCCTTTACCCGTGTTGAATTATTGGACTTTATTT
TTCATTTTGAACCTACAGAGGTATTCACATGGCCAAGCACACGCCCGTCTCCCTGGAGCCTGCCC
CCCCACTCGGCCATGTCACGCCCGTGTTATTG
Found at i:68586634 original size:45 final size:44
Alignment explanation
Indices: 68586563--68586650 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 44
68586553 ACAAGTTGAT
*
68586563 AGTGTAGACAATTCTCCAACCATCTTCCGATCTTCACGAGTCCNC
1 AGTGTAGACAATACTCCAACCATCTTCCGATCTTCACGAGTCC-C
*
68586608 AGTGTAGACAATACTCC-ACCTGTCTTCCGATCTTCACGAGTCC
1 AGTGTAGACAATACTCCAACC-ATCTTCCGATCTTCACGAGTCC
68586651 TCGAGGTCTA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
44 3 0.08
45 37 0.93
ACGTcount: A:0.24, C:0.33, G:0.15, T:0.27
Consensus pattern (44 bp):
AGTGTAGACAATACTCCAACCATCTTCCGATCTTCACGAGTCCC
Found at i:68588657 original size:47 final size:48
Alignment explanation
Indices: 68588588--68588679 Score: 159
Period size: 47 Copynumber: 1.9 Consensus size: 48
68588578 TAGATAAAGG
*
68588588 ATCTTATCTGTATTATCACATC-ATATATAGGAAACACATTGTGGCTC
1 ATCTTATCTGTATTATCACATCAATATATAAGAAACACATTGTGGCTC
68588635 ATCTTATCTGTATTATCACATCATATATATAAGAAACACATTGTG
1 ATCTTATCTGTATTATCACATCA-ATATATAAGAAACACATTGTG
68588680 AATTTTCTCA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
47 22 0.52
49 20 0.48
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (48 bp):
ATCTTATCTGTATTATCACATCAATATATAAGAAACACATTGTGGCTC
Found at i:68596609 original size:49 final size:49
Alignment explanation
Indices: 68596537--68596774 Score: 278
Period size: 49 Copynumber: 4.8 Consensus size: 49
68596527 TGAGGTCACG
* * *
68596537 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCGCA
* * * * * *
68596586 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCAATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GATCGCA
* * ** * *
68596637 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATGGTTAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GATCGCA
* *
68596687 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATAGATCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCGCA
* *
68596736 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
68596775 GTTTTGGCTA
Statistics
Matches: 157, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
49 77 0.49
50 44 0.28
51 36 0.23
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCGCA
Found at i:68596726 original size:101 final size:98
Alignment explanation
Indices: 68596532--68596761 Score: 302
Period size: 100 Copynumber: 2.3 Consensus size: 98
68596522 TATTGTGAGG
**
68596532 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATTGGTTGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATTGGTCACATGTGTAGTACT
** *
68596597 AAGTGCAGGCTACTATGCGTACCCGATAACTTCA-A
66 AAGTGCAGGCTACTACACGTACCAGATAA--T-AGA
* **
68596632 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCGGATGGTTAGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATAATT-GGTCACATGTGTAGTA
*
68596696 CTAAGTGCAGGCTACTACATGTACCAGATAATAGA
64 CTAAGTGCAGGCTACTACACGTACCAGATAATAGA
* *
68596731 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
68596762 TGCGTACCAG
Statistics
Matches: 116, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
98 1 0.01
99 32 0.28
100 42 0.36
101 41 0.35
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACACGTACCAGATAATAGA
Found at i:68606827 original size:49 final size:50
Alignment explanation
Indices: 68606749--68606981 Score: 276
Period size: 49 Copynumber: 4.7 Consensus size: 50
68606739 ATCTATTCTG
*
68606749 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGAATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATT
* * *
68606799 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-ATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGAATAA-TT
* * * * * **
68606849 CGATCACGTGTGTTGTACTAAGTGCAGGCTACTACGTGTATC-AGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGA-ATAATT
* *
68606899 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGAATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATT
* *
68606949 -GGTTACATGTGTAGTACTAAGTGCAAGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
68606982 TGCGTACCAG
Statistics
Matches: 154, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
49 69 0.45
50 49 0.32
51 36 0.23
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATT
Found at i:68607024 original size:150 final size:149
Alignment explanation
Indices: 68606749--68607027 Score: 398
Period size: 150 Copynumber: 1.9 Consensus size: 149
68606739 ATCTATTCTG
*
68606749 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGAATAATTGGTCGCATGTGTAGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGAATAATTGGTCACATGTGTAGT
* * * ** *
68606814 ACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTTGTACTAAGTGCAGGCT
66 ACTAAGTGCAAGCTACTATGCGTACCAGATAACTTCGATCAAGTGTG-TAAAATAAGTGCAGGCT
68606879 ACTACGTGTATCAGATGGTT
130 ACTACGTGTATCAGATGGTT
* * * *
68606899 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGAATAATTGGTTACATGTGTAGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGAATAATTGGTCACATGTGTAGT
* * *
68606964 ACTAAGTGCAAGCTACTATGCGTACCAGATAACTTTGGCTACAAGTGTG-AAAATATGTGCAGGC
66 ACTAAGTGCAAGCTACTATGCGTACCAGATAAC-TTCGAT-CAAGTGTGTAAAATAAGTGCAGGC
68607028 AACTGAGTAT
Statistics
Matches: 113, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
150 102 0.90
151 4 0.04
152 7 0.06
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (149 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGAATAATTGGTCACATGTGTAGT
ACTAAGTGCAAGCTACTATGCGTACCAGATAACTTCGATCAAGTGTGTAAAATAAGTGCAGGCTA
CTACGTGTATCAGATGGTT
Found at i:68613192 original size:43 final size:42
Alignment explanation
Indices: 68613144--68613288 Score: 143
Period size: 43 Copynumber: 3.4 Consensus size: 42
68613134 GTAAAACCAC
*
68613144 GTCTGGGACGTTGGCATC-AATTTGAAATTACGTGTAAGACTAT
1 GTCTGGGACGTTGGCATCGAATTTG--ATTACATGTAAGACTAT
* ** * * *
68613187 GTCTGGGACATCAGCATCGTATTTGATTTCATGTAAGA-TCCT
1 GTCTGGGACGTTGGCATCGAATTTGATTACATGTAAGACT-AT
* *
68613229 GTCTGGGACAG-TGGCATCGATATTTGATTACATGTAAGACCAC
1 GTCTGGGAC-GTTGGCATCGA-ATTTGATTACATGTAAGACTAT
68613272 GTCTGGGACGTTGGCAT
1 GTCTGGGACGTTGGCAT
68613289 TGTACTAGCT
Statistics
Matches: 81, Mismatches: 15, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
41 1 0.01
42 28 0.35
43 47 0.58
44 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (42 bp):
GTCTGGGACGTTGGCATCGAATTTGATTACATGTAAGACTAT
Found at i:68613234 original size:42 final size:43
Alignment explanation
Indices: 68613170--68613280 Score: 138
Period size: 42 Copynumber: 2.6 Consensus size: 43
68613160 TCAATTTGAA
* *
68613170 ATTACGTGTAAGACTATGTCTGGGACA-TCAGCATCG-TATTTG
1 ATTACATGTAAGACCATGTCTGGGACAGT-AGCATCGATATTTG
* *
68613212 ATTTCATGTAAGATCC-TGTCTGGGACAGTGGCATCGATATTTG
1 ATTACATGTAAGA-CCATGTCTGGGACAGTAGCATCGATATTTG
*
68613255 ATTACATGTAAGACCACGTCTGGGAC
1 ATTACATGTAAGACCATGTCTGGGAC
68613281 GTTGGCATTG
Statistics
Matches: 59, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
42 30 0.51
43 29 0.49
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
ATTACATGTAAGACCATGTCTGGGACAGTAGCATCGATATTTG
Found at i:68617426 original size:34 final size:33
Alignment explanation
Indices: 68617388--68617452 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 33
68617378 ACAATAATAC
*
68617388 TGTGGGCCTTAGCCTAATACAGTGACAGTATCAG
1 TGTGGGCCTTAGCCCAATACAGT-ACAGTATCAG
* *
68617422 TGTGGGCCTTAGCCCATTTCAGTACAGTATC
1 TGTGGGCCTTAGCCCAATACAGTACAGTATC
68617453 CAAAATGTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 8 0.29
34 20 0.71
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (33 bp):
TGTGGGCCTTAGCCCAATACAGTACAGTATCAG
Found at i:68618968 original size:39 final size:40
Alignment explanation
Indices: 68618894--68618972 Score: 106
Period size: 39 Copynumber: 2.0 Consensus size: 40
68618884 AGCTCACAGG
* * *
68618894 TCACACCGCAAAACTAAAAGATGAGTATCAAGAAAAAGAA
1 TCACACAGCAAAACCAAAAGATGAGAATCAAGAAAAAGAA
* *
68618934 TCACACAGCAAAACCGAAA-ATGAGAATTAAGAAAAAGAA
1 TCACACAGCAAAACCAAAAGATGAGAATCAAGAAAAAGAA
68618973 AAAGTAGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
39 18 0.53
40 16 0.47
ACGTcount: A:0.57, C:0.16, G:0.15, T:0.11
Consensus pattern (40 bp):
TCACACAGCAAAACCAAAAGATGAGAATCAAGAAAAAGAA
Found at i:68622214 original size:43 final size:43
Alignment explanation
Indices: 68622125--68622237 Score: 122
Period size: 43 Copynumber: 2.6 Consensus size: 43
68622115 TGTGATTACA
* * *
68622125 TGTAAGACCATGTCTGGGACATTAGCATTGTATTGATATTAAG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTATCGATATTAAG
* *
68622168 TGTAAGACCATCTCTGGGACATTGGCATCGTTAATCGAT-TT-CG
1 TGTAAGACCATGTCTGGGACATTGGCATCG-T-ATCGATATTAAG
* * *
68622211 TGTAAAACCTTGTCTGGGACAGTGGCA
1 TGTAAGACCATGTCTGGGACATTGGCA
68622238 CCGATATGTG
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
43 51 0.86
44 3 0.05
45 5 0.08
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTATCGATATTAAG
Found at i:68625862 original size:44 final size:44
Alignment explanation
Indices: 68625775--68625898 Score: 117
Period size: 44 Copynumber: 2.8 Consensus size: 44
68625765 GTCACATGTA
* * * * * **
68625775 TCGCATCCATTATGAACTCGGACCAACTCAACGAGTTTGGATGC
1 TCGCATTCATAATGAACTCAGACCAACTCAATGAGCTCAGATGC
68625819 TCGCATTCATAATGAACTCAGACCAACTCAATGAGCTCAGATGC
1 TCGCATTCATAATGAACTCAGACCAACTCAATGAGCTCAGATGC
** *
68625863 -CTTATAT-ATATCATGAACCCAGACCAACTCAATGAG
1 TCGCAT-TCATA--ATGAACTCAGACCAACTCAATGAG
68625899 TTCGGATTTC
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
43 6 0.09
44 38 0.57
45 23 0.34
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (44 bp):
TCGCATTCATAATGAACTCAGACCAACTCAATGAGCTCAGATGC
Found at i:68628737 original size:42 final size:42
Alignment explanation
Indices: 68628629--68628792 Score: 118
Period size: 43 Copynumber: 3.8 Consensus size: 42
68628619 AACATATACA
* * * * *
68628629 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCA-AACATCA
1 ATGCCAACGTCCAAGACATGGTCTTACACGAAATCAGAAC--CG
* * *
68628672 ATGCC-ACTGTCCTATACAGGGTCTTACACGAAATCAGATA-CG
1 ATGCCAAC-GTCCAAGACATGGTCTTACACGAAATCAGA-ACCG
* * * *
68628714 ATGCCGATGTCCAAGACATGGTCTTTCACGTAAAACAGAAGCCG
1 ATGCCAACGTCCAAGACATGGTCTTACACG-AAATCAGAA-CCG
* **
68628758 ATGCCAACGTCCCAGATTTGGTCTTACACGAAATC
1 ATGCCAACGTCCAAGACATGGTCTTACACGAAATC
68628793 CTATGTCATG
Statistics
Matches: 94, Mismatches: 20, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
42 27 0.29
43 39 0.41
44 27 0.29
45 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (42 bp):
ATGCCAACGTCCAAGACATGGTCTTACACGAAATCAGAACCG
Found at i:68634006 original size:28 final size:27
Alignment explanation
Indices: 68633975--68634078 Score: 120
Period size: 28 Copynumber: 3.7 Consensus size: 27
68633965 ATATACATGA
68633975 ATATGGCCCACTTGGCCCAATCTCATTT
1 ATATGGCCCA-TTGGCCCAATCTCATTT
* * *
68634003 ATATAGCCCATCTAGCCCAAT-TCACATT
1 ATATGGCCCAT-TGGCCCAATCTCA-TTT
68634031 ATATGGCCCATTAGGCCCAATCTCATTT
1 ATATGGCCCATT-GGCCCAATCTCATTT
*
68634059 ATATGGCCCATCCGGCCCAA
