Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 207 of 297
Found at i:70399359 original size:42 final size:42
Alignment explanation
Indices: 70399212--70399409 Score: 208
Period size: 43 Copynumber: 4.7 Consensus size: 42
70399202 ATCCATTACT
* * *
70399212 CGGTGGATTCAACACTTAGCAACCACC-TTA-AATTTAGTGATA
1 CGGTGGAATCAACACTTAGCAACC-CCTTTACAA-TCAATGATA
* * *
70399254 CGG-GGAATCAGCACATAGCAACCCCTTTCACAATCAAAGATA
1 CGGTGGAATCAACACTTAGCAACCCCTTT-ACAATCAATGATA
* * * *
70399296 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATA
1 CGGTGGAATCAACACTTAGCAACC-CCTTTACAATCAATGATA
*
70399339 CGG-GGAATCAACACATAGCAACCCCTTTTACAATCAAAT-ATA
1 CGGTGGAATCAACACTTAGCAACCCC-TTTACAATC-AATGATA
70399381 CGGTGGAATCAACACTTAGCAACCCCTTT
1 CGGTGGAATCAACACTTAGCAACCCCTTT
70399410 CACATAAAAT
Statistics
Matches: 131, Mismatches: 17, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
40 2 0.02
41 21 0.16
42 47 0.36
43 56 0.43
44 5 0.04
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (42 bp):
CGGTGGAATCAACACTTAGCAACCCCTTTACAATCAATGATA
Found at i:70407135 original size:8 final size:8
Alignment explanation
Indices: 70407122--70407153 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
70407112 TTATCAGCTC
70407122 TTATTATT
1 TTATTATT
70407130 TTATTATT
1 TTATTATT
70407138 TTATTATT
1 TTATTATT
70407146 TTATTATT
1 TTATTATT
70407154 CCAAATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (8 bp):
TTATTATT
Found at i:70407298 original size:47 final size:47
Alignment explanation
Indices: 70407246--70407336 Score: 155
Period size: 47 Copynumber: 1.9 Consensus size: 47
70407236 TATTTAGATT
*
70407246 AATTAGAGTTCTAGTATACGTAAGAGTTTTATTTATATTTATTTTGC
1 AATTAGAGTTCTAGTATACGTAAGAGTTTTATTTAGATTTATTTTGC
* *
70407293 AATTAGAGTTCTAGTATACTTAAGATTTTTATTTAGATTTATTT
1 AATTAGAGTTCTAGTATACGTAAGAGTTTTATTTAGATTTATTT
70407337 AGCTAGTCTA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.31, C:0.05, G:0.13, T:0.51
Consensus pattern (47 bp):
AATTAGAGTTCTAGTATACGTAAGAGTTTTATTTAGATTTATTTTGC
Found at i:70407700 original size:13 final size:13
Alignment explanation
Indices: 70407684--70407733 Score: 63
Period size: 13 Copynumber: 4.2 Consensus size: 13
70407674 TCTATTTTAA
70407684 TTATTTTAGTTAT
1 TTATTTTAGTTAT
70407697 TTATTTTA---A-
1 TTATTTTAGTTAT
70407706 TTATTTTAGTTAT
1 TTATTTTAGTTAT
*
70407719 TTATTTTAATTAT
1 TTATTTTAGTTAT
70407732 TT
1 TT
70407734 TATATAACTT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
9 8 0.25
10 1 0.03
12 1 0.03
13 22 0.69
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (13 bp):
TTATTTTAGTTAT
Found at i:70407701 original size:22 final size:22
Alignment explanation
Indices: 70407666--70407735 Score: 124
Period size: 22 Copynumber: 3.2 Consensus size: 22
70407656 TAATCGTAGA
70407666 TTTA-TTATTCTATTTTAATTAT
1 TTTAGTTATT-TATTTTAATTAT
70407688 TTTAGTTATTTATTTTAATTAT
1 TTTAGTTATTTATTTTAATTAT
70407710 TTTAGTTATTTATTTTAATTAT
1 TTTAGTTATTTATTTTAATTAT
70407732 TTTA
1 TTTA
70407736 TATAACTTGG
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
22 42 0.89
23 5 0.11
ACGTcount: A:0.27, C:0.01, G:0.03, T:0.69
Consensus pattern (22 bp):
TTTAGTTATTTATTTTAATTAT
Found at i:70411381 original size:24 final size:23
Alignment explanation
Indices: 70411358--70411401 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
70411348 AACATCTTTA
70411358 ACTATTTTGATTAAAAATATTTT
1 ACTATTTTGATTAAAAATATTTT
* **
70411381 ATTATTTTTTTTAAAAATATT
1 ACTATTTTGATTAAAAATATT
70411402 ATTTTAACAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (23 bp):
ACTATTTTGATTAAAAATATTTT
Found at i:70411923 original size:16 final size:16
Alignment explanation
Indices: 70411902--70411958 Score: 78
Period size: 16 Copynumber: 3.6 Consensus size: 16
70411892 TTTGGTTCGC
*
70411902 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
* *
70411918 TGTATTAGATTAGAGG
1 TGTAATGGATTAGAGG
*
70411934 TGTAATGGAATAGAGG
1 TGTAATGGATTAGAGG
70411950 TGTAATGGA
1 TGTAATGGA
70411959 AAAGCTGTGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.33
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:70411971 original size:16 final size:16
Alignment explanation
Indices: 70411929--70411962 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
70411919 GTATTAGATT
*
70411929 AGAGGTGTAATGGAAT
1 AGAGGTGTAATGGAAA
70411945 AGAGGTGTAATGGAAA
1 AGAGGTGTAATGGAAA
70411961 AG
1 AG
70411963 CTGTGTAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.38, T:0.21
Consensus pattern (16 bp):
AGAGGTGTAATGGAAA
Found at i:70412225 original size:18 final size:17
Alignment explanation
Indices: 70412204--70412238 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
70412194 TTATTATTAA
*
70412204 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
70412222 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
70412239 TCTTAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:70418456 original size:107 final size:107
Alignment explanation
Indices: 70418270--70418491 Score: 399
Period size: 107 Copynumber: 2.1 Consensus size: 107
70418260 TGAAGTTTTA
* *
70418270 AAAGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTC
1 AAAGGATATTTGGCCATTTAGTCGAACGAGAAATCGAAACCCAACACGTTAGGGCACGTTTTCTC
*
70418335 GAATTTCCTAACGCAAAACATTGCCTCGTTTTGAAATTATTG
66 GAATTTCCAAACGCAAAACATTGCCTCGTTTTGAAATTATTG
* *
70418377 AAAGGATATTTGGCCATTTGGTTGAACGAGAAATCGAAACCCAACACGTTAGGGCACGTTTTCTC
1 AAAGGATATTTGGCCATTTAGTCGAACGAGAAATCGAAACCCAACACGTTAGGGCACGTTTTCTC
70418442 GAATTTCCAAACGCAAAACATTGCCTCGTTTTGAAATTATTG
66 GAATTTCCAAACGCAAAACATTGCCTCGTTTTGAAATTATTG
70418484 AAAGGATA
1 AAAGGATA
70418492 AAATACAATG
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
107 110 1.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (107 bp):
AAAGGATATTTGGCCATTTAGTCGAACGAGAAATCGAAACCCAACACGTTAGGGCACGTTTTCTC
GAATTTCCAAACGCAAAACATTGCCTCGTTTTGAAATTATTG
Found at i:70421362 original size:13 final size:13
Alignment explanation
Indices: 70421344--70421389 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
70421334 TTGGCCTCTC
70421344 CTTTTTC-TCTTTT
1 CTTTTTCGT-TTTT
70421357 CTTTTTCGTTTTT
1 CTTTTTCGTTTTT
70421370 CTTTTT-GTTTCTT
1 CTTTTTCGTTT-TT
*
70421383 TTTTTTC
1 CTTTTTC
70421390 AAGTGAAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
12 4 0.14
13 24 0.83
14 1 0.03
ACGTcount: A:0.00, C:0.17, G:0.04, T:0.78
Consensus pattern (13 bp):
CTTTTTCGTTTTT
Found at i:70421840 original size:1 final size:1
Alignment explanation
Indices: 70421824--70421894 Score: 70
Period size: 1 Copynumber: 71.0 Consensus size: 1
70421814 CCGGTAGATG
* * * * * * * *
70421824 TTTTTTCTTTTGTTTTTGTTTTTTTTTTGTTTTTTTGTTTTTTTTTTGTTTTTTGTTTTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
70421889 TTTTTT
1 TTTTTT
70421895 GCCTCCACTG
Statistics
Matches: 54, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 54 1.00
ACGTcount: A:0.00, C:0.01, G:0.10, T:0.89
Consensus pattern (1 bp):
T
Found at i:70421845 original size:18 final size:18
Alignment explanation
Indices: 70421822--70421895 Score: 107
Period size: 18 Copynumber: 4.1 Consensus size: 18
70421812 CCCCGGTAGA
70421822 TGTTTTTTCTTTTG-TTTT
1 TGTTTTTT-TTTTGTTTTT
70421840 TGTTTTTTTTTTGTTTTTT
1 TGTTTTTTTTTTG-TTTTT
70421859 TGTTTTTTTTTTGTTTTT
1 TGTTTTTTTTTTGTTTTT
*
70421877 TGTTTTTTGTTT-TTTTT
1 TGTTTTTTTTTTGTTTTT
70421894 TG
1 TG
70421896 CCTCCACTGA
Statistics
Matches: 53, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
17 12 0.23
18 24 0.45
19 17 0.32
ACGTcount: A:0.00, C:0.01, G:0.12, T:0.86
Consensus pattern (18 bp):
TGTTTTTTTTTTGTTTTT
Found at i:70421848 original size:19 final size:18
Alignment explanation
Indices: 70421822--70421895 Score: 89
Period size: 17 Copynumber: 4.1 Consensus size: 18
70421812 CCCCGGTAGA
*
70421822 TGTTTTTTCTTTTGTTTT
1 TGTTTTTTTTTTTGTTTT
70421840 TG-TTTTTTTTTTGTTTT
1 TGTTTTTTTTTTTGTTTT
*
70421857 TTTGTTTTTTTTTTGTTTTT
1 TGT-TTTTTTTTTTG-TTTT
*
70421877 TGTTTTTTGTTTT-TTTT
1 TGTTTTTTTTTTTGTTTT
70421894 TG
1 TG
70421896 CCTCCACTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
17 21 0.43
18 2 0.04
19 20 0.41
20 6 0.12
ACGTcount: A:0.00, C:0.01, G:0.12, T:0.86
Consensus pattern (18 bp):
TGTTTTTTTTTTTGTTTT
Found at i:70421865 original size:25 final size:24
Alignment explanation
Indices: 70421831--70421895 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 24
70421821 ATGTTTTTTC
70421831 TTTTGTTTTTGTTTT-TTTTTTGTTT
1 TTTTGTTTTT-TTTTGTTTTTTG-TT
70421856 TTTTGTTTTTTTTTTGTTTTTTGTT
1 TTTTG-TTTTTTTTTGTTTTTTGTT
70421881 TTTTGTTTTTTTTTG
1 TTTTGTTTTTTTTTG
70421896 CCTCCACTGA
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.26
25 16 0.42
26 12 0.32
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (24 bp):
TTTTGTTTTTTTTTGTTTTTTGTT
Found at i:70424915 original size:107 final size:107
Alignment explanation
Indices: 70424729--70424946 Score: 400
Period size: 107 Copynumber: 2.0 Consensus size: 107
70424719 GTTTTAAAAA
* *
70424729 GATATTTGGCTATTTAGTCGAATGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGAAT
1 GATATTTGGCCATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGAAT
*
70424794 TTCCTAACGCAAAACATTGCCTCGTTTTGAAATTATTGAAAG
66 TTCCAAACGCAAAACATTGCCTCGTTTTGAAATTATTGAAAG
*
70424836 GATATTTGGCCATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGAAT
1 GATATTTGGCCATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGAAT
70424901 TTCCAAACGCAAAACATTGCCTCGTTTTGAAATTATTGAAAG
66 TTCCAAACGCAAAACATTGCCTCGTTTTGAAATTATTGAAAG
70424943 GATA
1 GATA
70424947 AAATACAATG
Statistics
Matches: 107, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
107 107 1.00
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.29
Consensus pattern (107 bp):
GATATTTGGCCATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGAAT
TTCCAAACGCAAAACATTGCCTCGTTTTGAAATTATTGAAAG
Found at i:70426910 original size:16 final size:16
Alignment explanation
Indices: 70426879--70426915 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
70426869 TTTTGAATAA
70426879 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
70426895 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
70426911 TATTA
1 TATTA
70426916 AAATAGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:70426967 original size:22 final size:22
Alignment explanation
Indices: 70426923--70426982 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
70426913 TTAAAATAGA
*
70426923 ATTAAAATATTAAA-TA-ATTT
1 ATTAAAATAATAAATTATATTT
70426943 ATTAAAATAATAAATTATATTT
1 ATTAAAATAATAAATTATATTT
* * *
70426965 ATTATATTAATAATTTAT
1 ATTAAAATAATAAATTAT
70426983 TATATGACAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.38
21 2 0.06
22 19 0.56
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTAAAATAATAAATTATATTT
Found at i:70428033 original size:17 final size:18
Alignment explanation
Indices: 70428006--70428041 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
70427996 TATTAAAATA
*
70428006 TTAAAATAAATTATATAT
1 TTAAAATAAATGATATAT
70428024 TTAAAA-AAATGATATAT
1 TTAAAATAAATGATATAT
70428041 T
1 T
70428042 CAAATCATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (18 bp):
TTAAAATAAATGATATAT
Found at i:70434397 original size:47 final size:49
Alignment explanation
Indices: 70434275--70434454 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 49
70434265 TGTAACCCGC
* * * *
70434275 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
70434321 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
70434371 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTC-ACAT
*
70434415 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
70434455 TCAACCATCC
Statistics
Matches: 114, Mismatches: 7, Indels: 22
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.32
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:70434443 original size:94 final size:93
Alignment explanation
Indices: 70434283--70434454 Score: 308
Period size: 94 Copynumber: 1.8 Consensus size: 93
70434273 GCCCATAAGT
* *
70434283 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70434348 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
70434376 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCG-CATCCATAAGTGAACTCGGACTCAACTCA
70434441 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
70434455 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
93 32 0.43
94 43 0.57
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70447667 original size:16 final size:17
Alignment explanation
Indices: 70447646--70447680 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
70447636 TAATGTCTAG
