Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 206 of 297
Found at i:70026898 original size:14 final size:15
Alignment explanation
Indices: 70026879--70026907 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
70026869 GTAAATACTT
70026879 CTATTTT-GAGAAGA
1 CTATTTTGGAGAAGA
70026893 CTATTTTGGAGAAGA
1 CTATTTTGGAGAAGA
70026908 AAATACTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.34
Consensus pattern (15 bp):
CTATTTTGGAGAAGA
Found at i:70030538 original size:33 final size:33
Alignment explanation
Indices: 70030500--70030563 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
70030490 GACTGAGTGG
* *
70030500 GAGTGTTTGGTTGTTGGACAGGAGCTAGAATGT
1 GAGTGTTTGGTTGCTGGAAAGGAGCTAGAATGT
70030533 GAGTGTTTGGTTGCTGGAAAGGAGCTAGAAT
1 GAGTGTTTGGTTGCTGGAAAGGAGCTAGAAT
70030564 CTCAAGAAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.23, C:0.06, G:0.39, T:0.31
Consensus pattern (33 bp):
GAGTGTTTGGTTGCTGGAAAGGAGCTAGAATGT
Found at i:70032903 original size:19 final size:19
Alignment explanation
Indices: 70032879--70032919 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
70032869 CTTCCCTTCA
70032879 AGAATGTACGAACCAGTTG
1 AGAATGTACGAACCAGTTG
70032898 AGAATGTACGAACCAGTTG
1 AGAATGTACGAACCAGTTG
70032917 AGA
1 AGA
70032920 CTACTTCACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.39, C:0.15, G:0.27, T:0.20
Consensus pattern (19 bp):
AGAATGTACGAACCAGTTG
Found at i:70039626 original size:23 final size:23
Alignment explanation
Indices: 70039591--70039665 Score: 80
Period size: 23 Copynumber: 3.3 Consensus size: 23
70039581 AATTACTAAT
* * * *
70039591 TTGCACTGAAGTGTCACTTTCAA
1 TTGCACCGGAGTGCCACTGTCAA
* *
70039614 TTGCACCGGAGTGCCTCTGTCAG
1 TTGCACCGGAGTGCCACTGTCAA
70039637 TTGCACCGGAGTGCCA-TGATCAA
1 TTGCACCGGAGTGCCACTG-TCAA
70039660 TTGCAC
1 TTGCAC
70039666 AGAAATTTCA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
22 2 0.05
23 41 0.95
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.28
Consensus pattern (23 bp):
TTGCACCGGAGTGCCACTGTCAA
Found at i:70045127 original size:26 final size:26
Alignment explanation
Indices: 70045091--70045144 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
70045081 CTAGTTCTAG
* *
70045091 AATGATTCAAAAGTCTGCTGAGTCAA
1 AATGATTCAAAAGTCTACTAAGTCAA
70045117 AATGATTCAAAAGTCTACTAAGTCAA
1 AATGATTCAAAAGTCTACTAAGTCAA
70045143 AA
1 AA
70045145 GCTGGATAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (26 bp):
AATGATTCAAAAGTCTACTAAGTCAA
Found at i:70045568 original size:27 final size:28
Alignment explanation
Indices: 70045508--70045573 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 28
70045498 TGGTTTTCTT
* *
70045508 ACACAAGTTGTGATACTTGAATTTGCTC
1 ACACAAGCTGTGATACTTGAAGTTGCTC
*
70045536 ACACAAGCTGTGATATTTG-AGTTGCTC
1 ACACAAGCTGTGATACTTGAAGTTGCTC
70045563 ACACAAGCTGT
1 ACACAAGCTGT
70045574 AGGTTAGGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
27 18 0.51
28 17 0.49
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (28 bp):
ACACAAGCTGTGATACTTGAAGTTGCTC
Found at i:70046729 original size:10 final size:10
Alignment explanation
Indices: 70046704--70046743 Score: 64
Period size: 10 Copynumber: 4.1 Consensus size: 10
70046694 TAATGAAGAA
*
70046704 AACACTTGTT
1 AACACTTTTT
70046714 -ACACTTTTT
1 AACACTTTTT
70046723 AACACTTTTT
1 AACACTTTTT
70046733 AACACTTTTT
1 AACACTTTTT
70046743 A
1 A
70046744 CCTTATTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
9 8 0.29
10 20 0.71
ACGTcount: A:0.30, C:0.20, G:0.03, T:0.47
Consensus pattern (10 bp):
AACACTTTTT
Found at i:70048890 original size:20 final size:21
Alignment explanation
Indices: 70048865--70048908 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
70048855 TAGTTCAACG
*
70048865 GGTAAGAAAAGG-AATGGCAT
1 GGTAAGAAAAGGAAATGGAAT
*
70048885 GGTAAGTAAAGGAAATGGAAT
1 GGTAAGAAAAGGAAATGGAAT
70048906 GGT
1 GGT
70048909 TCATGATCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.43, C:0.02, G:0.36, T:0.18
Consensus pattern (21 bp):
GGTAAGAAAAGGAAATGGAAT
Found at i:70057518 original size:23 final size:23
Alignment explanation
Indices: 70057487--70057535 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
70057477 AACGTAAGTA
*
70057487 AAAATGATGCATTATTTATATAC
1 AAAACGATGCATTATTTATATAC
70057510 AAAACGATGCATTATTTATATAC
1 AAAACGATGCATTATTTATATAC
70057533 AAA
1 AAA
70057536 CTTATCTCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.47, C:0.10, G:0.08, T:0.35
Consensus pattern (23 bp):
AAAACGATGCATTATTTATATAC
Found at i:70061276 original size:40 final size:40
Alignment explanation
Indices: 70061221--70061361 Score: 185
Period size: 40 Copynumber: 3.5 Consensus size: 40
70061211 TATTCGGATG
*
70061221 ATATCCGGGCTAAGTCCCGGAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
70061261 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
70061301 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
70061341 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
70061362 ATACTTGGGT
Statistics
Matches: 86, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
39 13 0.15
40 73 0.85
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:70064565 original size:43 final size:42
Alignment explanation
Indices: 70064443--70064565 Score: 122
Period size: 43 Copynumber: 2.9 Consensus size: 42
70064433 TACCGTACCA
* *** **
70064443 ATGCCATATCCCAGATATGGTCTTACATTTAATCTTGTATCG
1 ATGCCATATACCAGATATGGTCTTACACGAAATCTCATATCG
* *
70064485 ATGCCAATAGACCA-ACTATGGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATACCAGA-TATGGTCTTACACGAAATCTCATATCG
* *
70064528 ATGCCATATTCCAGATATAGTCTTACACGCAAATCTCA
1 ATGCCATATACCAGATATGGTCTTACACG-AAATCTCA
70064566 GTGACCCTAA
Statistics
Matches: 65, Mismatches: 12, Indels: 7
0.77 0.14 0.08
Matches are distributed among these distances:
42 25 0.38
43 40 0.62
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (42 bp):
ATGCCATATACCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:70071943 original size:43 final size:43
Alignment explanation
Indices: 70071806--70071975 Score: 197
Period size: 43 Copynumber: 4.0 Consensus size: 43
70071796 ACATAGGATC
* *
70071806 CGATATGTG-TTATCGTGTAAAACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTA-CGTGTAAGACCACGTCTGGGACGTTGGCAT
* * *
70071849 CGACT-TATGATTTGCGTGTAAGACCACGTCTGGGACGTTGGGAT
1 CGA-TATTTGA-TTACGTGTAAGACCACGTCTGGGACGTTGGCAT
*
70071893 CG-TATTTGATTCCGTGTAAGACC-CTGTCTGGGACAG-TGGCAT
1 CGATATTTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCAT
*
70071935 CGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGC
1 CGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGC
70071976 GTTTATGAGT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
41 1 0.01
42 31 0.28
43 43 0.39
44 32 0.29
45 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (43 bp):
CGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:70077366 original size:25 final size:25
Alignment explanation
Indices: 70077338--70077419 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
70077328 TGTTGGTATG
70077338 TTTAATTTAGTTAATATGGCTTAAA
1 TTTAATTTAGTTAATATGGCTTAAA
* ** * * **
70077363 TTTAATTCA-TGTAAGGTTGATTGCA
1 TTTAATTTAGT-TAATATGGCTTAAA
70077388 TTTAATTTAGTTAATATGGCTTAAA
1 TTTAATTTAGTTAATATGGCTTAAA
70077413 TTTAATT
1 TTTAATT
70077420 CATGTTAGGT
Statistics
Matches: 41, Mismatches: 14, Indels: 4
0.69 0.24 0.07
Matches are distributed among these distances:
24 1 0.02
25 39 0.95
26 1 0.02
ACGTcount: A:0.33, C:0.05, G:0.13, T:0.49
Consensus pattern (25 bp):
TTTAATTTAGTTAATATGGCTTAAA
Found at i:70077412 original size:50 final size:50
Alignment explanation
Indices: 70077338--70077441 Score: 199
Period size: 50 Copynumber: 2.1 Consensus size: 50
70077328 TGTTGGTATG
70077338 TTTAATTTAGTTAATATGGCTTAAATTTAATTCATGTAAGGTTGATTGCA
1 TTTAATTTAGTTAATATGGCTTAAATTTAATTCATGTAAGGTTGATTGCA
*
70077388 TTTAATTTAGTTAATATGGCTTAAATTTAATTCATGTTAGGTTGATTGCA
1 TTTAATTTAGTTAATATGGCTTAAATTTAATTCATGTAAGGTTGATTGCA
70077438 TTTA
1 TTTA
70077442 GTCTACTTAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.31, C:0.06, G:0.15, T:0.48
Consensus pattern (50 bp):
TTTAATTTAGTTAATATGGCTTAAATTTAATTCATGTAAGGTTGATTGCA
Found at i:70077440 original size:25 final size:25
Alignment explanation
Indices: 70077362--70077441 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
70077352 TATGGCTTAA
*
70077362 ATTTAATTCATGTAAGGTTGATTGC
1 ATTTAATTCATGTTAGGTTGATTGC
* * * **
70077387 ATTTAATTTA-GTTA-ATATGGCTTAA
1 ATTTAATTCATGTTAGGT-T-GATTGC
70077412 ATTTAATTCATGTTAGGTTGATTGC
1 ATTTAATTCATGTTAGGTTGATTGC
70077437 ATTTA
1 ATTTA
70077442 GTCTACTTAA
Statistics
Matches: 40, Mismatches: 11, Indels: 8
0.68 0.19 0.14
Matches are distributed among these distances:
23 1 0.03
24 4 0.10
25 29 0.73
26 5 0.12
27 1 0.03
ACGTcount: A:0.30, C:0.06, G:0.16, T:0.47
Consensus pattern (25 bp):
ATTTAATTCATGTTAGGTTGATTGC
Found at i:70084052 original size:51 final size:51
Alignment explanation
Indices: 70083971--70084114 Score: 252
Period size: 51 Copynumber: 2.8 Consensus size: 51
70083961 GTGGCCTTCA
*
70083971 CCTTCACATAGTACCTCACTTGTGTCCAAAGCTATTATATTCACAAAGTGG
1 CCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAAGTGG
*
70084022 CCTTCACATAGTACCACACTTGTGTACAAAGCTATTATATTCACAAAGTGG
1 CCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAAGTGG
* *
70084073 CCTTCACATAGTACCACATTTGTGTCCAAAGCTATTTTATTC
1 CCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
70084115 CTAAGGTTCA
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 88 1.00
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (51 bp):
CCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAAGTGG
Found at i:70084175 original size:28 final size:28
Alignment explanation
Indices: 70084138--70084232 Score: 137
Period size: 28 Copynumber: 3.5 Consensus size: 28
70084128 GGGAAATTTC
70084138 TCACTTAGCACAATGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
70084166 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
70084194 TCACTTAG----ATGCCATGGTA-TTATT
1 TCACTTAGCACAATGCCATGG-ACTTATT
70084218 TCACTTAGCACAATG
1 TCACTTAGCACAATG
70084233 TCATATCCTA
Statistics
Matches: 60, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
24 21 0.35
25 1 0.02
28 38 0.63
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (28 bp):
TCACTTAGCACAATGCCATGGACTTATT
Found at i:70085676 original size:46 final size:46
Alignment explanation
Indices: 70085623--70085794 Score: 170
Period size: 47 Copynumber: 3.7 Consensus size: 46
70085613 TACAAGTGCT
* * *
70085623 AGTGTAAGA-TATGTCTGGGACATGCATCAGTCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATC-GACTCAAGATGTAAGCC
* * * *
70085669 AGTGTAAGA-CATATCGGGGACATGCATCGGCTACAAGATG-ATAGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGACT-CAAGATGTA-AGCC
* * * *