1 ATATGGCCCAT-TGGCCCAA
68634079 ATCACATTAC
Statistics
Matches: 64, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
27 5 0.08
28 56 0.88
29 3 0.05
ACGTcount: A:0.26, C:0.33, G:0.13, T:0.28
Consensus pattern (27 bp):
ATATGGCCCATTGGCCCAATCTCATTT
Found at i:68634035 original size:56 final size:56
Alignment explanation
Indices: 68633975--68634087 Score: 174
Period size: 56 Copynumber: 2.0 Consensus size: 56
68633965 ATATACATGA
* *
68633975 ATATGGCCCACTT-GGCCCAATCTCATTTATATAGCCCATCTAGCCCAATTCACATT
1 ATATGGCCCA-TTAGGCCCAATCTCATTTATATAGCCCATCCAGCCCAAATCACATT
* *
68634031 ATATGGCCCATTAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAAATCACATT
1 ATATGGCCCATTAGGCCCAATCTCATTTATATAGCCCATCCAGCCCAAATCACATT
68634087 A
1 A
68634088 CATTCATTCT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
55 2 0.04
56 50 0.96
ACGTcount: A:0.27, C:0.32, G:0.12, T:0.28
Consensus pattern (56 bp):
ATATGGCCCATTAGGCCCAATCTCATTTATATAGCCCATCCAGCCCAAATCACATT
Found at i:68634327 original size:16 final size:16
Alignment explanation
Indices: 68634308--68634344 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
68634298 AAACTTTCAA
68634308 CTTTTCAGCATTTCGG
1 CTTTTCAGCATTTCGG
*
68634324 CTTTTCGGCATTTCGG
1 CTTTTCAGCATTTCGG
68634340 CTTTT
1 CTTTT
68634345 GCCGATCTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.08, C:0.24, G:0.19, T:0.49
Consensus pattern (16 bp):
CTTTTCAGCATTTCGG
Found at i:68639507 original size:28 final size:27
Alignment explanation
Indices: 68639476--68639580 Score: 129
Period size: 28 Copynumber: 3.7 Consensus size: 27
68639466 ACAGACATGC
68639476 ATATGGCCCACTTGGCCCAATCTCATTT
1 ATATGGCCCA-TTGGCCCAATCTCATTT
* * *
68639504 ATATGGCCCATCTAGCCCAATTTACATTC
1 ATATGGCCCAT-TGGCCCAATCT-CATTT
68639533 ATATGGCCCATTGGGCCCAATCTCATTT
1 ATATGGCCCATT-GGCCCAATCTCATTT
*
68639561 ATATGGCCCATCTCGCCCAA
1 ATATGGCCCAT-TGGCCCAA
68639581 ATCACATTAC
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
27 1 0.02
28 41 0.62
29 24 0.36
ACGTcount: A:0.24, C:0.32, G:0.14, T:0.30
Consensus pattern (27 bp):
ATATGGCCCATTGGCCCAATCTCATTT
Found at i:68639540 original size:57 final size:57
Alignment explanation
Indices: 68639470--68639580 Score: 188
Period size: 57 Copynumber: 1.9 Consensus size: 57
68639460 ACCCTTACAG
68639470 ACATGCATATGGCCCACTT-GGCCCAATCTCATTTATATGGCCCATCTAGCCCAATTT
1 ACATGCATATGGCCCA-TTGGGCCCAATCTCATTTATATGGCCCATCTAGCCCAATTT
* *
68639527 ACATTCATATGGCCCATTGGGCCCAATCTCATTTATATGGCCCATCTCGCCCAA
1 ACATGCATATGGCCCATTGGGCCCAATCTCATTTATATGGCCCATCTAGCCCAA
68639581 ATCACATTAC
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
56 2 0.04
57 49 0.96
ACGTcount: A:0.24, C:0.32, G:0.14, T:0.29
Consensus pattern (57 bp):
ACATGCATATGGCCCATTGGGCCCAATCTCATTTATATGGCCCATCTAGCCCAATTT
Found at i:68643874 original size:42 final size:42
Alignment explanation
Indices: 68643828--68643935 Score: 112
Period size: 44 Copynumber: 2.5 Consensus size: 42
68643818 CCACTGTTCC
* *
68643828 AGACAGGGTCTTACACGAAATCAGATA-CGATGCCGATGTCCA
1 AGACAGGGTCTTACACGAAATCAGA-AGCGATGCCAACGTCCA
* * *
68643870 AGACATGGTCTTACACGTAAAACAGAAGTCGATGCCAACGTCCC
1 AGACAGGGTCTTACACG-AAATCAGAAG-CGATGCCAACGTCCA
*
68643914 AGA-TGTGGTCTTACACGAAATC
1 AGACAG-GGTCTTACACGAAATC
68643936 TTATAACGAA
Statistics
Matches: 54, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
42 17 0.31
43 11 0.20
44 26 0.48
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.20
Consensus pattern (42 bp):
AGACAGGGTCTTACACGAAATCAGAAGCGATGCCAACGTCCA
Found at i:68647025 original size:27 final size:27
Alignment explanation
Indices: 68646995--68647192 Score: 263
Period size: 27 Copynumber: 7.3 Consensus size: 27
68646985 TACTGAAATC
** *
68646995 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * *
68647022 CCCTCGATTTATAGAATTATCGTTTCA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
68647049 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * *
68647076 CCCTCGATTTATAGAATTGCCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
68647103 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
68647130 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
68647157 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
68647184 CCCTCGATT
1 CCCTCGATT
68647193 GTGAAATTAC
Statistics
Matches: 151, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 149 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.09, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Found at i:68647110 original size:81 final size:81
Alignment explanation
Indices: 68646995--68647192 Score: 299
Period size: 81 Copynumber: 2.4 Consensus size: 81
68646985 TACTGAAATC
* * *
68646995 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
*
68647060 CAAAATTACCGTTTTA
66 CAAAATTACCATTTTA
* *
68647076 CCCTCGATTTATAGAATTGCCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
68647141 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * *
68647157 CCCTC-AGTTTACAAAATTACCGTTTTACCCTCGATT
1 CCCTCGA-TTTATAGAATTACCATTTTACCCTCGATT
68647193 GTGAAATTAC
Statistics
Matches: 106, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
80 1 0.01
81 105 0.99
ACGTcount: A:0.27, C:0.25, G:0.09, T:0.38
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:68647254 original size:27 final size:27
Alignment explanation
Indices: 68647224--68647374 Score: 162
Period size: 27 Copynumber: 5.6 Consensus size: 27
68647214 TGTAGGATAG
68647224 AATTACCAAAATACCCCTAATTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
*
68647251 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* * ** *
68647278 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
* *
68647305 AATTATCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
* * **
68647332 AATTGCCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCTAATTTGTAA
68647359 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
68647375 TTGACTTTCT
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
26 5 0.05
27 95 0.91
28 4 0.04
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:68647375 original size:54 final size:56
Alignment explanation
Indices: 68647224--68647375 Score: 179
Period size: 54 Copynumber: 2.8 Consensus size: 56
68647214 TGTAGGATAG
* *
68647224 AATTACCAAAATACCCCTAATTTGTAAAATTACCA-AAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAAAATTACCAGAAATACCCTCTAATTTGTAA
* * * * *
68647278 AATTACCGAAATACCACTGGTTTGTGAAATTATC-GAAATACCCTC-AATTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAAAATTACCAGAAATACCCTCTAATTTGTAA
* **
68647332 AATTGCCAAAATACCCCTGATTTACAAAATTA-CAGAAATACCCT
1 AATTACCAAAATACCCCTGATTTGTAAAATTACCAGAAATACCCT
68647376 TGACTTTCTA
Statistics
Matches: 81, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
53 1 0.01
54 79 0.98
55 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.29
Consensus pattern (56 bp):
AATTACCAAAATACCCCTGATTTGTAAAATTACCAGAAATACCCTCTAATTTGTAA
Found at i:68648398 original size:25 final size:24
Alignment explanation
Indices: 68648360--68648429 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
68648350 AGGAAGTGCT
*
68648360 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
68648384 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
68648409 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
68648430 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:68648641 original size:42 final size:42
Alignment explanation
Indices: 68648577--68648668 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
68648567 TAGTCTCCCC
* * *
68648577 AAATAGGCTTGCATACATTCATTGACATTACCTGTGATATTG
1 AAATGGGCTTCCATACATTCATTGACATTACATGTGATATTG
68648619 AAATGGGCTTCCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTCCATACATTCATTGACATTACATGTGATATTG
68648661 AAATGGGC
1 AAATGGGC
68648669 CTAAGGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTCCATACATTCATTGACATTACATGTGATATTG
Found at i:68648725 original size:31 final size:31
Alignment explanation
Indices: 68648687--68648814 Score: 222
Period size: 31 Copynumber: 4.2 Consensus size: 31
68648677 CATACCGTTT
68648687 ATATGATTTATGAAAAGGCTTCGGCCCAGTG
1 ATATGATTTATGAAAAGGCTTCGGCCCAGTG
*
68648718 ATATGATTTATGAAAAGGCTTCGGCCCAATG
1 ATATGATTTATGAAAAGGCTTCGGCCCAGTG
*
68648749 ATATGATTTATGAAAAGGCTTCAGCCCAGTG
1 ATATGATTTATGAAAAGGCTTCGGCCCAGTG
*
68648780 ATATGATTTATGGAAAGGCTTCGGCCCAGT-
1 ATATGATTTATGAAAAGGCTTCGGCCCAGTG
68648810 ATATG
1 ATATG
68648815 TCAAGAATAA
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 5 0.05
31 87 0.95
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (31 bp):
ATATGATTTATGAAAAGGCTTCGGCCCAGTG
Found at i:68650252 original size:27 final size:27
Alignment explanation
Indices: 68650229--68650364 Score: 164
Period size: 27 Copynumber: 5.0 Consensus size: 27
68650219 CAAAATTATT
*
68650229 AAAATACCCCTGTAGGGTAGAATTACT
1 AAAATACCCCTGTAGGGTAGAATTACC
*
68650256 GAAATACCCCTGTAGGGTAGAATTACC
1 AAAATACCCCTGTAGGGTAGAATTACC
* * *
68650283 AAAAAACCCTTGTAGGGTAGAAGTACC
1 AAAATACCCCTGTAGGGTAGAATTACC
* *
68650310 GAAATACCCATGTAGGGTAGAATTACC
1 AAAATACCCCTGTAGGGTAGAATTACC
* * * * *
68650337 GAGATACCCTTGTGGGGTAAAATTACC
1 AAAATACCCCTGTAGGGTAGAATTACC
68650364 A
1 A
68650365 TTTTGCCCTT
Statistics
Matches: 94, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (27 bp):
AAAATACCCCTGTAGGGTAGAATTACC
Found at i:68650346 original size:54 final size:54
Alignment explanation
Indices: 68650229--68650355 Score: 182
Period size: 54 Copynumber: 2.4 Consensus size: 54
68650219 CAAAATTATT
* * * *
68650229 AAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACC
1 AAAATACCCTTGTAGGGTAGAAGTACCGAAATACCCATGTAGGGTAGAATTACC
*
68650283 AAAAAACCCTTGTAGGGTAGAAGTACCGAAATACCCATGTAGGGTAGAATTACC
1 AAAATACCCTTGTAGGGTAGAAGTACCGAAATACCCATGTAGGGTAGAATTACC
* * *
68650337 GAGATACCCTTGTGGGGTA
1 AAAATACCCTTGTAGGGTA
68650356 AAATTACCAT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.23
Consensus pattern (54 bp):
AAAATACCCTTGTAGGGTAGAAGTACCGAAATACCCATGTAGGGTAGAATTACC
Found at i:68650373 original size:27 final size:27
Alignment explanation
Indices: 68650343--68650406 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
68650333 TACCGAGATA
*
68650343 CCCTTGTGGGGTAAAATTACCATTTTG
1 CCCTTGTGGGGTAAAATGACCATTTTG
* * **
68650370 CCCTTAG-GGTGTTAAATGACTGTTTTG
1 CCCTT-GTGGGGTAAAATGACCATTTTG
68650397 CCCTTGTGGG
1 CCCTTGTGGG
68650407 CAAGTGACTG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
26 1 0.03
27 27 0.93
28 1 0.03
ACGTcount: A:0.17, C:0.19, G:0.27, T:0.38
Consensus pattern (27 bp):
CCCTTGTGGGGTAAAATGACCATTTTG
Found at i:68650766 original size:20 final size:20
Alignment explanation
Indices: 68650719--68650766 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
68650709 CGAAGGCTAT
*
68650719 GTGCCGTTATTATGGGCTTC
1 GTGCCGATATTATGGGCTTC
** *
68650739 GTATCGATATTGTGGGCTTC
1 GTGCCGATATTATGGGCTTC
68650759 GTGCCGAT
1 GTGCCGAT
68650767 TATAGACCAG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.12, C:0.19, G:0.31, T:0.38
Consensus pattern (20 bp):