70447646 GAAAATTA-TTAATTGA
1 GAAAATTAGTTAATTGA
70447662 GAAAATTAGTTTAATTGA
1 GAAAATTAG-TTAATTGA
70447680 G
1 G
70447681 GGGTTAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
18 9 0.53
ACGTcount: A:0.46, C:0.00, G:0.17, T:0.37
Consensus pattern (17 bp):
GAAAATTAGTTAATTGA
Found at i:70455271 original size:176 final size:176
Alignment explanation
Indices: 70454901--70455392 Score: 806
Period size: 176 Copynumber: 2.8 Consensus size: 176
70454891 GTGACATCGG
* *
70454901 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGTAGATCGAAAATGGCGAGTCTTATC
1 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATAGAAAATGGCGAGTCTTATC
*
70454966 TCCATGTATCGACTATGGAGCAGATTTTAGCCACCAAGCCTTATCTCTCTGAAGTTGCAGAGAGC
66 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACC-AGCCTTATCTCTCTGAAGTTGCAGAGAGC
70455031 AGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGAC
130 AGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGAC
* * *
70455078 TGAAAATTACAGATCTTATCTCCATGTATCGGTTATGGAACAGATTGAAAATGGCGAGTCTTATC
1 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATAGAAAATGGCGAGTCTTATC
* *
70455143 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAAGTTGTAGAGAGCA
66 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTTGCAGAGAGCA
70455208 GGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGAC
131 GGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGAC
* * * *
70455254 TGAAAATTACAGATCTTATCTCTATGTATTGGCTATGGAGCAGATAAAAAATGACGAGTCTTATC
1 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATAGAAAATGGCGAGTCTTATC
* * * *
70455319 TCCATATATCGGCTATGGAGCAGATTTTAGCCA-CAGACCTTATCTCCCTGAAGTTGCAGTGGAA
66 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAG-CCTTATCTCTCTGAAGTTGCAG-AGAG
70455383 CAGGTTGAAG
129 CAGGTTGAAG
70455393 TCAAACATTA
Statistics
Matches: 293, Mismatches: 20, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
175 3 0.01
176 183 0.62
177 107 0.37
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (176 bp):
TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATAGAAAATGGCGAGTCTTATC
TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTTGCAGAGAGCA
GGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGAC
Found at i:70461720 original size:21 final size:20
Alignment explanation
Indices: 70461674--70461721 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
70461664 TTTTTATGAT
* *
70461674 TTTTAAAAAAATTTCATACG
1 TTTTATAAAAATTTAATACG
*
70461694 TATTTATAAAAATTTAAATATG
1 T-TTTATAAAAATTT-AATACG
70461716 TTTTAT
1 TTTTAT
70461722 TAATTTTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (20 bp):
TTTTATAAAAATTTAATACG
Found at i:70461750 original size:28 final size:30
Alignment explanation
Indices: 70461696--70461751 Score: 80
Period size: 28 Copynumber: 1.9 Consensus size: 30
70461686 TTCATACGTA
**
70461696 TTTATAAAAATTTAAATATGTTTTATTAAT
1 TTTATAAAAATTTAAATATAATTTATTAAT
70461726 TTTAT-AAAATTT-AATATAATTTATTA
1 TTTATAAAAATTTAAATATAATTTATTA
70461752 GATTCATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 12 0.50
29 7 0.29
30 5 0.21
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (30 bp):
TTTATAAAAATTTAAATATAATTTATTAAT
Found at i:70461854 original size:18 final size:18
Alignment explanation
Indices: 70461831--70461877 Score: 67
Period size: 19 Copynumber: 2.6 Consensus size: 18
70461821 TTGATAATTT
*
70461831 TTTTTTATTTTTTTGTAA
1 TTTTTTATTTTTTTCTAA
*
70461849 TTTTTTAATTTTTTTCTGA
1 TTTTTT-ATTTTTTTCTAA
70461868 TTTTTTATTT
1 TTTTTTATTT
70461878 GAAATTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.79
Consensus pattern (18 bp):
TTTTTTATTTTTTTCTAA
Found at i:70461862 original size:21 final size:22
Alignment explanation
Indices: 70461819--70461876 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 22
70461809 TATTTAATAA
*
70461819 TTTTGATAATTTTTTTTTATTT
1 TTTTGATAATTTTTTATTATTT
70461841 TTTTG-TAATTTTTTA--ATTT
1 TTTTGATAATTTTTTATTATTT
* *
70461860 TTTT-CTGATTTTTTATT
1 TTTTGATAATTTTTTATT
70461877 TGAAATTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
19 17 0.55
21 9 0.29
22 5 0.16
ACGTcount: A:0.17, C:0.02, G:0.05, T:0.76
Consensus pattern (22 bp):
TTTTGATAATTTTTTATTATTT
Found at i:70465335 original size:24 final size:22
Alignment explanation
Indices: 70465308--70465352 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
70465298 TGTGTCCGTA
70465308 TTATATATTATAAAAATAATATAC
1 TTATATA-TA-AAAAATAATATAC
* *
70465332 TTATTTATAAAAAATATTATA
1 TTATATATAAAAAATAATATA
70465353 GTGTTTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 2 0.11
24 6 0.32
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
TTATATATAAAAAATAATATAC
Found at i:70466370 original size:5 final size:5
Alignment explanation
Indices: 70466360--70466391 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
70466350 TTGTGTGTTC
70466360 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
70466392 TTCACAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:70466374 original size:9 final size:9
Alignment explanation
Indices: 70466360--70466390 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
70466350 TTGTGTGTTC
70466360 TTTATTTTA
1 TTTATTTTA
70466369 TTTATTTTA
1 TTTATTTTA
70466378 TTTTATTTTA
1 -TTTATTTTA
70466388 TTT
1 TTT
70466391 TTTCACAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:70469535 original size:47 final size:47
Alignment explanation
Indices: 70469426--70469536 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
70469416 CCGGGATAAG
*
70469426 CACATAGTGCTTCATCGGAACAAATCTGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCTGGAACTTTAACAGTATAGTA
* * *
70469473 CACAAAGTACTTCATCGGAACAAATCTGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCTGGAACTTTAACAGTA-TAGTA
70469520 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
70469537 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCTGGAACTTTAACAGTATAGTA
Found at i:70481570 original size:19 final size:18
Alignment explanation
Indices: 70481526--70481571 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
70481516 GCTAATTTCT
*
70481526 AAAATTAAATTGAGAAAA
1 AAAATAAAATTGAGAAAA
*
70481544 AAATATAAAATTTAGAAAA
1 AAA-ATAAAATTGAGAAAA
70481563 ATAAATAAA
1 A-AAATAAA
70481572 TTATTTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 3 0.12
19 19 0.79
20 2 0.08
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.24
Consensus pattern (18 bp):
AAAATAAAATTGAGAAAA
Found at i:70495970 original size:39 final size:39
Alignment explanation
Indices: 70495926--70496003 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
70495916 AGTTTCAATC
*
70495926 CTCACTAAACTATAATTGTTAAATTTTGTTATCTTCAAA
1 CTCACTAAACTATAATTCTTAAATTTTGTTATCTTCAAA
*
70495965 CTCACTAAACTATAATTCTTAAATTTTGTTATTTTCAAA
1 CTCACTAAACTATAATTCTTAAATTTTGTTATCTTCAAA
70496004 ATCAGATGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.36, C:0.15, G:0.04, T:0.45
Consensus pattern (39 bp):
CTCACTAAACTATAATTCTTAAATTTTGTTATCTTCAAA
Found at i:70504063 original size:28 final size:28
Alignment explanation
Indices: 70504000--70504150 Score: 205
Period size: 28 Copynumber: 5.4 Consensus size: 28
70503990 ATATTAAGTC
* *
70504000 CGCACACTCAATGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
70504027 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
70504055 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
70504083 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
70504111 TGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
70504140 CGCACACTTAG
1 CGCACACTTAG
70504151 CGACAATCTC
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 21 0.19
28 76 0.68
29 15 0.13
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70509097 original size:13 final size:14
Alignment explanation
Indices: 70509076--70509108 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
70509066 TTTATTAATG
70509076 AAATATATTAAA-AT
1 AAAT-TATTAAATAT
70509090 AAATTATTAAATAT
1 AAATTATTAAATAT
70509104 AAATT
1 AAATT
70509109 TATATTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
AAATTATTAAATAT
Found at i:70509271 original size:9 final size:9
Alignment explanation
Indices: 70509256--70509298 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
70509246 CTATGTCCCA
70509256 ATTTCATAT
1 ATTTCATAT
*
70509265 TTTTCATAT
1 ATTTCATAT
*
70509274 TTTTCATAT
1 ATTTCATAT
70509283 ATTTCATAT
1 ATTTCATAT
70509292 ATTTCAT
1 ATTTCAT
70509299 TAACTTATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.28, C:0.12, G:0.00, T:0.60
Consensus pattern (9 bp):
ATTTCATAT
Found at i:70513005 original size:4 final size:4
Alignment explanation
Indices: 70512998--70513067 Score: 68
Period size: 4 Copynumber: 17.5 Consensus size: 4
70512988 CGCATGTACT
* * ** ** * *
70512998 TACA TACA TATA TATA TACA TATG TACA TACA TATG TACT TATA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
70513046 TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TACA TA
70513068 TACATATACA
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
4 53 1.00
ACGTcount: A:0.46, C:0.17, G:0.03, T:0.34
Consensus pattern (4 bp):
TACA
Found at i:70513020 original size:6 final size:6
Alignment explanation
Indices: 70513001--70513887 Score: 1643
Period size: 6 Copynumber: 147.2 Consensus size: 6
70512991 ATGTACTTAC
* * * *
70513001 ATACAT ATATAT ATACAT ATGTACAT ACATAT GTACTTAT ATACAT ACATACAT
1 ATACAT ATACAT ATACAT A--TACAT ATACAT ATAC--AT ATACAT --ATACAT
* * *
70513055 ACATAC ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
70513103 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
70513151 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
70513199 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
70513247 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
70513295 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
70513343 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
70513391 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
70513439 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
70513487 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
70513535 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
70513583 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
70513631 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
70513679 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
70513727 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
70513775 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
70513823 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
70513871 ATACAT AT--AT ATACAT A
1 ATACAT ATACAT ATACAT A
70513888 CATACACACA
Statistics
Matches: 859, Mismatches: 14, Indels: 16
0.97 0.02 0.02
Matches are distributed among these distances:
4 4 0.00
6 838 0.98
8 17 0.02
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
ATACAT
Found at i:70513025 original size:8 final size:8
Alignment explanation
Indices: 70513001--70514200 Score: 256
Period size: 8 Copynumber: 150.9 Consensus size: 8
70512991 ATGTACTTAC
70513001 ATACATAT
1 ATACATAT
* *
70513009 ATATATAC
1 ATACATAT
** *
70513017 ATATGTAC
1 ATACATAT
70513025 ATACATAT
1 ATACATAT
* *
70513033 GTACTTAT
1 ATACATAT
*
70513041 ATACATAC
1 ATACATAT
*
70513049 ATACATAC
1 ATACATAT
*
70513057 ATACATAC
1 ATACATAT
* *
70513065 ATATACAT
1 ATACATAT
70513073 ATACATAT
1 ATACATAT
* * *
70513081 ACATATAC
1 ATACATAT
* *
70513089 ATATACAT
1 ATACATAT
70513097 ATACATAT
1 ATACATAT
* * *
70513105 ACATATAC
1 ATACATAT
* *
70513113 ATATACAT
1 ATACATAT
70513121 ATACATAT
1 ATACATAT
* * *
70513129 ACATATAC
1 ATACATAT
* *
70513137 ATATACAT
1 ATACATAT
70513145 ATACATAT
1 ATACATAT
* * *
70513153 ACATATAC
1 ATACATAT
* *
70513161 ATATACAT
1 ATACATAT
70513169 ATACATAT
1 ATACATAT
* * *
70513177 ACATATAC
1 ATACATAT
* *
70513185 ATATACAT
1 ATACATAT
70513193 ATACATAT
1 ATACATAT
* * *
70513201 ACATATAC
1 ATACATAT
* *
70513209 ATATACAT
1 ATACATAT
70513217 ATACATAT
1 ATACATAT
* * *
70513225 ACATATAC
1 ATACATAT
* *
70513233 ATATACAT
1 ATACATAT
70513241 ATACATAT
1 ATACATAT
* * *
70513249 ACATATAC
1 ATACATAT
* *
70513257 ATATACAT
1 ATACATAT
70513265 ATACATAT
1 ATACATAT
* * *
70513273 ACATATAC
1 ATACATAT
* *
70513281 ATATACAT
1 ATACATAT
70513289 ATACATAT
1 ATACATAT
* * *
70513297 ACATATAC
1 ATACATAT
* *
70513305 ATATACAT
1 ATACATAT
70513313 ATACATAT
1 ATACATAT
* * *
70513321 ACATATAC
1 ATACATAT
* *
70513329 ATATACAT
1 ATACATAT
70513337 ATACATAT
1 ATACATAT
* * *
70513345 ACATATAC
1 ATACATAT
* *
70513353 ATATACAT
1 ATACATAT
70513361 ATACATAT
1 ATACATAT
* * *
70513369 ACATATAC
