genome.fa.s25.2.7.7.80.10.50.1000.203.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  203  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68869001--68869184	100	1.8	100	84	1	251	25	19	26	29	1.98
68874980--68875921	40	23.6	40	97	0	1696	22	20	27	29	1.99
68883780--68884202	40	10.6	40	96	1	681	22	21	27	28	1.99
68888659--68889061	48	8.5	48	74	10	262	27	18	29	24	1.98
68888659--68888873	46	4.6	45	77	12	179	27	20	28	24	1.99
68890171--68890209	21	1.9	21	94	5	71	10	35	30	23	1.88
68895714--68895738	13	1.9	13	100	0	50	36	16	16	32	1.90
68896554--68896771	46	4.7	49	81	12	205	25	18	30	25	1.98
68896591--68896771	95	1.9	96	87	8	271	25	17	30	26	1.97
68899742--68899770	12	2.3	13	94	5	51	0	10	0	89	0.48
68900624--68900656	17	1.9	17	100	0	66	54	12	9	24	1.66
68903394--68903521	28	4.5	28	88	2	175	32	26	12	28	1.93
68903394--68903521	29	4.5	28	86	4	159	32	26	12	28	1.93
68903393--68903521	57	2.3	57	86	5	181	32	27	12	27	1.93
68908176--68908232	18	2.9	21	72	20	59	21	19	29	29	1.97
68908188--68908222	18	1.9	18	100	0	70	17	17	34	31	1.93
68911810--68911847	16	2.4	16	100	0	76	65	10	0	23	1.23
68916317--68916579	40	6.6	40	87	3	309	26	28	20	23	1.99
68924267--68924529	40	6.6	40	88	3	316	26	27	20	24	1.99
68924461--68924538	40	1.9	41	82	10	97	26	28	21	23	1.99
68927827--68927899	24	3.0	24	64	7	58	24	8	21	45	1.79
68933168--68933219	19	2.8	18	82	11	61	67	1	7	23	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68933554--68933591	19	1.9	19	89	5	58	47	2	0	50	1.15
68933576--68933631	18	3.1	18	73	14	51	30	3	0	66	1.09
68933690--68933810	63	1.9	64	79	5	138	39	9	19	30	1.85
68936968--68937005	16	2.2	18	86	9	53	47	2	0	50	1.15
68942794--68942904	27	4.1	27	87	4	145	36	21	22	18	1.95
68943008--68943071	26	2.4	27	89	2	94	29	10	23	35	1.89
68945305--68945338	17	2.0	17	100	0	68	52	5	11	29	1.61
68945799--68945988	96	2.0	96	89	2	292	35	11	18	33	1.87
68953336--68953503	28	6.0	28	78	18	97	31	26	12	29	1.93
68953350--68953503	27	5.6	27	90	4	227	30	28	12	27	1.94
68953350--68953503	55	2.8	55	93	2	254	30	28	12	27	1.94
68963155--68963349	68	2.8	68	90	3	284	22	28	15	33	1.95
68963192--68963375	68	2.7	67	89	5	237	23	27	14	34	1.94
68965290--68965342	13	3.6	14	82	12	54	5	16	7	69	1.31
68967061--68967110	26	1.9	25	84	15	66	42	14	28	16	1.86
68969641--68969706	32	2.1	32	100	0	132	30	25	12	31	1.92
68972496--68972543	23	2.1	23	92	0	78	20	31	20	27	1.98
68978465--68978497	13	2.8	12	86	13	50	75	0	0	24	0.80
68978457--68978497	15	2.9	15	79	20	52	73	0	0	26	0.84
68979995--68980205	40	5.3	40	81	5	223	31	12	28	26	1.93
68979995--68980204	79	2.6	79	79	5	226	31	12	28	26	1.93
68993166--68993343	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68993187--68993342	82	1.9	81	88	3	233	29	28	15	26	1.96
68995700--68995833	71	1.9	71	92	0	223	30	20	20	29	1.97
68996794--68996861	34	2.0	34	100	0	136	32	14	17	35	1.91
69001183--69001360	27	6.6	27	84	3	205	29	28	15	26	1.96
69001204--69001359	82	1.9	81	88	3	233	29	28	15	26	1.96
69011324--69011349	11	2.4	11	100	0	52	38	19	7	34	1.80
69028373--69028427	28	1.9	29	81	3	67	45	1	20	32	1.61
69029944--69030009	29	2.3	29	91	0	105	30	12	28	28	1.93
69038063--69038227	68	2.4	68	79	10	174	22	27	15	33	1.95
69043071--69043183	29	4.0	28	78	6	111	29	30	15	24	1.95
69044666--69044698	16	2.1	16	94	0	57	18	3	27	51	1.60
69050408--69050522	29	4.0	29	77	6	110	28	29	14	26	1.95
69053236--69053355	45	2.7	45	80	0	141	34	25	14	26	1.94
69056737--69056797	30	2.0	30	83	0	77	31	22	8	37	1.84
69059743--69059815	15	4.9	15	86	0	101	56	16	15	12	1.68
69061625--69061788	76	2.2	76	90	0	265	28	29	18	24	1.98