GTGCCGATATTATGGGCTTC
Found at i:68661550 original size:28 final size:28
Alignment explanation
Indices: 68661519--68661614 Score: 113
Period size: 28 Copynumber: 3.4 Consensus size: 28
68661509 TTTGGGCTGG
*
68661519 ATGGTCCATATAAATGAGATTGGGCCTA
1 ATGGGCCATATAAATGAGATTGGGCCTA
* *
68661547 ATGGGCCATATGAATTTGA-ATTGGGCCTG
1 ATGGGCCATAT-AA-ATGAGATTGGGCCTA
* *
68661576 ATGTGCCATATATATGAGATTGGGCCTA
1 ATGGGCCATATAAATGAGATTGGGCCTA
*
68661604 GTGGGCCATAT
1 ATGGGCCATAT
68661615 GTATGTATGT
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
27 3 0.05
28 29 0.52
29 21 0.38
30 3 0.05
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (28 bp):
ATGGGCCATATAAATGAGATTGGGCCTA
Found at i:68663726 original size:25 final size:25
Alignment explanation
Indices: 68663693--68663743 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
68663683 TGCGGAGTGA
68663693 AGAGAGGTGCATGTTTCAAATGTGG
1 AGAGAGGTGCATGTTTCAAATGTGG
* * *
68663718 AGAGCGGTGTATGTTTCAGATGTGG
1 AGAGAGGTGCATGTTTCAAATGTGG
68663743 A
1 A
68663744 TCTCTTGACC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.25, C:0.08, G:0.37, T:0.29
Consensus pattern (25 bp):
AGAGAGGTGCATGTTTCAAATGTGG
Found at i:68669662 original size:761 final size:762
Alignment explanation
Indices: 68668310--68669838 Score: 2850
Period size: 761 Copynumber: 2.0 Consensus size: 762
68668300 CTACTCAAGC
68668310 TCATTTGAGCCACATATAGTAATTTAGTTTGTTCATACTCAATTAGAAACATTTCTCCTTACAAA
1 TCATTTGAGCCACATATAGTAATTTAGTTTGTTCATACTCAATTAGAAACATTTCTCCTTACAAA
68668375 TTATCAAAACATACACAATGTAACCCATTGAGCTCATGACCGAATGCTTCATGCATCACAAACAC
66 TTATCAAAACATACACAATGTAACCCATTGAGCTCATGACCGAATGCTTCATGCATCACAAACAC
*
68668440 AAAATCATACACATGGGTCATGTTAGGAGCTTCAAAACCAATTTAAATTTCTCAAAATCCAAAGA
131 AAAATCATACACATGGGTAATGTTAGGAGCTTCAAAACCAATTTAAATTTCTCAAAATCCAAAGA
68668505 AAAACATATGAAATCATACCTTAATTCCCAACACAAGATGGCCGAATGCCTTAGGTGTTCTTTCT
196 AAAACATATGAAATCATACCTTAATTCCCAACACAAGATGGCCGAATGCCTTAGGTGTTCTTTCT
*
68668570 TCCATTTCTTGTTTAGTTTCGGCAAAAGGGGAGAAAAAAAATGAGAAACTTTGTTTTTATCACCC
261 TCCATTTCTTGTTTAGTTTCGGCAAAAGGGGAGAAAAAAAATGAGAAACTTTGTTTTAATCACCC
*
68668635 TTTTTCTATTATTAATTCATGGTTTTCTAATATAAAACTATTTAATATTATTTCACTAATATACA
326 TTTTTCTATTACTAATTCATGGTTTTCTAATATAAAACTATTTAATATTATTTCACTAATATACA
*
68668700 ATACATAAAATGCCAAATTTTTCATCATAATTACCGTCCACTATAATCATAGTGGTCCATTTGAC
391 ATACACAAAATGCCAAATTTTTCATCATAATTACCGTCCACTATAATCATAGTGGTCCATTTGAC
68668765 ATGCAAATCCTCTATGATGCTATCCATATACAATTTGGCCACTTCAACTTTTACCTATCACATTT
456 ATGCAAATCCTCTATGATGCTATCCATATACAATTTGGCCACTTCAACTTTTACCTATCACATTT
* *
68668830 TTATGGTTTATTAATTGAGTCCCTTTTTATAATTTGACATCCAAATAACAAAATTAACGCATCAA
521 TTATGGTTTAATAATTGAGTCCCTTTTTATAATTTGACATCCAAATAACAAAATTAAAGCATCAA
68668895 TTTTTTTTATTTAAAATTATTATTA-TATATTTTTTTCACACATGGAAATTCAAATAATAAAACA
586 -TTTTTTTATTTAAAATTATTATTATTATATTTTTTTCACACATGGAAATTCAAATAATAAAACA
68668959 TAGAATTTAATTTAATCCTTTCTTATTAATTAAACACCCAAACGATCACATCTTCGTACGAAATC
650 TAGAATTTAATTTAATCCTTTCTTATTAATTAAACACCCAAACGATCACATCTTCGTACGAAATC
68669024 TTCACATATGCTAATTCACATATAATGAACACAGATAATAATAATTAA
715 TTCACATATGCTAATTCACATATAATGAACACAGATAATAATAATTAA
* *
68669072 TCATTTGAGCCACATATAGTAATTTAGTTTGTTCATGCTTAATTAGAAACATTTCTCCTTACAAA
1 TCATTTGAGCCACATATAGTAATTTAGTTTGTTCATACTCAATTAGAAACATTTCTCCTTACAAA
*
68669137 TTATCAAAGCATACACAATGTAACCCATTGAGCTCATGACCGAATGCTTCATGCATCACAAACAC
66 TTATCAAAACATACACAATGTAACCCATTGAGCTCATGACCGAATGCTTCATGCATCACAAACAC
68669202 AAAATCATACACATGGGTAATGTTAGGAGCTTCAAAACCAATTTAAATTTCTCAAAATCCAAAGA
131 AAAATCATACACATGGGTAATGTTAGGAGCTTCAAAACCAATTTAAATTTCTCAAAATCCAAAGA
68669267 AAAACATATGAAATCATACCTTAATTCCCAACACAAGATGGTCC-AATGCCTTAGGTGTTCTTTC
196 AAAACATATGAAATCATACCTTAATTCCCAACACAAGATGG-CCGAATGCCTTAGGTGTTCTTTC
* *
68669331 TTCCATTTCTTGTTTAGTTTCGGCAAAATGGGAG-AAGAAAATGAGAAACTTTGTTTTAATCACC
260 TTCCATTTCTTGTTTAGTTTCGGCAAAAGGGGAGAAAAAAAATGAGAAACTTTGTTTTAATCACC
68669395 CTTTTTCTATTACTAATTCATGGTTTTCTAATATAAAACTATTTAATATTATTTCACTAATATAC
325 CTTTTTCTATTACTAATTCATGGTTTTCTAATATAAAACTATTTAATATTATTTCACTAATATAC
68669460 AATACACAAAATGCCAAATTTTTCATCATAATTACCGTCCACTATAATCATAGTGGTCCATTTGA
390 AATACACAAAATGCCAAATTTTTCATCATAATTACCGTCCACTATAATCATAGTGGTCCATTTGA
68669525 CATGCAAATCCTCTATGATGCTATCCATATACAATTTGGCCACTTCAACTTTT-CGCTATCACAT
455 CATGCAAATCCTCTATGATGCTATCCATATACAATTTGGCCACTTCAACTTTTAC-CTATCACAT
68669589 TTTTATGGTTTAATAATTGAGTCCCTTTTTATAATTTGACATCCAAATAACAAAATTAAAGCATC
519 TTTTATGGTTTAATAATTGAGTCCCTTTTTATAATTTGACATCCAAATAACAAAATTAAAGCATC
* * * *
68669654 AATTTTTTTATTTTAATTTATTATTATTATATTTTTTTCACACATGGAAATTCACATAATAAAGC
584 AATTTTTTTATTTAAAATTATTATTATTATATTTTTTTCACACATGGAAATTCAAATAATAAAAC
*
68669719 ATAGAATTTAATTTAATCCTTTCTTATTAATTAAACACCCAAACGATCACATTTTCGTACGAAAT
649 ATAGAATTTAATTTAATCCTTTCTTATTAATTAAACACCCAAACGATCACATCTTCGTACGAAAT
68669784 CTTCACATATGCTAATTCACATATAATGAACACAGATAATAATAATTAA
714 CTTCACATATGCTAATTCACATATAATGAACACAGATAATAATAATTAA
*
68669833 TTATTT
1 TCATTT
68669839 TTCTGACTCA
Statistics
Matches: 747, Mismatches: 17, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
760 23 0.03
761 437 0.59
762 285 0.38
763 2 0.00
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (762 bp):
TCATTTGAGCCACATATAGTAATTTAGTTTGTTCATACTCAATTAGAAACATTTCTCCTTACAAA
TTATCAAAACATACACAATGTAACCCATTGAGCTCATGACCGAATGCTTCATGCATCACAAACAC
AAAATCATACACATGGGTAATGTTAGGAGCTTCAAAACCAATTTAAATTTCTCAAAATCCAAAGA
AAAACATATGAAATCATACCTTAATTCCCAACACAAGATGGCCGAATGCCTTAGGTGTTCTTTCT
TCCATTTCTTGTTTAGTTTCGGCAAAAGGGGAGAAAAAAAATGAGAAACTTTGTTTTAATCACCC
TTTTTCTATTACTAATTCATGGTTTTCTAATATAAAACTATTTAATATTATTTCACTAATATACA
ATACACAAAATGCCAAATTTTTCATCATAATTACCGTCCACTATAATCATAGTGGTCCATTTGAC
ATGCAAATCCTCTATGATGCTATCCATATACAATTTGGCCACTTCAACTTTTACCTATCACATTT
TTATGGTTTAATAATTGAGTCCCTTTTTATAATTTGACATCCAAATAACAAAATTAAAGCATCAA
TTTTTTTATTTAAAATTATTATTATTATATTTTTTTCACACATGGAAATTCAAATAATAAAACAT
AGAATTTAATTTAATCCTTTCTTATTAATTAAACACCCAAACGATCACATCTTCGTACGAAATCT
TCACATATGCTAATTCACATATAATGAACACAGATAATAATAATTAA
Found at i:68677467 original size:27 final size:27
Alignment explanation
Indices: 68677437--68677488 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
68677427 ATATATCTGT
*
68677437 TCTGGTGGCTTAGCCACAATATTTGCA
1 TCTGGTGACTTAGCCACAATATTTGCA
* * *
68677464 TCTGGTTACTTTGTCACAATATTTG
1 TCTGGTGACTTAGCCACAATATTTG
68677489 GCAGCCTCAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40
Consensus pattern (27 bp):
TCTGGTGACTTAGCCACAATATTTGCA
Found at i:68684390 original size:37 final size:37
Alignment explanation
Indices: 68684340--68684418 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
68684330 TTATTACGAA
* * * *
68684340 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACAAAGTCATCGG
68684377 GTCTTACCCGGACAAAATCCCCACACAAAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACAAAGTCATCGG
68684414 GTCTT
1 GTCTT
68684419 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACAAAGTCATCGG
Found at i:68684662 original size:49 final size:49
Alignment explanation
Indices: 68684537--68684668 Score: 173
Period size: 47 Copynumber: 2.8 Consensus size: 49
68684527 CCCTTCGGGA
* * * *
68684537 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCACTAGGC
* * *
68684584 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCACTAGGC
68684631 CTTATCACATATATATACACTTTCACATTCATCACATC
1 CTTATCACATATATATACACTTTCACATTCATCACATC
68684669 CAATCCTAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
46 1 0.01
47 43 0.60
49 28 0.39
ACGTcount: A:0.28, C:0.32, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCACTAGGC
Found at i:68684804 original size:47 final size:47
Alignment explanation
Indices: 68684753--68684875 Score: 246
Period size: 47 Copynumber: 2.6 Consensus size: 47
68684743 ACTACCTTAT
68684753 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
68684800 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
68684847 CATATATACACTTTCACATTCATCACATC
1 CATATATACACTTTCACATTCATCACATC
68684876 CAATCCTAAA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 76 1.00
ACGTcount: A:0.31, C:0.30, G:0.07, T:0.33
Consensus pattern (47 bp):
CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
Found at i:68684920 original size:207 final size:208
Alignment explanation
Indices: 68684548--68684952 Score: 731
Period size: 207 Copynumber: 1.9 Consensus size: 208
68684538 TTATCACATT
* * * *
68684548 TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTTCACATTCA
1 TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCA
68684613 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCCAATCCTAA
66 TCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATCCAATCCTAA
68684678 ATCAAAATATAGATTTTCATGTATTCACATCACAATTATCCAAATATACTTCACATACCACATAT
130 ATCAAAATATAGATTTTCATGTATTCACATCACAATTATCCAAATATACTTCACATACCACATAT
68684743 ACTACCTTATCATA
195 ACTACCTTATCATA
* * *
68684757 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCA
68684822 TCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCCAATCCTAAA
66 TCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCCAATCCTAAA
68684886 TCAAAATATAGATTTTCATGTATTCACATCACAATTATCCAAATATACTTCACATACCACATATA
131 TCAAAATATAGATTTTCATGTATTCACATCACAATTATCCAAATATACTTCACATACCACATATA
68684951 CT
196 CT
68684953 TTCACGTATA
Statistics
Matches: 189, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
207 105 0.56
209 84 0.44
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.32
Consensus pattern (208 bp):
TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCA
TCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCCAATCCTAAA
TCAAAATATAGATTTTCATGTATTCACATCACAATTATCCAAATATACTTCACATACCACATATA
CTACCTTATCATA
Found at i:68687903 original size:40 final size:40
Alignment explanation
Indices: 68687871--68688102 Score: 329
Period size: 40 Copynumber: 5.8 Consensus size: 40
68687861 CCAGCATGAC
* * * *
68687871 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * * *
68687911 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
68687951 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
68687991 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
68688031 TGCTCTTCGAGACTTAGCCCGGATACATTACTAGAACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
68688071 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
68688103 CTCAATTCTC
Statistics
Matches: 171, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 171 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:68689377 original size:37 final size:37
Alignment explanation
Indices: 68689316--68689394 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
68689306 TTATTACGAA
* * *
68689316 GTCTTACCCAGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCTCCACACGAAGTCATCCG
* *
68689353 GTCTTACCCGGACAAAAATC-CCACACGTAGTCATCCG
1 GTCTTACCCAGAC-AAAATCTCCACACGAAGTCATCCG
68689390 GTCTT
1 GTCTT
68689395 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
37 31 0.86
38 5 0.14
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCTCCACACGAAGTCATCCG
Found at i:68689591 original size:47 final size:47
Alignment explanation
Indices: 68689513--68690321 Score: 1510
Period size: 47 Copynumber: 17.2 Consensus size: 47
68689503 CCCTTCGGGA
* * * * * *
68689513 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68689560 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68689607 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68689654 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68689701 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68689748 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68689795 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68689842 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68689889 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68689936 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68689983 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68690030 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68690077 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68690124 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68690171 CCTATTCACATATATACACTTTCACATTAATCACATCGGCCATTAAGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68690219 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68690266 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68690313 CTTATCACA
1 CTTATCACA
68690322 ATTTAGAATT
Statistics
Matches: 745, Mismatches: 16, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
47 701 0.94
48 44 0.06
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68693695 original size:40 final size:40
Alignment explanation
Indices: 68693651--68693766 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 40
68693641 GAATACATGT
* * *
68693651 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* * ***
68693691 CACCAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* **
68693731 CACTAGCACGAATGCTCTTCGGAATTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGAT
68693767 TTAGTAACTC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
Found at i:68693791 original size:40 final size:40
Alignment explanation
Indices: 68693667--68693928 Score: 216
Period size: 40 Copynumber: 6.5 Consensus size: 40
68693657 CATGATTGCT
* * * *
68693667 CTTCGGGACCTAGCCCGGATATAAC-AC-CAGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTC-GCACCAATGC
** * ** * *
68693706 TCTTCGGAACTTAGTCCGGATACCTC-ACTAGCACGAATGC
1 -CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAATGC
* *
68693746 TCTTCGGAAT-TTAGCCCGGATTTAGT-AACTCGCACCAATGC
1 -CTTCGG-GTCTTAGCCCGGATATA-TCAACTCGCACCAATGC
* *
68693787 CTTCGGGTCTTAGCCCGAATATATCAACTTGCA-CAATTGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAA-TGC
* *
68693827 CTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAATGC
* *
68693867 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGC-TCAATTGC
1 CTTCGGGTCTTAGCCCGGATAT-ATCAACTCGCACCAA-TGC
*
68693907 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
68693929 CATTCAAATG
Statistics
Matches: 185, Mismatches: 27, Indels: 20
0.80 0.12 0.09
Matches are distributed among these distances:
39 7 0.04
40 159 0.86
41 19 0.10
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAATGC
Found at i:68693799 original size:80 final size:78
Alignment explanation
Indices: 68693677--68693928 Score: 242
Period size: 80 Copynumber: 3.2 Consensus size: 78
68693667 CTTCGGGACC
* * ** * **
68693677 TAGCCCGGATATAAC-AC-CAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCTCACTAGCAC
1 TAGCCCGGATATATCAACTC-GCACAAATGC-CTTCGGGTCTTAGCCCGGATAAATCACTAGCAC
68693740 GAA-TGCTCTTCGGAATT
64 -AATTGC-CTTCGG-ATT
* * * * *
68693757 TAGCCCGGATTTAGT-AACTCGCACCAATGCCTTCGGGTCTTAGCCCGAATATATCAACTTGCAC
1 TAGCCCGGATATA-TCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAATC-ACTAGCAC
*
68693821 AATTGCCTTCGGGTCT
64 AATTGCCTTCGGAT-T
* *
68693837 TAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCTCA
1 TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATA-AATCACTAGCACA
*
68693902 ATTGCCTTCGGGACT
65 ATTGCCTTC-GGATT
68693917 TAGCCCGGATAT
1 TAGCCCGGATAT
68693929 CATTCAAATG
Statistics
Matches: 143, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
79 2 0.01
80 114 0.80
81 26 0.18
82 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (78 bp):
TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAATCACTAGCACAA
TTGCCTTCGGATT
Found at i:68694256 original size:29 final size:29
Alignment explanation
Indices: 68694217--68694295 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
68694207 CTTAATAATC
*
68694217 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
68694247 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
68694276 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
68694296 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:68694338 original size:43 final size:43
Alignment explanation
Indices: 68694277--68694851 Score: 1035
Period size: 43 Copynumber: 13.4 Consensus size: 43
68694267 TGCATTTCAA
*
68694277 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAATACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
68694320 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
68694363 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAATACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
68694406 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
68694449 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAATACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
68694492 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
68694535 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAATACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
68694578 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
68694621 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAATACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
68694664 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
68694707 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAATACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
68694750 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
68694793 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
68694836 GCCCGCA-ACTTAGTGC
1 GCCCGCACACTTAGTGC
68694852 TGAAAACCAA
Statistics
Matches: 509, Mismatches: 23, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
42 9 0.02
43 500 0.98
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.24
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:68702844 original size:99 final size:100
Alignment explanation
Indices: 68702676--68702914 Score: 320
Period size: 99 Copynumber: 2.4 Consensus size: 100
68702666 CAGTTTTAGG
* ** *
68702676 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAGTTTCGATCAAGTGTGTAGTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCGATAGCTTCGATCAAGTGTGTAGTA
* * * **
68702741 CTAAGTGCAGGCTACTACGTGTACCGGATTGATAGG
65 CTAAGTGCAAGCTACTACGTGTACCAGATGGATAAA
** *
68702777 TTGCATGTGTAGTACTAAGTGCA-GCTACTATGTGTACCGTTTA-CTTCGATCAAGTGTGTAGTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCG-ATAGCTTCGATCAAGTGTGTAGTA
*
68702840 CTAAGTGCAAGCTACTACGTGTATCAGATGGATAAA
65 CTAAGTGCAAGCTACTACGTGTACCAGATGGATAAA
*
68702876 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACC
68702915 AAATTGATAG
Statistics
Matches: 120, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
99 73 0.61
100 27 0.22
101 20 0.17
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGATAGCTTCGATCAAGTGTGTAGTAC
TAAGTGCAAGCTACTACGTGTACCAGATGGATAAA
Found at i:68702885 original size:50 final size:50
Alignment explanation
Indices: 68702676--68702953 Score: 278
Period size: 50 Copynumber: 5.6 Consensus size: 50
68702666 CAGTTTTAGG
* * ** * * * *
68702676 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAGTTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-ATAGA
* *
68702727 TCA-AGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGATAGG
1 TCACA-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
** * * *
68702777 TTGCATGTGTAGTACTAAGTGCA-GCTACTATGTGTACC-G-TTTACTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGA
* * * *
68702826 TCA-AGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGATAAA
1 TCACA-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
* *
68702876 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
*
68702926 TCGCATGTGTAGTACTAAGTGCAGGCTA
1 TCACATGTGTAGTACTAAGTGCAGGCTA
68702954 TTATGGGTAC
Statistics
Matches: 188, Mismatches: 30, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
47 3 0.02
48 2 0.01
49 35 0.19
50 105 0.56
51 41 0.22
52 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
Found at i:68712013 original size:219 final size:219
Alignment explanation
Indices: 68711633--68712069 Score: 660
Period size: 219 Copynumber: 2.0 Consensus size: 219
68711623 CCAAAACATG
* **
68711633 TTTTGGGAGTAGTCCAGGACAAAACCGAGAACTTCAAAAATTTTCTTGAAACTTAGAAAATTTTT
1 TTTTGGGAGTAGTCCAAGACAAAACCGAGAACTTCAAAAATTTTCACGAAACTTAGAAAATTTTT
* * * * * *
68711698 CCACTAGATAAAGGTCATATGTCTGCGTGGATATGGGACATGCCCGGGTGGGCAGGCCGTGTGGT
66 CCACTAAACAAAGGTCACATGTCTGCGTGGATATGGGACATACCCGGATGGGCAGGCCGTATGGT
* *
68711763 TACACACGCCCTTGTCCTGACCCCGTGTAACTCTCTGACTTGTAACCCATGAACAAATTGAGGTC
131 CACACACGCCCTTGTCCTGACCCCATGTAACTCTCTGACTTGTAACCCATGAACAAATTGAGGTC
*
68711828 GCACGGCCAAATCACACGCCCGTA
196 ACACGGCCAAATCACACGCCCGTA
* * * *
68711852 TTTTGGGAGTAGTCCAAGACTAAACCGAGAACTTCAGAAATTTTCACGACACTTAGAAAGTTTTT
1 TTTTGGGAGTAGTCCAAGACAAAACCGAGAACTTCAAAAATTTTCACGAAACTTAGAAAATTTTT
* * *
68711917 CCACTAAACAAAGGTCACATGT-TCGTGTGGATATGGGACATACCTGTATGGGCAGGCCGTATGG
66 CCACTAAACAAAGGTCACATGTCT-GCGTGGATATGGGACATACCCGGATGGGCAGGCCGTATGG
*
68711981 TCACACACGCCCTTGTCCTGACCCCATGTAACTCTCTGTCTTGTAACCCATGAACAAATTGAGGT
130 TCACACACGCCCTTGTCCTGACCCCATGTAACTCTCTGACTTGTAACCCATGAACAAATTGAGGT
* *
68712046 CACACGGCCAAATTACACTCCCGT
195 CACACGGCCAAATCACACGCCCGT
68712070 GTGCTAGGCT
Statistics
Matches: 195, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
218 1 0.01
219 194 0.99
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (219 bp):
TTTTGGGAGTAGTCCAAGACAAAACCGAGAACTTCAAAAATTTTCACGAAACTTAGAAAATTTTT
CCACTAAACAAAGGTCACATGTCTGCGTGGATATGGGACATACCCGGATGGGCAGGCCGTATGGT
CACACACGCCCTTGTCCTGACCCCATGTAACTCTCTGACTTGTAACCCATGAACAAATTGAGGTC
ACACGGCCAAATCACACGCCCGTA
Found at i:68714091 original size:28 final size:28
Alignment explanation
Indices: 68714028--68714178 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
68714018 ATATTAAGTC
*
68714028 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
68714055 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
68714083 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
*
68714111 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
68714139 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
68714168 CGCACACTTAG
1 CGCACACTTAG
68714179 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.19
28 75 0.66
29 16 0.14
