Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 211 of 297
Found at i:71844455 original size:46 final size:47
Alignment explanation
Indices: 71844388--71844702 Score: 222
Period size: 46 Copynumber: 6.7 Consensus size: 47
71844378 ATTGTGGGCT
* * *
71844388 AGTGTAAGA-CATGTTTCGGACAT-GCATCGGCCATATTTGA-GAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TATGTGATGAGTC
* * * * * *
71844433 AGTGTAAGACCATGTCTGGGACATAGCATCAGCCT-CGGGATATAGGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTATGTGAT-GA-GTC
* * * * * * *
71844481 AGTATAAGA-CATGTCTGGGACAT-ACATCAGCCT-CGAGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTATGTGA--TGAGTC
* * ** *
71844527 AGTATAAGA-CATATCTGGGACAT-GCATCGG-CTATGAAATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTATGTGATGAGTC
71844571 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGGATATGTGA-GAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-C---TATGTGATGAGTC
* **
71844620 TAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGGTGATGTTAGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTATGTGATG--AGTC
71844670 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
71844703 AACTTGCCCG
Statistics
Matches: 221, Mismatches: 29, Indels: 36
0.77 0.10 0.13
Matches are distributed among these distances:
44 11 0.05
45 26 0.12
46 71 0.32
47 25 0.11
48 12 0.05
49 36 0.16
50 35 0.16
51 5 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTATGTGATGAGTC
Found at i:71844682 original size:99 final size:93
Alignment explanation
Indices: 71844388--71844702 Score: 304
Period size: 93 Copynumber: 3.3 Consensus size: 93
71844378 ATTGTGGGCT
* * *
71844388 AGTGTAAGACATGTTTCGGACATGCATCGGC-C-ATATTTGAGAG-TCAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCGATATGTGAGAGCT-AGTGTAAGACCATGTCT
* *
71844450 GGGACATAGCATCAGCCTCGGGATATAGGCC
65 GGGACAT-GCATCAGCCTCGGGATGTA-GTC
* * * * * * * *
71844481 AGTATAAGACATGTCTGGGACATACATCAGCCTCGAGACGT-A-AGCCAGTATAAGA-CATATCT
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCTCGATATGTGAGAGCTAGTGTAAGACCATGTCT
* * **
71844543 GGGACATGCATC-GGCTATGAAATGT-GTC
65 GGGACATGCATCAGCCT-CGGGATGTAGTC
71844571 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGGATATGTGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTC-GATATGTGAGAGCTAGTGTAAGACCATGT
71844636 CTGGGACATGGCATCAGCCTCGGTGATGTTAGTC
63 CTGGGACAT-GCATCAGCCTCGG-GATG-TAGTC
71844670 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
71844703 AACTTGCCCG
Statistics
Matches: 177, Mismatches: 29, Indels: 26
0.76 0.12 0.11
Matches are distributed among these distances:
90 10 0.06
91 21 0.12
92 18 0.10
93 38 0.21
94 23 0.13
95 15 0.08
96 9 0.05
97 6 0.03
98 1 0.01
99 36 0.20
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTCGATATGTGAGAGCTAGTGTAAGACCATGTCTG
GGACATGCATCAGCCTCGGGATGTAGTC
Found at i:71852421 original size:6 final size:6
Alignment explanation
Indices: 71852410--71852681 Score: 258
Period size: 6 Copynumber: 44.8 Consensus size: 6
71852400 AACCAAAATG
*
71852410 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
71852458 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
71852507 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
71852555 AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC AGTAA-C
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AG-AATC
* *
71852604 AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC
* *
71852652 AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
71852682 GTGAATGCAA
Statistics
Matches: 221, Mismatches: 22, Indels: 46
0.76 0.08 0.16
Matches are distributed among these distances:
5 16 0.07
6 186 0.84
7 15 0.07
8 4 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:71852425 original size:30 final size:30
Alignment explanation
Indices: 71852410--71852681 Score: 363
Period size: 30 Copynumber: 9.4 Consensus size: 30
71852400 AACCAAAATG
*
71852410 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
71852440 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
71852470 AGAATCAGAATCAGAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
*
71852495 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
71852525 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
71852555 AGAATCAGAATCAGAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
*
71852580 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
71852610 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
71852640 AGAATCAGAATCAGAATTACGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
71852671 AGAATCAGAAT
1 AGAATCAGAAT
71852682 GTGAATGCAA
Statistics
Matches: 215, Mismatches: 10, Indels: 33
0.83 0.04 0.13
Matches are distributed among these distances:
24 4 0.02
25 38 0.18
26 2 0.01
27 2 0.01
28 2 0.01
29 3 0.01
30 138 0.64
31 26 0.12
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:71852510 original size:85 final size:85
Alignment explanation
Indices: 71852410--71852681 Score: 526
Period size: 85 Copynumber: 3.2 Consensus size: 85
71852400 AACCAAAATG
*
71852410 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
71852475 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTAGGTGAC
71852495 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
71852560 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTAGGTGAC
71852580 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
*
71852645 CAGAATCAGAATTACGTGAC
66 CAGAATCAGAATTAGGTGAC
71852665 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
71852682 GTGAATGCAA
Statistics
Matches: 185, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 185 1.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
CAGAATCAGAATTAGGTGAC
Found at i:71852836 original size:27 final size:26
Alignment explanation
Indices: 71852799--71852864 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
71852789 AGCATGGCTG
*
71852799 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
71852825 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
71852852 CCAGAATCAGATA
1 CCAGAA-CAGATA
71852865 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:71852869 original size:27 final size:27
Alignment explanation
Indices: 71852799--71852872 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
71852789 AGCATGGCTG
* *
71852799 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
71852825 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
71852852 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