70085715 AGTGTAAGACCATGTCAGGGACACGGCATCGACTTAAGATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACA-TGCATCGACTCAAGATGTAAGCC
*
70085762 AGTGTAAGACCATGTCTGGTACATGGCATCGAC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGAC
70085795 ACCTTACCCA
Statistics
Matches: 104, Mismatches: 16, Indels: 11
0.79 0.12 0.08
Matches are distributed among these distances:
45 4 0.04
46 43 0.41
47 49 0.47
48 8 0.08
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGACTCAAGATGTAAGCC
Found at i:70085786 original size:140 final size:141
Alignment explanation
Indices: 70085529--70085791 Score: 309
Period size: 140 Copynumber: 1.9 Consensus size: 141
70085519 TGTGTGAGCT
* * ** * *
70085529 AGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGAGAGCCAGTATAATACCATGTCCGG
1 AGTGTAAGACATATCGAGGACATGCATCGGCCACAAGATGAGAGCCAGTATAAGACCATGTCAGG
* * * *
70085594 GACATGGCATCGGCATTGATACAAGTGCTAGTGTAAGATATGTCTGGGACAT-GCATCAGTCTCG
66 GACACGGCATCGACATTGATACAAGTGCCAGTGTAAGACATGTCTGGGACATGGCATCAGTCTCG
70085658 AGATGTAAGCC
131 AGATGTAAGCC
* * * * *
70085669 AGTGTAAGACATATCGGGGACATGCATCGGCTACAAGATGATAGTCAGTGTAAGACCATGTCAGG
1 AGTGTAAGACATATCGAGGACATGCATCGGCCACAAGATGAGAGCCAGTATAAGACCATGTCAGG
* * *
70085734 GACACGGCATCGAC-TT-A-AGATGTGAGCCAGTGTAAGACCATGTCTGGTACATGGCATC
66 GACACGGCATCGACATTGATACAAGT--GCCAGTGTAAGA-CATGTCTGGGACATGGCATC
70085792 GACACCTTAC
Statistics
Matches: 101, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
137 4 0.04
138 1 0.01
139 13 0.13
140 78 0.77
141 5 0.05
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (141 bp):
AGTGTAAGACATATCGAGGACATGCATCGGCCACAAGATGAGAGCCAGTATAAGACCATGTCAGG
GACACGGCATCGACATTGATACAAGTGCCAGTGTAAGACATGTCTGGGACATGGCATCAGTCTCG
AGATGTAAGCC
Found at i:70091914 original size:79 final size:82
Alignment explanation
Indices: 70091803--70091987 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
70091793 GCTACTCGTT
* *
70091803 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
70091866 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
70091883 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
70091946 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
70091963 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70091988 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:70091987 original size:40 final size:40
Alignment explanation
Indices: 70091784--70091987 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
70091774 CGGAATTTAA
** *
70091784 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
70091824 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
70091864 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
70091903 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
70091943 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
70091983 CCGGA
1 CCGGA
70091988 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:70114992 original size:20 final size:21
Alignment explanation
Indices: 70114963--70115010 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
70114953 AAATTTGTGC
* *
70114963 AATTTACTACCATAAA-TTCT
1 AATTTTCTACAATAAATTTCT
*
70114983 CATTTTCTACAATAAATTTCT
1 AATTTTCTACAATAAATTTCT
70115004 AATTTTC
1 AATTTTC
70115011 AGCATACAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 13 0.57
21 10 0.43
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.46
Consensus pattern (21 bp):
AATTTTCTACAATAAATTTCT
Found at i:70115921 original size:39 final size:40
Alignment explanation
Indices: 70115878--70115961 Score: 116
Period size: 39 Copynumber: 2.1 Consensus size: 40
70115868 CGTTTGAATG
*
70115878 AAAAACGCCACTAAAGAACGAGCATTAGCGACGC-TTTTT
1 AAAAACGCCACTAAAGAACGAGAATTAGCGACGCTTTTTT
* ** *
70115917 AAAAACGCTACTAAAGATTGAGAATTAGCGGCGCTTTTTT
1 AAAAACGCCACTAAAGAACGAGAATTAGCGACGCTTTTTT
70115957 AAAAA
1 AAAAA
70115962 TACCGCTATA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 29 0.74
40 10 0.26
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (40 bp):
AAAAACGCCACTAAAGAACGAGAATTAGCGACGCTTTTTT
Found at i:70116221 original size:126 final size:126
Alignment explanation
Indices: 70116047--70116493 Score: 795
Period size: 126 Copynumber: 3.5 Consensus size: 126
70116037 CACAACACAG
** * *
70116047 TCGTTTTGTATTGAGCCTTTGGTGGCTTTAGCTGCGCTTTTTAAAAACGCCGCTAAAGATCGAGT
1 TCGTTTTGTATTGAGATTTTAGTGGCTTTAGCAGCGCTTTTTAAAAACGCCGCTAAAGATCGAGT
70116112 ATTAGCAGCGCTTTTTAGAAAACATTGCTAATGCTTGGCAAAATAATTTTGTAAAACGCCA
66 ATTAGCAGCGCTTTTTAGAAAACATTGCTAATGCTTGGCAAAATAATTTTGTAAAACGCCA
70116173 TCGTTTTGTATTGAGATTTTAGTGGCTTTAGCAGCGCTTTTTAAAAACGCCGCTAAAGATCGAGT
1 TCGTTTTGTATTGAGATTTTAGTGGCTTTAGCAGCGCTTTTTAAAAACGCCGCTAAAGATCGAGT
70116238 ATTAGCAGCGCTTTTTAGAAAACATTGCTAATGCTTGGCAAAATAATTTTGTAAAACGCCA
66 ATTAGCAGCGCTTTTTAGAAAACATTGCTAATGCTTGGCAAAATAATTTTGTAAAACGCCA
* **
70116299 TCGTTTTGTATTGAGATTTTAGTGGCTTTAGCGGCGCTTTTTAAAAACAACGCTAAAGATCGAGT
1 TCGTTTTGTATTGAGATTTTAGTGGCTTTAGCAGCGCTTTTTAAAAACGCCGCTAAAGATCGAGT
* **
70116364 ATTAGCGGCGCTTTTTAGAAAACACCGCTAATGCTTGGCAAAATAATTTTGTAAAACGCCA
66 ATTAGCAGCGCTTTTTAGAAAACATTGCTAATGCTTGGCAAAATAATTTTGTAAAACGCCA
*
70116425 TCGTTTTGTATTGAGATTTTAGTGGCTTTAGCAGCGCTTTTTAAAAACGCCGCTAAAGATCAAGT
1 TCGTTTTGTATTGAGATTTTAGTGGCTTTAGCAGCGCTTTTTAAAAACGCCGCTAAAGATCGAGT
70116490 ATTA
66 ATTA
70116494 ACGGCACTTT
Statistics
Matches: 307, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
126 307 1.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34
Consensus pattern (126 bp):
TCGTTTTGTATTGAGATTTTAGTGGCTTTAGCAGCGCTTTTTAAAAACGCCGCTAAAGATCGAGT
ATTAGCAGCGCTTTTTAGAAAACATTGCTAATGCTTGGCAAAATAATTTTGTAAAACGCCA
Found at i:70116574 original size:40 final size:38
Alignment explanation
Indices: 70116450--70116596 Score: 116
Period size: 40 Copynumber: 3.7 Consensus size: 38
70116440 ATTTTAGTGG
* * *
70116450 CTTTAGCAGCGCTTTTT-AAAAACGCCGCTAAAGATCAA
1 CTTTAGCAGCACTTTTTAAAAAACGCCGCTAATG-TCAT
* * * * * *
70116488 GTATTAACGGCACTTTTTTAAGAAACACCGCTATATGTACAC
1 CT-TTAGCAGCAC-TTTTTAAAAAACGCCGCTA-ATGT-CAT
*
70116530 CTTTAGCGGCACTTTTTAAAAAACGCCGCTAATGCTCGAT
1 CTTTAGCAGCACTTTTTAAAAAACGCCGCTAATG-TC-AT
* *
70116570 CTTTAGCAGCATTTTTTGAAAAACGCC
1 CTTTAGCAGCACTTTTTAAAAAACGCC
70116597 ACAAAAAATG
Statistics
Matches: 86, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
38 1 0.01
39 11 0.13
40 48 0.56
41 21 0.24
42 5 0.06
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (38 bp):
CTTTAGCAGCACTTTTTAAAAAACGCCGCTAATGTCAT
Found at i:70116796 original size:21 final size:21
Alignment explanation
Indices: 70116750--70116873 Score: 56
Period size: 21 Copynumber: 5.8 Consensus size: 21
70116740 TTAATTATCA
* *
70116750 TTATAGTTTAGGGTTTATGGT
1 TTATGGTTAAGGGTTTATGGT
*
70116771 ATATGGTTAAGGGTTTAAT-GT
1 TTATGGTTAAGGGTTT-ATGGT
*** *
70116792 TTATGAGTT-ACTATTGTAAGGT
1 TTATG-GTTAAGGGTT-TATGGT
* * *
70116814 TTATGGATTATGGGTTTAAGGA
1 TTATGG-TTAAGGGTTTATGGT
* *
70116836 TTATGGTTTATGGTTTATGGGT
1 TTATGGTTAAGGGTTTAT-GGT
* *
70116858 TAAGGGTT-AGGGTTTA
1 TTATGGTTAAGGGTTTA
70116874 AGTTTCAAGG
Statistics
Matches: 75, Mismatches: 21, Indels: 14
0.68 0.19 0.13
Matches are distributed among these distances:
21 39 0.52
22 34 0.45
23 2 0.03
ACGTcount: A:0.23, C:0.01, G:0.30, T:0.46
Consensus pattern (21 bp):
TTATGGTTAAGGGTTTATGGT
Found at i:70116826 original size:7 final size:7
Alignment explanation
Indices: 70116811--70116855 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
70116801 ACTATTGTAA
70116811 GGTTTAT
1 GGTTTAT
*
70116818 GGATTAT
1 GGTTTAT
*
70116825 GGGTTTAA
1 -GGTTTAT
*
70116833 GGATTAT
1 GGTTTAT
70116840 GGTTTAT
1 GGTTTAT
70116847 GGTTTAT
1 GGTTTAT
70116854 GG
1 GG
70116856 GTTAAGGGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
7 26 0.84
8 5 0.16
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (7 bp):
GGTTTAT
Found at i:70116831 original size:15 final size:15
Alignment explanation
Indices: 70116811--70116858 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
70116801 ACTATTGTAA
70116811 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
70116826 GGTTTAAGGATTAT-
1 GGTTTATGGATTATG
*
70116840 GGTTTATGGTTTATG
1 GGTTTATGGATTATG
70116855 GGTT
1 GGTT
70116859 AAGGGTTAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 12 0.41
15 17 0.59
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.48
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:70116833 original size:22 final size:22
Alignment explanation
Indices: 70116808--70116875 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 22
70116798 GTTACTATTG
*
70116808 TAAGGTTTATGGATTATGGGTT
1 TAAGGATTATGGATTATGGGTT
*
70116830 TAAGGATTATGGTTTAT-GGTT
1 TAAGGATTATGGATTATGGGTT
* * * *
70116851 TATGGGTTAAGGGTTA-GGGTT
1 TAAGGATTATGGATTATGGGTT
70116872 TAAG
1 TAAG
70116876 TTTCAAGGTG
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
21 23 0.61
22 15 0.39
ACGTcount: A:0.24, C:0.00, G:0.34, T:0.43
Consensus pattern (22 bp):
TAAGGATTATGGATTATGGGTT
Found at i:70116845 original size:14 final size:14
Alignment explanation
Indices: 70116811--70116875 Score: 67
Period size: 14 Copynumber: 4.6 Consensus size: 14
70116801 ACTATTGTAA
*
70116811 GGTTTATGGATTAT
1 GGTTTAAGGATTAT
70116825 GGGTTTAAGGATTAT
1 -GGTTTAAGGATTAT
* *
70116840 GGTTTATGGTTTAT
1 GGTTTAAGGATTAT
* * *
70116854 GGGTTAAGGGTTAG
1 GGTTTAAGGATTAT
70116868 GGTTTAAG
1 GGTTTAAG
70116876 TTTCAAGGTG
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
14 29 0.69
15 13 0.31
ACGTcount: A:0.22, C:0.00, G:0.35, T:0.43
Consensus pattern (14 bp):
GGTTTAAGGATTAT
Found at i:70116965 original size:15 final size:15
Alignment explanation
Indices: 70116945--70116992 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
70116935 ACTATTGTAA
70116945 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
70116960 GGTTTAAGGATTAT-
1 GGTTTATGGATTATG
*
70116974 GGTTTATGGTTTATG
1 GGTTTATGGATTATG
70116989 GGTT
1 GGTT
70116993 AAGGGTTAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 12 0.41
15 17 0.59
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.48
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:70117064 original size:36 final size:36
Alignment explanation
Indices: 70116974--70117085 Score: 111
Period size: 36 Copynumber: 3.1 Consensus size: 36
70116964 TAAGGATTAT
* * * *
70116974 GGTTTATGGTTTATGGGTTAAGGGTTAGGGTTTAA-
1 GGTTTATGTTTTATGGTTTAAGGTTTAGGGGTTAAG
* * *
70117009 GTTTTA-GATGGTTAGGGTTTAAGGTTTAGGGGTTAAG
1 GGTTTATG-T-TTTATGGTTTAAGGTTTAGGGGTTAAG
* *
70117046 GGTTTATGTTTTATGGTTTAAGGTTTATGGGTTAGG
1 GGTTTATGTTTTATGGTTTAAGGTTTAGGGGTTAAG
70117082 GGTT
1 GGTT
70117086 AGGGATTTAG
Statistics
Matches: 61, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
34 1 0.02
35 5 0.08
36 48 0.79
37 6 0.10
38 1 0.02
ACGTcount: A:0.19, C:0.00, G:0.37, T:0.45
Consensus pattern (36 bp):
GGTTTATGTTTTATGGTTTAAGGTTTAGGGGTTAAG
Found at i:70117100 original size:36 final size:36
Alignment explanation