1 ATACATAT
* *
70513377 ATATACAT
1 ATACATAT
70513385 ATACATAT
1 ATACATAT
* * *
70513393 ACATATAC
1 ATACATAT
* *
70513401 ATATACAT
1 ATACATAT
70513409 ATACATAT
1 ATACATAT
* * *
70513417 ACATATAC
1 ATACATAT
* *
70513425 ATATACAT
1 ATACATAT
70513433 ATACATAT
1 ATACATAT
* * *
70513441 ACATATAC
1 ATACATAT
* *
70513449 ATATACAT
1 ATACATAT
70513457 ATACATAT
1 ATACATAT
* * *
70513465 ACATATAC
1 ATACATAT
* *
70513473 ATATACAT
1 ATACATAT
70513481 ATACATAT
1 ATACATAT
* * *
70513489 ACATATAC
1 ATACATAT
* *
70513497 ATATACAT
1 ATACATAT
70513505 ATACATAT
1 ATACATAT
* * *
70513513 ACATATAC
1 ATACATAT
* *
70513521 ATATACAT
1 ATACATAT
70513529 ATACATAT
1 ATACATAT
* * *
70513537 ACATATAC
1 ATACATAT
* *
70513545 ATATACAT
1 ATACATAT
70513553 ATACATAT
1 ATACATAT
* * *
70513561 ACATATAC
1 ATACATAT
* *
70513569 ATATACAT
1 ATACATAT
70513577 ATACATAT
1 ATACATAT
* * *
70513585 ACATATAC
1 ATACATAT
* *
70513593 ATATACAT
1 ATACATAT
70513601 ATACATAT
1 ATACATAT
* * *
70513609 ACATATAC
1 ATACATAT
* *
70513617 ATATACAT
1 ATACATAT
70513625 ATACATAT
1 ATACATAT
* * *
70513633 ACATATAC
1 ATACATAT
* *
70513641 ATATACAT
1 ATACATAT
70513649 ATACATAT
1 ATACATAT
* * *
70513657 ACATATAC
1 ATACATAT
* *
70513665 ATATACAT
1 ATACATAT
70513673 ATACATAT
1 ATACATAT
* * *
70513681 ACATATAC
1 ATACATAT
* *
70513689 ATATACAT
1 ATACATAT
70513697 ATACATAT
1 ATACATAT
* * *
70513705 ACATATAC
1 ATACATAT
* *
70513713 ATATACAT
1 ATACATAT
70513721 ATACATAT
1 ATACATAT
* * *
70513729 ACATATAC
1 ATACATAT
* *
70513737 ATATACAT
1 ATACATAT
70513745 ATACATAT
1 ATACATAT
* * *
70513753 ACATATAC
1 ATACATAT
* *
70513761 ATATACAT
1 ATACATAT
70513769 ATACATAT
1 ATACATAT
* * *
70513777 ACATATAC
1 ATACATAT
* *
70513785 ATATACAT
1 ATACATAT
70513793 ATACATAT
1 ATACATAT
* * *
70513801 ACATATAC
1 ATACATAT
* *
70513809 ATATACAT
1 ATACATAT
70513817 ATACATAT
1 ATACATAT
* * *
70513825 ACATATAC
1 ATACATAT
* *
70513833 ATATACAT
1 ATACATAT
70513841 ATACATAT
1 ATACATAT
* * *
70513849 ACATATAC
1 ATACATAT
* *
70513857 ATATACAT
1 ATACATAT
70513865 ATACATAT
1 ATACATAT
* *
70513873 ACATATAT
1 ATACATAT
*
70513881 ATACATAC
1 ATACATAT
* *
70513889 ATACACAC
1 ATACATAT
* *
70513897 ATACACAC
1 ATACATAT
* *
70513905 ACACATAC
1 ATACATAT
*
70513913 ATACATAC
1 ATACATAT
*
70513921 ATACATAC
1 ATACATAT
70513929 ATAC--AT
1 ATACATAT
* * *
70513935 ACACACAC
1 ATACATAT
*
70513943 ATACATAC
1 ATACATAT
*
70513951 ATACATAC
1 ATACATAT
*
70513959 ATACATAC
1 ATACATAT
*
70513967 ATACATAC
1 ATACATAT
*
70513975 ATACATAC
1 ATACATAT
*
70513983 ATACATAC
1 ATACATAT
** *
70513991 ATACGCAC
1 ATACATAT
*
70513999 ATACATAC
1 ATACATAT
* *
70514007 AAACATAC
1 ATACATAT
*
70514015 ATACCATAC
1 ATA-CATAT
*
70514024 ATACATAC
1 ATACATAT
*
70514032 ATACATAC
1 ATACATAT
*
70514040 ATACATAC
1 ATACATAT
70514048 ATACATAT
1 ATACATAT
*
70514056 ATACACAT
1 ATACATAT
* * *
70514064 ACACACAC
1 ATACATAT
*
70514072 ATACATAC
1 ATACATAT
*
70514080 ATACACA-
1 ATACATAT
*
70514087 A-ACATAC
1 ATACATAT
*
70514094 ACACATAT
1 ATACATAT
70514102 ATAC--AT
1 ATACATAT
* *
70514108 ACACATAC
1 ATACATAT
* *
70514116 AGACATAC
1 ATACATAT
*
70514124 ATACATAC
1 ATACATAT
* *
70514132 ACACACA-
1 ATACATAT
*
70514139 A-ACATAC
1 ATACATAT
* *
70514146 ACACATAC
1 ATACATAT
*
70514154 ATACATAC
1 ATACATAT
*
70514162 ATACATAC
1 ATACATAT
* *
70514170 ATACACAC
1 ATACATAT
70514178 ATACATAT
1 ATACATAT
* *
70514186 TTACATAC
1 ATACATAT
70514194 ATACATA
1 ATACATA
70514201 CGCACATACA
Statistics
Matches: 859, Mismatches: 324, Indels: 18
0.72 0.27 0.01
Matches are distributed among these distances:
6 17 0.02
7 4 0.00
8 830 0.97
9 8 0.01
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (8 bp):
ATACATAT
Found at i:70513888 original size:4 final size:4
Alignment explanation
Indices: 70513881--70514228 Score: 406
Period size: 4 Copynumber: 88.8 Consensus size: 4
70513871 ATACATATAT
* * *
70513881 ATAC ATAC ATAC ACAC ATAC ACAC ACAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
70513929 ATAC ATAC --AC ACAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** *
70513975 ATAC ATAC ATAC ATAC ATAC GCAC ATAC ATAC AAAC ATAC ATACC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC
* * * * *
70514024 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAC ACAT ACAC ACAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
70514072 ATAC ATAC ATAC --AC AAAC ATAC ACAC ATAT ATAC ATAC --AC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
70514116 AGAC ATAC ATAC ATAC --AC ACAC AAAC ATAC ACAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * **
70514162 ATAC ATAC ATAC ACAC ATAC ATAT TTAC ATAC ATAC ATAC GCAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
70514210 ATAC AAAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATA
70514229 TAGAGACAAA
Statistics
Matches: 295, Mismatches: 40, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
2 8 0.03
4 283 0.96
5 4 0.01
ACGTcount: A:0.50, C:0.28, G:0.01, T:0.21
Consensus pattern (4 bp):
ATAC
Found at i:70518533 original size:9 final size:9
Alignment explanation
Indices: 70518519--70518550 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
70518509 ATGGTTATGG
70518519 TTTTCTTTT
1 TTTTCTTTT
70518528 TTTTCTTTTT
1 TTTTC-TTTT
70518538 TTTTCTTTT
1 TTTTCTTTT
70518547 TTTT
1 TTTT
70518551 TTGCTATAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 13 0.59
10 9 0.41
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (9 bp):
TTTTCTTTT
Found at i:70518552 original size:11 final size:10
Alignment explanation
Indices: 70518519--70518551 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
70518509 ATGGTTATGG
70518519 TTTTC-TTTT
1 TTTTCTTTTT
70518528 TTTTCTTTTT
1 TTTTCTTTTT
70518538 TTTTCTTTTT
1 TTTTCTTTTT
70518548 TTTT
1 TTTT
70518552 TGCTATAGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 5 0.22
10 18 0.78
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:70520416 original size:23 final size:24
Alignment explanation
Indices: 70520390--70520437 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
70520380 TATTAGCCTA
*
70520390 AATTGATTTAA-TTTTTGTATTTT
1 AATTGAGTTAATTTTTTGTATTTT
*
70520413 AATTTAGTTAATTTTTTTGTATTTT
1 AATTGAGTTAA-TTTTTTGTATTTT
70520438 TAAAATTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 9 0.43
25 12 0.57
ACGTcount: A:0.25, C:0.00, G:0.08, T:0.67
Consensus pattern (24 bp):
AATTGAGTTAATTTTTTGTATTTT
Found at i:70525736 original size:49 final size:49
Alignment explanation
Indices: 70525493--70525804 Score: 188
Period size: 46 Copynumber: 6.6 Consensus size: 49
70525483 TATGTGTGCT
** * *
70525493 AGTGTAAGATATGCCTGGGACAT-GCATCAGC-CAC-A-ACATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCAC-CGATAGATGAGAGCC
* * ** * *
70525539 AGTGTAAGACATGTCTGGGACAT-GCATCGGCATTG--AGATAAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCACCGATAGATGAGAGCC
* * * * *
70525585 AGTGTAAGACATGTCTGGGACAT-GTATCAGCCTCGCGATATA-CA-AGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAG-CAC-CGATAGATGAGAGCC
* * * * * * *
70525633 AGTGTAAGACCTGTCTAGGACATGGCGTCAG---C-TTA-TTGTGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCACCGATAGATGAGAGCC
*
70525677 AGTGTAAGACCTGTCTGGGACATGGCATCAACACCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCACCGATAGATGAGAGCC
* * * * * *
70525726 AGTGTAAGACCTGTTTGGGACATGGAATCGGC-CTCGCTATATGAAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCAC-CGATAGATGAGAGCC
* *
70525775 AGTGTAAGACCATGTTTGGGAAATGGCATC
1 AGTGTAAGACC-TGTCTGGGACATGGCATC
70525805 GGTATCTTAA
Statistics
Matches: 207, Mismatches: 43, Indels: 28
0.74 0.15 0.10
Matches are distributed among these distances:
43 2 0.01
44 31 0.15
46 64 0.31
47 2 0.01
48 28 0.14
49 62 0.30
50 18 0.09
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCAGCACCGATAGATGAGAGCC
Found at i:70528898 original size:46 final size:44
Alignment explanation
Indices: 70528772--70528899 Score: 141
Period size: 47 Copynumber: 2.8 Consensus size: 44
70528762 ACAACTCTTA
* * *
70528772 GCCGATGCATGTCCCAAACATTTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-G-GCTCGTCTCAAT
* *
70528818 GCCGATGCTATGTTCCAGACATGGTCTTACACTGGCTC-TCTTAATGT
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTGGCTCGTCTCAA--T
70528865 GGCCGATGCATGTCCCAGACATGTCTTACACTGGC
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGC
70528900 ATACAAATAA
Statistics
Matches: 71, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
45 5 0.07
46 24 0.34
47 25 0.35
48 17 0.24
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.29
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCGTCTCAAT
Found at i:70536303 original size:39 final size:40
Alignment explanation
Indices: 70536202--70536305 Score: 142
Period size: 40 Copynumber: 2.6 Consensus size: 40
70536192 TATTCGAATG
* * *
70536202 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAATCCCGAAGGTATTTGTGCGAGTGACT
70536242 ATATCCGGGCTAAGA-CCCGAAGGTATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAA-ATCCCGAAGGTATTTGTGCGAG-TGACT
70536282 ATATCC-GGCTAAATCCCGAAGGTA
1 ATATCCGGGCTAAATCCCGAAGGTA
70536306 CTTGGGTTTG
Statistics
Matches: 58, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
38 1 0.02
39 16 0.28
40 39 0.67
41 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAATCCCGAAGGTATTTGTGCGAGTGACT
Found at i:70543607 original size:39 final size:40
Alignment explanation
Indices: 70543512--70543607 Score: 135
Period size: 40 Copynumber: 2.4 Consensus size: 40
70543502 NNNNNNNNNN
* *
70543512 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC
1 GGGCTAAATCCCGAAGGCATTTGTGCGAGTGACTATATCC
70543552 GGGCTAAGA-CCCGAAGGCATTTGTGCGAGTTG-CTATATCC
1 GGGCTAA-ATCCCGAAGGCATTTGTGCGAG-TGACTATATCC
70543592 -GGCTAAATCCCGAAGG
1 GGGCTAAATCCCGAAGG
70543608 TACTTGGGTT
Statistics
Matches: 51, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
38 1 0.02
39 14 0.27
40 34 0.67
41 2 0.04
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
GGGCTAAATCCCGAAGGCATTTGTGCGAGTGACTATATCC
Found at i:70544531 original size:201 final size:200
Alignment explanation
Indices: 70544186--70544586 Score: 793
Period size: 201 Copynumber: 2.0 Consensus size: 200
70544176 GCTTGGCAAT
70544186 GATTAGCCATTGGAATGGTTAATCTCGATCATATTTGGTGCTATGTATGTTAAATGGCTAGTTGA
1 GATTAGCCATTGGAATGGTTAATCTCGATCATATTTGGTGCTATGTATGTTAAATGGCTAGTTGA
70544251 ATCATGGAAACTATGAAATAGGTAAAATCTGCCTTAAAATAGGTGCTGACAGCAGCAGTGATGTG
66 ATCATGGAAACTATGAAATAGGTAAAATCTGCCTTAAAATAGGTGCTGACAGCAGCAGTGATGTG
70544316 AGTTTGAAAAATCACTAAAAAGTAGTAGAAATGTAATTAAATAATGAATAAATTATGTAATCGAA
131 AGTTTGAAAAATCACTAAAAA-TAGTAGAAATGTAATTAAATAATGAATAAATTATGTAATCGAA
70544381 TCTTGA
195 TCTTGA
70544387 GATTAGCCATTGGAATGGTTAATCTCGATCATATTTGGTGCTATGTATGTTAAATGGCTAGTTGA
1 GATTAGCCATTGGAATGGTTAATCTCGATCATATTTGGTGCTATGTATGTTAAATGGCTAGTTGA
70544452 ATCATGGAAACTATGAAATAGGTAAAATCTGCCTTAAAATAGGTGCTGACAGCAGCAGTGATGTG
66 ATCATGGAAACTATGAAATAGGTAAAATCTGCCTTAAAATAGGTGCTGACAGCAGCAGTGATGTG
70544517 AGTTTGAAAAATCACTAAAAATAGTAGAAATGTAATTAAATAATGAATAAATTATGTAATCGAAT
131 AGTTTGAAAAATCACTAAAAATAGTAGAAATGTAATTAAATAATGAATAAATTATGTAATCGAAT
70544582 CTTGA
196 CTTGA
70544587 TGAGTCTATT
Statistics
Matches: 200, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
200 49 0.25
201 151 0.75
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (200 bp):
GATTAGCCATTGGAATGGTTAATCTCGATCATATTTGGTGCTATGTATGTTAAATGGCTAGTTGA
ATCATGGAAACTATGAAATAGGTAAAATCTGCCTTAAAATAGGTGCTGACAGCAGCAGTGATGTG
AGTTTGAAAAATCACTAAAAATAGTAGAAATGTAATTAAATAATGAATAAATTATGTAATCGAAT
CTTGA
Found at i:70546935 original size:46 final size:46
Alignment explanation
Indices: 70546740--70547050 Score: 186
Period size: 46 Copynumber: 6.6 Consensus size: 46
70546730 TTGACGATAC
* * *
70546740 CATGTCTCAGACATGGTCTTACACTGGCTATCATCATTGAGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATC-TCGAGGCCGATG
* ** * **
70546788 CCATGTCCTAGACATCGTCTTACACCAGCTCTCGTATATACGTA--TTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTC--ATCT-CG-AGGCCGATG
* * * * * *
70546838 CCATGTCCCAGACATGGTCTTATACTAG--CACAACTCTTA-GCCGATA
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTC-GAGGCCGATG
*
70546884 CATGTCCCAGAC-TGTCTTGCACTGGCTCTCATCTTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATC-TCGAGGCCGATG
* * * * * *
70546930 CATGTCCCACACATGTCTTACACTAGCACTCGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCGATG
* * * * *
70546976 CCATGTTCCAGACATGGCCTTACACTGGCTCTCATAAT-GTGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAGGCCGATG
*
70547024 CATATCCCAGACATGTCTTACACTGGC
1 CATGTCCCAGACATGTCTTACACTGGC