69063704--69063794	45	2.0	45	91	0	146	36	29	9	24	1.88
69064008--69064046	14	2.6	16	88	8	55	38	20	2	38	1.66
69066018--69066153	42	3.2	42	82	11	152	26	17	24	31	1.97
69066004--69066153	43	3.5	43	77	15	157	26	16	24	33	1.95
69068454--69068579	46	2.7	46	92	0	207	20	18	27	33	1.96
69068804--69068841	19	2.0	20	85	15	53	36	0	23	39	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69070448--69070479	16	2.0	16	93	0	55	18	9	37	34	1.83
69076103--69076956	28	30.5	28	99	0	1674	35	28	11	25	1.90
69079086--69080011	40	23.1	40	98	0	1719	27	27	20	25	1.99
69080153--69080229	38	2.0	38	97	0	145	44	22	2	31	1.66
69080525--69080662	69	2.0	69	92	0	231	28	29	24	17	1.97
69081963--69082041	37	2.1	37	90	0	122	25	31	18	24	1.98
69082160--69082934	47	16.4	47	96	1	1388	28	31	8	32	1.86
69084039--69084157	59	2.0	59	98	0	229	42	16	15	25	1.88
69086784--69087055	40	6.8	40	90	0	409	26	27	21	24	1.99
69088431--69088827	47	8.4	47	95	1	695	29	30	8	31	1.87
69091023--69091058	16	2.2	16	95	0	63	36	22	0	41	1.54
69096761--69096804	19	2.3	19	100	0	88	25	29	13	31	1.94
69100619--69100645	5	5.4	5	100	0	54	22	0	0	77	0.76
69103472--69103504	18	1.9	17	88	11	50	30	15	12	42	1.83
69104866--69104927	27	2.3	27	91	5	99	29	12	16	41	1.85
69108707--69108768	27	2.3	27	97	0	115	29	16	16	38	1.90
69108707--69108793	27	3.2	27	88	3	104	27	12	18	41	1.87
69109017--69109063	19	2.5	19	80	19	55	29	42	17	10	1.82
69114460--69114484	8	3.1	8	100	0	50	88	0	0	12	0.53
69120243--69120280	14	2.9	13	81	11	51	57	10	13	18	1.63
69123708--69123753	20	2.3	20	84	0	56	34	13	4	47	1.62
69125060--69125247	101	1.9	101	86	0	268	31	23	18	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69127748--69127793	24	2.0	23	83	12	58	39	8	19	32	1.82
69130823--69131256	47	9.2	47	93	0	715	28	30	7	32	1.85
69139412--69139443	16	2.0	16	93	0	55	46	0	18	34	1.49
69142013--69142235	40	5.6	39	81	5	207	27	27	20	23	1.99
69142013--69142235	120	1.9	119	83	4	288	27	27	20	23	1.99
69144594--69144624	14	2.2	14	100	0	62	58	0	22	19	1.40
69145822--69145865	15	2.9	16	86	6	56	15	20	11	52	1.74
69148805--69149206	46	8.7	46	98	0	743	21	21	28	28	1.98
69150667--69150850	40	4.6	40	94	0	296	26	25	24	23	2.00
69150631--69150850	80	2.8	80	88	2	302	26	25	24	24	2.00
69160628--69160782	74	2.1	72	96	2	283	48	3	14	32	1.62
69162422--69162475	27	2.0	27	88	0	81	22	24	33	20	1.97
69167434--69167547	46	2.5	46	91	0	174	21	19	28	30	1.98
69169699--69169911	40	5.3	40	91	0	338	27	21	26	24	1.99
69180869--69180928	27	2.3	26	85	2	75	35	20	23	21	1.96
69180969--69181020	27	2.0	26	84	3	68	34	21	26	17	1.95
69185620--69185759	40	3.5	40	94	0	237	31	29	17	21	1.96
69198427--69198609	40	4.6	39	84	4	197	27	27	20	24	1.99
69206097--69206139	18	2.4	18	96	0	77	48	16	2	32	1.58
69209830--69210086	128	2.0	128	96	0	469	37	21	5	34	1.78
69211967--69212056	10	9.0	10	72	11	51	63	2	4	30	1.26
69212016--69212056	20	2.1	20	86	4	57	65	2	4	26	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69212683--69212708	6	4.3	6	100	0	52	19	0	0	80	0.71
69212768--69212834	9	7.0	9	77	13	55	41	0	5	52	1.26
69217808--69217936	44	2.9	44	89	0	204	33	27	17	20	1.96
69220347--69220525	42	4.2	42	75	2	153	30	17	24	27	1.97
69220370--69220525	84	1.9	84	84	2	215	31	17	23	26	1.97
69226004--69226042	18	2.2	18	95	0	69	25	12	28	33	1.93
69232098--69232140	22	2.0	22	85	0	59	46	20	18	13	1.83
69232345--69232409	22	3.0	22	73	13	62	33	20	23	23	1.97
69232551--69232669	41	2.9	41	92	0	193	25	30	22	21	1.99
69232931--69233306	27	14.0	27	81	6	271	31	9	18	40	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297