Indices: 70117020--70117101 Score: 103
Period size: 36 Copynumber: 2.3 Consensus size: 36
70117010 TTTTAGATGG
* * *
70117020 TTAGGGTTTAAGGTTTAGGGGTTAAGGGTTTATGTT
1 TTAGGGTTTAAGGTTTAGGGGTTAAGGGGTTAGGAT
* *
70117056 TTATGGTTTAAGGTTTATGGGTT-AGGGGTTAGGGAT
1 TTAGGGTTTAAGGTTTAGGGGTTAAGGGGTTA-GGAT
70117092 TTAGGGTTTA
1 TTAGGGTTTA
70117102 GATTAATTAG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
35 7 0.18
36 32 0.82
ACGTcount: A:0.20, C:0.00, G:0.37, T:0.44
Consensus pattern (36 bp):
TTAGGGTTTAAGGTTTAGGGGTTAAGGGGTTAGGAT
Found at i:70117101 original size:7 final size:7
Alignment explanation
Indices: 70116945--70117102 Score: 88
Period size: 7 Copynumber: 22.0 Consensus size: 7
70116935 ACTATTGTAA
*
70116945 GGTTTAT
1 GGTTTAG
*
70116952 GGATTATG
1 GGTTTA-G
*
70116960 GGTTTAA
1 GGTTTAG
* *
70116967 GGATTAT
1 GGTTTAG
*
70116974 GGTTTAT
1 GGTTTAG
70116981 GGTTTATG
1 GGTTTA-G
*
70116989 GGTTAAG
1 GGTTTAG
70116996 GG-TTAG
1 GGTTTAG
*
70117002 GGTTTAA
1 GGTTTAG
*
70117009 GTTTTAG
1 GGTTTAG
70117016 ATGG-TTAG
1 --GGTTTAG
*
70117024 GGTTTAA
1 GGTTTAG
70117031 GGTTTAGG
1 GGTTTA-G
*
70117039 GGTTAAG
1 GGTTTAG
*
70117046 GGTTTAT
1 GGTTTAG
* *
70117053 GTTTTAT
1 GGTTTAG
*
70117060 GGTTTAA
1 GGTTTAG
70117067 GGTTTATG
1 GGTTTA-G
70117075 GG-TTAG
1 GGTTTAG
*
70117081 GGGTTAG
1 GGTTTAG
70117088 GGATTTAG
1 GG-TTTAG
70117096 GGTTTAG
1 GGTTTAG
70117103 ATTAATTAGT
Statistics
Matches: 117, Mismatches: 24, Indels: 20
0.73 0.15 0.12
Matches are distributed among these distances:
6 10 0.09
7 79 0.68
8 27 0.23
9 1 0.01
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.44
Consensus pattern (7 bp):
GGTTTAG
Found at i:70117102 original size:22 final size:21
Alignment explanation
Indices: 70116942--70117102 Score: 115
Period size: 22 Copynumber: 7.5 Consensus size: 21
70116932 GTTACTATTG
* *
70116942 TAAGGTTTATGGATTATGGGTT
1 TAAGGTTTAGGGGTTA-GGGTT
* * * *
70116964 TAAGGATTATGGTTTATGGTT
1 TAAGGTTTAGGGGTTAGGGTT
* * *
70116985 TATGGGTTAAGGGTTAGGGTT
1 TAAGGTTTAGGGGTTAGGGTT
* *
70117006 TAAGTTTTAGATGGTTAGGGTT
1 TAAGGTTTAG-GGGTTAGGGTT
70117028 TAAGGTTTAGGGGTTAAGGGTT
1 TAAGGTTTAGGGGTT-AGGGTT
* * * * *
70117050 TATGTTTTATGGTTTAAGGTT
1 TAAGGTTTAGGGGTTAGGGTT
* *
70117071 TATGGGTTAGGGGTTAGGGATT
1 TAAGGTTTAGGGGTTAGGG-TT
*
70117093 TAGGGTTTAG
1 TAAGGTTTAG
70117103 ATTAATTAGT
Statistics
Matches: 109, Mismatches: 27, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
21 49 0.45
22 60 0.55
ACGTcount: A:0.21, C:0.00, G:0.35, T:0.43
Consensus pattern (21 bp):
TAAGGTTTAGGGGTTAGGGTT
Found at i:70125874 original size:13 final size:13
Alignment explanation
Indices: 70125808--70125865 Score: 53
Period size: 13 Copynumber: 4.4 Consensus size: 13
70125798 ATATGTTTAG
70125808 ATGAAATGGTTAT
1 ATGAAATGGTTAT
** * *
70125821 ACAAAATGTTTTT
1 ATGAAATGGTTAT
* *
70125834 ATGAAAATAGATAT
1 ATG-AAATGGTTAT
70125848 ATGAAATGGTTAT
1 ATGAAATGGTTAT
70125861 ATGAA
1 ATGAA
70125866 GTGTCTATAC
Statistics
Matches: 32, Mismatches: 12, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
13 23 0.72
14 9 0.28
ACGTcount: A:0.45, C:0.02, G:0.17, T:0.36
Consensus pattern (13 bp):
ATGAAATGGTTAT
Found at i:70130099 original size:41 final size:41
Alignment explanation
Indices: 70130041--70130140 Score: 155
Period size: 41 Copynumber: 2.4 Consensus size: 41
70130031 GATGAATTAT
*
70130041 ACATACATGCCCCTGTTTGTACTTCAGTACCCCTAAATTGC
1 ACATACGTGCCCCTGTTTGTACTTCAGTACCCCTAAATTGC
* * *
70130082 ACATACGTGCCCTTGTTTGTACTTCGGTACCCCTGAATTGC
1 ACATACGTGCCCCTGTTTGTACTTCAGTACCCCTAAATTGC
*
70130123 ACACACGTGCCCCTGTTT
1 ACATACGTGCCCCTGTTT
70130141 AGACTTCGAA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.20, C:0.32, G:0.16, T:0.32
Consensus pattern (41 bp):
ACATACGTGCCCCTGTTTGTACTTCAGTACCCCTAAATTGC
Found at i:70139830 original size:40 final size:39
Alignment explanation
Indices: 70139771--70140027 Score: 286
Period size: 40 Copynumber: 6.5 Consensus size: 39
70139761 CGGATGATAA
* * *
70139771 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* * * *
70139811 CCGGGCTAAGTCCCCAAGGCTTTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* * *
70139851 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
*
70139891 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
*
70139931 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
* *
70139971 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAT-T
* *
70140010 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70140028 TACTTGGCTT
Statistics
Matches: 192, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
38 15 0.08
39 15 0.08
40 162 0.84
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATT
Found at i:70139984 original size:120 final size:119
Alignment explanation
Indices: 70139771--70140001 Score: 331
Period size: 120 Copynumber: 1.9 Consensus size: 119
70139761 CGGATGATAA
* * *
70139771 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCCAAGGCTTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCCAAGGCATTGG
* *
70139836 TGCGAGTTATTACATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
66 TGCGAGTTACTACATCCAGGCTAAGTCCCGAAGGCA-TTGAGCGAGTTATTACAT
* *
70139891 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCT-ACTA-TATCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAG-TGACTAGT-TCCGGGCTAAGTCCCCAAGGCATT
* * *
70139954 GGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATTGAGCGAGT
64 GGTGCGAGTTACTACATCCAGGCTAAGTCCCGAAGGCATTGAGCGAGT
70140002 AGCTATATCC
Statistics
Matches: 99, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
119 10 0.10
120 88 0.89
121 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.26
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCCAAGGCATTGG
TGCGAGTTACTACATCCAGGCTAAGTCCCGAAGGCATTGAGCGAGTTATTACAT
Found at i:70147266 original size:34 final size:37
Alignment explanation
Indices: 70147222--70147292 Score: 103
Period size: 34 Copynumber: 2.0 Consensus size: 37
70147212 TTAAAACTAC
*
70147222 CCCTAGATTTAAACCTT-A-A-AACTTATAATCCTAT
1 CCCTAAATTTAAACCTTAAGATAACTTATAATCCTAT
70147256 CCCTAAATTTAAACCTTGAAGATAACTTATAATCCTA
1 CCCTAAATTTAAACCTT-AAGATAACTTATAATCCTA
70147293 GACATCTGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 16 0.50
36 1 0.03
37 1 0.03
38 14 0.44
ACGTcount: A:0.39, C:0.23, G:0.04, T:0.34
Consensus pattern (37 bp):
CCCTAAATTTAAACCTTAAGATAACTTATAATCCTAT
Found at i:70151925 original size:22 final size:22
Alignment explanation
Indices: 70151897--70151940 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
70151887 AAGAGAGAGA
70151897 AAATATTCTTTGAATTTTTTGT
1 AAATATTCTTTGAATTTTTTGT
70151919 AAATATTCTTTGAATTTTTTGT
1 AAATATTCTTTGAATTTTTTGT
70151941 GGGCTAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.05, G:0.09, T:0.59
Consensus pattern (22 bp):
AAATATTCTTTGAATTTTTTGT
Found at i:70152560 original size:16 final size:16
Alignment explanation
Indices: 70152539--70152574 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
70152529 GATTAGGGTG
70152539 AATGGAATA-AGACTGT
1 AATGGAATAGAGA-TGT
70152555 AATGGAATAGAGATGT
1 AATGGAATAGAGATGT
70152571 AATG
1 AATG
70152575 TAACATAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.84
17 3 0.16
ACGTcount: A:0.44, C:0.03, G:0.28, T:0.25
Consensus pattern (16 bp):
AATGGAATAGAGATGT
Found at i:70152854 original size:59 final size:59
Alignment explanation
Indices: 70152783--70152947 Score: 217
Period size: 59 Copynumber: 2.7 Consensus size: 59
70152773 ATTTAATAAG
* *
70152783 ATTATTACTAAATATAATTTAATAAAAATAATGATATAATTTAATAATATT-TTAACATA
1 ATTATTATTAAATATAATTTAATAAAAATAAT-ATATAATTTAATAACATTCTTAACATA
*
70152842 ATTATTATTAAATATAATTTAAT-AAAATAATATATAATTTAATAACATTCTTAATATA
1 ATTATTATTAAATATAATTTAATAAAAATAATATATAATTTAATAACATTCTTAACATA
* *
70152900 ATTATTTTTAAAATATAAATTAATAAAAATCATTATATATAATATTAA
1 ATTATTATT-AAATATAATTTAATAAAAAT-A--ATATATAAT-TTAA
70152948 AAAAATAATA
Statistics
Matches: 94, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
57 17 0.18
58 23 0.24
59 35 0.37
60 5 0.05
61 1 0.01
63 9 0.10
64 4 0.04
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.44
Consensus pattern (59 bp):
ATTATTATTAAATATAATTTAATAAAAATAATATATAATTTAATAACATTCTTAACATA
Found at i:70152959 original size:23 final size:24
Alignment explanation
Indices: 70152912--70152961 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
70152902 TATTTTTAAA
*
70152912 ATATAAATTAATAAAAATCATTAT
1 ATATAAATTAATAAAAATCAATAT
70152936 ATATAATATTAA-AAAAAT-AATAT
1 ATATAA-ATTAATAAAAATCAATAT
70152959 ATA
1 ATA
70152962 ACTTACTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 7 0.29
24 12 0.50
25 5 0.21
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (24 bp):
ATATAAATTAATAAAAATCAATAT
Found at i:70161442 original size:21 final size:21
Alignment explanation
Indices: 70161413--70161454 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
70161403 GATACCTGGT
*
70161413 AAAAAGTATCGATACTTTTTG
1 AAAAAGTATCAATACTTTTTG
* *
70161434 AAAAGGTATTAATACTTTTTG
1 AAAAAGTATCAATACTTTTTG
70161455 TATATCAATG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.40
Consensus pattern (21 bp):
AAAAAGTATCAATACTTTTTG
Found at i:70162193 original size:21 final size:22
Alignment explanation
Indices: 70162161--70162210 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 22
70162151 TTGATCAACT
*
70162161 TTTGT-TTAATG-TTTTATTA-
1 TTTGTGTTAATGTTTTTATAAG
70162180 TTTGTGTTATATGTTTTTATAAG
1 TTTGTGTTA-ATGTTTTTATAAG
70162203 TTTGTGTT
1 TTTGTGTT
70162211 TTAATTTGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 5 0.19
20 3 0.12
21 3 0.12
22 7 0.27
23 8 0.31
ACGTcount: A:0.18, C:0.00, G:0.16, T:0.66
Consensus pattern (22 bp):
TTTGTGTTAATGTTTTTATAAG
Found at i:70174366 original size:11 final size:11
Alignment explanation
Indices: 70174350--70174377 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
70174340 AATAAAAAGG
70174350 GAAAATCAAGT
1 GAAAATCAAGT
70174361 GAAAATCAAGT
1 GAAAATCAAGT
70174372 GAAAAT
1 GAAAAT
70174378 GTTGTCTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.57, C:0.07, G:0.18, T:0.18
Consensus pattern (11 bp):
GAAAATCAAGT
Found at i:70177906 original size:28 final size:28
Alignment explanation
Indices: 70177866--70177924 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
70177856 ACCATAAACA
70177866 AGTTCAAATGGTGAATAGCCAGTTGTAG
1 AGTTCAAATGGTGAATAGCCAGTTGTAG
70177894 AGTTCAAATGGTGAATAGCCAGTTGTAG
1 AGTTCAAATGGTGAATAGCCAGTTGTAG
70177922 AGT
1 AGT
70177925 GAATGATCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.29
Consensus pattern (28 bp):
AGTTCAAATGGTGAATAGCCAGTTGTAG
Found at i:70180943 original size:39 final size:39
Alignment explanation
Indices: 70180855--70181109 Score: 377
Period size: 39 Copynumber: 6.5 Consensus size: 39
70180845 ACAAAGCATG
* * *
70180855 CGGGACTTTAAGCCCGGATGTAATACCAGCAC-AAAGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