70547051 ACACAAATAA
Statistics
Matches: 199, Mismatches: 49, Indels: 31
0.71 0.18 0.11
Matches are distributed among these distances:
43 9 0.05
44 1 0.01
45 19 0.10
46 46 0.23
47 41 0.21
48 23 0.12
49 27 0.14
50 29 0.15
51 3 0.02
52 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCGATG
Found at i:70548191 original size:27 final size:25
Alignment explanation
Indices: 70548156--70548243 Score: 86
Period size: 27 Copynumber: 3.3 Consensus size: 25
70548146 CAAATTATTG
70548156 AAATACCCCCAGTTGTAAAATTACC
1 AAATACCCCCAGTTGTAAAATTACC
* *
70548181 AAAGTACCCCCGGTTTATAAAATTACCC
1 AAA-TACCCCCAG-TTGTAAAATTA-CC
* * *
70548209 AAATATCCTCGATTTGTAAAATTACC
1 AAATA-CCCCCAGTTGTAAAATTACC
70548235 AAAATACCC
1 -AAATACCC
70548244 TGTAGGGTAG
Statistics
Matches: 50, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
25 3 0.06
26 12 0.24
27 27 0.54
28 8 0.16
ACGTcount: A:0.40, C:0.26, G:0.08, T:0.26
Consensus pattern (25 bp):
AAATACCCCCAGTTGTAAAATTACC
Found at i:70548302 original size:22 final size:24
Alignment explanation
Indices: 70548228--70549348 Score: 498
Period size: 27 Copynumber: 41.6 Consensus size: 24
70548218 CGATTTGTAA
* *
70548228 AATTACCAAAATACCCTGTAGGGTAG
1 AATTACCGAAATACCCCGT--GGTAG
*
70548254 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCC-GT--GGTAG
70548281 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCC-GT--GGTAG
* * *
70548308 AATTATCGCAATACTCCTGTAGGGTAG
1 AATTACCGAAATAC-CCCGT--GGTAG
*
70548335 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACC-CCGT--GGTAG
* *
70548362 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCC-GT--GGTAG
* *
70548389 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCC-GT--GGTAG
* *
70548416 AATTACCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCC-GT--GGTAG
*
70548443 AATTACCGAAATACCCCTGTAGGGCAG
1 AATTACCGAAATACCCC-GT--GGTAG
*
70548470 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCC-GT--GGTAG
* * *
70548497 AATTATCGCAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCC-G--TGGTAG
70548524 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCC-GT--GGTAG
* * *
70548551 AATTATCGCAATACTCCTGTAGGGTAG
1 AATTACCGAAATAC-CCCGT--GGTAG
*
70548578 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACC-CCGT--GGTAG
* *
70548605 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCC-GT--GGTAG
* * *
70548632 AATTATCGCAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCC-G--TGGTAG
70548659 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCC-GT--GGTAG
* * *
70548686 AATTATCGCAATACTCCTGTAGGGTAG
1 AATTACCGAAATAC-CCCGT--GGTAG
*
70548713 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACC-CCGT--GGTAG
* *
70548740 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCC-GT--GGTAG
* * *
70548767 AATTATCGCAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCC-G--TGGTAG
70548794 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCC-GT--GGTAG
* * *
70548821 AATTATCGCAATACTCCTGTAGGGTAG
1 AATTACCGAAATAC-CCCGT--GGTAG
*
70548848 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACC-CCGT--GGTAG
* *
70548875 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCC-GT--GGTAG
* * *
70548902 AATTATCGCAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCC-G--TGGTAG
70548929 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCC-GT--GGTAG
* * *
70548956 AATTATCGCAATACTCCTGTAGGGTAG
1 AATTACCGAAATAC-CCCGT--GGTAG
*
70548983 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACC-CCGT--GGTAG
* *
70549010 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCC-GT--GGTAG
* * *
70549037 AATTATCGCAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCC-G--TGGTAG
*
70549064 AATTACCGAAATACCCCTGTAGGGCAG
1 AATTACCGAAATACCCC-GT--GGTAG
*
70549091 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCC-GT--GGTAG
* * *
70549118 AATTATCGCAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCC-G--TGGTAG
*
70549145 AATTACCGAAATACCCCTGTAGGGCAG
1 AATTACCGAAATACCCC-GT--GGTAG
*
70549172 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCC-GT--GGTAG
* * *
70549199 AATTATCGCAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCC-G--TGGTAG
70549226 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCC-GT--GGTAG
* * *
70549253 AATTATCGCAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCC-CGT--GGTAG
*
70549280 AATTACCGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCC-GT--GGTAG
*
70549307 AATTA-CGAAAATACCCCTGTAGGGTGG
1 AATTACCG-AAATACCCC-GT--GGTAG
*
70549334 AATTACCGAGATACC
1 AATTACCGAAATACC
70549349 TTGTGGGGTA
Statistics
Matches: 929, Mismatches: 118, Indels: 95
0.81 0.10 0.08
Matches are distributed among these distances:
26 26 0.03
27 891 0.96
28 12 0.01
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (24 bp):
AATTACCGAAATACCCCGTGGTAG
Found at i:70548314 original size:54 final size:54
Alignment explanation
Indices: 70548228--70549366 Score: 1600
Period size: 54 Copynumber: 21.1 Consensus size: 54
70548218 CGATTTGTAA
* *
70548228 AATTACCAAAATA-CCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
70548281 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
70548335 AATTACCGAAATACCTCTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
70548389 AATTATCGCAATACCCCTGTAGGGTAGAATTACCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
70548443 AATTACCGAAATACCCCTGTAGGGCAGAATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
70548497 AATTATCGCAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
70548551 AATTATCGCAATACTCCTGTAGGGTAGAATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * *
70548605 AATTACCAAAATACCCCTATAGGGTAGAATTATCGCAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
70548659 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
70548713 AATTACCGAAATACCTCTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
70548767 AATTATCGCAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
70548821 AATTATCGCAATACTCCTGTAGGGTAGAATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * *
70548875 AATTACCAAAATACCCCTATAGGGTAGAATTATCGCAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
70548929 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
70548983 AATTACCGAAATACCTCTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
70549037 AATTATCGCAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGCAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
70549091 AATTATCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
70549145 AATTACCGAAATACCCCTGTAGGGCAGAATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
70549199 AATTATCGCAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
70549253 AATTATCGCAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * *
70549307 AATTA-CGAAAATACCCCTGTAGGGTGGAATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCG-AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
70549360 AATTACC
1 AATTACC
70549367 ATTTTGCCCT
Statistics
Matches: 977, Mismatches: 106, Indels: 5
0.90 0.10 0.00
Matches are distributed among these distances:
53 30 0.03
54 947 0.97
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (54 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:70548355 original size:81 final size:81
Alignment explanation
Indices: 70548237--70549348 Score: 1661
Period size: 81 Copynumber: 13.7 Consensus size: 81
70548227 AAATTACCAA
*
70548237 AATA-CCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGT
1 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGT
70548301 AGGGTAGAATTATCGC
66 AGGGTAGAATTATCGC
* * * *
70548317 AATACTCCTGTAGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAATTACCAAAATACCCCTAT
1 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGT
70548382 AGGGTAGAATTATCGC
66 AGGGTAGAATTATCGC
* *
70548398 AATACCCCTGTAGGGTAGAATTACCGCAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGT
1 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGT
* *
70548463 AGGGCAGAATTATCGA
66 AGGGTAGAATTATCGC
* * *
70548479 AATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGT
1 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGT
70548544 AGGGTAGAATTATCGC
66 AGGGTAGAATTATCGC
* * * *
70548560 AATACTCCTGTAGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAATTACCAAAATACCCCTAT
1 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGT
70548625 AGGGTAGAATTATCGC
66 AGGGTAGAATTATCGC
* * * *
70548641 AATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACTCCTGT
1 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGT
* *
70548706 AGGGTAGAATTACCGA
66 AGGGTAGAATTATCGC
* * * * * *
70548722 AATACCTCTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATTATCGCAATACCCCTGC
1 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGT
* *
70548787 AGGGTAGAATTACCGA
66 AGGGTAGAATTATCGC
* * * *
70548803 AATACCCCTGTAGGGTAGAATTATCGCAATACTCCTGTAGGGTAGAATTACCGAAATACCTCTGT
1 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGT
* **
70548868 AGGGTAGAATTACCAA
66 AGGGTAGAATTATCGC
* * * *
70548884 AATACCCCTATAGGGTAGAATTATCGCAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGT
1 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGT
70548949 AGGGTAGAATTATCGC
66 AGGGTAGAATTATCGC
* * * *
70548965 AATACTCCTGTAGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAATTACCAAAATACCCCTAT
1 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGT
70549030 AGGGTAGAATTATCGC
66 AGGGTAGAATTATCGC
* * *
70549046 AATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGCAGAATTATCGAAATACCCCTGT
1 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGT
70549111 AGGGTAGAATTATCGC
66 AGGGTAGAATTATCGC
* * *
70549127 AATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGCAGAATTATCGAAATACCCCTGT
1 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGT
70549192 AGGGTAGAATTATCGC
66 AGGGTAGAATTATCGC
* * * *
70549208 AATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCTTGT
1 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGT
* *
70549273 AGGGTAGAATTACCGA
66 AGGGTAGAATTATCGC
* * *
70549289 AATACCCCTGTAGGGTAAAATTA-CGAAAATACCCCTGTAGGGTGGAATTACCGAGATACC
1 AATACCCCTGTAGGGTAGAATTACCG-AAATACCCCTGTAGGGTAGAATTACCGAAATACC
70549349 TTGTGGGGTA
Statistics
Matches: 945, Mismatches: 85, Indels: 3
0.91 0.08 0.00
Matches are distributed among these distances:
80 6 0.01
81 939 0.99
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (81 bp):
AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGT
AGGGTAGAATTATCGC
Found at i:70548414 original size:135 final size:135
Alignment explanation
Indices: 70548237--70549348 Score: 1701
Period size: 135 Copynumber: 8.2 Consensus size: 135
70548227 AAATTACCAA
* * * *
70548237 AATA-CCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGT
1 AATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGT
* * * * *
70548301 AGGGTAGAATTATCGCAATA-CTCCTGTAGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAAT
66 AGGGTAGAATTACCGAAATACCT-CTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAAT
* **
70548365 TACCAA
130 TATCGC
** * * * *
70548371 AATACCCCTATAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGCAATACCCCTAT
1 AATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGT
* * * * *
70548436 AGGGTAGAATTACCGAAATACCCCTGTAGGGCAGAATTATCGAAATACCCCTGTAGGGTAGAATT
66 AGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATT
70548501 ATCGC
131 ATCGC
*
70548506 AATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACTCCTGT
1 AATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGT
70548571 AGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATT
66 AGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATT
70548636 ATCGC
131 ATCGC
*
70548641 AATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACTCCTGT
1 AATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGT
70548706 AGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATT
66 AGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATT
70548771 ATCGC
131 ATCGC
*
70548776 AATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACTCCTGT
1 AATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGT
70548841 AGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATT
66 AGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATT
70548906 ATCGC
131 ATCGC
*
70548911 AATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACTCCTGT
1 AATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGT
70548976 AGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATT
66 AGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATT
70549041 ATCGC
131 ATCGC
* *
70549046 AATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGCAGAATTATCGAAATACCCCTGT
1 AATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGT
* * * * * * *
70549111 AGGGTAGAATTATCGCAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGCAGAATT
66 AGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATT
*
70549176 ATCGA
131 ATCGC
* * * * * *
70549181 AATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGT
1 AATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGT
* * * * *
70549246 AGGGTAGAATTATCGCAATACC-CTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAAAAT
66 AGGGTAGAATTACCGAAATACCTC-TGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAAT
*
70549310 TA-CGAA
130 TATCG-C
* * *
70549316 AATACCCCTGTAGGGTGGAATTACCGAGATACC
1 AATACCCCTGCAGGGTAGAATTACCGAAATACC
70549349 TTGTGGGGTA
Statistics
Matches: 925, Mismatches: 49, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
134 7 0.01
135 917 0.99
136 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (135 bp):
AATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGT
AGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAGAATT
ATCGC
Found at i:70549845 original size:22 final size:22
Alignment explanation
Indices: 70549793--70549857 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
70549783 TTAAAGCCTT
* *
70549793 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
70549815 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
70549837 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
70549858 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:70550046 original size:27 final size:26
Alignment explanation
Indices: 70550016--70550091 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 26
70550006 ATTCTATTAA
*
70550016 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTTTGCCACAATATCTGTTT-TG
* *
70550043 GTGGCTATGCCACAAATATCTATTTTG
1 GTGGCTTTGCCAC-AATATCTGTTTTG
70550070 GTGGCTTTGCCACAATATCTGT
1 GTGGCTTTGCCACAATATCTGT
70550092 AGACTCTGTC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 8 0.19
27 26 0.60
28 9 0.21
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.39
Consensus pattern (26 bp):
GTGGCTTTGCCACAATATCTGTTTTG
Found at i:70550281 original size:31 final size:31
Alignment explanation
Indices: 70550243--70550322 Score: 133
Period size: 31 Copynumber: 2.6 Consensus size: 31
70550233 TTGCATTCAC
*
70550243 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTA
70550274 ATTCTGATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTTTGATTCTGTTACCTGATACTA
* *
70550305 ATTCTAATTCTGATTCTG
1 ATTCTGATTTTGATTCTG
70550323 ATTCTAGTTC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTA
Found at i:70550282 original size:6 final size:6
Alignment explanation
Indices: 70550243--70550336 Score: 68
Period size: 6 Copynumber: 15.3 Consensus size: 6
70550233 TTGCATTCAC
* * *
70550243 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
70550292 -TTACCTG ATACTA ATTCTA ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
70550337 AATGTTTCTT
Statistics
Matches: 70, Mismatches: 10, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
5 5 0.07
6 56 0.80
7 7 0.10
8 2 0.03
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:70551880 original size:3 final size:3
Alignment explanation
Indices: 70551872--70551900 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
70551862 CCATAACCTC
70551872 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
70551901 TTACCCAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:70562539 original size:21 final size:21
Alignment explanation
Indices: 70562513--70562557 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
70562503 TTTCACATGT
70562513 CATTTCTAACATATTGTTGAC
1 CATTTCTAACATATTGTTGAC
70562534 CATTTCTAACATATTGTTGAC
1 CATTTCTAACATATTGTTGAC
70562555 CAT
1 CAT
70562558 GTAATAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.42
Consensus pattern (21 bp):
CATTTCTAACATATTGTTGAC
Found at i:70566338 original size:72 final size:72
Alignment explanation
Indices: 70566215--70566358 Score: 227
Period size: 72 Copynumber: 2.0 Consensus size: 72
70566205 GACTCGGGGT
* * *
70566215 TACAATTTTTTGGTTAATTTGATGCTATTACCATTTGATGAATTTGTCATGATTTTAGGCATGGA
1 TACAATTTTCTGGCTAATTTGAGGCTATTACCATTTGATGAATTTGTCATGATTTTAGGCATGGA
70566280 TTGGCTA
66 TTGGCTA
* *
70566287 TACAATTTTCTGGCTAATTTGAGGCTATTACCGTTTGATGAATTT-TACATGATTTTGGGCATGG
1 TACAATTTTCTGGCTAATTTGAGGCTATTACCATTTGATGAATTTGT-CATGATTTTAGGCATGG
70566351 ATTGGCTA
65 ATTGGCTA
70566359 ACTTTACACA
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
71 1 0.02
72 65 0.98
ACGTcount: A:0.24, C:0.11, G:0.21, T:0.44
Consensus pattern (72 bp):
TACAATTTTCTGGCTAATTTGAGGCTATTACCATTTGATGAATTTGTCATGATTTTAGGCATGGA
TTGGCTA
Found at i:70578685 original size:56 final size:56
Alignment explanation
Indices: 70578602--70578708 Score: 187
Period size: 56 Copynumber: 1.9 Consensus size: 56
70578592 CAAGATGCTC
* *
70578602 ATGTGAGCCATGTATCAGGAAGGTTATCCAGGCTAAACAGGAAACTCATAAGATTT
1 ATGTGAGCCATGTATCAGCAAGCTTATCCAGGCTAAACAGGAAACTCATAAGATTT
*
70578658 ATGTGAGCCGTGTATCAGCAAGCTTATCCAGGCTAAACAGGAAACTCATAA
1 ATGTGAGCCATGTATCAGCAAGCTTATCCAGGCTAAACAGGAAACTCATAA
70578709 AAGTTTTAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGTGAGCCATGTATCAGCAAGCTTATCCAGGCTAAACAGGAAACTCATAAGATTT
Found at i:70579549 original size:17 final size:17
Alignment explanation
Indices: 70579519--70579552 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
70579509 GACCATAAGT
70579519 TTTGAATTTCATAGCTA
1 TTTGAATTTCATAGCTA
70579536 TTTGATATTT-ATAGCTA
1 TTTGA-ATTTCATAGCTA
70579553 CTAGAACTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.29, C:0.09, G:0.12, T:0.50
Consensus pattern (17 bp):
TTTGAATTTCATAGCTA
Found at i:70580979 original size:23 final size:23
Alignment explanation
Indices: 70580953--70580998 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
70580943 CAAATAAAGG
*
70580953 TATTTTTTTTTATGAGCAGGAAT
1 TATTTTTATTTATGAGCAGGAAT
70580976 TATTTTTATTTATGAGCAGGAAT
1 TATTTTTATTTATGAGCAGGAAT
70580999 AGTATGTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.04, G:0.17, T:0.50
Consensus pattern (23 bp):
TATTTTTATTTATGAGCAGGAAT
Found at i:70582610 original size:27 final size:27
Alignment explanation
Indices: 70582537--70582619 Score: 114
Period size: 28 Copynumber: 3.1 Consensus size: 27
70582527 TGGAGGAAGC
*
70582537 GTTCTTGTGGCTATGCCACAAATATCT
1 GTTCTAGTGGCTATGCCACAAATATCT
*
70582564 GTTTCTGGTGGCTATGCCACAAATATCT
1 G-TTCTAGTGGCTATGCCACAAATATCT
* *
70582592 GTTCTAGTGGCTCTACCAC-AATATCT
1 GTTCTAGTGGCTATGCCACAAATATCT
70582618 GT
1 GT
70582620 ATCTGGTGAC
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 9 0.18
27 16 0.31
28 26 0.51
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (27 bp):
GTTCTAGTGGCTATGCCACAAATATCT
Found at i:70582632 original size:27 final size:27
Alignment explanation
Indices: 70582537--70582644 Score: 121
Period size: 27 Copynumber: 4.0 Consensus size: 27
70582527 TGGAGGAAGC
* *
70582537 GTTCTTGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
*
70582564 GTTTCTGGTGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTCTGCCACAAATATCT
* *
70582592 GTTCTAGTGGCTCTACCAC-AATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* *
70582618 GTATCTGGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTCTGCCACAAATATCT
70582645 ATCCTGGCAG
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
26 9 0.13
27 36 0.51
28 26 0.37
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAAATATCT
Found at i:70582639 original size:54 final size:54
Alignment explanation
Indices: 70582537--70582644 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 54
70582527 TGGAGGAAGC
* * * *
70582537 GTTCTTGTGGCTATGCCACAAATATCTGTTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTAGTGGCTATACCACAAATATCTGTATCTGGTGACTATGCCAC-AATATCT
* * *
70582592 GTTCTAGTGGCTCTACCAC-AATATCTGTATCTGGTGACTCTGTCACAATATCT
1 GTTCTAGTGGCTATACCACAAATATCTGTATCTGGTGACTATGCCACAATATCT
70582645 ATCCTGGCAG
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
53 7 0.15
54 23 0.50
55 16 0.35
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (54 bp):
GTTCTAGTGGCTATACCACAAATATCTGTATCTGGTGACTATGCCACAATATCT
Found at i:70583645 original size:43 final size:42
Alignment explanation
Indices: 70583552--70583666 Score: 142
Period size: 43 Copynumber: 2.7 Consensus size: 42
70583542 AGGGTTAGTA
* * *
70583552 AGATTACATGTGAGTCCATACTTGGGATATAGCATCGATACG
1 AGATTTCATGTAAGACCATACTTGGGATATAGCATCGATACG
* * * *
70583594 AGACTTCATGTAAGACCATAGTTGGGCTATTGGCATCGATACG
1 AGATTTCATGTAAGACCATACTTGGGATA-TAGCATCGATACG
70583637 AGATTTCATGTAAGACCATA-TCTGGGATAT
1 AGATTTCATGTAAGACCATACT-TGGGATAT
70583667 GGTGTTGGTA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 25 0.40
43 37 0.60
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (42 bp):
AGATTTCATGTAAGACCATACTTGGGATATAGCATCGATACG
Found at i:70585157 original size:17 final size:17
Alignment explanation
Indices: 70585131--70585171 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
70585121 CAGCTGTGTA
*
70585131 ACATGACCGTGTGTCGC
1 ACATGGCCGTGTGTCGC
*
70585148 ACATGGCCGTGTGTTGC
1 ACATGGCCGTGTGTCGC
70585165 ACATGGC
1 ACATGGC
70585172 TGAGACACAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (17 bp):
ACATGGCCGTGTGTCGC
Found at i:70597592 original size:42 final size:43
Alignment explanation
Indices: 70597503--70597594 Score: 105
Period size: 42 Copynumber: 2.2 Consensus size: 43
70597493 CCAGATGTGG
* * **
70597503 TCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACAGGG
1 TCTTACATGAAATCAAATATCGATGCCAATGTCCCAAACAGAA
* ** *
70597546 TCTTACATGAAATCAAATA-CGATGCTAATGTCCCAGGCATAA
1 TCTTACATGAAATCAAATATCGATGCCAATGTCCCAAACAGAA
70597588 TCTTACA
1 TCTTACA
70597595 CGTAAATTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 23 0.56
43 18 0.44
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (43 bp):
TCTTACATGAAATCAAATATCGATGCCAATGTCCCAAACAGAA
Found at i:70599383 original size:43 final size:42
Alignment explanation
Indices: 70599327--70599432 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 42
70599317 GCCAATGTCC
* * *
70599327 CAGACATGCTCTTACATGTAATCAAATATCGGTGCC-ACTCTTCT
1 CAGACAGGGTCTTACATGTAATCAAATA-CGATGCCGA-T-TTCT
* *
70599371 -AGACAGGGTCTTACACGAAATCAAATACGATGCCGATTTCT
1 CAGACAGGGTCTTACATGTAATCAAATACGATGCCGATTTCT
*
70599412 CAGACATGGTCTTACATGTAA
1 CAGACAGGGTCTTACATGTAA
70599433 ATCTCAAATC
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
41 4 0.08
42 24 0.46
43 24 0.46
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (42 bp):
CAGACAGGGTCTTACATGTAATCAAATACGATGCCGATTTCT
Found at i:70599435 original size:43 final size:44
Alignment explanation
Indices: 70599327--70599479 Score: 133
Period size: 43 Copynumber: 3.6 Consensus size: 44
70599317 GCCAATGTCC
* *
70599327 CAGACATGCTCTTACATGT-AATCAAATATCGGTGCCACTCTTCT
1 CAGACATGGTCTTACATGTAAATCAAATA-CGATGCCACTCTTCT
* *
70599371 -AGACAGGGTCTTACACG-AAATCAAATACGATGCCGA-T-TTCT
1 CAGACATGGTCTTACATGTAAATCAAATACGATGCC-ACTCTTCT
* * *
70599412 CAGACATGGTCTTACATGTAAATCTCAAAT-CGATGCCA-GCGTCC
1 CAGACATGGTCTTACATGTAAA--TCAAATACGATGCCACTCTTCT
* *
70599456 CAAACGTGGTCTTACATG-AAATCA
1 CAGACATGGTCTTACATGTAAATCA
70599480 CAAATCGAAA
Statistics
Matches: 91, Mismatches: 11, Indels: 17
0.76 0.09 0.14
Matches are distributed among these distances:
41 7 0.08
42 22 0.24
43 31 0.34
44 25 0.27
45 6 0.07
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (44 bp):
CAGACATGGTCTTACATGTAAATCAAATACGATGCCACTCTTCT
Found at i:70606625 original size:44 final size:41
Alignment explanation
Indices: 70606477--70606634 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 41
70606467 AACTCGTACA
* * * *
70606477 ATGCCAACGTCCTAGA-AGTGGTCTTACATGTAATCAGATATCG
1 ATGCCAATGTCCCAGACA-TGGTCTTACACGAAATCA-A-ATCG
* *
70606520 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAAT-CG
* *
70606562 ATGCCGACGTCCCAGACATGGTCTTACACGTAAATCTCAAATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAA--TCAAATCG
*
70606606 ATGCCAATGTCCCAAACATGGTCTTACAC
1 ATGCCAATGTCCCAGACATGGTCTTACAC
70606635 AAGATCACAT
Statistics
Matches: 97, Mismatches: 13, Indels: 9
0.82 0.11 0.08
Matches are distributed among these distances:
41 2 0.02
42 29 0.30
43 31 0.32
44 29 0.30
45 6 0.06
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (41 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATCG
Found at i:70606629 original size:86 final size:85
Alignment explanation