71852873 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:71852879 original size:27 final size:27
Alignment explanation
Indices: 71852823--71852880 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
71852813 GTGACAGAGT
* * *
71852823 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
71852850 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
71852877 CACC
1 CACC
71852881 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:71853085 original size:22 final size:22
Alignment explanation
Indices: 71853037--71853095 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
71853027 GTAAATACGT
*
71853037 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
71853059 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
71853081 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
71853096 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:71853262 original size:27 final size:26
Alignment explanation
Indices: 71853183--71853265 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
71853173 TCGATCGGTC
* * *
71853183 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
71853209 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
71853236 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
71853263 AAC
1 AAC
71853266 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:71853494 original size:27 final size:27
Alignment explanation
Indices: 71853464--71853659 Score: 239
Period size: 27 Copynumber: 7.3 Consensus size: 27
71853454 GGGGCAAAAT
* * *
71853464 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
71853491 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
71853518 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
71853545 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
71853572 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
71853599 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
71853626 AGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
71853653 AGTAATT
1 GGTAATT
71853660 TCACAATCAA
Statistics
Matches: 148, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 148 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:71853694 original size:27 final size:27
Alignment explanation
Indices: 71853664--71854115 Score: 610
Period size: 27 Copynumber: 16.8 Consensus size: 27
71853654 GTAATTTCAC
*
71853664 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
71853691 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
71853718 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
71853745 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
71853772 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
71853799 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
71853826 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
71853853 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
71853880 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
71853907 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
71853934 AA-CTGAGGGTATAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
71853961 AATCGAGGGTAAAACGATAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
71853988 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
71854015 AATCAAGGGTAAATA--GTAATTCTATA
1 AATCGAGGGTAAA-ACGGTAATTCTGTA
* *
71854041 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
71854068 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
71854095 AATCGAGGGTAAAACGGTAAT
1 AATCGAGGGTAAAACGGTAAT
71854116 GTAAAACAGT
Statistics
Matches: 377, Mismatches: 37, Indels: 22
0.86 0.08 0.05
Matches are distributed among these distances:
25 1 0.00
26 27 0.07
27 344 0.91
28 5 0.01
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:71854120 original size:40 final size:40
Alignment explanation
Indices: 71854076--71854155 Score: 126
Period size: 40 Copynumber: 2.0 Consensus size: 40
71854066 TAAACTGAGG
* *
71854076 GTAAAACGGTAATTCTGTAAA-TCGAGGGTAAAACGGTAAT
1 GTAAAACAGTAATTCTGTAAACT-GAGGGTAAAACGATAAT
71854116 GTAAAACAGTAATTCTGTAAACTGAGGGTAAAACGATAAT
1 GTAAAACAGTAATTCTGTAAACTGAGGGTAAAACGATAAT
71854156 TCTATAAATC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 36 0.97
41 1 0.03
ACGTcount: A:0.42, C:0.10, G:0.23, T:0.25
Consensus pattern (40 bp):
GTAAAACAGTAATTCTGTAAACTGAGGGTAAAACGATAAT
Found at i:71854127 original size:67 final size:67
Alignment explanation
Indices: 71854049--71854182 Score: 223
Period size: 67 Copynumber: 2.0 Consensus size: 67
71854039 TAAATCGAGG
* * * *
71854049 GTAAAACAGTAATTCTATAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTA
1 GTAAAACAGTAATTCTATAAACTGAGGGTAAAACGATAATTCTATAAATCGAGGATAAAACAGTA
71854114 AT
66 AT
*
71854116 GTAAAACAGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTATAAATCGAGGATAAAACAGTA
1 GTAAAACAGTAATTCTATAAACTGAGGGTAAAACGATAATTCTATAAATCGAGGATAAAACAGTA
71854181 AT
66 AT
71854183 TCTGTAAACT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 62 1.00
ACGTcount: A:0.44, C:0.10, G:0.20, T:0.25
Consensus pattern (67 bp):
GTAAAACAGTAATTCTATAAACTGAGGGTAAAACGATAATTCTATAAATCGAGGATAAAACAGTA
AT
Found at i:71854145 original size:94 final size:94
Alignment explanation
Indices: 71854029--71854205 Score: 263
Period size: 94 Copynumber: 1.9 Consensus size: 94
71854019 AAGGGTAAAT
* *
71854029 AGTAATTCTATAAATCGAGGGTAAAAC-AGTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCT
1 AGTAATTCTATAAATCGAGGGTAAAACGA-TAATTCTATAAATC-GAGGATAAAACAGTAATTCT
71854092 GTAAA-TCGAGGGTAAAACGGTAATGTAAAAC
64 GTAAACT-GAGGGTAAAACGGTAATGTAAAAC
*
71854123 AGTAATTCTGTAAA-CTGAGGGTAAAACGATAATTCTATAAATCGAGGATAAAACAGTAATTCTG
1 AGTAATTCTATAAATC-GAGGGTAAAACGATAATTCTATAAATCGAGGATAAAACAGTAATTCTG
71854187 TAAACTGAGGGTAAAACGG
65 TAAACTGAGGGTAAAACGG
71854206 CAATTCTATA
Statistics
Matches: 76, Mismatches: 3, Indels: 8
0.87 0.03 0.09
Matches are distributed among these distances:
93 1 0.01
94 72 0.95
95 3 0.04
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.25
Consensus pattern (94 bp):
AGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGATAAAACAGTAATTCTGT
AAACTGAGGGTAAAACGGTAATGTAAAAC
Found at i:71854147 original size:27 final size:27
Alignment explanation
Indices: 71854116--71854217 Score: 127
Period size: 27 Copynumber: 3.8 Consensus size: 27
71854106 AAACGGTAAT
*
71854116 GTAAAACAGTAATTCTGTAAACTGAGG
1 GTAAAACAGTAATTCTATAAACTGAGG
71854143 GTAAAAC-GATAATTCTATAAA-TCGAGG
1 GTAAAACAG-TAATTCTATAAACT-GAGG
* *
71854170 ATAAAACAGTAATTCTGTAAACTGAGG
1 GTAAAACAGTAATTCTATAAACTGAGG
* *
71854197 GTAAAACGGCAATTCTATAAA