** * *
70180895 TAGGACTTAGCTCGGATATAACACCAGCACGAGTGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
70180934 CGGGACTTAGCCCGGGTATAACACCAGCACGAATGGCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
70180973 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
70181012 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
70181051 CGGGACTTAGCCCGGATATAACACCAGCATGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
70181090 CGGGAATTAGCCCGGATATA
1 CGGGACTTAGCCCGGATATA
70181110 TATCTCACAC
Statistics
Matches: 195, Mismatches: 19, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
38 19 0.10
39 172 0.88
40 4 0.02
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:70185426 original size:24 final size:24
Alignment explanation
Indices: 70185394--70185440 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
70185384 CACACGGGTA
70185394 GGGACACAGGCGTGTGTCTTAGCT
1 GGGACACAGGCGTGTGTCTTAGCT
70185418 GGGACACAGGCGTGTGTCTTAGC
1 GGGACACAGGCGTGTGTCTTAGC
70185441 CGTGTGCGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.17, C:0.21, G:0.38, T:0.23
Consensus pattern (24 bp):
GGGACACAGGCGTGTGTCTTAGCT
Found at i:70190061 original size:17 final size:17
Alignment explanation
Indices: 70190039--70190082 Score: 88
Period size: 17 Copynumber: 2.6 Consensus size: 17
70190029 ATTCCCCCTC
70190039 CAAGAAAGAGATCTTAG
1 CAAGAAAGAGATCTTAG
70190056 CAAGAAAGAGATCTTAG
1 CAAGAAAGAGATCTTAG
70190073 CAAGAAAGAG
1 CAAGAAAGAG
70190083 CTTGAAGATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.50, C:0.11, G:0.25, T:0.14
Consensus pattern (17 bp):
CAAGAAAGAGATCTTAG
Found at i:70190889 original size:44 final size:43
Alignment explanation
Indices: 70190827--70190991 Score: 160
Period size: 44 Copynumber: 3.9 Consensus size: 43
70190817 ATTCTTATAG
*
70190827 GTGATTACGTGTAAGACCACGTTTGGGACGTTGGCATCGATTT
1 GTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATTT
* ** *
70190870 GTGATTTACGTGTAAGACCATGTCTGGGATATCGGCATCG-TATT
1 GTGA-TTACGTGTAAGACCACGTCTGGGACGTTGGCATCGAT-TT
* * *
70190914 -TGATT-GGTGTAAGACC-CTGTCTGGGACAG-TGGTATCGATAT
1 GTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATTT
* * *
70190955 GTGATTACATGGAAGACCACGTTTGGGACGTTGGCAT
1 GTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
70190992 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 17, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
41 25 0.26
42 9 0.09
43 29 0.30
44 33 0.34
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (43 bp):
GTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATTT
Found at i:70198908 original size:47 final size:46
Alignment explanation
Indices: 70198799--70198909 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 46
70198789 CCGGGATAAG
*
70198799 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATCATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACA-CATAGTA
* *
70198846 CACAAAGTACTTCATCGGAACAAATCCAGAACTTTAACA-ATAGTCGA
1 CACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACACATAGT--A
70198893 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
70198910 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
45 5 0.09
46 1 0.02
47 50 0.89
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.24
Consensus pattern (46 bp):
CACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACACATAGTA
Found at i:70199714 original size:4 final size:4
Alignment explanation
Indices: 70199697--70199730 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
70199687 TCTCTGTAAC
*
70199697 TCTT TCTA TCTT TCTT TCTT T-TT TCTT TCTT TCT
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCT
70199731 CACGTTTACT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.74
Consensus pattern (4 bp):
TCTT
Found at i:70199732 original size:53 final size:52
Alignment explanation
Indices: 70199655--70199777 Score: 210
Period size: 53 Copynumber: 2.3 Consensus size: 52
70199645 AATTTTCCCT
* *
70199655 TTTCTTTTTCTTTCTTTCTTTCTCACGTTTACTCTCTGTAACTCTTTCTATC
1 TTTCTTTTTTTTTCTTTCTTTCTCACGTTTACTCTCTGTAACTCTTTCTAGC
70199707 TTTCTTTCTTTTTTCTTTCTTTCTCACGTTTACTCTCTGTAACTCTTTCTAGC
1 TTTCTTT-TTTTTTCTTTCTTTCTCACGTTTACTCTCTGTAACTCTTTCTAGC
*
70199760 TTTCTTTTTTTTTATTTC
1 TTTCTTTTTTTTTCTTTC
70199778 CTTTATTCAT
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
52 17 0.25
53 50 0.75
ACGTcount: A:0.09, C:0.24, G:0.04, T:0.63
Consensus pattern (52 bp):
TTTCTTTTTTTTTCTTTCTTTCTCACGTTTACTCTCTGTAACTCTTTCTAGC
Found at i:70201070 original size:30 final size:30
Alignment explanation
Indices: 70201036--70201093 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
70201026 TCGAGCCTAG
70201036 GGGCAAAAGTGTAAATATGCAAAAGTTTAT
1 GGGCAAAAGTGTAAATATGCAAAAGTTTAT
* * * *
70201066 GGGCAAAATTGTAATTTTTCAAAAGTTT
1 GGGCAAAAGTGTAAATATGCAAAAGTTT
70201094 GAGTTAAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.33
Consensus pattern (30 bp):
GGGCAAAAGTGTAAATATGCAAAAGTTTAT
Found at i:70201908 original size:64 final size:64
Alignment explanation
Indices: 70201828--70202011 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
70201818 AGACATTATG
* * *
70201828 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
** * * * *
70201892 ATGTAGCTAGGTCGCATGCATGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
70201957 AA
63 AA
* * *
70201959 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
70202012 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 24 0.25
66 20 0.21
67 33 0.34
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:70210876 original size:13 final size:13
Alignment explanation
Indices: 70210858--70210882 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70210848 TCAACTATAA
70210858 TTAATAAATATTT
1 TTAATAAATATTT
70210871 TTAATAAATATT
1 TTAATAAATATT
70210883 CATGAATTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTAATAAATATTT
Found at i:70213783 original size:30 final size:30
Alignment explanation
Indices: 70213725--70213784 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
70213715 TTCCCGAGCC
*
70213725 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATCCAAAAGTT
* *
70213755 TAGGGGCAAAAGTGTAATTTTCCCAAAGTT
1 TAGGGGCAAAAGTGTAATTATCCAAAAGTT
70213785 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.37, C:0.10, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATCCAAAAGTT
Found at i:70214363 original size:93 final size:93
Alignment explanation
Indices: 70214204--70214374 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
70214194 GGATGGTTGA
* *
70214204 GCATCCGAACTCATTGAGTTGAGTCCGAGCTCACTTATAGATGCGAATGTCCAAACTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGCTCACTTATAGATGCGAACGCCCAAACTCATTGAGT
*
70214269 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCAAGTTCGTGAGATGTAACTAG
* * * * * *
70214297 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGCTCACTTATAGATGCGAACGCCCAAACTCATTGAGT
70214362 TGAGTCCAAGTTC
66 TGAGTCCAAGTTC
70214375 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGCTCACTTATAGATGCGAACGCCCAAACTCATTGAGT
TGAGTCCAAGTTCGTGAGATGTAACTAG
Found at i:70219204 original size:29 final size:27
Alignment explanation
Indices: 70219186--70219255 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
70219176 ATATTAAGTC
70219186 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
70219213 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
70219241 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
70219256 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:70219249 original size:28 final size:28
Alignment explanation
Indices: 70219186--70219283 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
70219176 ATATTAAGTC
*
70219186 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
70219213 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
70219241 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
70219270 CGCACACTTAGTGC
1 CGCACACTTAGTGC
70219284 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70226556 original size:40 final size:40
Alignment explanation
Indices: 70226519--70226703 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
70226509 GCTACTCGTT
* *
70226519 CAAAGGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
70226559 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* ** *
70226599 CCAATGCCTTCGGG-CTTAGCCCGGAACTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
70226638 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
70226679 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70226704 CATCATTCGA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 79 0.64
41 12 0.10
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:70226631 original size:79 final size:79
Alignment explanation
Indices: 70226519--70226703 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 79
70226509 GCTACTCGTT
* * *
70226519 CAAAGGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGG-AATAGTAACTCACACAAATGCCTTC-GGATCTTAACCCG
* *
70226583 GATTTAGTAAC-TCGCA
63 GATATAGTAACTTAGCA
* **
70226599 CCAATGCCTTCGGG-CTTAGCCCGGAACTAGTAACTCACACAAATGCCTTCGGATCTTAGTCCGG
1 -CAAAGCCTTCGGGACTTAGCCCGGAA-TAGTAACTCACACAAATGCCTTCGGATCTTAACCCGG
*
70226663 ATATAGTCACTTAGCA
64 ATATAGTAACTTAGCA
70226679 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
70226704 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 4 0.04
79 59 0.66
80 24 0.27
81 3 0.03
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (79 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCA
Found at i:70227223 original size:73 final size:74
Alignment explanation
Indices: 70227125--70227273 Score: 255
Period size: 73 Copynumber: 2.0 Consensus size: 74
70227115 TTTTGTTTTC
* *
70227125 TTTTCCTCCACTCACGGCAATGGGGGTGGGGAGACAATCACACACATTCTTTTCTTTTTTTTT-C
1 TTTTCCCCCACTCACGGCAATGGGGGGGGGGAGACAATCACACACATTCTTTTCTTTTTTTTTCC
70227189 ATTTCTTTA
66 ATTTCTTTA
* *
70227198 TTTTCCCCCCCTCACGGCAATGGGGGGGGGGAGACAATCACACACATTCTTTTTTTTTTTTTTCC
1 TTTTCCCCCACTCACGGCAATGGGGGGGGGGAGACAATCACACACATTCTTTTCTTTTTTTTTCC
70227263 ATTTCTTTA
66 ATTTCTTTA
70227272 TT
1 TT
70227274 ACCCATACTC
Statistics
Matches: 71, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
73 59 0.83
74 12 0.17
ACGTcount: A:0.18, C:0.24, G:0.17, T:0.41
Consensus pattern (74 bp):
TTTTCCCCCACTCACGGCAATGGGGGGGGGGAGACAATCACACACATTCTTTTCTTTTTTTTTCC
ATTTCTTTA
Found at i:70234076 original size:30 final size:30
Alignment explanation
Indices: 70234018--70234077 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
70234008 TTCCCGAGCC
*
70234018 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATCCAAAAGTT
* *
70234048 TAGGGGCAAAAGTGTAATTTTCCCAAAGTT
1 TAGGGGCAAAAGTGTAATTATCCAAAAGTT
70234078 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.37, C:0.10, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATCCAAAAGTT
Found at i:70237033 original size:45 final size:45
Alignment explanation
Indices: 70236971--70237062 Score: 139
Period size: 45 Copynumber: 2.0 Consensus size: 45
70236961 TAGCATTATG
* *
70236971 ATATGTGTTTTCGTGTAAGACCACATCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCATGTAAGACCACATCTGGGACGTTGGCATCCAT
* * *
70237016 ATATGTGTTTTCATGTAAGACTACGTCTGGGATGTTGGCATCCAT
1 ATATGTGTTTTCATGTAAGACCACATCTGGGACGTTGGCATCCAT
70237061 AT
1 AT
70237063 GTGGTTACGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (45 bp):
ATATGTGTTTTCATGTAAGACCACATCTGGGACGTTGGCATCCAT
Found at i:70237077 original size:43 final size:44
Alignment explanation
Indices: 70236971--70237077 Score: 119
Period size: 45 Copynumber: 2.4 Consensus size: 44
70236961 TAGCATTATG
* *
70236971 ATATGTGTTTTCGTGTAAGACCACATCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGAGTAAGACCACATCTGGGACGTTGGCATC-AC
* * *
70237016 ATATGTGTTTTC-ATGTAAGACTACGTCTGGGATGTTGGCATC-C
1 ATATGTGTTTTCGA-GTAAGACCACATCTGGGACGTTGGCATCAC
* *
70237059 ATATGTGGTTACGAGTAAG
1 ATATGTGTTTTCGAGTAAG
70237078 GCCATGTTTG
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
43 15 0.28
44 1 0.02
45 37 0.70
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (44 bp):
ATATGTGTTTTCGAGTAAGACCACATCTGGGACGTTGGCATCAC
Found at i:70247979 original size:43 final size:43
Alignment explanation
Indices: 70247818--70247988 Score: 181
Period size: 43 Copynumber: 4.0 Consensus size: 43
70247808 CATAAGATTC
* *
70247818 CGATATGTGATTACGTGTAAGATCACGTCTGGGACGTTGGCCT
1 CGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
* * * *
70247861 CGA-ATTGTGATTTATGTGTAAGACCATGTCTGGGACATTAGCAT
1 CGATA-TGTGA-TTACGTGTAAGACCACGTCTGGGACGTTGGCAT
* * *
70247905 C-ATATTTGATT-CGTATAAGACC-CTGTTTGGGACAG-TGGCAT
1 CGATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCAT
*
70247946 CGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
70247989 TATATGAGCT
Statistics
Matches: 102, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
41 23 0.23
42 13 0.13
43 36 0.35
44 30 0.29
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (43 bp):
CGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:70250831 original size:49 final size:50
Alignment explanation
Indices: 70250751--70250983 Score: 285
Period size: 49 Copynumber: 4.7 Consensus size: 50
70250741 ATCTATTGTG
*
70250751 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATT
* * *
70250801 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTG-ATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GAATAA-TT
* * * * **
70250851 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-AGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGA-ATAATT
* *
70250901 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATT
* *
70250951 -GGTCGCATGTATAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
70250984 TGCGTACTAG
Statistics
Matches: 156, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
49 71 0.46
50 48 0.31
51 37 0.24
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATT
Found at i:70250888 original size:28 final size:28
Alignment explanation
Indices: 70250856--70250939 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
70250846 AACTTCGATC
70250856 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
70250884 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
70250906 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
70250934 ACGTGT
1 ACGTGT
70250940 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:70251026 original size:150 final size:150
Alignment explanation
Indices: 70250751--70251029 Score: 438
Period size: 150 Copynumber: 1.9 Consensus size: 150
70250741 ATCTATTGTG
*
70250751 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTATAGT
* * *
70250816 ACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCAAGTGTGTAGAAATAAGTGCAGGCT
70250881 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
*
70250901 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTATAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTATAGT
* * *
70250966 ACTAAGTGCAGGCTACTATGCGTA-CTAGATAGCTTTGACTACAAGTGTG-A-AAATATGTGCAG
66 ACTAAGTGCAGGCTACTATGCGTACCT-GATAACTTCGA-T-CAAGTGTGTAGAAATAAGTGCAG
70251028 GC
128 GC
70251030 AACTGAGTAT
Statistics
Matches: 118, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
149 2 0.02
150 107 0.91
151 2 0.02
152 7 0.06
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (150 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTATAGT
ACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCAAGTGTGTAGAAATAAGTGCAGGCT
ACTACGTGTATCAGATGGTT
Found at i:70254907 original size:47 final size:47
Alignment explanation
Indices: 70254838--70254927 Score: 164
Period size: 47 Copynumber: 1.9 Consensus size: 47
70254828 GAAAATTTCA
70254838 TTTTTATTATATTTTTATGGCCTACGATTTCACA-AAATGATTTTGTG
1 TTTTTATTATATTTTTATGGCCTACGATTTCA-AGAAATGATTTTGTG
70254885 TTTTTATTATATTTTTATGGCCTACGATTTCAAGAAATGATTT
1 TTTTTATTATATTTTTATGGCCTACGATTTCAAGAAATGATTT
70254928 CATGAAAATT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
46 1 0.02
47 41 0.98
ACGTcount: A:0.27, C:0.10, G:0.12, T:0.51
Consensus pattern (47 bp):
TTTTTATTATATTTTTATGGCCTACGATTTCAAGAAATGATTTTGTG
Found at i:70256173 original size:49 final size:50
Alignment explanation
Indices: 70256034--70256178 Score: 177
Period size: 49 Copynumber: 2.9 Consensus size: 50
70256024 ATCTATTGTG
* * **
70256034 AGGTCACGTGT-TAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
70256083 AGGTCACATGTGTAGGACTAAGTGCAGGCTACTACATGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
70256133 -GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
70256179 GCTTTGACTA
Statistics
Matches: 81, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 49 0.60
50 32 0.40
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:70259857 original size:19 final size:19
Alignment explanation
Indices: 70259833--70259871 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
70259823 TTGTTTCAAC
*
70259833 AGTAAATTTCAATGGTTTT
1 AGTAAATTTCAATGATTTT
70259852 AGTAAATTTCAATGATTTT
1 AGTAAATTTCAATGATTTT
70259871 A
1 A
70259872 TTTGTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.36, C:0.05, G:0.13, T:0.46
Consensus pattern (19 bp):
AGTAAATTTCAATGATTTT
Found at i:70260726 original size:9 final size:9
Alignment explanation
Indices: 70260710--70260744 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
70260700 TTAATTAAGA
70260710 AATTAATTT
1 AATTAATTT
*
70260719 AGTTAATTT
1 AATTAATTT
70260728 AATTAATTT
1 AATTAATTT
70260737 AATTAATT
1 AATTAATT
70260745 AGTTAGATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (9 bp):
AATTAATTT
Found at i:70264035 original size:17 final size:18
Alignment explanation
Indices: 70264005--70264038 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
70263995 TATCATCTCA
70264005 CCAATATATATCACATTT
1 CCAATATATATCACATTT
*
70264023 CCAA-ATATTTCACATT
1 CCAATATATATCACATT
70264039 CATGCTATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (18 bp):
CCAATATATATCACATTT
Found at i:70267756 original size:24 final size:24
Alignment explanation
Indices: 70267729--70267795 Score: 64
Period size: 25 Copynumber: 2.7 Consensus size: 24
70267719 TATGCTCATA
*
70267729 CGAGTT-ATAAACGGTAAACTCCTC
1 CGAGTTAAT-AACGGTAAACCCCTC
* *
70267753 CGAGCTGAATAACGGTAAGCCCCTC
1 CGAG-TTAATAACGGTAAACCCCTC
*
70267778 CGAGTTGAATAACAGTAA
1 CGAGTT-AATAACGGTAA
70267796 GCTCATATAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
24 5 0.14
25 28 0.80
26 2 0.06
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (24 bp):
CGAGTTAATAACGGTAAACCCCTC
Found at i:70267766 original size:25 final size:25
Alignment explanation
Indices: 70267738--70267795 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
70267728 ACGAGTTATA
*
70267738 AACGGTAAACTCCTCCGAGCTGAAT
1 AACGGTAAACCCCTCCGAGCTGAAT
* *
70267763 AACGGTAAGCCCCTCCGAGTTGAAT
1 AACGGTAAACCCCTCCGAGCTGAAT
*
70267788 AACAGTAA
1 AACGGTAA
70267796 GCTCATATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.19
Consensus pattern (25 bp):
AACGGTAAACCCCTCCGAGCTGAAT
Found at i:70268946 original size:17 final size:18
Alignment explanation
Indices: 70268903--70268948 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
70268893 ATACGGCCCA
70268903 GTGGGCCCACATGCTCAT
1 GTGGGCCCACATGCTCAT
*
70268921 GTGGGCCCACATGCTCGT
1 GTGGGCCCACATGCTCAT
70268939 GT-GGCCCACA
1 GTGGGCCCACA
70268949 AAGCCCACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
17 8 0.30
18 19 0.70
ACGTcount: A:0.15, C:0.35, G:0.30, T:0.20
Consensus pattern (18 bp):
GTGGGCCCACATGCTCAT
Found at i:70271709 original size:462 final size:465
Alignment explanation
Indices: 70270842--70271767 Score: 1678
Period size: 462 Copynumber: 2.0 Consensus size: 465
70270832 TTAAAGTATA
70270842 TAAATACAAAATTTAATTACACAAACTTACCTTGACGAGGGTACATAGATACAGATGCGATTATT
1 TAAATACAAAATTTAATTACACAAACTTACCTTGACGAGGGTACATAGATACAGATGCGATTATT
* *
70270907 CCGAGATTTTTTCTTTGCCCCGATCTAACTCTATATGAGGTCTAACCGGATCTATACGAATGAAT
66 CCGAGATTTTTTCTTTGCCCCGATCTAACTCTATATAAGGTCTAACAGGATCTATACGAATGAAT
70270972 TTAACTCAATTCAATAAAAATCACATTAAATTTAGCCCAACACATATTTTTGAAAAAAATTACCA
131 TTAACTCAATTCAATAAAAATCACATTAAATTTAGCCCAACACATATTTTTGAAAAAAATTACCA
* *
70271037 TTTTACCCCTATACTTTTAATTCTTTGGAATTTAGTCCCTAGGTTCAGAAAATGAAATTCATTCA
196 TTTTACCCCTATACTTTTAATTCTTTGCAATCTAGTCCCTAGGTTCAGAAAATGAAATTCATTCA
* *
70271102 CTTTTATTCCTACCCAAGCCTAGCTAAAATTTAAACATGCTTATAGCAGCCCATATATTTCACAA
261 CTTTTATCCCTACCCAAGCCTAGCCAAAATTTAAACATGCTTATAGCAGCCCATATATTTCACAA
*
70271167 TTTCTCACTTTTACCACACAATTTATAATATTTCTCAATTTAATCCCTAATTGATAATTTCATCA
326 TTTCACACTTTTACCACACAATTTATAATATTTCTCAATTTAATCCCTAATTGATAATTTCATCA
70271232 AAAATTCCTTTACAAAGTTGTTTATCTAACAACAACAATTCTTTTTCTACCATTAAAATTCAAAA
391 AAAATTCCTTTACAAAGTTGTTTATCTAACAACAACAATTCTTTTTCTACCATTAAAATTCAAAA
70271297 CCCTAACATG
456 CCCTAACATG
* * *
70271307 TAAATACAAAATTTAATTGCACAAACTTACCTTGACGAGGGTACGTAGATACGGATGCGATTATT
1 TAAATACAAAATTTAATTACACAAACTTACCTTGACGAGGGTACATAGATACAGATGCGATTATT
*
70271372 CCGAGA-TTTTT-TTTGCCCCGATCTAACTCTGTATAAGGTCTAACAGGATCTATACGAATGAAT
66 CCGAGATTTTTTCTTTGCCCCGATCTAACTCTATATAAGGTCTAACAGGATCTATACGAATGAAT
* * *
70271435 TTAACTCAATTCAATAAAAATCACATTCAATTTAGCCTAACACATATTTTTG-GAAAAATTACCA
131 TTAACTCAATTCAATAAAAATCACATTAAATTTAGCCCAACACATATTTTTGAAAAAAATTACCA
*
70271499 TTTTACCCCTATACTTTTAATTCTTTGCAATCTAGTCCCTAGGTTCAGAAAATGAAATTCATTTA
196 TTTTACCCCTATACTTTTAATTCTTTGCAATCTAGTCCCTAGGTTCAGAAAATGAAATTCATTCA
70271564 CTTTTATCCCTACCCAAGCCTAGCCAAAATTTAAACATGCTTATAGCAGCCCATATATTTCACAA
261 CTTTTATCCCTACCCAAGCCTAGCCAAAATTTAAACATGCTTATAGCAGCCCATATATTTCACAA
70271629 TTTCACACTTTTACCACACAATTTATAATATTTCTCAATTTAATCCCTAATTGATAATTTCATCA
326 TTTCACACTTTTACCACACAATTTATAATATTTCTCAATTTAATCCCTAATTGATAATTTCATCA
* *