Indices: 70606477--70606634 Score: 210
Period size: 86 Copynumber: 1.8 Consensus size: 85
70606467 AACTCGTACA
* * * * * *
70606477 ATGCCAACGTCCTAGAAGTGGTCTTACATGTAATCAGATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGAAGTGGTCTTACACGTAATCACAAATCGATGCCAATGTCCCAAACAGGGT
70606542 CTTACACGAAATCAAATACG
66 CTTACACGAAATCAAATACG
* * *
70606562 ATGCCGACGTCCCAGACA-TGGTCTTACACGTAAATCTCAAATCGATGCCAATGTCCCAAACATG
1 ATGCCAACGTCCCAGA-AGTGGTCTTACACGT-AATCACAAATCGATGCCAATGTCCCAAACAGG
70606626 GTCTTACAC
64 GTCTTACAC
70606635 AAGATCACAT
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
85 26 0.42
86 36 0.58
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (85 bp):
ATGCCAACGTCCCAGAAGTGGTCTTACACGTAATCACAAATCGATGCCAATGTCCCAAACAGGGT
CTTACACGAAATCAAATACG
Found at i:70608209 original size:16 final size:17
Alignment explanation
Indices: 70608190--70608222 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
70608180 ATTTATGGCA
70608190 TGATAAATGTTG-TATG
1 TGATAAATGTTGATATG
70608206 TGATAAATGTTGATATG
1 TGATAAATGTTGATATG
70608223 GTATTGGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.42
Consensus pattern (17 bp):
TGATAAATGTTGATATG
Found at i:70610112 original size:20 final size:19
Alignment explanation
Indices: 70610087--70610136 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
70610077 GATTTTTGGG
*
70610087 AAAATTAATTTTAATCAAGT
1 AAAATTAA-ATTAATCAAGT
*
70610107 AAAATTAAATTAATCAAAT
1 AAAATTAAATTAATCAAGT
*
70610126 -TAATTAAATTA
1 AAAATTAAATTA
70610137 TTATGATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 10 0.37
19 9 0.33
20 8 0.30
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (19 bp):
AAAATTAAATTAATCAAGT
Found at i:70612820 original size:47 final size:47
Alignment explanation
Indices: 70612751--70613161 Score: 697
Period size: 47 Copynumber: 8.8 Consensus size: 47
70612741 TTCATATCAC
70612751 ACATCTCACGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT
1 ACATCTCACGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT
70612798 ACATCTCACGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT
1 ACATCTCACGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT
70612845 ACATCTCACGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT
1 ACATCTCACGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT
70612892 ACATCTCACGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT
1 ACATCTCACGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT
70612939 ACATCTCACGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT
1 ACATCTCACGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT
70612986 ACATCTCACGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT
1 ACATCTCACGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT
* * *
70613033 ACATCTCACGAACTCGGACTCAACTCAATGAGCTC--A-GGC--GTT
1 ACATCTCACGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT
* * *
70613075 CGCATCCATGAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT
1 -ACAT-C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT
70613126 ACATCTCACGAACTCGGACTCAACTCAACGAGTTCG
1 ACATCTCACGAACTCGGACTCAACTCAACGAGTTCG
70613162 GACATTTGCA
Statistics
Matches: 343, Mismatches: 12, Indels: 18
0.92 0.03 0.05
Matches are distributed among these distances:
42 3 0.01
43 3 0.01
44 3 0.01
45 3 0.01
46 24 0.07
47 295 0.86
48 3 0.01
49 3 0.01
50 3 0.01
51 3 0.01
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (47 bp):
ACATCTCACGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT
Found at i:70613187 original size:46 final size:46
Alignment explanation
Indices: 70613042--70613209 Score: 173
Period size: 46 Copynumber: 3.6 Consensus size: 46
70613032 TACATCTCAC
* * * * *
70613042 GAACTCGGACTCAACTCAATGAGCTCAGG-CGTTCGCATCCATGAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCATAAGT
* * * * *
70613088 GAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGTTCG---GAC-ATTTGCATCCATAAGT
70613135 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
70613181 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
70613210 TGCTCAACCA
Statistics
Matches: 101, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 3 0.03
46 53 0.52
47 27 0.27
48 3 0.03
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
Found at i:70615403 original size:123 final size:123
Alignment explanation
Indices: 70615240--70615485 Score: 474
Period size: 123 Copynumber: 2.0 Consensus size: 123
70615230 AAAAGTGTAC
*
70615240 CAAAAGGGCTTTGATAGTGTGGACGACTTCGACTTTGACAATCCCGAGCCCGATAGCTGGCGAAC
1 CAAAAGGGCTTTGATAGTGTGGACGACTTCGACTTCGACAATCCCGAGCCCGATAGCTGGCGAAC
*
70615305 CAAAATCTATAAAATAGAGAATCAAAGAAACAGAGTAAGCATTTAATGCTTAGTAAGT
66 CAAAATCTATAAAACAGAGAATCAAAGAAACAGAGTAAGCATTTAATGCTTAGTAAGT
70615363 CAAAAGGGCTTTGATAGTGTGGACGACTTCGACTTCGACAATCCCGAGCCCGATAGCTGGCGAAC
1 CAAAAGGGCTTTGATAGTGTGGACGACTTCGACTTCGACAATCCCGAGCCCGATAGCTGGCGAAC
70615428 CAAAATCTATAAAACAGAGAATCAAAGAAACAGAGTAAGCATTTAATGCTTAGTAAGT
66 CAAAATCTATAAAACAGAGAATCAAAGAAACAGAGTAAGCATTTAATGCTTAGTAAGT
70615486 TTTGAATAAT
Statistics
Matches: 121, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 121 1.00
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (123 bp):
CAAAAGGGCTTTGATAGTGTGGACGACTTCGACTTCGACAATCCCGAGCCCGATAGCTGGCGAAC
CAAAATCTATAAAACAGAGAATCAAAGAAACAGAGTAAGCATTTAATGCTTAGTAAGT
Found at i:70615863 original size:40 final size:40
Alignment explanation
Indices: 70615810--70615994 Score: 318
Period size: 40 Copynumber: 4.6 Consensus size: 40
70615800 ACTACTTGCT
*
70615810 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
70615850 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
70615890 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
70615930 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
70615970 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
70615995 TTATCATCCG
Statistics
Matches: 139, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
39 1 0.01
40 138 0.99
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:70631246 original size:40 final size:41
Alignment explanation
Indices: 70631193--70631341 Score: 234
Period size: 40 Copynumber: 3.7 Consensus size: 41
70631183 ACTACTTGCT
70631193 CAAATGCCTTCGGGACTTAGCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
*
70631233 CAAGTGCCTTCGGGACTTAGCCCGGA-TATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
* * *
70631273 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
70631313 CAAATGCCTTCGGGACTTAGCCCGG-TTAT
1 CAAATGCCTTCGGGACTTAGCCCGGATTAT
70631342 CATCTGAATA
Statistics
Matches: 101, Mismatches: 5, Indels: 6
0.90 0.04 0.05
Matches are distributed among these distances:
39 1 0.01
40 97 0.96
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
Found at i:70634322 original size:15 final size:15
Alignment explanation
Indices: 70634293--70634342 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
70634283 CAAAGATAAC
*
70634293 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
70634307 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
70634322 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
70634337 AAGAAA
1 AAGAAA
70634343 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:70634351 original size:15 final size:15
Alignment explanation
Indices: 70634304--70634351 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
70634294 AGAAAACCGA
70634304 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
70634318 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
70634334 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
70634349 ATA
1 ATA
70634352 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:70636898 original size:38 final size:36
Alignment explanation
Indices: 70636834--70636907 Score: 112
Period size: 38 Copynumber: 2.0 Consensus size: 36
70636824 TATGCCAAGA
*
70636834 TGGTATACGGACAGTGTGAGCGTGCCTCCGACCGTT
1 TGGTATACGGACAGTGTGAGCATGCCTCCGACCGTT
*
70636870 TGGTATACGGATATAGTGTGAGCATGCCTCCGACCGTT
1 TGGTATACGG--ACAGTGTGAGCATGCCTCCGACCGTT
70636908 CCCGATTTCC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
36 10 0.29
38 24 0.71
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.27
Consensus pattern (36 bp):
TGGTATACGGACAGTGTGAGCATGCCTCCGACCGTT
Found at i:70639509 original size:17 final size:17
Alignment explanation
Indices: 70639487--70639520 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
70639477 TGAATTCTAG
*
70639487 TAGCTATAAGGATCAAA
1 TAGCTATAAGAATCAAA
*
70639504 TAGCTATGAGAATCAAA
1 TAGCTATAAGAATCAAA
70639521 ACTAGAGGTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.24
Consensus pattern (17 bp):
TAGCTATAAGAATCAAA
Found at i:70640950 original size:30 final size:30
Alignment explanation
Indices: 70640911--70640971 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
70640901 CTTGAAAAAG
*
70640911 TATTGCATGATGAGCTCATCTATCCCTACT
1 TATTACATGATGAGCTCATCTATCCCTACT
*
70640941 TATTACATGATGAGCTCATCTATCCTTACT
1 TATTACATGATGAGCTCATCTATCCCTACT
70640971 T
1 T
70640972 GATGTATATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.39
Consensus pattern (30 bp):
TATTACATGATGAGCTCATCTATCCCTACT
Found at i:70661928 original size:20 final size:20
Alignment explanation
Indices: 70661903--70661945 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
70661893 GTACGCAATT
70661903 GTTGACTAGTCATTTTTCTA
1 GTTGACTAGTCATTTTTCTA
70661923 GTTGACTAGTCATTTTTCTA
1 GTTGACTAGTCATTTTTCTA
70661943 GTT
1 GTT
70661946 AGGCAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.19, C:0.14, G:0.16, T:0.51
Consensus pattern (20 bp):
GTTGACTAGTCATTTTTCTA
Found at i:70665324 original size:19 final size:19
Alignment explanation
Indices: 70665279--70665324 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
70665269 TGTGGATACA
*
70665279 AGGACATGCCCGTGTGCCC
1 AGGACATGCCCGTGTCCCC
**
70665298 TTGACATGCCCGTGTCCCC
1 AGGACATGCCCGTGTCCCC
*
70665317 AGGCCATG
1 AGGACATG
70665325 TAACTCTCTG
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.15, C:0.37, G:0.28, T:0.20
Consensus pattern (19 bp):
AGGACATGCCCGTGTCCCC
Found at i:70666976 original size:51 final size:51
Alignment explanation
Indices: 70666892--70667031 Score: 158
Period size: 51 Copynumber: 2.7 Consensus size: 51
70666882 CGGATACCCG
*
70666892 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTT-CACAAA
1 GTGGCCTGCACATAGTACCACACTTGTGA-TCAAAGCTACC-TCTTACACAAA
* * * * *
70666943 GTGGCCTTCACATAGTACCACACTTGTGATCAAAACCATCTCTTACACATA
1 GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTACCTCTTACACAAA
* * * *
70666994 GTGGCCTGCACTTAATACCACACATGTGATCGAAGCTA
1 GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTA
70667032 TCGGGTATGC
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
50 4 0.05
51 69 0.93
52 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (51 bp):
GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTACCTCTTACACAAA
Found at i:70667109 original size:50 final size:52
Alignment explanation
Indices: 70667041--70667172 Score: 169
Period size: 52 Copynumber: 2.6 Consensus size: 52
70667031 ATCGGGTATG
**
70667041 CATAGTAGCCTGCACTTAGTACTACACATGCAACCT-AACC-ATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCAACCTAAACCAATCTGAAACA
* * ** * *
70667091 CGTAGTAGCCTACACTTAGTACTACACATGTGACCTAAACCAATTTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCAACCTAAACCAATCTGAAACA
*
70667143 CATAGTAGCCTGCACATAGTACTACACATG
1 CATAGTAGCCTGCACTTAGTACTACACATG
70667173 TGTTCTCACA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
50 32 0.46
51 4 0.06
52 33 0.48
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (52 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCAACCTAAACCAATCTGAAACA
Found at i:70667170 original size:52 final size:50
Alignment explanation
Indices: 70666987--70667174 Score: 169
Period size: 50 Copynumber: 3.7 Consensus size: 50
70666977 ACCATCTCTT
* * * * * * * **
70666987 ACACATAGTGGCCTGCACTTAATACCACACATGTGATCGAAGCTATCGGGT
1 ACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CCATCTGAA
** ** **
70667038 ATGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTAACCATCTGGT
1 ACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGAA
* * * *
70667088 ACACGTAGTAGCCTACACTTAGTACTACACATGTGACCTAAACCAATTTTAA
1 ACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AACC-ATCTGAA
*
70667140 ACACATAGTAGCCTGCACATAGTACTACACATGTG
1 ACACATAGTAGCCTGCACTTAGTACTACACATGTG
70667175 TTCTCACAAT
Statistics
Matches: 111, Mismatches: 24, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
50 40 0.36
51 36 0.32
52 35 0.32