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68718682 original size:48 final size:48
Alignment explanation
Indices: 68718611--68718882 Score: 250
Period size: 48 Copynumber: 5.7 Consensus size: 48
68718601 TATGGGTGCG
* *
68718611 AGTGTAAGACTATGTCTGGGACATGGCATCGGCCACATTATTAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATTAGAGCC
* *** * *
68718659 AGTGTAAGACTATGTTTGGGACATGGCATCAGTG-TTGA-TATGT-GTGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATC-G-GCCACATTAT-TAGAGCC
* * *
68718707 AGTGTAAAACCATGTTTGGGACATGGCGTCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATTAGAGCC
* * * * **** * *
68718755 AGTATAAGACCATGTCTAGGACATAGCATCGGTGTTGA-TATGT-GTGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGG-CCACATTAT-TAGAGCC
* *
68718803 AGTGTAAGACCATG-TCGGGACATGGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATTAGAGCC
68718850 AGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGC
68718883 ATTTTACCCT
Statistics
Matches: 172, Mismatches: 41, Indels: 22
0.73 0.17 0.09
Matches are distributed among these distances:
46 2 0.01
47 35 0.20
48 130 0.76
49 4 0.02
50 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATTAGAGCC
Found at i:68718763 original size:96 final size:96
Alignment explanation
Indices: 68718596--68718879 Score: 435
Period size: 96 Copynumber: 3.0 Consensus size: 96
68718586 ATGACATTTG
* * * * *
68718596 GTTGATATGGGTGCGAGTGTAAGACTATGTCTGGGACATGGCATCGGCCACATTATTAGAGCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGCCAG
*
68718661 TGTAAGACTATGTTTGGGACATGGCATCAGT
66 TGTAAGACCATGTTTGGGACATGGCATCAGT
* *
68718692 GTTGATATGTGTGCTAGTGTAAAACCATGTTTGGGACATGGCGTCGGCCACATTATGAGAGCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGCCAG
* * * * *
68718757 TATAAGACCATGTCTAGGACATAGCATCGGT
66 TGTAAGACCATGTTTGGGACATGGCATCAGT
*
68718788 GTTGATATGTGTGCTAGTGTAAGACCATG-TCGGGACATGGCATCGGCCACATTATGAGAGCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGCCAG
68718852 TGTAAGACCATGTTTGGGACATGGCATC
66 TGTAAGACCATGTTTGGGACATGGCATC
68718880 GGCATTTTAC
Statistics
Matches: 168, Mismatches: 20, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
95 57 0.34
96 111 0.66
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (96 bp):
GTTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGCCAG
TGTAAGACCATGTTTGGGACATGGCATCAGT
Found at i:68722926 original size:38 final size:38
Alignment explanation
Indices: 68722870--68722949 Score: 117
Period size: 38 Copynumber: 2.1 Consensus size: 38
68722860 GATGTGTATT
* *
68722870 CGGGTTAAATCCCGCAGG-CTCCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCT-AGTGCTGGTATTATATC
*
68722908 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
68722946 CGGG
1 CGGG
68722950 CCTTCGTGCC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
38 36 0.95
39 2 0.05
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.28
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:68723006 original size:43 final size:43
Alignment explanation
Indices: 68722921--68723040 Score: 163
Period size: 43 Copynumber: 2.8 Consensus size: 43
68722911 GATAAATCCC
* * * * *
68722921 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCATGACTA
*
68722962 GCAGGCTTAGTGCCGGTGATGTGTATTTGGGCCTTCATGACTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCATGACTA
*
68723005 GCAGGCTTAGTGCCAGTGATGTGTATTCGGGCCTTC
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTC
68723041 GTTGTAACAC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
41 15 0.22
42 2 0.03
43 52 0.75
ACGTcount: A:0.15, C:0.22, G:0.32, T:0.32
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCATGACTA
Found at i:68727428 original size:28 final size:28
Alignment explanation
Indices: 68727386--68727454 Score: 120
Period size: 28 Copynumber: 2.5 Consensus size: 28
68727376 GACTGATTTC
*
68727386 GCACACATAGCGCTCGATTGAAGAACTT
1 GCACACATAGTGCTCGATTGAAGAACTT
68727414 GCACACATAGTGCTCGATTGAAGAACTT
1 GCACACATAGTGCTCGATTGAAGAACTT
*
68727442 GCACACACAGTGC
1 GCACACATAGTGC
68727455 CTCATAATTC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.20
Consensus pattern (28 bp):
GCACACATAGTGCTCGATTGAAGAACTT
Found at i:68727588 original size:39 final size:40
Alignment explanation
Indices: 68727486--68727619 Score: 252
Period size: 40 Copynumber: 3.4 Consensus size: 40
68727476 CCTTTGAGGT
68727486 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
68727526 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
68727566 TTAG-CCAGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
68727605 TTAGCCCGGATATAT
1 TTAGCCCGGATATAT
68727620 AACTCTCAAT
Statistics
Matches: 91, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
39 38 0.42
40 53 0.58
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
Found at i:68727779 original size:41 final size:40
Alignment explanation
Indices: 68727732--68727813 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 40
68727722 TTCAGTTCCA
68727732 TAGCCACATACAAAGATCACATTCATAGTCGTAACACTCT
1 TAGCCACATACAAAGATCACATTCATAGTCGTAACACTCT
*
68727772 TNAGCCACATACAAAGATCACATTTATAGTCGTAACACTCT
1 T-AGCCACATACAAAGATCACATTCATAGTCGTAACACTCT
68727813 T
1 T
68727814 TCAAAATTGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
40 1 0.03
41 39 0.98
ACGTcount: A:0.37, C:0.26, G:0.10, T:0.27
Consensus pattern (40 bp):
TAGCCACATACAAAGATCACATTCATAGTCGTAACACTCT
Found at i:68731445 original size:38 final size:38
Alignment explanation
Indices: 68731394--68731474 Score: 117
Period size: 38 Copynumber: 2.1 Consensus size: 38
68731384 ATTTGATGTG
* * * *
68731394 TATTCGGGTTAAATCCCACAGGCTTCGTGCTGGTATTA
1 TATTCAGGATAAATCCCACAGGCCTAGTGCTGGTATTA
*
68731432 TATTCAGGATAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATTCAGGATAAATCCCACAGGCCTAGTGCTGGTATTA
68731470 TATTC
1 TATTC
68731475 GGGCCTTCGT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.33
Consensus pattern (38 bp):
TATTCAGGATAAATCCCACAGGCCTAGTGCTGGTATTA
Found at i:68731899 original size:45 final size:43
Alignment explanation
Indices: 68731825--68731951 Score: 116
Period size: 45 Copynumber: 2.9 Consensus size: 43
68731815 TTGACTTGAT
* * * ** *
68731825 TATTTGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATGC
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA-A-AC
*
68731870 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATACCGGT-AAAC
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAAC
* *
68731912 TAATATCGGGCC-TCGAGCCTAACAGGCGA-AATGCCGGTGA
1 T-AT-TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
68731952 TTTGAGAAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 8
0.79 0.11 0.09
Matches are distributed among these distances:
42 10 0.14
43 19 0.28
44 8 0.12
45 32 0.46
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (43 bp):
TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAAC
Found at i:68734236 original size:70 final size:70
Alignment explanation
Indices: 68734123--68734262 Score: 271
Period size: 70 Copynumber: 2.0 Consensus size: 70
68734113 CTAGATGGGT
*
68734123 CGTGTCGGCCCAATGGGCTTGTGGGCCCCACACGGATTAAATCTATAATTTGTGATAATTATTGA
1 CGTGTAGGCCCAATGGGCTTGTGGGCCCCACACGGATTAAATCTATAATTTGTGATAATTATTGA
68734188 ATTGG
66 ATTGG
68734193 CGTGTAGGCCCAATGGGCTTGTGGGCCCCACACGGATTAAATCTATAATTTGTGATAATTATTGA
1 CGTGTAGGCCCAATGGGCTTGTGGGCCCCACACGGATTAAATCTATAATTTGTGATAATTATTGA
68734258 ATTGG
66 ATTGG
68734263 GTTGTGTAGG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (70 bp):
CGTGTAGGCCCAATGGGCTTGTGGGCCCCACACGGATTAAATCTATAATTTGTGATAATTATTGA
ATTGG
Found at i:68734889 original size:96 final size:95
Alignment explanation
Indices: 68734681--68734951 Score: 407
Period size: 96 Copynumber: 2.8 Consensus size: 95
68734671 CGAACTATAC
*
68734681 AAGGCTTTCAGCCTTTCTACGATACTTATGGCTTATAGCCGTTCTGTTAACTGGCAGCATTGCTG
1 AAGGCTTTCAGCCTTTCTATGATACTTATGGCTTATAGCCGTTCTGTTAACTGGCAGCATTGCTG
**
68734746 CGATATTTACGGCCTGTAGTTGTCCTGTAT
66 CGATATTTACGGCCTGTAGTCATCCTGTAT
* * * * * *
68734776 AAGGCTTTTAGCCTTTCTATGATACTTACGGCTTATAGCTGTTCTATTAAATGGCAGCATTACTG
1 AAGGCTTTCAGCCTTTCTATGATACTTATGGCTTATAGCCGTTCTGTTAACTGGCAGCATTGCTG
*
68734841 CGATTATTTACGGCCTGTAGTCATTCTGTAT
66 CGA-TATTTACGGCCTGTAGTCATCCTGTAT
* **
68734872 AAGGCTTTCAGCCTTTCTGTGATACTTATGGCTTATAGCCGTTCTGTTAACTGGCAGTGTTGCTG
1 AAGGCTTTCAGCCTTTCTATGATACTTATGGCTTATAGCCGTTCTGTTAACTGGCAGCATTGCTG
*
68734937 CGATATTTACAGCCT
66 CGATATTTACGGCCT
68734952 TTAGCCGTCC
Statistics
Matches: 155, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
95 72 0.46
96 83 0.54
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (95 bp):
AAGGCTTTCAGCCTTTCTATGATACTTATGGCTTATAGCCGTTCTGTTAACTGGCAGCATTGCTG
CGATATTTACGGCCTGTAGTCATCCTGTAT
Found at i:68734984 original size:22 final size:22
Alignment explanation
Indices: 68734959--68735012 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
68734949 CCTTTAGCCG
*
68734959 TCCTGTCTACAACGTTGAGTCA
1 TCCTGTCTACAACGTTAAGTCA
* **
68734981 TCCTGTCAATGACGTTAAGTCA
1 TCCTGTCTACAACGTTAAGTCA
68735003 TCCTGTCTAC
1 TCCTGTCTAC
68735013 GGCGTAGAGC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (22 bp):
TCCTGTCTACAACGTTAAGTCA
Found at i:68738085 original size:205 final size:206
Alignment explanation
Indices: 68737719--68738127 Score: 793
Period size: 205 Copynumber: 2.0 Consensus size: 206
68737709 TACCCTTGTA
*
68737719 GGAAAAAATGACCGTAATACCCCTATATGATAGATTGACGATTATGCTCTTATGTTCCGTTTAAC
1 GGAAAAAATGACCATAATACCCCTATATGATAGATTGACGATTATGCTCTTATGTTCCGTTTAAC
68737784 TGATGTGCTTATGATTTACATATATGATTGTGCTGATTATGACTTTGCATTCATGTAATACTTAT
66 TGATGTGCTTATGATTTACATATATGATTGTGCTGATTATGACTTTGCATTCATGTAATACTTAT
68737849 GACATGACATATTGCATGGGGTTGGCTTATTATTGACGAAGTAAGTGTACGGCCAATACCCATTC
131 GACATGACATATTGCATGGGGTTGGCTTATTATTGACGAAGTAAGTGTACGGCCAATACCCATTC
68737914 TGTACAAGGAG
196 TGTACAAGGAG
*
68737925 GGAAAAAA-GATCATAATACCCCTATATGATAGATTGACGATTATGCTCTTATGTTCCGTTTAAC
1 GGAAAAAATGACCATAATACCCCTATATGATAGATTGACGATTATGCTCTTATGTTCCGTTTAAC
68737989 TGATGTGCTTATGATTTACATATATGATTGTGCTGATTATGACTTTGCATTCATGTAATACTTAT
66 TGATGTGCTTATGATTTACATATATGATTGTGCTGATTATGACTTTGCATTCATGTAATACTTAT
68738054 GACATGACATATTGCATGGGGTTGGCTTATTATTGACGAAGTAAGTGTACGGCCAATACCCATTC
131 GACATGACATATTGCATGGGGTTGGCTTATTATTGACGAAGTAAGTGTACGGCCAATACCCATTC
68738119 TGTACAAGG
196 TGTACAAGG
68738128 CTTTCAGCCT
Statistics
Matches: 201, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
205 193 0.96
206 8 0.04
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.35
Consensus pattern (206 bp):
GGAAAAAATGACCATAATACCCCTATATGATAGATTGACGATTATGCTCTTATGTTCCGTTTAAC
TGATGTGCTTATGATTTACATATATGATTGTGCTGATTATGACTTTGCATTCATGTAATACTTAT
GACATGACATATTGCATGGGGTTGGCTTATTATTGACGAAGTAAGTGTACGGCCAATACCCATTC
TGTACAAGGAG
Found at i:68738258 original size:27 final size:26
Alignment explanation
Indices: 68738228--68738314 Score: 67
Period size: 27 Copynumber: 3.4 Consensus size: 26
68738218 TAAGGCTTTC
*
68738228 AGCCTTTCTGTGATACTTACGGCCTAT
1 AGCCGTTCTGTGATACTTA-GGCCTAT
*
68738255 AGCCGTTCTGT-ATA---AGG-CTTT