1 GTAAAACAGTAATTCTATAAA
71854218 TCGAGAGTAC
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
26 2 0.03
27 60 0.94
28 2 0.03
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (27 bp):
GTAAAACAGTAATTCTATAAACTGAGG
Found at i:71854237 original size:54 final size:54
Alignment explanation
Indices: 71854117--71854222 Score: 194
Period size: 54 Copynumber: 2.0 Consensus size: 54
71854107 AACGGTAATG
*
71854117 TAAAACAGTAATTCTGTAAACTGAGGGTAAAACGATAATTCTATAAATCGAGGA
1 TAAAACAGTAATTCTGTAAACTGAGGGTAAAACGACAATTCTATAAATCGAGGA
*
71854171 TAAAACAGTAATTCTGTAAACTGAGGGTAAAACGGCAATTCTATAAATCGAG
1 TAAAACAGTAATTCTGTAAACTGAGGGTAAAACGACAATTCTATAAATCGAG
71854223 AGTACTTTGG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.43, C:0.12, G:0.19, T:0.25
Consensus pattern (54 bp):
TAAAACAGTAATTCTGTAAACTGAGGGTAAAACGACAATTCTATAAATCGAGGA
Found at i:71867559 original size:46 final size:47
Alignment explanation
Indices: 71867389--71867662 Score: 202
Period size: 50 Copynumber: 5.8 Consensus size: 47
71867379 ACTTGTGTGA
** * *
71867389 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCATA-TTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGG-CATAGAGACGAGT
* *
71867435 GCCAGTATAAGACCATGTCTGGGACATGGCATCGGCATAGAGACGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCATAGAGACGAGT
71867483 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGC-TA-AG-CGATGT
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATAGAGACGA-GT
* * ** ** * * *
71867527 GTTAGTGTAAGACTACGTCTGGGACATGGCATCAACACGGATATGCAAGA
1 GCTAGTGTAAGAC-ATGTCTGGGACATGGCATCGGCATAGAGA--CGAGT
* * * * *
71867577 GCTAGTATAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGA-T
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCATAGA-GACGAGT
* * *
71867625 AGCCAGTGTAAGACCATGTCGGGGACATGGCATTGGCA
1 -GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCA
71867663 GTTACCGCAT
Statistics
Matches: 180, Mismatches: 34, Indels: 25
0.75 0.14 0.10
Matches are distributed among these distances:
43 3 0.02
44 16 0.09
45 14 0.08
46 24 0.13
47 32 0.18
48 22 0.12
49 32 0.18
50 33 0.18
51 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATAGAGACGAGT
Found at i:71867581 original size:94 final size:93
Alignment explanation
Indices: 71867387--71867657 Score: 235
Period size: 94 Copynumber: 2.8 Consensus size: 93
71867377 GTACTTGTGT
* *
71867387 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGAGAGCCAGTATAAGACCATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATA-TACGAGAGCCAGTATAAGACCACG
** * *
71867452 TCTGGGACATGGCATCGGCATAGAGACGA
65 TCTGGGACATGGCATCAACACAGAGACAA
* * ** * *
71867481 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-TA-AGCGATGTGTTAGTGTAAGACTAC
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATA-CGA-GAGCCAGTATAAGACCAC
* *
71867543 GTCTGGGACATGGCATCAACACGGATATGCAA
64 GTCTGGGACATGGCATCAACACAGAGA--CAA
* * * * *
71867575 GAGCTAGTATAAGACCATGTCTGGGACATGGCATCGACC-TCGATGATGATAGCCAGTGTAAGAC
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAT--AT-ACGAGAGCCAGTATAAGAC
* *
71867639 CATGTCGGGGACATGGCAT
61 CACGTCTGGGACATGGCAT
71867658 TGGCAGTTAC
Statistics
Matches: 141, Mismatches: 25, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
90 1 0.01
91 2 0.01
92 36 0.26
93 1 0.01
94 48 0.34
95 14 0.10
96 6 0.04
97 2 0.01
99 28 0.20
100 2 0.01
101 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (93 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATACGAGAGCCAGTATAAGACCACGT
CTGGGACATGGCATCAACACAGAGACAA
Found at i:71867598 original size:50 final size:49
Alignment explanation
Indices: 71867387--71867657 Score: 181
Period size: 49 Copynumber: 5.7 Consensus size: 49
71867377 GTACTTGTGT
** *
71867387 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAT--ATTATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACC-TCGATGATGA
* * ** * * *
71867433 GAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCATAGA-GACGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGATGATGA
* ** * *
71867481 GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATC-GGCT--AAG-CGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGATGATGA
* * * * *
71867524 TGTGTTAGTGTAAGACTACGTCTGGGACATGGCATCAACAC-GGAT-ATGCAA
1 -GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAAC-CTCGATGATG--A
* *
71867575 GAGCTAGTATAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGATGATGA
* * *
71867624 TAGCCAGTGTAAGACCATGTCGGGGACATGGCAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
71867658 TGGCAGTTAC
Statistics
Matches: 180, Mismatches: 28, Indels: 31
0.75 0.12 0.13
Matches are distributed among these distances:
43 4 0.02
44 14 0.08
45 14 0.08
46 22 0.12
47 29 0.16
48 23 0.13
49 35 0.19
50 35 0.19
51 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (49 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCGATGATGA
Found at i:71868089 original size:129 final size:129
Alignment explanation
Indices: 71867859--71868117 Score: 509
Period size: 129 Copynumber: 2.0 Consensus size: 129
71867849 TCAAGCCTAT
71867859 GTTTATATTTGTACAAAGAGCTTGATGATCATAGTAAAATTGTTGTTGTATAATTATTTATCTGC
1 GTTTATATTTGTACAAAGAGCTTGATGATCATAGTAAAATTGTTGTTGTATAATTATTTATCTGC
71867924 AACTTACTAAGCTTTTATGCTTACTCCCTCTTTCCTTCCATTTTCTTTCAATGCTACCTAGCTA
66 AACTTACTAAGCTTTTATGCTTACTCCCTCTTTCCTTCCATTTTCTTTCAATGCTACCTAGCTA
*
71867988 GTTTATATTTGTACTAAGAGCTTGATGATCATAGTAAAATTGTTGTTGTATAATTATTTATCTGC
1 GTTTATATTTGTACAAAGAGCTTGATGATCATAGTAAAATTGTTGTTGTATAATTATTTATCTGC
71868053 AACTTACTAAGCTTTTATGCTTACTCCCTCTTTCCTTCCATTTTCTTTCAATGCTACCTAGCTA
66 AACTTACTAAGCTTTTATGCTTACTCCCTCTTTCCTTCCATTTTCTTTCAATGCTACCTAGCTA
71868117 G
1 G
71868118 CTAAAGGATC
Statistics
Matches: 129, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
129 129 1.00
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44
Consensus pattern (129 bp):
GTTTATATTTGTACAAAGAGCTTGATGATCATAGTAAAATTGTTGTTGTATAATTATTTATCTGC
AACTTACTAAGCTTTTATGCTTACTCCCTCTTTCCTTCCATTTTCTTTCAATGCTACCTAGCTA
Found at i:71874910 original size:30 final size:31
Alignment explanation
Indices: 71874876--71874940 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 31
71874866 AGAAAACCTT
* *
71874876 AATAATCTAGTGACTTAAA-AAAAACTTTTG
1 AATAATCTAATAACTTAAATAAAAACTTTTG
* *
71874906 AATAATTTAATAACTTAAATGAAAACTTTTG
1 AATAATCTAATAACTTAAATAAAAACTTTTG
71874937 AATA
1 AATA
71874941 TTTTAGTTAC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 16 0.53
31 14 0.47