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (50 bp):
ACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGAA
Found at i:70677653 original size:43 final size:42
Alignment explanation
Indices: 70677533--70677690 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 42
70677523 AACTCGTACA
* *
70677533 ATGCCAACGTCCTAGACGTGGTCTTACA-TGTAATCAAATATTG
1 ATGCCAACGTCCTAGACGTGGTCTTACACT-AAATCAAATA-CG
** *
70677576 ATGCCAGTGTCCTAGACAG-GGTCTTACACGAAATCAAATACG
1 ATGCCAACGTCCTAGAC-GTGGTCTTACACTAAATCAAATACG
* *
70677618 ATTCCAACGTCCCAGACGTGGTCTTACACATAAATCATAAGT-CG
1 ATGCCAACGTCCTAGACGTGGTCTTACAC-TAAATCA-AA-TACG
* *
70677662 ATGCCAATGTCCTAGACGTGATCTTACAC
1 ATGCCAACGTCCTAGACGTGGTCTTACAC
70677691 GAAAAGACAT
Statistics
Matches: 95, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
41 1 0.01
42 24 0.25
43 39 0.41
44 30 0.32
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCAACGTCCTAGACGTGGTCTTACACTAAATCAAATACG
Found at i:70677687 original size:86 final size:85
Alignment explanation
Indices: 70677536--70677694 Score: 214
Period size: 86 Copynumber: 1.9 Consensus size: 85
70677526 TCGTACAATG
* ** * * *
70677536 CCAACGTCCTAGACGTGGTCTTACATGTAATCAAATATTGATGCCAGTGTCCTAGACAGGGTCTT
1 CCAACGTCCCAGACGTGGTCTTACACATAATCAAATATCGATGCCAATGTCCTAGACAGGATCTT
70677601 ACACGAAATCAAATACGATT
66 ACACGAAATCAAATACGATT
*
70677621 CCAACGTCCCAGACGTGGTCTTACACATAAATCATAA-GTCGATGCCAATGTCCTAGAC-GTGAT
1 CCAACGTCCCAGACGTGGTCTTACACAT-AATCA-AATATCGATGCCAATGTCCTAGACAG-GAT
70677684 CTTACACGAAA
63 CTTACACGAAA
70677695 AGACATACCG
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
85 26 0.41
86 36 0.56
87 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (85 bp):
CCAACGTCCCAGACGTGGTCTTACACATAATCAAATATCGATGCCAATGTCCTAGACAGGATCTT
ACACGAAATCAAATACGATT
Found at i:70680648 original size:16 final size:17
Alignment explanation
Indices: 70680622--70680653 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
70680612 GAGACTATAT
70680622 TATGATTTATGAGTTTA
1 TATGATTTATGAGTTTA
70680639 TATG-TTTATGAGTTT
1 TATGATTTATGAGTTT
70680654 GTGAACTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.25, C:0.00, G:0.19, T:0.56
Consensus pattern (17 bp):
TATGATTTATGAGTTTA
Found at i:70683334 original size:42 final size:44
Alignment explanation
Indices: 70683228--70683389 Score: 157
Period size: 48 Copynumber: 3.5 Consensus size: 44
70683218 ATATCGATGT
* * *
70683228 CATATCCCATATATGGTCTTATACGAAATCTCACGTCAGTGCCGATGC
1 CATATCCCAGATATGGTCTTACACGAAATCTCA--TCAGT--CAATGC
* *
70683276 CATGTCCCAGACATGGTCTTACACGAAATCTCAT-A-TCAATGC
1 CATATCCCAGATATGGTCTTACACGAAATCTCATCAGTCAATGC
* * * *
70683318 CATATCCCAGATATGGTCTTACATGAAATCACATACCGAGGCCAACGC
1 CATATCCCAGATATGGTCTTACACGAAATCTCAT--C-A-GTCAATGC
70683366 CATATCCCAGATATGGTCTTACAC
1 CATATCCCAGATATGGTCTTACAC
70683390 TGGCACACAT
Statistics
Matches: 96, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
42 35 0.36
44 1 0.01
45 1 0.01
46 2 0.02
48 57 0.59
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (44 bp):
CATATCCCAGATATGGTCTTACACGAAATCTCATCAGTCAATGC
Found at i:70683337 original size:90 final size:90
Alignment explanation
Indices: 70683184--70683347 Score: 222
Period size: 90 Copynumber: 1.8 Consensus size: 90
70683174 GAATTCCAAA
* * ** * * *
70683184 GCCATGTCCCAGACATGGTTTTAAATGGGTCTACATATCGATGTCATATCCCATATATGGTCTTA
1 GCCATGTCCCAGACATGGTCTTAAACGAATCTACATATCAATGCCATATCCCAGATATGGTCTTA
*
70683249 TACGAAATCTCACGTCAGTGCCGAT
66 CACGAAATCTCACGTCAGTGCCGAT
*
70683274 GCCATGTCCCAGACATGGTCTTACACGAAATCT-CATATCAATGCCATATCCCAGATATGGTCTT
1 GCCATGTCCCAGACATGGTCTTAAACG-AATCTACATATCAATGCCATATCCCAGATATGGTCTT
*
70683338 ACATGAAATC
65 ACACGAAATC
70683348 ACATACCGAG
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
90 60 0.95
91 3 0.05
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (90 bp):
GCCATGTCCCAGACATGGTCTTAAACGAATCTACATATCAATGCCATATCCCAGATATGGTCTTA
CACGAAATCTCACGTCAGTGCCGAT
Found at i:70683368 original size:90 final size:90
Alignment explanation
Indices: 70683179--70683389 Score: 219
Period size: 90 Copynumber: 2.3 Consensus size: 90
70683169 ATATAGAATT
* * * ** * * *
70683179 CCAAAGCCATGTCCCAGACATGGTTTTAAATGGGTCTACATATCGATGTCATATCCCATATATGG
1 CCAAAGCCATGTCCCAGACATGGTCTTACACGAATCTACATATCAATGCCATATCCCAGATATGG
* * **
70683244 TCTTATACGAAATCTCACGTCAGTG
66 TCTTACACGAAATCACACACCAGTG
* *
70683269 CCGATGCCATGTCCCAGACATGGTCTTACACGAAATCT-CATATCAATGCCATATCCCAGATATG
1 CCAAAGCCATGTCCCAGACATGGTCTTACACG-AATCTACATATCAATGCCATATCCCAGATATG
* *
70683333 GTCTTACATGAAATCACATACCGAG-G
65 GTCTTACACGAAATCACACACC-AGTG
* * *
70683359 CCAACGCCATATCCCAGATATGGTCTTACAC
1 CCAAAGCCATGTCCCAGACATGGTCTTACAC
70683390 TGGCACACAT
Statistics
Matches: 99, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
90 94 0.95
91 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (90 bp):
CCAAAGCCATGTCCCAGACATGGTCTTACACGAATCTACATATCAATGCCATATCCCAGATATGG
TCTTACACGAAATCACACACCAGTG
Found at i:70683416 original size:48 final size:49
Alignment explanation
Indices: 70683312--70683441 Score: 138
Period size: 48 Copynumber: 2.7 Consensus size: 49
70683302 AATCTCATAT
** * *
70683312 CAATGCCATATCCCAGATATGGTCTTACA-TGAAATCACATACCGAGGC
1 CAATGCCATATCCCAGATATGGTCTTACACTGGCATCACATACCAAGAC
* * *
70683360 CAACGCCATATCCCAGATATGGTCTTACACTGGCA-CACATATCAATAC
1 CAATGCCATATCCCAGATATGGTCTTACACTGGCATCACATACCAAGAC
** * * *
70683408 TGATGCCATGTCCTAGACATGGTCTTACACTGGC
1 CAATGCCATATCCCAGATATGGTCTTACACTGGC
70683442 TCTCATTAAT
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
48 65 0.96
49 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
CAATGCCATATCCCAGATATGGTCTTACACTGGCATCACATACCAAGAC
Found at i:70690635 original size:4 final size:5
Alignment explanation
Indices: 70690610--70690638 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
70690600 TTGTGCTTCT
70690610 TTTTA TTTTA TTTTA TTTTA -TTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
70690639 CATAGTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:70692922 original size:29 final size:29
Alignment explanation
Indices: 70692856--70692943 Score: 99
Period size: 29 Copynumber: 3.1 Consensus size: 29
70692846 AATTTCACAT
* *
70692856 ACCTGTATCTGGCCCATTAAGCCC-AATC
1 ACCTGTATATGGCCCATTAGGCCCAAATC
** *
70692884 ATAT-TCATATGGCCCCTTAGGCCCAAATC
1 ACCTGT-ATATGGCCCATTAGGCCCAAATC
*
70692913 ACCTGTATATGACCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAGGCCCAAATC
70692942 AC
1 AC
70692944 ATTTATATTG
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
27 1 0.02
28 17 0.35
29 29 0.60
30 1 0.02
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.25
Consensus pattern (29 bp):
ACCTGTATATGGCCCATTAGGCCCAAATC
Found at i:70694354 original size:49 final size:49
Alignment explanation
Indices: 70694282--70694465 Score: 215
Period size: 49 Copynumber: 3.7 Consensus size: 49
70694272 CGAAGCTATT
* * *
70694282 TGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAATAATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC
* * * * *
70694331 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATTATC
* ** * * *
70694382 GGGTACGTATGGTAGCCTGCACTTAGCACTACACATGCCACCAATTATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC
*
70694431 CGGTACACATAGTAGCCTGCACTTAGTACTACACA
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACA
70694466 CGTGACCTCA
Statistics
Matches: 109, Mismatches: 24, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
49 71 0.65
50 2 0.02
51 36 0.33
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC
Found at i:70694403 original size:100 final size:100
Alignment explanation
Indices: 70694283--70694470 Score: 304
Period size: 100 Copynumber: 1.9 Consensus size: 100
70694273 GAAGCTATTT
* * * * *
70694283 GGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGCACTACACATGCCACCAATAATCCGGTACACATAGTAGCC
70694348 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
* * *
70694383 GGTACGTATGGTAGCCTGCACTTAGCACTACACATGCCACCAATTATCCGGTACACATAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGCACTACACATGCCACCAATAATCCGGTACACATAGTAGCC
70694448 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
70694471 CCTCACAATA
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 80 1.00
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGCACTACACATGCCACCAATAATCCGGTACACATAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:70697259 original size:56 final size:56
Alignment explanation
Indices: 70697173--70697348 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
70697163 ACAAAGGATG
70697173 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
70697229 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
70697285 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
70697341 ATGGGCAA
1 ATGGGCAA
70697349 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:70698849 original size:47 final size:47
Alignment explanation
Indices: 70698795--70699310 Score: 642
Period size: 47 Copynumber: 10.6 Consensus size: 47
70698785 TATTTGAATA
*
70698795 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
70698842 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
70698891 AATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
70698938 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * * *
70698985 AATGTGAAAGTGATGAATGTGAAAGTGTATATATG-TGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG-T--ATAT--ATGTG-ATA-AGGCCGA-ATGGCC--A------ATGTGATG
70699047 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
70699094 AATGTGAAAGTGTATATATATGTGATAAGGTCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
70699143 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
70699190 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
70699237 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
70699284 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
70699311 TCCCGAAGGG
Statistics
Matches: 418, Mismatches: 28, Indels: 46
0.85 0.06 0.09
Matches are distributed among these distances:
46 1 0.00
47 264 0.63
48 1 0.00
49 90 0.22
50 4 0.01
52 4 0.01
53 6 0.01
54 7 0.02
55 7 0.02
56 6 0.01
57 4 0.01
59 3 0.01
61 1 0.00
62 20 0.05
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:70698972 original size:31 final size:31
Alignment explanation
Indices: 70698937--70699034 Score: 96
Period size: 31 Copynumber: 3.2 Consensus size: 31
70698927 CCGATGTGAT
70698937 GAATGTGAAAGTGTATATATGTGATAAGGCC
1 GAATGTGAAAGTGTATATATGTGATAAGGCC
* **
70698968 GAATG-GCCAA-TGTGATGA-ATGTGA-AAGTGAT
1 GAATGTG-AAAGTGT-AT-ATATGTGATAAG-GCC
70698999 GAATGTGAAAGTGTATATATGTGATAAGGCC
1 GAATGTGAAAGTGTATATATGTGATAAGGCC
*
70699030 TAATG
1 GAATG
70699035 GCCGATGTGA
Statistics
Matches: 52, Mismatches: 7, Indels: 16
0.69 0.09 0.21
Matches are distributed among these distances:
30 8 0.15
31 36 0.69
32 8 0.15
ACGTcount: A:0.36, C:0.06, G:0.30, T:0.29
Consensus pattern (31 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:70699007 original size:62 final size:62
Alignment explanation
Indices: 70698932--70699058 Score: 236
Period size: 62 Copynumber: 2.0 Consensus size: 62
70698922 AATGGCCGAT
70698932 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
70698994 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
70699056 GTG
1 GTG
70699059 TATATATGTG
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.34, C:0.06, G:0.31, T:0.28
Consensus pattern (62 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:70699016 original size:109 final size:109
Alignment explanation
Indices: 70698885--70699197 Score: 474
Period size: 109 Copynumber: 3.0 Consensus size: 109
70698875 AATGGCCGAT
70698885 GTGATGAATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTG
70698950 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
66 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
70698994 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTG
70699059 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-AA
66 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
70699102 ---A-G--TGT---A---TATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAACA-T
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAA-AGT
* *
70699154 GTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
65 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
70699198 CATGCATATA
Statistics
Matches: 196, Mismatches: 6, Indels: 16
0.90 0.03 0.07
Matches are distributed among these distances:
96 81 0.41
97 2 0.01
99 1 0.01
102 3 0.02
104 1 0.01
105 1 0.01
108 2 0.01
109 105 0.54
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.29