70271694 AAAATTCCTTTACAAAGTTGTTTATCTAACAACAACCATTCTTTTTCTACCATTAAACTTCAAAA
391 AAAATTCCTTTACAAAGTTGTTTATCTAACAACAACAATTCTTTTTCTACCATTAAAATTCAAAA
70271759 CCCTAACAT
456 CCCTAACAT
70271768 ATTCATCAAT
Statistics
Matches: 444, Mismatches: 17, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
462 272 0.61
463 99 0.22
464 5 0.01
465 68 0.15
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.35
Consensus pattern (465 bp):
TAAATACAAAATTTAATTACACAAACTTACCTTGACGAGGGTACATAGATACAGATGCGATTATT
CCGAGATTTTTTCTTTGCCCCGATCTAACTCTATATAAGGTCTAACAGGATCTATACGAATGAAT
TTAACTCAATTCAATAAAAATCACATTAAATTTAGCCCAACACATATTTTTGAAAAAAATTACCA
TTTTACCCCTATACTTTTAATTCTTTGCAATCTAGTCCCTAGGTTCAGAAAATGAAATTCATTCA
CTTTTATCCCTACCCAAGCCTAGCCAAAATTTAAACATGCTTATAGCAGCCCATATATTTCACAA
TTTCACACTTTTACCACACAATTTATAATATTTCTCAATTTAATCCCTAATTGATAATTTCATCA
AAAATTCCTTTACAAAGTTGTTTATCTAACAACAACAATTCTTTTTCTACCATTAAAATTCAAAA
CCCTAACATG
Found at i:70277770 original size:55 final size:53
Alignment explanation
Indices: 70277552--70277801 Score: 212
Period size: 49 Copynumber: 4.8 Consensus size: 53
70277542 ACACGGGTAC
* * * * * *
70277552 CTTACCATTTCCATGACTTGTCATGGTCTTACGTTGTATCCTT---TT-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTACCTTAGAAA
* * * **
70277601 CTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTACCTTAGAAA
* * * * * * *
70277654 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTACCTTAGAAA
* *
70277707 --T--CAATGCCATGTCTTGACATGGTCTTGCATGATATCCTTACCTTAGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTACCTTAGAAA
* *
70277756 CCTTACCAATTGCCATGGCTTGGCATGGTCTTACATGGTATCCTTA
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGTATCCTTA
70277802 AACCGTAATG
Statistics
Matches: 160, Mismatches: 29, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
49 74 0.46
50 2 0.01
52 5 0.03
53 44 0.28
54 3 0.02
55 32 0.20
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTACCTTAGAAA
Found at i:70280799 original size:29 final size:29
Alignment explanation
Indices: 70280723--70280789 Score: 107
Period size: 29 Copynumber: 2.3 Consensus size: 29
70280713 TAGGCCCAAC
70280723 GGGCCATATAAATGTGATTTGGGCCTAAT
1 GGGCCATATAAATGTGATTTGGGCCTAAT
* * *
70280752 GGGCCATATACAGGTGATTTGGGTCTAAT
1 GGGCCATATAAATGTGATTTGGGCCTAAT
70280781 GGGCCATAT
1 GGGCCATAT
70280790 GGATATGATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (29 bp):
GGGCCATATAAATGTGATTTGGGCCTAAT
Found at i:70286438 original size:47 final size:47
Alignment explanation
Indices: 70286381--70286510 Score: 156
Period size: 47 Copynumber: 2.8 Consensus size: 47
70286371 CACAATCGAT
*
70286381 AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATTC-CA
1 AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTAAC-TACTCTCA
* * * * * *
70286428 GAGTACCTATACTATGGCCTGTAGCCAAATCAAGGTAGCTCCTCTCA
1 AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTACTCTCA
* *
70286475 AAATACCTATATCATGG-TCGTAGCCAAATCAAGGTA
1 AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTA
70286511 TTATTTGCAC
Statistics
Matches: 69, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
46 20 0.29
47 49 0.71
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (47 bp):
AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTACTCTCA
Found at i:70291429 original size:25 final size:25
Alignment explanation
Indices: 70291393--70291449 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
70291383 AGCTATAAAT
*
70291393 GGTAAGCTCCTCTGAGCTGAATAAC
1 GGTAAGCCCCTCTGAGCTGAATAAC
* *
70291418 GGTAAGCCCCTCTGAGTTGAATAAT
1 GGTAAGCCCCTCTGAGCTGAATAAC
70291443 GGTAAGC
1 GGTAAGC
70291450 TCATACGAGC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (25 bp):
GGTAAGCCCCTCTGAGCTGAATAAC
Found at i:70291471 original size:25 final size:24
Alignment explanation
Indices: 70291443--70291496 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 24
70291433 GTTGAATAAT
* *
70291443 GGTAAGCTCATACGAGCTGAGTATC
1 GGTAAGCTCATAAGAGCT-AGAATC
70291468 GGTAAGCTCATAAGAGCTAGAATC
1 GGTAAGCTCATAAGAGCTAGAATC
70291492 GGTAA
1 GGTAA
70291497 CCCTAATGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (24 bp):
GGTAAGCTCATAAGAGCTAGAATC
Found at i:70291601 original size:13 final size:13
Alignment explanation
Indices: 70291583--70291607 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70291573 ATATGCGATC
70291583 AGTAATTATACAT
1 AGTAATTATACAT
70291596 AGTAATTATACA
1 AGTAATTATACA
70291608 ATCTGTGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (13 bp):
AGTAATTATACAT
Found at i:70294219 original size:28 final size:28
Alignment explanation
Indices: 70294179--70294232 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
70294169 ACATGATTTT
70294179 TTTTATCAATGTCATCTTCTTCAAAATC
1 TTTTATCAATGTCATCTTCTTCAAAATC
70294207 TTTTATCAATGTCATCTTCTTCAAAA
1 TTTTATCAATGTCATCTTCTTCAAAA
70294233 GCTTAAGGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.04, T:0.46
Consensus pattern (28 bp):
TTTTATCAATGTCATCTTCTTCAAAATC
Found at i:70298230 original size:9 final size:9
Alignment explanation
Indices: 70298218--70298274 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
70298208 TTTGATAGAC
70298218 ATGATATGT
1 ATGATATGT
*
70298227 ATGATATGCAC
1 ATGATATG--T
*
70298238 ATGACATGT
1 ATGATATGT
*
70298247 ATGATATGCAC
1 ATGATATG--T
70298258 ATGATATGT
1 ATGATATGT
70298267 ATGATATG
1 ATGATATG
70298275 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:70298241 original size:20 final size:20
Alignment explanation
Indices: 70298216--70298278 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
70298206 ATTTTGATAG
70298216 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
70298236 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
70298256 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70298276 ACA
1 ACA
70298279 CGAGATGGTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:70298358 original size:24 final size:24
Alignment explanation
Indices: 70298331--70298460 Score: 190
Period size: 24 Copynumber: 5.4 Consensus size: 24
70298321 GGAGGAAGTG
*
70298331 CAAAAGGGCTTATGCCTCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70298355 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
70298379 CAAAAGGGCTTATACCCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
*
70298402 CTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
70298426 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
70298450 TAAAAGAGGCT
1 CAAAAG-GGCT
70298461 AGGCCTCCAG
Statistics
Matches: 97, Mismatches: 7, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
23 21 0.22
24 72 0.74
25 4 0.04
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:70298422 original size:47 final size:47
Alignment explanation
Indices: 70298331--70298453 Score: 183
Period size: 47 Copynumber: 2.6 Consensus size: 47
70298321 GGAGGAAGTG
* *
70298331 CAAAAGGGCTTATGCCTCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTA-CTAAAGGGCTTATGCCCCAGTTAT
*
70298379 CAAAAGGGCTTATACCCCAGTTACTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTACTAAAGGGCTTATGCCCCAGTTAT
* * *
70298426 TAAAAGGGCTTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTACTAAA
70298454 AGAGGCTAGG
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
47 47 0.69
48 21 0.31
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTACTAAAGGGCTTATGCCCCAGTTAT
Found at i:70298710 original size:31 final size:31
Alignment explanation
Indices: 70298667--70298730 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
70298657 CGATTACAGT
*
70298667 AAAGTCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
70298698 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
70298729 AA
1 AA
70298731 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:70306303 original size:25 final size:25
Alignment explanation
Indices: 70306274--70306321 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
70306264 TTAGAACATG
* * *
70306274 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
70306299 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
70306322 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:70306372 original size:9 final size:9
Alignment explanation
Indices: 70306360--70306416 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
70306350 TTTGATAGAC
70306360 ATGATATGA
1 ATGATATGA
70306369 ATGATATGCA
1 ATGATATG-A
* *
70306379 CATGACATGT
1 -ATGATATGA
70306389 ATGATATGCA
1 ATGATATG-A
*
70306399 CATGATATGT
1 -ATGATATGA
70306409 ATGATATG
1 ATGATATG
70306417 CACACGAGAT
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
9 23 0.59
10 1 0.03
11 15 0.38
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33
Consensus pattern (9 bp):
ATGATATGA
Found at i:70306383 original size:20 final size:20
Alignment explanation
Indices: 70306358--70306420 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
70306348 ATTTTGATAG
*
70306358 ACATGATATGAATGATATGC
1 ACATGATATGTATGATATGC
*
70306378 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
70306398 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70306418 ACA
1 ACA
70306421 CGAGATGTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:70307449 original size:24 final size:24
Alignment explanation
Indices: 70306473--70307442 Score: 1870
Period size: 24 Copynumber: 40.4 Consensus size: 24
70306463 GGAGGAAGTG
70306473 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306497 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306521 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306545 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306569 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306593 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306617 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306641 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306665 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306689 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306713 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306737 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306761 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306785 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306809 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306833 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306857 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306881 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306905 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306929 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306953 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70306977 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70307001 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70307025 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70307049 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70307073 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70307097 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70307121 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70307145 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70307169 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70307193 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70307217 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70307241 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70307265 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70307289 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70307313 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70307337 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
70307361 CAAAAGGGCTTATACCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
70307385 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
70307408 TAAAAGGGCTTTTGCCTCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
70307432 TAAAAGAGGCT
1 CAAAAG-GGCT
70307443 AGGCCTCCAG
Statistics
Matches: 938, Mismatches: 6, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
23 21 0.02
24 913 0.97
25 4 0.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:70315012 original size:29 final size:29
Alignment explanation
Indices: 70314979--70315047 Score: 120
Period size: 29 Copynumber: 2.4 Consensus size: 29
70314969 TGCGTGTACC
*
70314979 ATGTGAAAAGGGATAGCTTCGGCTATCTA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
*
70315008 ATGTGAAAAGGGATAGCTTTGGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
70315037 ATGTGAAAAGG
1 ATGTGAAAAGG
70315048 AAAGGTATAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.26
Consensus pattern (29 bp):
ATGTGAAAAGGGATAGCTTCGGCTATCGA
Found at i:70315077 original size:33 final size:33
Alignment explanation
Indices: 70315040--70315217 Score: 171
Period size: 33 Copynumber: 5.5 Consensus size: 33
70315030 CTATCGAATG
**
70315040 TGAAAAGGAAAGGTATACCATGTGTATACCACA
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACA
** * ** * *
70315073 TGAAAAGGCTATGTGCACTTTGTGTGTA-CACT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACA
* ** * * *
70315105 TGGAAAGGTTA-GTATACTTTTTGTACACCATA
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACA
*
70315137 TGAAAAGGAAAGGTATACTTTGTGTATACCATA
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACA
* *
70315170 TGAAAAGGAATGGTATACTTTGTGTATACCACT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACA
*
70315203 TGAAAAGGAGAGGTA
1 TGAAAAGGAAAGGTA
70315218 CACTATATGA
Statistics
Matches: 115, Mismatches: 28, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
31 11 0.10
32 22 0.19
33 82 0.71
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (33 bp):
TGAAAAGGAAAGGTATACTTTGTGTATACCACA
Found at i:70315304 original size:33 final size:33
Alignment explanation
Indices: 70315060--70315342 Score: 159
Period size: 33 Copynumber: 8.7 Consensus size: 33
70315050 AGGTATACCA
* * * *
70315060 TGTGTATACCACATGAAAAGGCTATGTGCACTT
1 TGTGTGTACCACTTGAAAAGGATATGTACACTT
* * *
70315093 TGTGTGTA-CACTTGGAAAGGTTA-GTATACTT
1 TGTGTGTACCACTTGAAAAGGATATGTACACTT
* ** * * *
70315124 TTTGTACACCA-TATGAAAAGGAAAGGTATACTT
1 TGTGTGTACCACT-TGAAAAGGATATGTACACTT
* *
70315157 TGTGTATACCA-TATGAAAAGGA-ATGGTATACTT
1 TGTGTGTACCACT-TGAAAAGGATAT-GTACACTT
* * * *
70315190 TGTGTATACCACTTGAAAAGGAGAGGTACACTA
1 TGTGTGTACCACTTGAAAAGGATATGTACACTT
* * * * *
70315223 TATGAGTA-CACTTGAAAAGGTTATATGCACTT
1 TGTGTGTACCACTTGAAAAGGATATGTACACTT
** *
70315255 TGTGTGTATAAATTGGAAAAGG-TATGTACACTT
1 TGTGTGTACCACTT-GAAAAGGATATGTACACTT
* * * *
70315288 CGTGTGTACCACTTGGAAAGGGA-ATGTGCACCT
1 TGTGTGTACCACTT-GAAAAGGATATGTACACTT
* * *
70315321 TGAGTGTACAACTAGAAAAGGA
1 TGTGTGTACCACTTGAAAAGGA
70315343 AAGGTCCATC
Statistics
Matches: 196, Mismatches: 45, Indels: 19
0.75 0.17 0.07
Matches are distributed among these distances:
31 12 0.06
32 54 0.28
33 121 0.62
34 9 0.05
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (33 bp):
TGTGTGTACCACTTGAAAAGGATATGTACACTT
Found at i:70316076 original size:30 final size:30
Alignment explanation
Indices: 70316040--70316106 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
70316030 ACACGGGTAA
** * *
70316040 GACACACTTGCGTGTGTCTAGGCCGTTTGT
1 GACACACGAGCGTGTGTCTAGGCCATGTGT
70316070 GACACACGAGCGTGTGTCTAGGCCATGTGT
1 GACACACGAGCGTGTGTCTAGGCCATGTGT
70316100 GACACAC
1 GACACAC
70316107 CGACAGCCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.25
Consensus pattern (30 bp):
GACACACGAGCGTGTGTCTAGGCCATGTGT
Found at i:70317660 original size:46 final size:46
Alignment explanation
Indices: 70317610--70317785 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
70317600 TGGTTGAGCA
*
70317610 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
70317656 TCCGAACTCGTTGATTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
70317701 CATCTGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
70317749 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70317786 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.57
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70335083 original size:60 final size:60
Alignment explanation
Indices: 70334993--70335120 Score: 152
Period size: 60 Copynumber: 2.1 Consensus size: 60
70334983 TAGTGTTAAC
* * *
70334993 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATCAGAGTATAT
1 TGGGCC-TAGCCAATATCAATATCAATCTGGGCCATAGCCCTATTACAAGT-TCAGA-TATAT
* * * *
70335054 TGGGCCTAGCCAATATTAGTATCAATCTGGGCCGTAGCCCTATTACAAGTTGAGATATAT
1 TGGGCCTAGCCAATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTTCAGATATAT
70335114 TGGGCCT
1 TGGGCCT
70335121 TGGCCATATT
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
60 41 0.71
61 14 0.24
62 3 0.05
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (60 bp):
TGGGCCTAGCCAATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTTCAGATATAT
Found at i:70335176 original size:19 final size:20
Alignment explanation
Indices: 70335134--70335176 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
70335124 CCATATTAAC
** *
70335134 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
70335154 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
70335173 ACAG
1 ACAG
70335177 CCTCATATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.21
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:70337590 original size:37 final size:37
Alignment explanation
Indices: 70337548--70337643 Score: 101
Period size: 36 Copynumber: 2.6 Consensus size: 37
70337538 ATACAACAAA
*
70337548 TAATAATAATTTTCATAAAAATTTTCTAACATACATAC
1 TAATAATAATTTTCATAAAAATTTTATAACATA-ATAC
* * **
70337586 -AATAATATTTTTC-TAATAATTTTATTTCATAATAC
1 TAATAATAATTTTCATAAAAATTTTATAACATAATAC
70337621 TAATTAA-AA-TTTCATAAAAATTT
1 TAA-TAATAATTTTCATAAAAATTT
70337644 AAAATATTCG
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
35 8 0.17
36 25 0.52
37 15 0.31
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.45
Consensus pattern (37 bp):
TAATAATAATTTTCATAAAAATTTTATAACATAATAC
Found at i:70343568 original size:15 final size:15
Alignment explanation
Indices: 70343547--70343587 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
70343537 ATGACAGAGG
70343547 AATCCAAGATAAAGA
1 AATCCAAGATAAAGA
* * *
70343562 TATCCAAGGTACAGA
1 AATCCAAGATAAAGA
70343577 AATCCAAGATA
1 AATCCAAGATA
70343588 CCATATCATA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.51, C:0.17, G:0.15, T:0.17
Consensus pattern (15 bp):
AATCCAAGATAAAGA
Found at i:70345554 original size:37 final size:37
Alignment explanation
Indices: 70345490--70345565 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
70345480 TTACAAGTCA
70345490 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
70345527 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
70345564 AA
1 AA
70345566 CATCGACCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
36 4 0.11
37 30 0.86
38 1 0.03
ACGTcount: A:0.43, C:0.24, G:0.08, T:0.25
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:70352573 original size:999 final size:999
Alignment explanation
Indices: 70350637--70352633 Score: 3913
Period size: 999 Copynumber: 2.0 Consensus size: 999
70350627 GAATAAAGTG
70350637 ACAATAAAGAATAAATATCCGTTACCGCGTATTGATAATTTGTTTGATCAACTAAAGGGAGCCTC
1 ACAATAAAGAATAAATATCCGTTACCGCGTATTGATAATTTGTTTGATCAACTAAAGGGAGCCTC
70350702 AGTGTTTTCAAAGATAAATTTGAGATCGGGTTATTATCAGTTGCGAATTCGAGATTCAGATATAC
66 AGTGTTTTCAAAGATAAATTTGAGATCGGGTTATTATCAGTTGCGAATTCGAGATTCAGATATAC
70350767 CTAAAACTGCTTTCAGAACGAGATACGGTCACTACGAGTTTTTAGTGATGCCGTTTGGGCTCACT
131 CTAAAACTGCTTTCAGAACGAGATACGGTCACTACGAGTTTTTAGTGATGCCGTTTGGGCTCACT
70350832 AATGCCCCGGAGGTATTTATGGATTTGATGAATCAAATCTTCAGACCGTATTTGGATCGGTTTGT
196 AATGCCCCGGAGGTATTTATGGATTTGATGAATCAAATCTTCAGACCGTATTTGGATCGGTTTGT
70350897 AGTTGTGTTTATCGATGATATTTTGGTCTATTCGGAAAATGAAACCGAACATGCTGAGCACCTGA
261 AGTTGTGTTTATCGATGATATTTTGGTCTATTCGGAAAATGAAACCGAACATGCTGAGCACCTGA
70350962 GATTAGTGTTGCAGATTTTACGGGATAAGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGG
326 GATTAGTGTTGCAGATTTTACGGGATAAGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGG
70351027 TTAAGAGAGGTGAGCTTCTTGGGTCATATGGTATCTGCATCGGGTATTCGAGTTGATCTGAGCAA
391 TTAAGAGAGGTGAGCTTCTTGGGTCATATGGTATCTGCATCGGGTATTCGAGTTGATCTGAGCAA
70351092 AATTTCATCCATACTTAACTGGAAGCCTCCGAGAAACATTACTGAGGTTCGAAGCTTTTTGGGAC
456 AATTTCATCCATACTTAACTGGAAGCCTCCGAGAAACATTACTGAGGTTCGAAGCTTTTTGGGAC
70351157 TTGCCGGTTACTACAGACGGTTTGTAAAGGGTTTCTCGATGATAGCCACACCAATGACGAAACTA
521 TTGCCGGTTACTACAGACGGTTTGTAAAGGGTTTCTCGATGATAGCCACACCAATGACGAAACTA
70351222 CTTCAGAAAGATGTTAAGTTTGAATGGACAGAAAAATGTCAGAAAAGTTTCGATCAACTAAAAGC
586 CTTCAGAAAGATGTTAAGTTTGAATGGACAGAAAAATGTCAGAAAAGTTTCGATCAACTAAAAGC
70351287 TTATTTGACTGAAGCTCCAGTACTAGTGCAGCCCGAATCAGGCAAGGAGTTTTTCATCTACAATG
651 TTATTTGACTGAAGCTCCAGTACTAGTGCAGCCCGAATCAGGCAAGGAGTTTTTCATCTACAATG
70351352 ATGCATCCTTAATTGGGCTGGGTTGTGTATTGATGCAAGAAGGTCGAGTTGTAGCTTATGCGTCG
716 ATGCATCCTTAATTGGGCTGGGTTGTGTATTGATGCAAGAAGGTCGAGTTGTAGCTTATGCGTCG
70351417 AGACAATTGAAGTCACATGAGAAAAATTATCCAACCCATGATCTCGAATTAGCTGCCATCGTATT
781 AGACAATTGAAGTCACATGAGAAAAATTATCCAACCCATGATCTCGAATTAGCTGCCATCGTATT
*
70351482 CGCTTTGAAAATATGGCGACATTACTTATTTGGTGAGAAGTGCCATGTATTTTCGGATCACAAAA
846 CGCTTTGAAAATATGGCGACATTACTTATTTGGTGAGAAGTGCCATGTATATTCGGATCACAAAA
*
70351547 GTCTCAAATATTTGATGACCCAAAGAGACTTAAATCTACGACAAAGACGTTGGCTCGAGTTGTTA
911 GTCTCAAATATTTGATGACCCAAAGAGACTTAAATCTACGACAAAGACATTGGCTCGAGTTGTTA
70351612 AAAGATTATGAGCTTGTCATTGAC
976 AAAGATTATGAGCTTGTCATTGAC
70351636 ACAATAAAGAATAAATATCCGTTACCGCGTATTGATAATTTGTTTGATCAACTAAAGGGAGCCTC
1 ACAATAAAGAATAAATATCCGTTACCGCGTATTGATAATTTGTTTGATCAACTAAAGGGAGCCTC
70351701 AGTGTTTTCAAAGATAAATTTGAGATCGGGTTATTATCAGTTGCGAATTCGAGATTCAGATATAC