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.35
Consensus pattern (31 bp):
AATAATCTAATAACTTAAATAAAAACTTTTG
Found at i:71874934 original size:31 final size:30
Alignment explanation
Indices: 71874888--71874945 Score: 89
Period size: 31 Copynumber: 1.9 Consensus size: 30
71874878 TAATCTAGTG
71874888 ACTTAAAAAAAACTTTTGAATAATTTAATA
1 ACTTAAAAAAAACTTTTGAATAATTTAATA
* *
71874918 ACTTAAATGAAAACTTTTGAATATTTTA
1 ACTTAAA-AAAAACTTTTGAATAATTTA
71874946 GTTACCAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 7 0.28
31 18 0.72
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.40
Consensus pattern (30 bp):
ACTTAAAAAAAACTTTTGAATAATTTAATA
Found at i:71876479 original size:23 final size:23
Alignment explanation
Indices: 71876464--71876521 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
71876454 TTAATGTTCA
71876464 CAAACATATTCATTTAATTTAAT
1 CAAACATATTCATTTAATTTAAT
* * *
71876487 CGAACATGTTCATTTAACTTAAT
1 CAAACATATTCATTTAATTTAAT
*
71876510 CGAACATATTCA
1 CAAACATATTCA
71876522 CGAATAATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.38
Consensus pattern (23 bp):
CAAACATATTCATTTAATTTAAT
Found at i:71901935 original size:21 final size:21
Alignment explanation
Indices: 71901911--71901973 Score: 54
Period size: 26 Copynumber: 2.7 Consensus size: 21
71901901 AAAACCTCGG
71901911 AGTTAGAAAGGAAAATAGAGC
1 AGTTAGAAAGGAAAATAGAGC
*
71901932 AGTTGGATTAGAAAGAAAAATAGAGC
1 A----G-TTAGAAAGGAAAATAGAGC
*
71901958 AGTTAGAGGAGGAAAA
1 AGTTAGA-AAGGAAAA
71901974 AGTATACTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 11
0.70 0.06 0.23
Matches are distributed among these distances:
21 6 0.18
22 7 0.21
25 1 0.03
26 19 0.58
ACGTcount: A:0.51, C:0.03, G:0.30, T:0.16
Consensus pattern (21 bp):
AGTTAGAAAGGAAAATAGAGC
Found at i:71903035 original size:21 final size:21
Alignment explanation
Indices: 71902999--71903043 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
71902989 GAGAGACCAA
* *
71902999 ATGCTGGAGTCCTAAAGA-AAC
1 ATGCTGGAATCATAAA-ACAAC
71903020 ATGCTGGAATCATAAAACAAC
1 ATGCTGGAATCATAAAACAAC
71903041 ATG
1 ATG
71903044 ATAAGCCAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.42, C:0.18, G:0.20, T:0.20
Consensus pattern (21 bp):
ATGCTGGAATCATAAAACAAC
Found at i:71908046 original size:25 final size:25
Alignment explanation
Indices: 71908018--71908068 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
71908008 ATTTCCTAGC
** *
71908018 CAATAGAGCTTTGGAGGATTATGAA
1 CAATAGAGCTTTAAAGGACTATGAA
71908043 CAATAGAGCTTTAAAGGACTATGAA
1 CAATAGAGCTTTAAAGGACTATGAA
71908068 C
1 C
71908069 CTTTGAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.25
Consensus pattern (25 bp):
CAATAGAGCTTTAAAGGACTATGAA
Found at i:71910802 original size:43 final size:44
Alignment explanation
Indices: 71910741--71910945 Score: 161
Period size: 43 Copynumber: 4.7 Consensus size: 44
71910731 TATCATAAGC
*
71910741 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AAATACCAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACAAGAT
* * * ***
71910784 CTTATATTCACTGAGCAGGAGTGAAGCA-GATCAAATTTTGGAGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAA--TACAAG-AT
* * * ** * * *
71910830 CTTATCTCCAC-GTA-CCGGCGATGGAGCAGATTCCAATCATAAG-C
1 CTTATCTTCACTG-AGCAGGAG-TGGAGCAGGCTCAAAT-ACAAGAT
*
71910874 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AAATACTAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACAAGAT
*
71910917 CTTATCTTCACTGAGCAGGAGTGAAGCAG
1 CTTATCTTCACTGAGCAGGAGTGGAGCAG
71910946 ATCGAATTTT
Statistics
Matches: 123, Mismatches: 28, Indels: 22
0.71 0.16 0.13
Matches are distributed among these distances:
42 5 0.04
43 60 0.49
44 20 0.16
45 14 0.11
46 20 0.16
47 4 0.03
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.25
Consensus pattern (44 bp):
CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACAAGAT
Found at i:71911114 original size:135 final size:134
Alignment explanation
Indices: 71910732--71911446 Score: 983
Period size: 135 Copynumber: 5.3 Consensus size: 134
71910722 GATTACAGAT
* *
71910732 ATCATAAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATA-CCAGATCTTATATTCACT
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATATCCAGATCTTATCTTCACT
71910796 GAGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGAT
66 GAGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGAT
*
71910861 TCCA
131 TCTA
* *
71910865 ATCATAAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATA-CTAGATCTTATCTTCACT
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATATCCAGATCTTATCTTCACT
* * *
71910929 GAGCAGGAGTGAAGCAGATCGAATTTTAGAGAATCTTATCTCTACGTACCGGCGATGGAGCAGAT
66 GAGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGAT
71910994 TCTA
131 TCTA
* * * * *
71910998 ATCATTAGCTTTATCTTCACTAAGCAGGAGTGGAACAGGCTAAATATTCCAGATCTTATCTTCAT
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATA-TCCAGATCTTATCTTCAC
** *
71911063 TGAGCAGGAGTGAAGCAGATTGAATTTTAGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGA
65 TGAGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGA
71911128 TT-TCA
130 TTCT-A
* * * *
71911133 ATCATCAGCTTTATCTTCATTGAGCAGGAGTGGAGCAGGCTAAATATACCAGGTCTTATCTTCGC
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATAT-CCAGATCTTATCTTCAC
* * * * * *
71911198 TGAGCAGGAG-CAGAGCAGATCAAATTTTGGTGAATCTTATCTCCATGTATCAGCAATGGAGCAG
65 TGAGCAGGAGTGA-AGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAG
71911262 A-TCTCA
129 ATTCT-A
** * * * *
71911268 GCCACCAACCTTATCTTCACTGAGCAGGAGTAGAGCAGGCTAAATATACCAGATCTTATCTTCAT
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATAT-CCAGATCTTATCTTCAC
*
71911333 TGAACAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGA
65 TGAGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGA
71911398 TTCTA
130 TTCTA
* * * * *
71911403 ATCATCAGCTTTATCTTTACTAAGCAGTAG-GGTAACAGGCTAAA
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGG-AGCAGGCTAAA
71911447 ATTTATAGAT
Statistics
Matches: 516, Mismatches: 57, Indels: 16
0.88 0.10 0.03
Matches are distributed among these distances:
133 169 0.33
134 5 0.01
135 338 0.66
136 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (134 bp):
ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATATCCAGATCTTATCTTCACT
GAGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGAT
TCTA
Found at i:71911327 original size:45 final size:45
Alignment explanation
Indices: 71911143--71911343 Score: 122
Period size: 45 Copynumber: 4.5 Consensus size: 45
71911133 ATCATCAGCT
* * *