Consensus pattern (109 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:70699022 original size:16 final size:15
Alignment explanation
Indices: 70698932--70699011 Score: 67
Period size: 15 Copynumber: 5.2 Consensus size: 15
70698922 AATGGCCGAT
70698932 GTGATGAATGTGAAA
1 GTGATGAATGTGAAA
70698947 GTGTAT-ATATGTGATAA
1 GTG-ATGA-ATGTGA-AA
** *
70698964 G-GCCGAATG-GCCAAT
1 GTGATGAATGTG--AAA
70698979 GTGATGAATGTGAAA
1 GTGATGAATGTGAAA
70698994 GTGATGAATGTGAAA
1 GTGATGAATGTGAAA
70699009 GTG
1 GTG
70699012 TATATATGTG
Statistics
Matches: 51, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
14 1 0.02
15 29 0.57
16 17 0.33
17 4 0.08
ACGTcount: A:0.35, C:0.05, G:0.33, T:0.28
Consensus pattern (15 bp):
GTGATGAATGTGAAA
Found at i:70699036 original size:156 final size:158
Alignment explanation
Indices: 70698836--70699150 Score: 562
Period size: 156 Copynumber: 2.0 Consensus size: 158
70698826 AATGGCCAAT
70698836 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 GTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * *
70698901 TGTATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAG
65 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATATATGTGATAAG
70698965 GCCGAATGGCCAATGTGATGAATGTGAAA
130 GCCGAATGGCCAATGTGATGAATGTGAAA
70698994 GTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
70699058 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
66 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATATATATGTGATAAG
*
70699123 GTCGAATGGCCAATGTGATGAATGTGAA
130 GCCGAATGGCCAATGTGATGAATGTGAA
70699151 CATGTGTATG
Statistics
Matches: 151, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
156 91 0.60
158 60 0.40
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.30
Consensus pattern (158 bp):
GTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATATATGTGATAAGG
CCGAATGGCCAATGTGATGAATGTGAAA
Found at i:70699147 original size:205 final size:204
Alignment explanation
Indices: 70698795--70699197 Score: 693
Period size: 205 Copynumber: 2.0 Consensus size: 204
70698785 TATTTGAATA
70698795 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG-ATATA
* * *
70698860 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTCTAAT
65 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTCGAAT
*
70698925 GGCCGATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
130 GGCCAATGTGATGAATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
70698989 TGAAAGTGATG
194 TGAAAGTGATG
*
70699000 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATAT
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGATATAT
70699064 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGTCGAA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGTCGAA
* *
70699129 TGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
129 TGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
70699194 TGAA
194 TGAA
70699198 CATGCATATA
Statistics
Matches: 188, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
203 45 0.24
205 142 0.76
206 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (204 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGATATAT
ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTCGAATG
GCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
AAAGTGATG
Found at i:70699165 original size:143 final size:141
Alignment explanation
Indices: 70698994--70699310 Score: 494
Period size: 143 Copynumber: 2.2 Consensus size: 141
70698984 GAATGTGAAA
* *
70698994 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-T
* *
70699058 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
65 GCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAG
*
70699123 GTCGAATGGCCAAT
128 GCCGAATGGCCAAT
* *
70699137 GTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
1 GTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
70699201 GCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
65 GCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
70699266 CGAATGGCCAAT
130 CGAATGGCCAAT
* * *
70699278 GTGATGGATGTGGAAGTGTATAAATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAG
70699311 TCCCGAAGGG
Statistics
Matches: 159, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
140 1 0.01
141 54 0.34
143 102 0.64
144 2 0.01
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (141 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
GAATGGCCAAT
Found at i:70699240 original size:252 final size:252
Alignment explanation
Indices: 70698795--70699248 Score: 777
Period size: 252 Copynumber: 1.8 Consensus size: 252
70698785 TATTTGAATA
*
70698795 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * *
70698860 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTCTAAT
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
* * *
70698925 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT
131 GGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGT
70698990 GAAAGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
196 GAAAGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
70699047 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
70699112 TATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAA
70699176 TGGCCAATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAT
130 TGGCCAATGTGATGAATGTGAA-AGTGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAT
70699240 GTGAAAGTG
194 GTGAAAGTG
70699249 TATATATGTG
Statistics
Matches: 189, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
252 187 0.99
253 2 0.01
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (252 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
GGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGT
GAAAGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:70704957 original size:32 final size:32
Alignment explanation
Indices: 70704898--70704959 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
70704888 CTAACACCTA
* *
70704898 ACACCTAAACCTTAAACCCCAACCCTTAAACC
1 ACACCTAAACCATAAACCCCAAACCTTAAACC
* * *
70704930 ACACTTAAACCATAATCCCTAAACCTTAAA
1 ACACCTAAACCATAAACCCCAAACCTTAAA
70704960 ATAGTAACTC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.44, C:0.37, G:0.00, T:0.19
Consensus pattern (32 bp):
ACACCTAAACCATAAACCCCAAACCTTAAACC
Found at i:70705635 original size:41 final size:41
Alignment explanation
Indices: 70705485--70705628 Score: 227
Period size: 41 Copynumber: 3.5 Consensus size: 41
70705475 GTTATATGAC
*
70705485 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATTCTCTGGT
* *
70705526 TTTTAGCGTCGCTTTACCAAAAGCGCCGCTAATTCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATTCTCTGGT
* *
70705567 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTTCT-TTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATTCTCTGGT
*
70705607 TTTTAGCGGCGTTTTAACAAAA
1 TTTTAGCGGCGTTTTACCAAAA
70705629 AACGCCGGTA
Statistics
Matches: 95, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 24 0.25
41 71 0.75
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATTCTCTGGT
Found at i:70705650 original size:41 final size:41
Alignment explanation
Indices: 70705485--70705661 Score: 218
Period size: 41 Copynumber: 4.4 Consensus size: 41
70705475 GTTATATGAC
*
70705485 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGT
* *
70705526 TTTTAGCGTCGCTTTACCAAAAGCGCCGCTAATT-CTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCT-ATTGCTCTGGT
* *
70705567 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTTCT-TTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGT
* * * *
70705607 TTTTAGCGGCGTTTTAACAAAAAACGCCGGTATTGCTC-CG-
1 TTTTAGCGGCGTTTT-ACCAAAAGCGCCGCTATTGCTCTGGT
*
70705647 TTTTAGTGGCGTTTT
1 TTTTAGCGGCGTTTT
70705662 TGGTAAAACG
Statistics
Matches: 120, Mismatches: 12, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
40 35 0.29
41 83 0.69
42 2 0.02
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGT
Found at i:70714968 original size:46 final size:47
Alignment explanation
Indices: 70714835--70715134 Score: 187
Period size: 47 Copynumber: 6.4 Consensus size: 47
70714825 CGATGTTATA
* * * *
70714835 TCCCAGACATGGTCTTACACTGGCTCAC-ATCGCAAGTCGATGCCATG
1 TCCCAGACATGGTCTTACACAGGCTTACGA-CTCAAGCCGATGCCATG
** * * *
70714882 AGCCAGACATGGTCTTACACTGAC-TATCGTCTCATAGCCGATG-CATG
1 TCCCAGACATGGTCTTACACAGGCTTA-CGACTCA-AGCCGATGCCATG
70714929 TCCCAGACAT-GTCTTACACAGGCTTACGACTCAAGGCCGATG-CATG
1 TCCCAGACATGGTCTTACACAGGCTTACGACTCAA-GCCGATGCCATG
* * * *
70714975 TCCCAAACAT-GTCTTACACTA-GCACT-CGTCTCAATGCCAATGCCATG
1 TCCCAGACATGGTCTTACAC-AGGC-TTACGACTCAA-GCCGATGCCATG
* * * * **
70715022 TCCTAGACATGGTCTTACACTGGCTCT-CATAATGTAGCCGATG-CATG
1 TCCCAGACATGGTCTTACACAGGCT-TAC-GACTCAAGCCGATGCCATG
* * *
70715069 TCCTAGACAT-GTCTTACACTA-GC--ACTCATCTCAATACCGATGCCATG
1 TCCCAGACATGGTCTTACAC-AGGCTTAC-GA-CTCAA-GCCGATGCCATG
70715116 TCCCAGACATGGTCTTACA
1 TCCCAGACATGGTCTTACA
70715135 TTGGCCCACA
Statistics
Matches: 200, Mismatches: 35, Indels: 35
0.74 0.13 0.13
Matches are distributed among these distances:
44 2 0.01
45 3 0.01
46 79 0.40
47 80 0.40
48 34 0.17
49 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (47 bp):
TCCCAGACATGGTCTTACACAGGCTTACGACTCAAGCCGATGCCATG
Found at i:70715062 original size:94 final size:94
Alignment explanation
Indices: 70714835--70715139 Score: 290
Period size: 94 Copynumber: 3.3 Consensus size: 94
70714825 CGATGTTATA
* * * * ** *
70714835 TCCCAGACATGGTCTTACACTGGCTCACAT--CGCAAGTCGATGCCATGAGCCAGACATGGTCTT
1 TCCCAGACATGGTCTTACACTGGCTCTCATAATG-TAGCCGATG-CATGTCCCAAACAT-GTCTT
* *
70714898 ACACT-G-ACT-ATCGTCTCATAGCCGATG-CATG
63 ACACTAGCACTCATC-TC-AATA-CCAATGCCATG
*
70714929 TCCCAGACAT-GTCTTACACAGGCT-TACGACTCAA-G--GCCGATGCATGTCCCAAACATGTCT
1 TCCCAGACATGGTCTTACACTGGCTCT-C-A-T-AATGTAGCCGATGCATGTCCCAAACATGTCT
* *
70714989 TACACTAGCACTCGTCTCAATGCCAATGCCATG
62 TACACTAGCACTCATCTCAATACCAATGCCATG
* * *
70715022 TCCTAGACATGGTCTTACACTGGCTCTCATAATGTAGCCGATGCATGTCCTAGACATGTCTTACA
1 TCCCAGACATGGTCTTACACTGGCTCTCATAATGTAGCCGATGCATGTCCCAAACATGTCTTACA
*
70715087 CTAGCACTCATCTCAATACCGATGCCATG
66 CTAGCACTCATCTCAATACCAATGCCATG
*
70715116 TCCCAGACATGGTCTTACATTGGC
1 TCCCAGACATGGTCTTACACTGGC
70715140 CCACACACAA
Statistics
Matches: 177, Mismatches: 19, Indels: 30
0.78 0.08 0.13
Matches are distributed among these distances:
91 2 0.01
92 17 0.10
93 42 0.24
94 111 0.63
95 4 0.02
97 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (94 bp):
TCCCAGACATGGTCTTACACTGGCTCTCATAATGTAGCCGATGCATGTCCCAAACATGTCTTACA
CTAGCACTCATCTCAATACCAATGCCATG
Found at i:70719222 original size:88 final size:88
Alignment explanation
Indices: 70719065--70719244 Score: 270
Period size: 88 Copynumber: 2.0 Consensus size: 88
70719055 CACATGGGTG
* *
70719065 TGTGGCATGGCCATGTGTTCAAGTCAGAGAGTTACACGGGGTCGAACACAGTCTCTAGAACAAGC
1 TGTGGCATGGCCATGTGTTCAAGTCAGAGAGTTACACGGGGTCGAACACAGCCTCTAGAACAAGA
*
70719130 GTGTCCCTTAGACCACACGGGCA
66 GTGTCCCTTAGAACACACGGGCA
* * * * *
70719153 TGTGGCATTGCCGTGTGTTCAAGTCAGAGAGTTACACGGGGTCGAACACGGCCTCTAGCACAGGA
1 TGTGGCATGGCCATGTGTTCAAGTCAGAGAGTTACACGGGGTCGAACACAGCCTCTAGAACAAGA
* *
70719218 GTGTCCCTTGGAACACACGGGCG
66 GTGTCCCTTAGAACACACGGGCA
70719241 TGTG
1 TGTG
70719245 AGCCCTGCAC
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 82 1.00
ACGTcount: A:0.23, C:0.24, G:0.31, T:0.21
Consensus pattern (88 bp):
TGTGGCATGGCCATGTGTTCAAGTCAGAGAGTTACACGGGGTCGAACACAGCCTCTAGAACAAGA
GTGTCCCTTAGAACACACGGGCA
Found at i:70719598 original size:42 final size:42
Alignment explanation
Indices: 70719516--70719598 Score: 94
Period size: 42 Copynumber: 2.0 Consensus size: 42
70719506 AGGTGTAGGA
* * ** * *
70719516 TTCACATGACCAAGACATACGCCCGAGTGTTGGGCTGTGTGG
1 TTCACACGACCAAGACATACGCCCGAGTCTCAGCCCGTGTGG
* *
70719558 TTCACACGACTAAGACATACGCCCGTGTCTCAGCCCGTGTG
1 TTCACACGACCAAGACATACGCCCGAGTCTCAGCCCGTGTG
70719599 ACCAATTTTG
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.23
Consensus pattern (42 bp):
TTCACACGACCAAGACATACGCCCGAGTCTCAGCCCGTGTGG
Found at i:70731473 original size:50 final size:50
Alignment explanation
Indices: 70731398--70731496 Score: 189
Period size: 50 Copynumber: 2.0 Consensus size: 50
70731388 AACACAAACC
70731398 TCATATTCATATACTTGGATCATGGATCATCATTTGAACATATACTTACA
1 TCATATTCATATACTTGGATCATGGATCATCATTTGAACATATACTTACA
*
70731448 TCATATTTATATACTTGGATCATGGATCATCATTTGAACATATACTTAC
1 TCATATTCATATACTTGGATCATGGATCATCATTTGAACATATACTTAC
70731497 CTTTCATTTT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.39
Consensus pattern (50 bp):
TCATATTCATATACTTGGATCATGGATCATCATTTGAACATATACTTACA
Done.