1 AGCCGTTCTGTGATACTTAGGCCTAT
* * *
68738276 CAGCCTTTTTGTGATACTTATGGCTTAT
1 -AGCCGTTCTGTGATACTTA-GGCCTAT
68738304 AGCCGTTCTGT
1 AGCCGTTCTGT
68738315 TAACTGGCAG
Statistics
Matches: 45, Mismatches: 8, Indels: 14
0.67 0.12 0.21
Matches are distributed among these distances:
21 3 0.07
22 11 0.24
23 4 0.09
26 4 0.09
27 21 0.47
28 2 0.04
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.40
Consensus pattern (26 bp):
AGCCGTTCTGTGATACTTAGGCCTAT
Found at i:68738271 original size:49 final size:49
Alignment explanation
Indices: 68738213--68738314 Score: 177
Period size: 49 Copynumber: 2.1 Consensus size: 49
68738203 TGTAGTTGTC
68738213 CTGTATAAGGCTTTCAGCCTTTCTGTGATACTTACGGCCTATAGCCGTT
1 CTGTATAAGGCTTTCAGCCTTTCTGTGATACTTACGGCCTATAGCCGTT
* * *
68738262 CTGTATAAGGCTTTCAGCCTTTTTGTGATACTTATGGCTTATAGCCGTT
1 CTGTATAAGGCTTTCAGCCTTTCTGTGATACTTACGGCCTATAGCCGTT
68738311 CTGT
1 CTGT
68738315 TAACTGGCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.40
Consensus pattern (49 bp):
CTGTATAAGGCTTTCAGCCTTTCTGTGATACTTACGGCCTATAGCCGTT
Found at i:68738425 original size:22 final size:22
Alignment explanation
Indices: 68738355--68738426 Score: 99
Period size: 22 Copynumber: 3.3 Consensus size: 22
68738345 CCTTTAGCTG
*
68738355 TCCTATCTACGACGTTAAGTCA
1 TCCTGTCTACGACGTTAAGTCA
* *
68738377 TCCTTTCTACGACGTTAAGTCG
1 TCCTGTCTACGACGTTAAGTCA
* *
68738399 TCCTGTCTACGGCGTTGAGTCA
1 TCCTGTCTACGACGTTAAGTCA
68738421 TCCTGT
1 TCCTGT
68738427 TGACTTAGTG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.18, C:0.28, G:0.19, T:0.35
Consensus pattern (22 bp):
TCCTGTCTACGACGTTAAGTCA
Found at i:68741600 original size:202 final size:202
Alignment explanation
Indices: 68741253--68741653 Score: 667
Period size: 202 Copynumber: 2.0 Consensus size: 202
68741243 GTAGAATGAC
68741253 GATTATGCTCTTATGTTCCGTTTAACTGATGTGCTTATGATTTACATATATGATTGTGCTGAGTA
1 GATTATGCTCTTATGTTCCGTTTAACTGATGTGCTTATGATTTACATATATGATTGTGCTGAGTA
* * * *
68741318 TGACTTTGCATGCATGTAATATTTATGACATGACATGTTGCATGGGGTTGGGTTATTATTGACGG
66 TGACTTTGCATGCATGTAATACTTATGACATGACATATTGCATGGGGTTGGCTTATTATTGACGA
* * * * * *
68741383 AGGAAGTGGACGGCCAGTAGCCGTTCTGTATAAGGCTTTCAACCTTTCTACGATATTTATGGCTT
131 AGGAAGTGGACGGCCAATACCCATTCTGTACAAGGCTTTCAACCTTTCTACGATACTTATAGCTT
68741448 ATAGCCA
196 ATAGCCA
*
68741455 GATTATGCTCTTATGTTCCGTTTAACTGATGTGCTTATGATTTACATATATGATTGTGCTGATTA
1 GATTATGCTCTTATGTTCCGTTTAACTGATGTGCTTATGATTTACATATATGATTGTGCTGAGTA
*
68741520 TGACTTTGCATTCATGTAATACTTATGACATGACATATTGCATGGGGTTGGCTTATTATTGACGA
66 TGACTTTGCATGCATGTAATACTTATGACATGACATATTGCATGGGGTTGGCTTATTATTGACGA
* * *
68741585 AGTAAGTGTACGGCCAATACCCATTCTGTACAAGGCTTTCAGCCTTTCTACGATACTTATAGCTT
131 AGGAAGTGGACGGCCAATACCCATTCTGTACAAGGCTTTCAACCTTTCTACGATACTTATAGCTT
68741650 ATAG
196 ATAG
68741654 TCGTTCTGTT
Statistics
Matches: 184, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
202 184 1.00
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (202 bp):
GATTATGCTCTTATGTTCCGTTTAACTGATGTGCTTATGATTTACATATATGATTGTGCTGAGTA
TGACTTTGCATGCATGTAATACTTATGACATGACATATTGCATGGGGTTGGCTTATTATTGACGA
AGGAAGTGGACGGCCAATACCCATTCTGTACAAGGCTTTCAACCTTTCTACGATACTTATAGCTT
ATAGCCA
Found at i:68741728 original size:95 final size:94
Alignment explanation
Indices: 68741610--68741882 Score: 354
Period size: 92 Copynumber: 2.9 Consensus size: 94
68741600 AATACCCATT
* * *
68741610 CTGTACAAGGCTTTCAGCCTTTCTACGATACTTATAGCTTATAGTCGTTCTGTTAATTGGCAGCG
1 CTGTATAAGGCTTTCAGCCTTTCTATGATACTTATGGCTTATAG-CGTTCTGTTAATTGGCAGCG
** * *
68741675 TTGCTGCAATATTTTTGGCCTGTAGTTGTC
65 TTGCTGTGATATTTATGGCCTGTAGTCGTC
* * * *
68741705 CTGTATAAGGCTTTCAGCCTTTCTGTGATACTTACGGC---TAGCAGTTCTGTTAATAGGCAACG
1 CTGTATAAGGCTTTCAGCCTTTCTATGATACTTATGGCTTATAGC-GTTCTGTTAATTGGCAGCG
* * *
68741767 TTGCTGTGATATTTACGGCTTGTAGTCGTT
65 TTGCTGTGATATTTATGGCCTGTAGTCGTC
* *
68741797 CTGTATAAGGCTTTCAGCCTTTCTATGGTACTTATGGCTTATAGCCGTTCTGTTAACTGGCAGCG
1 CTGTATAAGGCTTTCAGCCTTTCTATGATACTTATGGCTTATAG-CGTTCTGTTAATTGGCAGCG
68741862 TTGCTGTGATATTTATGGCCT
65 TTGCTGTGATATTTATGGCCT
68741883 TTAACCGTCT
Statistics
Matches: 151, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
91 1 0.01
92 78 0.52
95 71 0.47
96 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (94 bp):
CTGTATAAGGCTTTCAGCCTTTCTATGATACTTATGGCTTATAGCGTTCTGTTAATTGGCAGCGT
TGCTGTGATATTTATGGCCTGTAGTCGTC
Found at i:68741913 original size:22 final size:22
Alignment explanation
Indices: 68741887--68741939 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
68741877 TGGCCTTTAA
* *
68741887 CCGTCTTGTCTATGACGTTGAG
1 CCGTCCTGTCTACGACGTTGAG
* *
68741909 TCGTCCTGTCTACGGCGTTGAG
1 CCGTCCTGTCTACGACGTTGAG
68741931 CCGTCCTGT
1 CCGTCCTGT
68741940 TGTCTTAGTG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.09, C:0.28, G:0.28, T:0.34
Consensus pattern (22 bp):
CCGTCCTGTCTACGACGTTGAG
Found at i:68750210 original size:19 final size:20
Alignment explanation
Indices: 68750186--68750223 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
68750176 GGTATCACCA
68750186 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
68750205 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
68750224 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:68750564 original size:93 final size:93
Alignment explanation
Indices: 68750452--68750622 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
68750442 GCCCCTAAGT
68750452 GAACTCGGACTCAACTCAACGAGCTCGTG-CATTCACATCCATAAGTGAACT-GAGACTCAACTC
1 GAACTCGGACTCAACTCAACGAGCTCG-GACATTCACATCCATAAGTGAACTCG-GACTCAACTC
*
68750515 AACGAGTTTGGATGCCTAGTTACATTTCAC
64 AACGAGTTCGGATGCCTAGTTACATTTCAC
* **
68750545 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
68750610 CGAGTTCGGATGC
66 CGAGTTCGGATGC
68750623 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
92 1 0.01
93 70 0.97
94 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:68750608 original size:46 final size:46
Alignment explanation
Indices: 68750447--68750619 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
68750437 AACCCGCCCC
* *
68750447 TAAGTGAACTCGGACTCAACTCAACGAGCTCGTG-CATTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG-GACATTTACATCCA
* * *
68750493 TAAGTGAACT-GAGACTCAACTCAACGAGTTTGGATGCCTAGTTACAT--T
1 TAAGTGAACTCG-GACTCAACTCAACGAGTTCGGA---C-ATTTACATCCA
* * *
68750541 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
68750586 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
68750620 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 13, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 4 0.04
46 57 0.55
47 26 0.25
48 3 0.03
49 1 0.01
50 6 0.06
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
Found at i:68758015 original size:39 final size:39
Alignment explanation
Indices: 68757961--68758207 Score: 361
Period size: 39 Copynumber: 6.3 Consensus size: 39
68757951 TAATGAAGAA
* *
68757961 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
*
68758000 TTATATCCGGGCTAAGCCCCGAAGGCGTTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
* *
68758039 TTATATCCGAGCTAAGCCCCGAAGTCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
*
68758078 TTATATCCGGGCTAAGCCCCGAAGGCGTTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
* *
68758117 TTATATCCGAGCTAAGCCCCGAAGTCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
* * * *
68758156 TTATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGCCCCGAAGGCATTCGTGCTGGTG
*
68758195 TTATATTCGGGCT
1 TTATATCCGGGCT
68758208 TAAAGTCCCG
Statistics
Matches: 188, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 178 0.95
40 10 0.05
ACGTcount: A:0.18, C:0.24, G:0.29, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
Found at i:68758233 original size:78 final size:78
Alignment explanation
Indices: 68757961--68758200 Score: 410
Period size: 78 Copynumber: 3.1 Consensus size: 78
68757951 TAATGAAGAA
* *
68757961 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGC
1 TTATATCCGAGCTAAGCCCCGAAGTCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGC
68758026 GTTCGTGCTGGTG
66 GTTCGTGCTGGTG
68758039 TTATATCCGAGCTAAGCCCCGAAGTCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGC
1 TTATATCCGAGCTAAGCCCCGAAGTCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGC
68758104 GTTCGTGCTGGTG
66 GTTCGTGCTGGTG
* *
68758117 TTATATCCGAGCTAAGCCCCGAAGTCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGTAGG
1 TTATATCCGAGCTAAGCCCCGAAGTCATTCGTGCTGGTGTTATATCCGGGCT-AAGCCCCGAAGG
* *
68758182 C-TTTGTGCTGGTA
65 CGTTCGTGCTGGTG
68758195 TTATAT
1 TTATAT
68758201 TCGGGCTTAA
Statistics
Matches: 155, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
78 144 0.93
79 11 0.07
ACGTcount: A:0.19, C:0.24, G:0.28, T:0.29
Consensus pattern (78 bp):
TTATATCCGAGCTAAGCCCCGAAGTCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGC
GTTCGTGCTGGTG
Found at i:68764729 original size:25 final size:28
Alignment explanation
Indices: 68764690--68764764 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 28
68764680 CTTAATAATC
*
68764690 AACCACGCACACTTAGTGCCA-C-TT-TA
1 AACC-CGCACACTTAGTGCCAGCATTCCA
68764716 AACCCGCACACTTAGTGCCATGCATTCCA
1 AACCCGCACACTTAGTGCCA-GCATTCCA
*
68764745 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
68764765 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
25 16 0.37
26 4 0.09
27 1 0.02
28 2 0.05
29 20 0.47
ACGTcount: A:0.28, C:0.37, G:0.15, T:0.20
Consensus pattern (28 bp):
AACCCGCACACTTAGTGCCAGCATTCCA
Found at i:68776151 original size:18 final size:18
Alignment explanation
Indices: 68776128--68776170 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
68776118 CAGTAATAGC
68776128 AAACAGTACAATAACAGT
1 AAACAGTACAATAACAGT
* * *
68776146 AAACAGTGCAGTAGCAGT
1 AAACAGTACAATAACAGT
68776164 -AACAGTA
1 AAACAGTA
68776171 AGCAGATCCT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.49, C:0.16, G:0.19, T:0.16
Consensus pattern (18 bp):
AAACAGTACAATAACAGT
Found at i:68776495 original size:26 final size:26
Alignment explanation
Indices: 68776466--68776543 Score: 86
Period size: 26 Copynumber: 3.0 Consensus size: 26
68776456 GGGGTAAAAC
*
68776466 AGTCATCTTACCACCTAAGGGCAAAT
1 AGTCATCTTACCACATAAGGGCAAAT
*
68776492 AGTCATTTTACCACATAAGGGCAAA-
1 AGTCATCTTACCACATAAGGGCAAAT
* * *
68776517 ACCGTCATTTTACCACATGAGAGCAAA
1 A--GTCATCTTACCACATAAGGGCAAA
68776544 ATATTCAGTT
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
25 1 0.02
26 23 0.50
27 22 0.48
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.23
Consensus pattern (26 bp):
AGTCATCTTACCACATAAGGGCAAAT
Found at i:68776555 original size:27 final size:27
Alignment explanation
Indices: 68776461--68776584 Score: 115
Period size: 27 Copynumber: 4.6 Consensus size: 27
68776451 ACGTAGGGGT
* * *
68776461 AAAACAGTCATCTTACCACCTAAGGGC
1 AAAACAGTCATTTTACCACATGAGGGC
* *
68776488 -AAATAGTCATTTTACCACATAAGGGC
1 AAAACAGTCATTTTACCACATGAGGGC
* *
68776514 AAAACCGTCATTTTACCACATGAGAGC
1 AAAACAGTCATTTTACCACATGAGGGC
* * * * * *
68776541 AAAATATTCAGTTTATCAAATGAGGGA