71911143 TTATCTTCATTGAGCAGGAGTGGAGCAGGCTAAATATACCAGGTC
1 TTATCTTCACTGAGCAGGAGTAGAGCAGGCTAAATATACCAGATC
* * * * ****
71911188 TTATCTTCGCTGAGCAGGAGCAGAGCA-GATCAAATTTTGGTGAATC
1 TTATCTTCACTGAGCAGGAGTAGAGCAGGCT-AAATATACCAG-ATC
* * * * * * * *** *
71911234 TTATCTCCA-TGTATCAGCAATGGAGCAGATCT-CAGCCACCA-ACC
1 TTATCTTCACTG-AGCAGGAGTAGAGCAG-GCTAAATATACCAGATC
71911278 TTATCTTCACTGAGCAGGAGTAGAGCAGGCTAAATATACCAGATC
1 TTATCTTCACTGAGCAGGAGTAGAGCAGGCTAAATATACCAGATC
* *
71911323 TTATCTTCATTGAACAGGAGT
1 TTATCTTCACTGAGCAGGAGT
71911344 GAAGCAGATC
Statistics
Matches: 106, Mismatches: 42, Indels: 16
0.65 0.26 0.10
Matches are distributed among these distances:
43 2 0.02
44 29 0.27
45 54 0.51
46 20 0.19
48 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (45 bp):
TTATCTTCACTGAGCAGGAGTAGAGCAGGCTAAATATACCAGATC
Found at i:71920150 original size:59 final size:59
Alignment explanation
Indices: 71920058--71920175 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
71920048 ATTACCTTAA
71920058 GTTATATTATTTGCATGTTAATGTATGGAAAGGCTAGCTTATTTCTTTCATATTAGCTT
1 GTTATATTATTTGCATGTTAATGTATGGAAAGGCTAGCTTATTTCTTTCATATTAGCTT
*
71920117 GTTATATTATTTGCATGTTAATGTATGGTAAGGCTAGCTTATTTCTTTCATATTAGCTT
1 GTTATATTATTTGCATGTTAATGTATGGAAAGGCTAGCTTATTTCTTTCATATTAGCTT
71920176 ACTAAGCTAT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.25, C:0.10, G:0.17, T:0.48
Consensus pattern (59 bp):
GTTATATTATTTGCATGTTAATGTATGGAAAGGCTAGCTTATTTCTTTCATATTAGCTT
Found at i:71941054 original size:40 final size:40
Alignment explanation
Indices: 71940999--71941079 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
71940989 TATAGGAAAG
71940999 TAAACTAATTAAAGTTTTCATTTAAAGTAAAACTAACATC
1 TAAACTAATTAAAGTTTTCATTTAAAGTAAAACTAACATC
71941039 TAAACTAATTAAAGTTTTCATTTAAAGTAAAACTAACATC
1 TAAACTAATTAAAGTTTTCATTTAAAGTAAAACTAACATC
71941079 T
1 T
71941080 CTTTCATCTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.47, C:0.12, G:0.05, T:0.36
Consensus pattern (40 bp):
TAAACTAATTAAAGTTTTCATTTAAAGTAAAACTAACATC
Found at i:71941064 original size:22 final size:22
Alignment explanation
Indices: 71940999--71941064 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 22
71940989 TATAGGAAAG
71940999 TAAACTAATTAAAGTTTTCATT
1 TAAACTAATTAAAGTTTTCATT
* * ** *
71941021 TAAAGT-A--AAA-CTAACATC
1 TAAACTAATTAAAGTTTTCATT
71941039 TAAACTAATTAAAGTTTTCATT
1 TAAACTAATTAAAGTTTTCATT
71941061 TAAA
1 TAAA
71941065 GTAAAACTAA
Statistics
Matches: 30, Mismatches: 10, Indels: 8
0.62 0.21 0.17
Matches are distributed among these distances:
18 9 0.30
19 4 0.13
21 4 0.13
22 13 0.43
ACGTcount: A:0.47, C:0.11, G:0.05, T:0.38
Consensus pattern (22 bp):
TAAACTAATTAAAGTTTTCATT
Found at i:71944781 original size:16 final size:16
Alignment explanation
Indices: 71944734--71944782 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 16
71944724 TAAATTTTTA
71944734 AATATTTATAAAAGAAAT
1 AATATTT-TAAAA-AAAT
*
71944752 TATATTTT-AAAAAAT
1 AATATTTTAAAAAAAT
*
71944767 AATTTTTTAAAAAAAT
1 AATATTTTAAAAAAAT
71944783 CTAAAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 10 0.37
16 10 0.37
17 1 0.04
18 6 0.22
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (16 bp):
AATATTTTAAAAAAAT
Found at i:71945001 original size:15 final size:15
Alignment explanation
Indices: 71944983--71945039 Score: 71
Period size: 15 Copynumber: 3.7 Consensus size: 15
71944973 AATTTTTCTA
*
71944983 ATTTTACTCGATTCG
1 ATTTTACTTGATTCG
*
71944998 ATTTTAATTGACTT-G
1 ATTTTACTTGA-TTCG
71945013 AATTTTACTTGATTCG
1 -ATTTTACTTGATTCG
71945029 ATTTTACTTGA
1 ATTTTACTTGA
71945040 CTTGAATTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
15 23 0.64
16 13 0.36
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.51
Consensus pattern (15 bp):
ATTTTACTTGATTCG
Found at i:71945019 original size:16 final size:16
Alignment explanation
Indices: 71944998--71945048 Score: 70
Period size: 16 Copynumber: 3.2 Consensus size: 16
71944988 ACTCGATTCG
*
71944998 ATTTTAATTGACTTGA
1 ATTTTACTTGACTTGA
71945014 ATTTTACTTGA-TTCG-
1 ATTTTACTTGACTT-GA
71945029 ATTTTACTTGACTTGA
1 ATTTTACTTGACTTGA
71945045 ATTT
1 ATTT
71945049 CATTTAACTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
15 14 0.45
16 17 0.55
ACGTcount: A:0.25, C:0.10, G:0.12, T:0.53
Consensus pattern (16 bp):
ATTTTACTTGACTTGA
Found at i:71945019 original size:31 final size:31
Alignment explanation
Indices: 71944982--71945048 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
71944972 TAATTTTTCT
71944982 AATTTTACTCGATTCGATTTTAATTGACTTG
1 AATTTTACTCGATTCGATTTTAATTGACTTG
* *
71945013 AATTTTACTTGATTCGATTTTACTTGACTTG
1 AATTTTACTCGATTCGATTTTAATTGACTTG
71945044 AATTT
1 AATTT
71945049 CATTTAACTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.51
Consensus pattern (31 bp):
AATTTTACTCGATTCGATTTTAATTGACTTG
Found at i:71945500 original size:35 final size:36
Alignment explanation
Indices: 71945461--71945559 Score: 89
Period size: 35 Copynumber: 2.8 Consensus size: 36
71945451 AATAAAAATC
* *
71945461 AATAAAAT-TTGTAAAAATTATTAAATATTA-ATAAA
1 AATAAAATATT-TAAAAATTATTAAAAATTAGAAAAA
**
71945496 AATAAAATATTTAAATTTTATTAAAAATTAGAAAAA
1 AATAAAATATTTAAAAATTATTAAAAATTAGAAAAA
*
71945532 AATTATAAA-ATTATAAAAA-TATAAAAAA
1 AA-TA-AAATATT-TAAAAATTATTAAAAA
71945560 ATTGTAAAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
35 24 0.46
36 8 0.15
37 13 0.25
38 7 0.13
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (36 bp):
AATAAAATATTTAAAAATTATTAAAAATTAGAAAAA
Found at i:71945550 original size:29 final size:28
Alignment explanation
Indices: 71945517--71945599 Score: 96
Period size: 27 Copynumber: 2.9 Consensus size: 28
71945507 TAAATTTTAT
*
71945517 TAAAAATTAGAAAAAAATTATAAAATTA
1 TAAAAATTATAAAAAAATTATAAAATTA
*
71945545 TAAAAA-TATAAAAAAATTGTAAAATTTTA
1 TAAAAATTATAAAAAAATTATAAAA--TTA
* * *
71945574 TAAAAATCATTAAAAATTTATAAAAT
1 TAAAAATTATAAAAAAATTATAAAAT
71945600 GTATTAAGGT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
27 16 0.35
28 7 0.15
29 9 0.20
30 14 0.30
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (28 bp):
TAAAAATTATAAAAAAATTATAAAATTA
Found at i:71945578 original size:19 final size:19
Alignment explanation
Indices: 71945512--71945598 Score: 70
Period size: 19 Copynumber: 4.5 Consensus size: 19
71945502 ATATTTAAAT
*
71945512 TTTATTAAAAATTAGAAAAAA
1 TTTA-TAAAAATT-GTAAAAA
* *
71945533 ATTAT-AAAATTATAAAAA
1 TTTATAAAAATTGTAAAAA
* * *
71945551 TATAAAAAAATTGTAAAAT
1 TTTATAAAAATTGTAAAAA
71945570 TTTATAAAAATCAT-TAAAAA