66 AGTGTTTTCAAAGATAAATTTGAGATCGGGTTATTATCAGTTGCGAATTCGAGATTCAGATATAC
70351766 CTAAAACTGCTTTCAGAACGAGATACGGTCACTACGAGTTTTTAGTGATGCCGTTTGGGCTCACT
131 CTAAAACTGCTTTCAGAACGAGATACGGTCACTACGAGTTTTTAGTGATGCCGTTTGGGCTCACT
70351831 AATGCCCCGGAGGTATTTATGGATTTGATGAATCAAATCTTCAGACCGTATTTGGATCGGTTTGT
196 AATGCCCCGGAGGTATTTATGGATTTGATGAATCAAATCTTCAGACCGTATTTGGATCGGTTTGT
70351896 AGTTGTGTTTATCGATGATATTTTGGTCTATTCGGAAAATGAAACCGAACATGCTGAGCACCTGA
261 AGTTGTGTTTATCGATGATATTTTGGTCTATTCGGAAAATGAAACCGAACATGCTGAGCACCTGA
70351961 GATTAGTGTTGCAGATTTTACGGGATAAGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGG
326 GATTAGTGTTGCAGATTTTACGGGATAAGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGG
70352026 TTAAGAGAGGTGAGCTTCTTGGGTCATATGGTATCTGCATCGGGTATTCGAGTTGATCTGAGCAA
391 TTAAGAGAGGTGAGCTTCTTGGGTCATATGGTATCTGCATCGGGTATTCGAGTTGATCTGAGCAA
70352091 AATTTCATCCATACTTAACTGGAAGCCTCCGAGAAACATTACTGAGGTTCGAAGCTTTTTGGGAC
456 AATTTCATCCATACTTAACTGGAAGCCTCCGAGAAACATTACTGAGGTTCGAAGCTTTTTGGGAC
70352156 TTGCCGGTTACTACAGACGGTTTGTAAAGGGTTTCTCGATGATAGCCACACCAATGACGAAACTA
521 TTGCCGGTTACTACAGACGGTTTGTAAAGGGTTTCTCGATGATAGCCACACCAATGACGAAACTA
70352221 CTTCAGAAAGATGTTAAGTTTGAATGGACAGAAAAATGTCAGAAAAGTTTCGATCAACTAAAAGC
586 CTTCAGAAAGATGTTAAGTTTGAATGGACAGAAAAATGTCAGAAAAGTTTCGATCAACTAAAAGC
70352286 TTATTTGACTGAAGCTCCAGTACTAGTGCAGCCCGAATCAGGCAAGGAGTTTTTCATCTACAATG
651 TTATTTGACTGAAGCTCCAGTACTAGTGCAGCCCGAATCAGGCAAGGAGTTTTTCATCTACAATG
70352351 ATGCATCCTTAATTGGGCTGGGTTGTGTATTGATGCAAGAAGGTCGAGTTGTAGCTTATGCGTCG
716 ATGCATCCTTAATTGGGCTGGGTTGTGTATTGATGCAAGAAGGTCGAGTTGTAGCTTATGCGTCG
70352416 AGACAATTGAAGTCACATGAGAAAAATTATCCAACCCATGATCTCGAATTAGCTGCCATCGTATT
781 AGACAATTGAAGTCACATGAGAAAAATTATCCAACCCATGATCTCGAATTAGCTGCCATCGTATT
70352481 CGCTTTGAAAATATGGCGACATTACTTATTTGGTGAGAAGTGCCATGTATATTCGGATCACAAAA
846 CGCTTTGAAAATATGGCGACATTACTTATTTGGTGAGAAGTGCCATGTATATTCGGATCACAAAA
** * * * * *
70352546 GTCTCAAATATTTGATGACTTAAAGAGACTTGAATCTGCGACAAAGGCATTGGCTTGAGTTGTTG
911 GTCTCAAATATTTGATGACCCAAAGAGACTTAAATCTACGACAAAGACATTGGCTCGAGTTGTTA
70352611 AAAGATTATGAGCTTGTCATTGA
976 AAAGATTATGAGCTTGTCATTGA
70352634 TTATCACCCG
Statistics
Matches: 989, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
999 989 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (999 bp):
ACAATAAAGAATAAATATCCGTTACCGCGTATTGATAATTTGTTTGATCAACTAAAGGGAGCCTC
AGTGTTTTCAAAGATAAATTTGAGATCGGGTTATTATCAGTTGCGAATTCGAGATTCAGATATAC
CTAAAACTGCTTTCAGAACGAGATACGGTCACTACGAGTTTTTAGTGATGCCGTTTGGGCTCACT
AATGCCCCGGAGGTATTTATGGATTTGATGAATCAAATCTTCAGACCGTATTTGGATCGGTTTGT
AGTTGTGTTTATCGATGATATTTTGGTCTATTCGGAAAATGAAACCGAACATGCTGAGCACCTGA
GATTAGTGTTGCAGATTTTACGGGATAAGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGG
TTAAGAGAGGTGAGCTTCTTGGGTCATATGGTATCTGCATCGGGTATTCGAGTTGATCTGAGCAA
AATTTCATCCATACTTAACTGGAAGCCTCCGAGAAACATTACTGAGGTTCGAAGCTTTTTGGGAC
TTGCCGGTTACTACAGACGGTTTGTAAAGGGTTTCTCGATGATAGCCACACCAATGACGAAACTA
CTTCAGAAAGATGTTAAGTTTGAATGGACAGAAAAATGTCAGAAAAGTTTCGATCAACTAAAAGC
TTATTTGACTGAAGCTCCAGTACTAGTGCAGCCCGAATCAGGCAAGGAGTTTTTCATCTACAATG
ATGCATCCTTAATTGGGCTGGGTTGTGTATTGATGCAAGAAGGTCGAGTTGTAGCTTATGCGTCG
AGACAATTGAAGTCACATGAGAAAAATTATCCAACCCATGATCTCGAATTAGCTGCCATCGTATT
CGCTTTGAAAATATGGCGACATTACTTATTTGGTGAGAAGTGCCATGTATATTCGGATCACAAAA
GTCTCAAATATTTGATGACCCAAAGAGACTTAAATCTACGACAAAGACATTGGCTCGAGTTGTTA
AAAGATTATGAGCTTGTCATTGAC
Found at i:70356139 original size:40 final size:40
Alignment explanation
Indices: 70356084--70356307 Score: 306
Period size: 40 Copynumber: 5.5 Consensus size: 40
70356074 TATTCGGATG
70356084 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
70356124 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
70356167 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
70356207 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
70356247 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
70356287 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
70356308 ATACTTGGGT
Statistics
Matches: 165, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 114 0.69
41 1 0.01
43 37 0.22
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:70356227 original size:83 final size:80
Alignment explanation
Indices: 70356088--70356307 Score: 302
Period size: 83 Copynumber: 2.7 Consensus size: 80
70356078 CGGATGATAT
* **
70356088 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
70356153 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
70356171 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
70356236 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
70356251 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
70356308 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
79 16 0.13
80 45 0.35
81 2 0.02
83 64 0.50
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:70358233 original size:42 final size:42
Alignment explanation
Indices: 70358176--70358260 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 42
70358166 ACTAGACTCA
* * *
70358176 TTAAGATTTAGTTCCATATTTTATTCAGTCTTTAATTCAATT
1 TTAAGATTTAATTCCAAATTTTATTCAGTCTTTAATTAAATT
* * *
70358218 TTAATATTTAATTCCAAATTTTATTCGGTTTTTAATTAAATT
1 TTAAGATTTAATTCCAAATTTTATTCAGTCTTTAATTAAATT
70358260 T
1 T
70358261 CCACAATTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.31, C:0.09, G:0.06, T:0.54
Consensus pattern (42 bp):
TTAAGATTTAATTCCAAATTTTATTCAGTCTTTAATTAAATT
Found at i:70361701 original size:21 final size:21
Alignment explanation
Indices: 70361657--70361697 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
70361647 TGTGACCCCT
*
70361657 GTTTGTTGAAAAATTTTCTAA
1 GTTTGTTGAAAAATTCTCTAA
*
70361678 GTTT-TTGTAAAATTCTCTAA
1 GTTTGTTGAAAAATTCTCTAA
70361698 AGTTCTCAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.32, C:0.07, G:0.12, T:0.49
Consensus pattern (21 bp):
GTTTGTTGAAAAATTCTCTAA
Found at i:70362085 original size:24 final size:24
Alignment explanation
Indices: 70362058--70362104 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
70362048 ACTGAGGGTG
70362058 GAGAT-AAAGAAGAAGACGACGGTA
1 GAGATCAAA-AAGAAGACGACGGTA
* *
70362082 GAGATCAAAATGAAGATGACGGT
1 GAGATCAAAAAGAAGACGACGGT
70362105 GGGAATGAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.47, C:0.09, G:0.32, T:0.13
Consensus pattern (24 bp):
GAGATCAAAAAGAAGACGACGGTA
Found at i:70364120 original size:62 final size:62
Alignment explanation
Indices: 70364019--70364138 Score: 161
Period size: 62 Copynumber: 1.9 Consensus size: 62
70364009 GAAATATGGC
* * *
70364019 ACTAAGTGTGCAAGGGATAAAGTGATGGCACTAAGTGTGCGATACGTCAC-AAGATTTTAGT
1 ACTAAGTGTGCAAGGGATAAAGTAACGGCACTAAGTGTGCGACACGTCACAAAGATTTTAGT
* * * *
70364080 ACTAAGTGTGCAAGATGTTAATGTAACGGCACTAAGTGTGCGACACGTTACAAAGATTT
1 ACTAAGTGTGCAAG-GGATAAAGTAACGGCACTAAGTGTGCGACACGTCACAAAGATTT
70364139 AGCATTGAGT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
61 14 0.28
62 29 0.58
63 7 0.14
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (62 bp):
ACTAAGTGTGCAAGGGATAAAGTAACGGCACTAAGTGTGCGACACGTCACAAAGATTTTAGT
Found at i:70371782 original size:18 final size:18
Alignment explanation
Indices: 70371761--70371799 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
70371751 GATTGAGAGT
* *
70371761 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
*
70371779 GAAAAGAAATTTGAAAAA
1 GAAAAGAAATGTGAAAAA
70371797 GAA
1 GAA
70371800 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.23, T:0.13
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:70376552 original size:13 final size:13
Alignment explanation
Indices: 70376534--70376559 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70376524 TATTATTAAT
70376534 ATTATTTTGTGTG
1 ATTATTTTGTGTG
70376547 ATTATTTTGTGTG
1 ATTATTTTGTGTG
70376560 CATTTGATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (13 bp):
ATTATTTTGTGTG
Found at i:70378313 original size:41 final size:41
Alignment explanation
Indices: 70378247--70378456 Score: 156
Period size: 41 Copynumber: 5.1 Consensus size: 41
70378237 ATAAGGTGGT
* *
70378247 TGAATGTAATACAGACTTTATGTCTAGCAGGCTTGATGCCGG
1 TGAA-GTAATTCAGACTTTATGTCTAGCAGGCTTAATGCCGG
* *
70378289 TGAAGTAATTCAGACTTTACGTCTAGCATGCTTAATGCCGG
1 TGAAGTAATTCAGACTTTATGTCTAGCAGGCTTAATGCCGG
* ** *
70378330 TG-A-TACATTTCGGACTAAATGTCTAGCAGGCTAAATGCCGG
1 TGAAGTA-A-TTCAGACTTTATGTCTAGCAGGCTTAATGCCGG
* * * * * * * *
70378371 TGTACTAAATCAGGCTTTAAGCCTAGCAGGCTAAATGTCGG
1 TGAAGTAATTCAGACTTTATGTCTAGCAGGCTTAATGCCGG
* * * * * * *
70378412 TGTACTGAA-TCAGGCTTTAAGCCTAGTAGGCTAAATGCCGG
1 TGAAGT-AATTCAGACTTTATGTCTAGCAGGCTTAATGCCGG
70378453 TGAA
1 TGAA
70378457 TCTGTTTTTT
Statistics
Matches: 142, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
39 2 0.01
40 2 0.01
41 128 0.90
42 8 0.06
43 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (41 bp):
TGAAGTAATTCAGACTTTATGTCTAGCAGGCTTAATGCCGG
Found at i:70381868 original size:21 final size:21
Alignment explanation
Indices: 70381842--70381901 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
70381832 ACACGCCAAT
70381842 AGAAGCTCATAAGAGCTGAAC
1 AGAAGCTCATAAGAGCTGAAC
* * *
70381863 AGAAGCACAAAAGAGCTAAAC
1 AGAAGCTCATAAGAGCTGAAC
*
70381884 AAAAGCTC-TAAAGAGCTG
1 AGAAGCTCAT-AAGAGCTG
70381902 GTCCACCCGA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.48, C:0.18, G:0.22, T:0.12
Consensus pattern (21 bp):
AGAAGCTCATAAGAGCTGAAC
Found at i:70396692 original size:42 final size:42
Alignment explanation
Indices: 70396612--70396693 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
70396602 CATTTTCTCT
* **
70396612 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
70396654 ATGCCATAGCCCAGA-TATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGCCCA-ACTATGGTCTTACACA-TATGCACATAT
70396694 CACACCAATG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 32 0.91
43 3 0.09
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
Found at i:70399356 original size:85 final size:85
Alignment explanation
Indices: 70399212--70399409 Score: 319
Period size: 85 Copynumber: 2.4 Consensus size: 85
70399202 ATCCATTACT
* * *
70399212 CGGTGGATTCAACACTTAGCAACCACC-TTAAATTTAGTGATACGGGGAATCAGCACATAGCAAC
1 CGGTGGAATCAACACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAACACATAGCAAC
70399276 CCCTTTCACAATCAAAGATA
66 CCCTTTCACAATCAAAGATA
* *
70399296 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAACACATAGCAAC
1 CGGTGGAATCAACACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAACACATAGCAAC
* *
70399361 CCCTTTTACAATCAAATATA
66 CCCTTTCACAATCAAAGATA
70399381 CGGTGGAATCAACACTTAGCAACC-CCTTT
1 CGGTGGAATCAACACTTAGCAACCACCTTT
70399410 CACATAAAAT
Statistics
Matches: 105, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
84 30 0.29
85 75 0.71
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (85 bp):
CGGTGGAATCAACACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAACACATAGCAAC
CCCTTTCACAATCAAAGATA
Done.