1 AAAACAGTCATTTTACCACATGAGGGC
*
68776568 AAAACATTCATTTTACC
1 AAAACAGTCATTTTACC
68776585 TTATAGGGGT
Statistics
Matches: 78, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
26 23 0.29
27 55 0.71
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.26
Consensus pattern (27 bp):
AAAACAGTCATTTTACCACATGAGGGC
Found at i:68776605 original size:27 final size:26
Alignment explanation
Indices: 68776575--68776689 Score: 99
Period size: 27 Copynumber: 4.3 Consensus size: 26
68776565 GGAAAAACAT
68776575 TCATTTTACCTTATAGGGGTATTATAG
1 TCATTTTACCTTATAGGGGTATT-TAG
*
68776602 TCATTTTATCC-TACT-GGGGTATTTCG
1 TCATTTTA-CCTTA-TAGGGGTATTTAG
* * * *
68776628 ATCATTTTACCTTGTGGGGGTGTTTCGG
1 -TCATTTTACCTTATAGGGGTATTT-AG
* *
68776656 TCATTTTACCCTATAGGGGTATTTCGG
1 TCATTTTACCTTATAGGGGTATTT-AG
68776683 TCATTTT
1 TCATTTT
68776690 TAAGTAAAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 12
0.79 0.09 0.13
Matches are distributed among these distances:
26 5 0.07
27 65 0.88
28 4 0.05
ACGTcount: A:0.17, C:0.16, G:0.22, T:0.45
Consensus pattern (26 bp):
TCATTTTACCTTATAGGGGTATTTAG
Found at i:68776633 original size:54 final size:54
Alignment explanation
Indices: 68776575--68776689 Score: 144
Period size: 54 Copynumber: 2.1 Consensus size: 54
68776565 GGAAAAACAT
*
68776575 TCATTTTACCTTATAGGGGTATTAT-AGTCATTTTATCCTACT-GGGGTATTTCGA
1 TCATTTTACCTTATAGGGGTATT-TCAGTCATTTTACCCTA-TAGGGGTATTTCGA
* * * * *
68776629 TCATTTTACCTTGTGGGGGTGTTTCGGTCATTTTACCCTATAGGGGTATTTCGG
1 TCATTTTACCTTATAGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTCGA
68776683 TCATTTT
1 TCATTTT
68776690 TAAGTAAAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
53 2 0.04
54 51 0.96
ACGTcount: A:0.17, C:0.16, G:0.22, T:0.45
Consensus pattern (54 bp):
TCATTTTACCTTATAGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTCGA
Found at i:68781072 original size:56 final size:55
Alignment explanation
Indices: 68780981--68781087 Score: 162
Period size: 56 Copynumber: 1.9 Consensus size: 55
68780971 AGTTCAGCAC
* *
68780981 TTTTAAGGTAAACAACACCCGATTAAAACCCTATTTTGATGCGATTGATAGCAGG
1 TTTTAAGGTAAACAACACCCGATTAAAACCCTATTTTGATGAGAATGATAGCAGG
*
68781036 NTTTTAAGGTAAACAACACCCG-TCTAAAACCTTATTTTGATGAGAATGATAG
1 -TTTTAAGGTAAACAACACCCGAT-TAAAACCCTATTTTGATGAGAATGATAG
68781088 TAGGAATGAG
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
55 1 0.02
56 46 0.98
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (55 bp):
TTTTAAGGTAAACAACACCCGATTAAAACCCTATTTTGATGAGAATGATAGCAGG
Found at i:68781543 original size:21 final size:21
Alignment explanation
Indices: 68781519--68781575 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
68781509 CACAGGAGTA
68781519 GAGCTTGAACACACGGGCATG
1 GAGCTTGAACACACGGGCATG
* *
68781540 GAGCTTGAACACATGGGCGTG
1 GAGCTTGAACACACGGGCATG
68781561 GAGCTTGAACACACG
1 GAGCTTGAACACACG
68781576 AAGCTAGACA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.28, C:0.23, G:0.33, T:0.16
Consensus pattern (21 bp):
GAGCTTGAACACACGGGCATG
Found at i:68788510 original size:26 final size:26
Alignment explanation
Indices: 68788477--68788529 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
68788467 AAAACATAAA
68788477 ATAAAACAACCATGCATTTTGTTCAT
1 ATAAAACAACCATGCATTTTGTTCAT
68788503 ATAAAACAACCATGCATTTTGTTCAT
1 ATAAAACAACCATGCATTTTGTTCAT
68788529 A
1 A
68788530 CTTTTGACTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.34
Consensus pattern (26 bp):
ATAAAACAACCATGCATTTTGTTCAT
Found at i:68791766 original size:29 final size:29
Alignment explanation
Indices: 68791703--68791770 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
68791693 TAATCAACCA
68791703 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
68791732 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
68791761 CGCACACTTA
1 CGCACACTTA
68791771 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:68796067 original size:48 final size:48
Alignment explanation
Indices: 68795996--68796092 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
68795986 GATTACAATG
*
68795996 TTACCACAAAGCCATCCCGTTGAACAATTCGGATTAATCCTCGATACT
1 TTACCACAAAGCCATCCCATTGAACAATTCGGATTAATCCTCGATACT
68796044 TTACCACAAAGCCATCCCATTGAACAATTCGGATTAATCCTCGATACT
1 TTACCACAAAGCCATCCCATTGAACAATTCGGATTAATCCTCGATACT
68796092 T
1 T
68796093 GATGGTTTCA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.32, C:0.29, G:0.11, T:0.28
Consensus pattern (48 bp):
TTACCACAAAGCCATCCCATTGAACAATTCGGATTAATCCTCGATACT
Found at i:68808395 original size:160 final size:160
Alignment explanation
Indices: 68808131--68808447 Score: 607
Period size: 160 Copynumber: 2.0 Consensus size: 160
68808121 AATTAATTAA
68808131 TCATAATTTATTAACCCAAATTAAATTGGATATAAATTAAAATTAATTATATTATGAAAATCATC
1 TCATAATTTATTAACCCAAATTAAATTGGATATAAATTAAAATTAATTATATTATGAAAATCATC
* *
68808196 TTAGGCTGAAATTTAGTTCGCCTCGATACTTCAACCTGCTTCTCGGTTTTGTGCTTCTAGCAGTG
66 TTAGGCTAAAATTTAGTTCGCCTCGATACTTCAACCTGCTTCTCGGTTTTGTGCTTCTAGAAGTG
68808261 TCTGCCGAGCCATTTTTCGACCTTTGTGCG
131 TCTGCCGAGCCATTTTTCGACCTTTGTGCG
*
68808291 TCATAATTTATTAACCCAAATTAAATTGGATATAAATTAAAATTAATTATATTATGAATATCATC
1 TCATAATTTATTAACCCAAATTAAATTGGATATAAATTAAAATTAATTATATTATGAAAATCATC
68808356 TTAGGCTAAAATTTAGTTCGCCTCGATACTTCAACCTGCTTCTCGGTTTTGTGCTTCTAGAAGTG
66 TTAGGCTAAAATTTAGTTCGCCTCGATACTTCAACCTGCTTCTCGGTTTTGTGCTTCTAGAAGTG
68808421 TCTGCCGAGCCATTTTTCGACCTTTGT
131 TCTGCCGAGCCATTTTTCGACCTTTGT
68808448 CCAAATTTGT
Statistics
Matches: 154, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
160 154 1.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (160 bp):
TCATAATTTATTAACCCAAATTAAATTGGATATAAATTAAAATTAATTATATTATGAAAATCATC
TTAGGCTAAAATTTAGTTCGCCTCGATACTTCAACCTGCTTCTCGGTTTTGTGCTTCTAGAAGTG
TCTGCCGAGCCATTTTTCGACCTTTGTGCG
Found at i:68808575 original size:21 final size:19
Alignment explanation
Indices: 68808532--68808576 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 19
68808522 TTAAGTGCAC
*
68808532 TTTAATTATTTTATAAAAA
1 TTTAATTATTTTACAAAAA
68808551 -TTAATTATTTTCAACAAAAA
1 TTTAATTATTTT--ACAAAAA
68808571 TTTAAT
1 TTTAAT
68808577 CGAATTCACA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 11 0.50
20 6 0.27
21 5 0.23
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (19 bp):
TTTAATTATTTTACAAAAA
Found at i:68809545 original size:90 final size:89
Alignment explanation
Indices: 68809439--68809616 Score: 338
Period size: 90 Copynumber: 2.0 Consensus size: 89
68809429 AAGAAACAAA
68809439 TGTTGAGGATTATACTAATTTTTGCTTAGTTTAATTATGATTTATTTATTTACCTTTTTAACCTC
1 TGTTGAGGATTATACTAATTTTTGCTTAGTTTAATTATGATTTATTTATTTACC-TTTTAACCTC
*
68809504 TTGTTTTTAACTTAAATTTCACTTT
65 TTATTTTTAACTTAAATTTCACTTT
68809529 TGTTGAGGATTATACTAATTTTTGCTTAGTTTAATTATGATTTATTTATTTACCTTTTAACCTCT
1 TGTTGAGGATTATACTAATTTTTGCTTAGTTTAATTATGATTTATTTATTTACCTTTTAACCTCT
68809594 TATTTTTAACTTAAATTTCACTT
66 TATTTTTAACTTAAATTTCACTT
68809617 AATTTATGTC
Statistics
Matches: 87, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
89 33 0.38
90 54 0.62
ACGTcount: A:0.25, C:0.11, G:0.08, T:0.55
Consensus pattern (89 bp):
TGTTGAGGATTATACTAATTTTTGCTTAGTTTAATTATGATTTATTTATTTACCTTTTAACCTCT
TATTTTTAACTTAAATTTCACTTT
Found at i:68810458 original size:16 final size:16
Alignment explanation
Indices: 68810437--68810470 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
68810427 AAATATATTT
68810437 CAGACCTGGATTCATG
1 CAGACCTGGATTCATG
68810453 CAGACCTGGATTCATG
1 CAGACCTGGATTCATG
68810469 CA
1 CA
68810471 TACTCATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (16 bp):
CAGACCTGGATTCATG
Found at i:68811437 original size:7 final size:7
Alignment explanation
Indices: 68811413--68811457 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
68811403 ACCTCATTTG
68811413 ATCCCTC
1 ATCCCTC
**
68811420 ATCATTC
1 ATCCCTC
*
68811427 ATCCCTT
1 ATCCCTC
68811434 ATCCCTC
1 ATCCCTC
68811441 ATCCCTC
1 ATCCCTC
*
68811448 ATCCATC
1 ATCCCTC
68811455 ATC
1 ATC
68811458 ATTCTCTCTT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.20, C:0.47, G:0.00, T:0.33
Consensus pattern (7 bp):
ATCCCTC
Found at i:68827197 original size:27 final size:27
Alignment explanation
Indices: 68827167--68827344 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
68827157 ATATTGAGTC
* * * *
68827167 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
68827194 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
68827221 CGCACACTTAGTGCTACATAGTCGAACT
1 CGCACACTTAGTGCTACATAGTC-AAAT
** * *
68827249 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
68827276 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
68827303 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68827330 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68827345 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:68827306 original size:82 final size:81
Alignment explanation
Indices: 68827188--68827343 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
68827178 TGCTATATAA
* * *
68827188 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCGAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTC-AAATCGCA
68827253 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
68827270 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
68827334 CACTTAGTGC
65 CACTTAGTGC
68827344 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:68837443 original size:40 final size:39
Alignment explanation
Indices: 68837359--68837543 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
68837349 TCGAATGATG
* * * *
68837359 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
68837399 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
68837439 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
68837478 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
68837519 -CCAGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
68837544 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68837495 original size:79 final size:81
Alignment explanation
Indices: 68837359--68837541 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
68837349 TCGAATGATG
* *
68837359 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
68837423 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
68837438 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
68837500 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* * *
68837518 ACCAGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
68837542 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:68837565 original size:79 final size:79
Alignment explanation
Indices: 68837412--68837576 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
68837402 GGACTAAGAT
* * **
68837412 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
68837477 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
68837491 CCGAAGGCATTTGTGCGAGTTACT-ATAACCAGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCAGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
68837554 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
68837570 CCGAAGG