1 TTTATAAAAAT--TGTAAAAA
71945590 TTTATAAAA
1 TTTATAAAA
71945599 TGTATTAAGG
Statistics
Matches: 52, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
18 7 0.13
19 26 0.50
20 15 0.29
21 4 0.08
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.34
Consensus pattern (19 bp):
TTTATAAAAATTGTAAAAA
Found at i:71945597 original size:10 final size:10
Alignment explanation
Indices: 71945528--71945598 Score: 51
Period size: 10 Copynumber: 7.4 Consensus size: 10
71945518 AAAAATTAGA
*
71945528 AAAAAATTAT
1 AAAAATTTAT
71945538 -AAAA-TTAT
1 AAAAATTTAT
*
71945546 AAAAATATA-
1 AAAAATTTAT
* *
71945555 AAAAAATTGT
1 AAAAATTTAT
*
71945565 AAAATTTTAT
1 AAAAATTTAT
*
71945575 AAAAA-TCATT
1 AAAAATTTA-T
71945585 AAAAATTTAT
1 AAAAATTTAT
71945595 AAAA
1 AAAA
71945599 TGTATTAAGG
Statistics
Matches: 46, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
8 4 0.09
9 16 0.35
10 24 0.52
11 2 0.04
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (10 bp):
AAAAATTTAT
Found at i:71945867 original size:15 final size:16
Alignment explanation
Indices: 71945815--71945873 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 16
71945805 CTTTACTTTT
71945815 TTTTATAATTTATTATGA
1 TTTTATAA-TT-TTATGA
**
71945833 TTTTATAAATTTTACAA
1 TTTTAT-AATTTTATGA
71945850 TTTTAT-ATTTTATGA
1 TTTTATAATTTTATGA
71945865 TTTTTATAA
1 -TTTTATAA
71945874 AAATTTATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
15 7 0.21
16 6 0.18
17 11 0.32
18 8 0.24
19 2 0.06
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (16 bp):
TTTTATAATTTTATGA
Found at i:71945896 original size:18 final size:19
Alignment explanation
Indices: 71945858--71945897 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
71945848 AATTTTATAT
*
71945858 TTTATGATTTTTATAAAAA
1 TTTATAATTTTTATAAAAA
*
71945877 TTTATAATTTTT-TAATAA
1 TTTATAATTTTTATAAAAA
71945895 TTT
1 TTT
71945898 TTTTATTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (19 bp):
TTTATAATTTTTATAAAAA
Found at i:71945929 original size:9 final size:8
Alignment explanation
Indices: 71945815--71945892 Score: 50
Period size: 8 Copynumber: 9.1 Consensus size: 8
71945805 CTTTACTTTT
71945815 TTTTATAA
1 TTTTATAA
*
71945823 TTTATTATGA
1 -TT-TTATAA
71945833 TTTTATAAA
1 TTTTAT-AA
*
71945842 TTTTACAA
1 TTTTATAA
71945850 TTTTAT-A
1 TTTTATAA
*
71945857 TTTTATGAT
1 TTTTAT-AA
71945866 TTTTATAAAA
1 TTTTAT--AA
*
71945876 ATTTATAA
1 TTTTATAA
*
71945884 TTTTTTAA
1 TTTTATAA
71945892 T
1 T
71945893 AATTTTTTTA
Statistics
Matches: 54, Mismatches: 10, Indels: 11
0.72 0.13 0.15
Matches are distributed among these distances:
7 7 0.13
8 20 0.37
9 16 0.30
10 11 0.20
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.60
Consensus pattern (8 bp):
TTTTATAA
Found at i:71945931 original size:32 final size:31
Alignment explanation
Indices: 71945865--71945932 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 31
71945855 TATTTTATGA
*
71945865 TTTTTATAAAAATTTATAATTTTTTAATAATT
1 TTTTTATAAAAATTTATAATTTTATAAT-ATT
* *
71945897 TTTTTATTAAAATTTAATAATTTTATAA-CTT
1 TTTTTATAAAAATTT-ATAATTTTATAATATT
71945928 TTTTT
1 TTTTT
71945933 GATTTATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 7 0.22
32 14 0.44
33 11 0.34
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (31 bp):
TTTTTATAAAAATTTATAATTTTATAATATT
Found at i:71951851 original size:26 final size:27
Alignment explanation
Indices: 71951820--71951873 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
71951810 AAATTTAAAA
*
71951820 ATAATTATAAT-ATTAAAAAAGTTTTT
1 ATAATTACAATCATTAAAAAAGTTTTT
*
71951846 ATAATTACAATCATTTAAAAAGTTTTT
1 ATAATTACAATCATTAAAAAAGTTTTT
71951873 A
1 A
71951874 AAACATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 10 0.40
27 15 0.60
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (27 bp):
ATAATTACAATCATTAAAAAAGTTTTT
Found at i:71952082 original size:13 final size:13
Alignment explanation
Indices: 71952064--71952088 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71952054 TCAAAATAAT
71952064 TAATATTTATTAA
1 TAATATTTATTAA
71952077 TAATATTTATTA
1 TAATATTTATTA
71952089 TTTATTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TAATATTTATTAA
Found at i:71952326 original size:89 final size:89
Alignment explanation
Indices: 71952195--71952366 Score: 283
Period size: 89 Copynumber: 1.9 Consensus size: 89
71952185 CCGAAGCAAT
*
71952195 TACAATTTCATTTCAATATCCAAAAGACAAATCATGCAAAAAA-AATGAGTTTTTAAAACTTCTA
1 TACAATTTCATTTCAATATCCAAAAGACAAATCATGCAAAAAATAATGAG-TTATAAAACTTCTA
71952259 ATAACATTAATTGTTCAAATCCGGG
65 ATAACATTAATTGTTCAAATCCGGG
* * **
71952284 TACAATTTCATTTCAATATTCAAAAGATAAATCATGCAAAAAATTTTGAGTTATAAAACTTCTAA
1 TACAATTTCATTTCAATATCCAAAAGACAAATCATGCAAAAAATAATGAGTTATAAAACTTCTAA
71952349 TAACATTAATTGTTCAAA
66 TAACATTAATTGTTCAAA
71952367 CCTGGGTTAT
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
89 73 0.95
90 4 0.05
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.34
Consensus pattern (89 bp):
TACAATTTCATTTCAATATCCAAAAGACAAATCATGCAAAAAATAATGAGTTATAAAACTTCTAA
TAACATTAATTGTTCAAATCCGGG
Found at i:71953257 original size:19 final size:21
Alignment explanation
Indices: 71953233--71953272 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 21
71953223 TTTATCATGC
71953233 CATATACCA-ACATTT-AATT
1 CATATACCATACATTTCAATT
71953252 CATATACCATACATTTCAATT
1 CATATACCATACATTTCAATT
71953273 ACATGGATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.47
20 6 0.32
21 4 0.21
ACGTcount: A:0.40, C:0.23, G:0.00, T:0.38
Consensus pattern (21 bp):
CATATACCATACATTTCAATT
Found at i:71958101 original size:38 final size:38
Alignment explanation
Indices: 71958040--71958152 Score: 154
Period size: 38 Copynumber: 2.9 Consensus size: 38
71958030 ATTTGATGTG
*
71958040 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAAAA
**
71958080 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
* * *
71958118 TATCCGGGATAAATCCCGCAGGCCTAGTGCTGGTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
71958153 TTATATTCGG
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
38 54 0.81
39 5 0.07
40 8 0.12
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
Found at i:71958153 original size:38 final size:38
Alignment explanation
Indices: 71958056--71958163 Score: 162
Period size: 38 Copynumber: 2.8 Consensus size: 38
71958046 GGCTTAAAGA
** *
71958056 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
71958094 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
* * *
71958132 CCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGG
71958164 CCTTCGTGCC
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
Found at i:71958280 original size:43 final size:43
Alignment explanation
Indices: 71958156--71958267 Score: 224
Period size: 43 Copynumber: 2.6 Consensus size: 43
71958146 GCTGGTATTA
71958156 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
71958199 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
71958242 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
71958268 GTAATGCCGG
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.10, C:0.27, G:0.34, T:0.29
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:71959894 original size:48 final size:48
Alignment explanation
Indices: 71959800--71959903 Score: 122
Period size: 48 Copynumber: 2.2 Consensus size: 48
71959790 TGTGCTAAGC
* * *
71959800 GTAAGACCTATCTGGGATAGGCATCGGCACAGCCCAGTGAGTGCTAGT
1 GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
**
71959848 GTAAGACCTATC-GGGAATAGGCATCAGCAC-GGGCAGAGCAGAGCTAGT
1 GTAAGACCTATCTGGG-ATAGGCATCAGCACAGCCCAGAG-AGAGCTAGT
*
71959896 ATAAGACC
1 GTAAGACC
71959904 ATAGTTGGAC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
47 8 0.17
48 40 0.83
ACGTcount: A:0.30, C:0.22, G:0.31, T:0.17
Consensus pattern (48 bp):
GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
Found at i:71963132 original size:38 final size:38
Alignment explanation
Indices: 71963071--71963183 Score: 127
Period size: 38 Copynumber: 2.9 Consensus size: 38
71963061 ATTTGATGTG
*
71963071 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAAAA
* **
71963111 TATCCGGGTTAAATCCCGCAGGTTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
* * * * *
71963149 TATCAGGGATAAATCTCGCAGGCCTAGTGCTGGTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
71963184 TTATATTCGG
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
38 50 0.79
39 5 0.08
40 8 0.13
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
Found at i:71963184 original size:38 final size:38
Alignment explanation
Indices: 71963087--71963189 Score: 134
Period size: 38 Copynumber: 2.7 Consensus size: 38
71963077 GGCTTAAAGA
** * *
71963087 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCAGGGATAAAT
*
71963125 CCCGCAGGTTTCGTGCTGGTATTATATCAGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCAGGGATAAAT
* * *
71963163 CTCGCAGGCCTAGTGCTGGTATTATAT
1 CCCGCAGGCTTCGTGCTGGTATTATAT
71963190 TCGGGCCTTC
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 56 1.00
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCAGGGATAAAT
Found at i:71963264 original size:43 final size:43
Alignment explanation
Indices: 71963187--71963268 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
71963177 GCTGGTATTA
* **
71963187 TATTCGGGCCTTCATGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCATGCCTAGCAGGCGTAATGCCGGTGATGTG
*
71963230 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCATGCCTAGCAGGCGTAATGCCGGTGA
71963269 AATGATATGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.13, C:0.26, G:0.33, T:0.28
Consensus pattern (43 bp):
TATTCGGGCCTTCATGCCTAGCAGGCGTAATGCCGGTGATGTG
Found at i:71972985 original size:21 final size:21
Alignment explanation
Indices: 71972934--71972993 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
71972924 TAAGTTGATA
*
71972934 TTAAAAAA-AG-TTTTTATTTT
1 TTAAAAAATAGATTTTT-TTTG
71972954 TTAAAATAATAGATTTTTTTTG
1 TTAAAA-AATAGATTTTTTTTG
*
71972976 TTAAAAAATAGAATTTTT
1 TTAAAAAATAGATTTTTT
71972994 ATTCATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 6 0.17
21 13 0.37
22 11 0.31
23 5 0.14
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.52
Consensus pattern (21 bp):
TTAAAAAATAGATTTTTTTTG
Found at i:71973295 original size:18 final size:18
Alignment explanation
Indices: 71973272--71973308 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
71973262 TTTATATGAC
71973272 AACTTCAAAAAACATCAT
1 AACTTCAAAAAACATCAT
71973290 AACTTCAAAAAACATCAT
1 AACTTCAAAAAACATCAT
71973308 A
1 A
71973309 GGTTAACGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.57, C:0.22, G:0.00, T:0.22
Consensus pattern (18 bp):
AACTTCAAAAAACATCAT
Found at i:71981955 original size:46 final size:47
Alignment explanation
Indices: 71981851--71982117 Score: 201
Period size: 46 Copynumber: 5.6 Consensus size: 47
71981841 GGTTATTTGT
* * * *
71981851 GAGCCAGTGTAAGACCAGGTCTGGGACATGGCATCGGCATTGAGACG-A
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTA
* *
71981899 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA
*
71981946 -AGCCAGTGTAAGACATGTTTGGGACATGCATCGG-CTACGAGATGT-
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTA
* * * *
71981991 --GTCAGTGTAAGAACCTGGT-TGGGACATGGCATCGGCAC-GGATATGTGA
1 GAGCCAGTGTAAG-ACAT-GTCTGGGACAT-GCATCGGC-CTCGAGATGT-A
* * * **
71982039 GAGCTAGTGTAAGACCATGTCTGGGACATGGAGTTGGCCTCGATTTCG-A
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGCA-TCGGCCTCGAGAT-GTA
* *
71982088 TAGTCAGTGTAAGACGATGTCTGGGACATG
1 GAGCCAGTGTAAGAC-ATGTCTGGGACATG
71982118 GCATTGACTT
Statistics
Matches: 179, Mismatches: 23, Indels: 33
0.76 0.10 0.14
Matches are distributed among these distances:
44 10 0.06
45 13 0.07
46 67 0.37
47 14 0.08
48 15 0.08
49 32 0.18
50 27 0.15
51 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.33, T:0.23
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA
Found at i:71987783 original size:39 final size:38
Alignment explanation
Indices: 71987642--71987997 Score: 214
Period size: 39 Copynumber: 9.1 Consensus size: 38
71987632 AATAATTTTT
* * *
71987642 GACTTTTTTATGGTCCGCTGATTTACGATCATGACC-TC
1 GACTTTCTTATGGT-CACTGATTTACGATCACGACCTTC
* * * * **
71987680 CAGTTTTCTTA-GGTTCCACTTATTTATGATCACGGGCTTC
1 GA-CTTTCTTATGG-T-CACTGATTTACGATCACGACCTTC
* * * *
71987720 GATTTTTTTACGGTCCACTGATTTATGATCACGACCTTC
1 GACTTTCTTATGGT-CACTGATTTACGATCACGACCTTC
* * * * * *
71987759 AACTTTCTTATAGTCTGCTAATTTACGATCGCAACCTTC
1 GACTTTCTTATGGTC-ACTGATTTACGATCACGACCTTC
* * *
71987798 GACTTTCTTATGGTACACTGATTTAAGATCATGACCTTT
1 GACTTTCTTATGGT-CACTGATTTACGATCACGACCTTC
* *
71987837 GACTTTCTTATGGTCCACTGATTTACGATCACGACTTTT
1 GACTTTCTTATGGT-CACTGATTTACGATCACGACCTTC
* * * ** *
71987876 GACTTTCTTATGGTTCGCTGATTTACAACCATAACTTTC
1 GACTTTCTTATGG-TCACTGATTTACGATCACGACCTTC
* * * * *
71987915 GGCTTTCTTACGATTCATTGATTTAC-AGTTACGACCTTC
1 GACTTTCTTATG-GTCACTGATTTACGA-TCACGACCTTC
* * * **
71987954 GACTTTCTTACAGTTCACTAATTTATAATCACGACCTTC
1 GACTTTCTTA-TGGTCACTGATTTACGATCACGACCTTC
*
71987993 TACTT
1 GACTT