1 CCGAAGG
68837577 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:68846263 original size:43 final size:43
Alignment explanation
Indices: 68846197--68846353 Score: 176
Period size: 43 Copynumber: 3.7 Consensus size: 43
68846187 AGCTCGTACA
* * *
68846197 ATGCCAACGTCCCAAATGTGGTCTTACAAGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACAAGTAATCAAATATCG
* * *
68846240 ATGCCACTGTCCCAGACAG-GGTCTTACATGAAATCAAATA-CG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACAAGTAATCAAATATCG
* * *
68846282 ATGCCAATGTCCCAAACGTGGTCTTACACGTAAATCATAA-GTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACAAGT-AATCA-AATATCG
*
68846326 ATGCCAATGTCCCAGACGTAGTCTTACA
1 ATGCCAATGTCCCAGACGTGGTCTTACA
68846354 CGATAACACA
Statistics
Matches: 96, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
41 1 0.01
42 27 0.28
43 37 0.39
44 31 0.32
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACAAGTAATCAAATATCG
Found at i:68846350 original size:86 final size:85
Alignment explanation
Indices: 68846197--68846353 Score: 219
Period size: 86 Copynumber: 1.8 Consensus size: 85
68846187 AGCTCGTACA
* * *
68846197 ATGCCAACGTCCCAAATGTGGTCTTACAAGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAAACGTGGTCTTACAAGTAATCAAATATCGATGCCAATGTCCCAGACAGAGT
68846262 CTTACATGAAATCAAATACG
66 CTTACATGAAATCAAATACG
* * *
68846282 ATGCCAATGTCCCAAACGTGGTCTTACACGTAAATCATAA-GTCGATGCCAATGTCCCAGAC-GT
1 ATGCCAACGTCCCAAACGTGGTCTTACAAGT-AATCA-AATATCGATGCCAATGTCCCAGACAG-
68846345 AGTCTTACA
63 AGTCTTACA
68846354 CGATAACACA
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
85 29 0.46
86 32 0.51
87 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (85 bp):
ATGCCAACGTCCCAAACGTGGTCTTACAAGTAATCAAATATCGATGCCAATGTCCCAGACAGAGT
CTTACATGAAATCAAATACG
Found at i:68848180 original size:92 final size:93
Alignment explanation
Indices: 68848080--68848264 Score: 302
Period size: 92 Copynumber: 2.0 Consensus size: 93
68848070 GAGCTGCCAG
*
68848080 GAAATAATAGAAAAAAGATGAATAAACAATTAAACCCAAAACAAAATCTCTAATCA-AACTTCAG
1 GAAATAATAGAAAAAAGATGAATAAACAATTAAACCCAAAACAAAATCTCTAATCAGAAC-TCAC
68848144 TCCTAAC-AAAGTAAATAAAGGCGAAGAA
65 TCCTAACAAAAGTAAATAAAGGCGAAGAA
* * *
68848172 GAAATAATAGAAAAAAGATGAATCAACAATTAAACCTAAAACAAAATCTCTAATCAGAGCTCACT
1 GAAATAATAGAAAAAAGATGAATAAACAATTAAACCCAAAACAAAATCTCTAATCAGAACTCACT
*
68848237 CCTAACAAAAGTAAATAAAGGCTAAGAA
66 CCTAACAAAAGTAAATAAAGGCGAAGAA
68848265 AAGGATTGCT
Statistics
Matches: 86, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
92 64 0.74
93 22 0.26
ACGTcount: A:0.56, C:0.16, G:0.11, T:0.18
Consensus pattern (93 bp):
GAAATAATAGAAAAAAGATGAATAAACAATTAAACCCAAAACAAAATCTCTAATCAGAACTCACT
CCTAACAAAAGTAAATAAAGGCGAAGAA
Found at i:68852803 original size:27 final size:27
Alignment explanation
Indices: 68852774--68852951 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68852764 ATATTGAGTC
* * **
68852774 CGCACACTTAGTGCTATATAATCAACC
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
68852801 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68852828 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
68852856 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
68852883 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
68852910 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68852937 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68852952 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:68852913 original size:82 final size:81
Alignment explanation
Indices: 68852801--68852950 Score: 230
Period size: 82 Copynumber: 1.8 Consensus size: 81
68852791 ATAATCAACC
* *
68852801 CGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTTA
68852866 GTGCCGCATGGTCAATT
65 GTGCCGCATGGTCAATT
* **
68852883 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
1 CGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
68852947 GTGC
65 GTGC
68852951 TGTACAATTT
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.26
82 46 0.74
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
CGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAG
TGCCGCATGGTCAATT
Found at i:68854830 original size:50 final size:50
Alignment explanation
Indices: 68854755--68854854 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
68854745 CGAGCACACC
68854755 CGTATCCTTGGTCCGTGTCCCTCACACGGCCTGGCACACGCTCCTGTGGT
1 CGTATCCTTGGTCCGTGTCCCTCACACGGCCTGGCACACGCTCCTGTGGT
*
68854805 CGTATCCTTGGTCCGTGTCCCTCACACGGCCTGGCACACGCTCGTGTGGT
1 CGTATCCTTGGTCCGTGTCCCTCACACGGCCTGGCACACGCTCCTGTGGT
68854855 AGCCCGTGTG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.10, C:0.37, G:0.27, T:0.26
Consensus pattern (50 bp):
CGTATCCTTGGTCCGTGTCCCTCACACGGCCTGGCACACGCTCCTGTGGT
Found at i:68859627 original size:49 final size:49
Alignment explanation
Indices: 68859555--68859827 Score: 361
Period size: 49 Copynumber: 5.5 Consensus size: 49
68859545 TGAGGTCACG
68859555 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
68859604 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
* * ** * * *
68859653 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAA--TTGGTCGCA
* * ** * *
68859704 TGTGTAATACTAAGTGCA-GCTACTACGTGTA-TCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-GGATAATT-GGTCGCA
* *
68859753 TGTGTAGTACTAAGTGCAGGCTACTACGTGTGCCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
68859802 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
68859828 TGCGTACCAG
Statistics
Matches: 195, Mismatches: 23, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
48 2 0.01
49 139 0.71
50 31 0.16
51 23 0.12
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
Found at i:68859820 original size:149 final size:149
Alignment explanation
Indices: 68859550--68859846 Score: 472
Period size: 149 Copynumber: 2.0 Consensus size: 149
68859540 TATTGTGAGG
* * *
68859550 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTACTAGATAATTGGTCACATGTGTAGTACT
*
68859615 AAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTAT
66 AAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTAT
*
68859680 GCGTACCCGATAACTTTGA
131 GCGTACCAGATAACTTTGA
** *
68859699 TCACGTGTGTAATACTAAGTGCA-GCTACTACGTGTA-TCAGATGGTTAGGTCACGTGTGTAGTA
1 TCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTACT-AGATAATT-GGTCACATGTGTAGTA
*
68859762 CTAAGTGCAGGCTACTACGTGTGCCGGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
64 CTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
*
68859827 ATGCGTACCAGATAGCTTTG
129 ATGCGTACCAGATAACTTTG
68859847 GCTACAATTG
Statistics
Matches: 136, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
147 1 0.01
148 18 0.13
149 117 0.86
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (149 bp):
TCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTACTAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTAT
GCGTACCAGATAACTTTGA
Found at i:68859873 original size:100 final size:98
Alignment explanation
Indices: 68859555--68859847 Score: 356
Period size: 100 Copynumber: 3.0 Consensus size: 98
68859545 TGAGGTCACG
*
68859555 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTG
** * *
68859620 CAGGCTACTACGTGTACTGGATA-ATTGGTCGCA
66 CAGGCTACTACGTGTACCAGATAGTTTGGTC-AA
* * * * * * *
68859653 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTTGATCACGTGTGTAATACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA--TTGGTCGCATGTGTAGTACTAAG
* * * *
68859718 TGCA-GCTACTACGTGTATCAGATGGTTAGGTCACG
64 TGCAGGCTACTACGTGTACCAGATAGTTTGGTCA-A
*
68859753 TGTGTAGTACTAAGTGCAGGCTACTACGTGTGCCGGATAATTGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTG
* *
68859818 CAGGCTACTATGCGTACCAGATAGCTTTGG
66 CAGGCTACTACGTGTACCAGATAG-TTTGG
68859848 CTACAATTGT
Statistics
Matches: 160, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
98 59 0.37
99 33 0.21
100 68 0.43
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (98 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTG
CAGGCTACTACGTGTACCAGATAGTTTGGTCAA
Found at i:68862645 original size:47 final size:47
Alignment explanation
Indices: 68862528--68862635 Score: 180
Period size: 47 Copynumber: 2.3 Consensus size: 47
68862518 CCCTTCGGGA
* *
68862528 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
*
68862575 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
*
68862622 CTTATCTCATATAT
1 CTTATCACATATAT
68862636 GCATGTTCAC
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.27, C:0.31, G:0.07, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:68862940 original size:49 final size:49
Alignment explanation
Indices: 68862828--68863052 Score: 418
Period size: 49 Copynumber: 4.6 Consensus size: 49
68862818 AGCCACATAC
*
68862828 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCG
1 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAG
*
68862877 GCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAG
1 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAG
68862924 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAG
1 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAG
68862973 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAG
1 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAG
68863022 GCCTTATCACATATATATACACTTTCACATT
1 GCCTTATCACATATATATACACTTTCACATT
68863053 TATTCAAATA
Statistics
Matches: 171, Mismatches: 3, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
47 45 0.26
49 126 0.74
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.35
Consensus pattern (49 bp):
GCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAG
Found at i:68864577 original size:56 final size:56
Alignment explanation
Indices: 68864510--68864630 Score: 233
Period size: 56 Copynumber: 2.2 Consensus size: 56
68864500 TATTAGTTTA
68864510 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
68864566 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
68864622 TTGCCCATG
1 TTGCCCATG
68864631 ATCCCTTGCC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.22, C:0.23, G:0.10, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:68869072 original size:49 final size:49
Alignment explanation
Indices: 68869002--68869226 Score: 236
Period size: 49 Copynumber: 4.5 Consensus size: 49
68868992 TGAGGCCATG
* *
68869002 TGTGTAGTACTAAGTGCAGGCTACTACGTGCACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACA
* * ** *
68869051 TGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CGCGATAACTTTTATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCG-GATAA--TTGGTCACA
* * * * ** *
68869102 TGTGTAGTACTAAGTGCAAGCTACTACTTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACA
* * *
68869152 CGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACA
* *
68869201 TGTGTAGTATTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
68869227 TGCGTACCAG
Statistics
Matches: 142, Mismatches: 29, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
48 2 0.01
49 64 0.45
50 39 0.27
51 36 0.25
52 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACA
Done.