71987998 ACAAGATTTT
Statistics
Matches: 247, Mismatches: 60, Indels: 21
0.75 0.18 0.06
Matches are distributed among these distances:
38 5 0.02
39 233 0.94
40 9 0.04
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (38 bp):
GACTTTCTTATGGTCACTGATTTACGATCACGACCTTC
Found at i:71987900 original size:117 final size:117
Alignment explanation
Indices: 71987638--71987988 Score: 289
Period size: 117 Copynumber: 3.0 Consensus size: 117
71987628 TGATAATAAT
* * ** * * *
71987638 TTTTGACTTTTTTATGGTCCGCTGATTTACGATCATGACCTCCAGTTTTCTTAGGTTCCACTTAT
1 TTTTGACTTTCTTATGGTTCGCTGATTTACGATCACAACCTCCAGCTTTCTTAGGTTACACTGAT
* ** * * *
71987703 TTATGATCACGGGCTTCGATTTTTTTACGGTCCACTGATTTATGATCACGAC
66 TTAAGATCACGACCTTCGACTTTCTTACGGTCCACTGATTTACGATCACGAC
* ** * * * *
71987755 CTTCAACTTTCTTATAG-TCTGCTAATTTACGATCGCAACCTTC-GACTTTCTTATGG-TACACT
1 TTTTGACTTTCTTATGGTTC-GCTGATTTACGATCACAACCTCCAG-CTTTCTTA-GGTTACACT
* * *
71987817 GATTTAAGATCATGACCTTTGACTTTCTTATGGTCCACTGATTTACGATCACGAC
63 GATTTAAGATCACGACCTTCGACTTTCTTACGGTCCACTGATTTACGATCACGAC
* * * * * * * *
71987872 TTTTGACTTTCTTATGGTTCGCTGATTTACAACCATAACTTTCGGCTTTCTTACGATT-CATTGA
1 TTTTGACTTTCTTATGGTTCGCTGATTTACGATCACAACCTCCAGCTTTCTTA-GGTTACACTGA
* * * * **
71987936 TTTACAG-TTACGACCTTCGACTTTCTTACAGTTCACTAATTTATAATCACGAC
65 TTTA-AGATCACGACCTTCGACTTTCTTACGGTCCACTGATTTACGATCACGAC
71987989 CTTCTACTTA
Statistics
Matches: 182, Mismatches: 45, Indels: 14
0.76 0.19 0.06
Matches are distributed among these distances:
116 2 0.01
117 172 0.95
118 8 0.04
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (117 bp):
TTTTGACTTTCTTATGGTTCGCTGATTTACGATCACAACCTCCAGCTTTCTTAGGTTACACTGAT
TTAAGATCACGACCTTCGACTTTCTTACGGTCCACTGATTTACGATCACGAC
Found at i:71988045 original size:54 final size:54
Alignment explanation
Indices: 71987981--71988207 Score: 285
Period size: 54 Copynumber: 4.2 Consensus size: 54
71987971 CTAATTTATA
* *
71987981 ATCACGACCTTCTACTTACAAGATTTTACGAATCTCGCT-GTCCACTGATTTACG
1 ATCACGACCTTTTACTTACAAGATTTTACGAATCTCG-TGGTCTACTGATTTACG
* * * ** * *
71988035 ATCACAACCTTTTACTTACAAGATTTTACGAATCTCGCGGTTTGTTGATTCATG
1 ATCACGACCTTTTACTTACAAGATTTTACGAATCTCGTGGTCTACTGATTTACG
* ** * *
71988089 ATCATGACCTTTTACTTACGGGATTTTACTAATCTCGTGGTCTACTGATTTATG
1 ATCACGACCTTTTACTTACAAGATTTTACGAATCTCGTGGTCTACTGATTTACG
* *
71988143 ATCACGACCTTTTACTTACGAGATTCTACGAATCTCGTGGTCTACTGATTTACG
1 ATCACGACCTTTTACTTACAAGATTTTACGAATCTCGTGGTCTACTGATTTACG
*
71988197 ACCACGACCTT
1 ATCACGACCTT
71988208 CGGCTTTCTT
Statistics
Matches: 147, Mismatches: 25, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
54 147 1.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.37
Consensus pattern (54 bp):
ATCACGACCTTTTACTTACAAGATTTTACGAATCTCGTGGTCTACTGATTTACG
Found at i:71988541 original size:39 final size:39
Alignment explanation
Indices: 71988182--71988662 Score: 328
Period size: 39 Copynumber: 12.4 Consensus size: 39
71988172 GAATCTCGTG
* * *
71988182 GTCTACTGATTTACGACCACGACCTTCGGCTTTCTTATTA
1 GTCTGCTGATTTACGATCACGACCTTTGGCTTTCTTA-TA
* * * * * *
71988222 -CCCGTTGATTTACGATCACAAACTTTGACTTTCTTATA
1 GTCTGCTGATTTACGATCACGACCTTTGGCTTTCTTATA
* * * *
71988260 GTCTGTTGATTTACGGTCAC-AGTCATTGGCTTTCTTATA
1 GTCTGCTGATTTACGATCACGA-CCTTTGGCTTTCTTATA
* *
71988299 GTCCGCT-AGTTTACGATCACGACCTTTGGCTTCCTTATA
1 GTCTGCTGA-TTTACGATCACGACCTTTGGCTTTCTTATA
* * * * *
71988338 GTCTG-TGATTTACAATCATGACTTTTGACTTTCTTACA
1 GTCTGCTGATTTACGATCACGACCTTTGGCTTTCTTATA
* * * * * * * **
71988376 ATTTGCTGATTTACTATCATGACCTTCGACTTACTTAGG
1 GTCTGCTGATTTACGATCACGACCTTTGGCTTTCTTATA
* * * *
71988415 GTCTGCTGATTTACGATCATGACCTTCGACTTTCTTAAA
1 GTCTGCTGATTTACGATCACGACCTTTGGCTTTCTTATA
* * *
71988454 GTTTGCTGATTTACGATCACGACCTTCGGCTTTCTCAT-
1 GTCTGCTGATTTACGATCACGACCTTTGGCTTTCTTATA
* * * * *
71988492 GAC-CCATTGATTTACGATCACAAACTTTGGCTTTCTTATG
1 GTCTGC--TGATTTACGATCACGACCTTTGGCTTTCTTATA
* * * * * * *
71988532 GTTTGTTGATTTACGGTCAC-ATTCATCGGCTTTCTTATG
1 GTCTGCTGATTTACGATCACGA-CCTTTGGCTTTCTTATA
* * * *
71988571 GTTTGCTGGTTTACGATCACGACCTTTAGCTTTCTTACA
1 GTCTGCTGATTTACGATCACGACCTTTGGCTTTCTTATA
* * * * **
71988610 GTCTACTGATTTATGATCACGACCTTCGACTTTCTTACG
1 GTCTGCTGATTTACGATCACGACCTTTGGCTTTCTTATA
*
71988649 GTTTGCTGATTTAC
1 GTCTGCTGATTTAC
71988663 AGCCACAACC
Statistics
Matches: 347, Mismatches: 82, Indels: 25
0.76 0.18 0.06
Matches are distributed among these distances:
37 1 0.00
38 34 0.10
39 309 0.89
40 3 0.01
ACGTcount: A:0.20, C:0.23, G:0.16, T:0.41
Consensus pattern (39 bp):
GTCTGCTGATTTACGATCACGACCTTTGGCTTTCTTATA
Found at i:71988735 original size:54 final size:54
Alignment explanation
Indices: 71988670--71988835 Score: 228
Period size: 54 Copynumber: 3.1 Consensus size: 54
71988660 TACAGCCACA
* * *
71988670 ACCTTCTACTTACAAGATTTTATGAATCTCGCAGTCCGCTGATTTATGATCACG
1 ACCTTTTACTTACAGGATTTTAAGAATCTCGCAGTCCGCTGATTTATGATCACG
* *
71988724 ACCTTTTACTTACGGGATTTTAAGAATCTCGCAGTCCACTGATTTATGATCACG
1 ACCTTTTACTTACAGGATTTTAAGAATCTCGCAGTCCGCTGATTTATGATCACG
* * * *
71988778 ACCTTTTACTTACAGGATTTTACA-AATCTCACAGTCTGCTGA-TTACGATCACA
1 ACCTTTTACTTACAGGATTTTA-AGAATCTCGCAGTCCGCTGATTTATGATCACG
71988831 ACCTT
1 ACCTT
71988836 CTACAGTCTT
Statistics
Matches: 100, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
53 14 0.14
54 85 0.85
55 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (54 bp):
ACCTTTTACTTACAGGATTTTAAGAATCTCGCAGTCCGCTGATTTATGATCACG
Found at i:71988920 original size:24 final size:24
Alignment explanation
Indices: 71988893--71988947 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
71988883 ATTTTGTGAC
71988893 ATTTCTATAAATACAGTTCACAAT
1 ATTTCTATAAATACAGTTCACAAT
* * * *
71988917 ATTTTTGTAAATGCAGTTCACAGT
1 ATTTCTATAAATACAGTTCACAAT
*
71988941 AATTCTA
1 ATTTCTA
71988948 CAATACATTT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (24 bp):
ATTTCTATAAATACAGTTCACAAT
Found at i:71989069 original size:14 final size:15
Alignment explanation
Indices: 71989050--71989083 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
71989040 CAACATGGTT
71989050 CATTTCCTTAA-AAC
1 CATTTCCTTAATAAC
*
71989064 CATTTCTTTAATAAC
1 CATTTCCTTAATAAC
71989079 CATTT
1 CATTT
71989084 AACTTCTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.44
Consensus pattern (15 bp):
CATTTCCTTAATAAC
Found at i:71990217 original size:14 final size:14
Alignment explanation
Indices: 71990188--71990228 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
71990178 ATAAAAATTC
*
71990188 AAAATA-ATTTTCA
1 AAAATATATTTTTA
71990201 AAAATATATTTTTA
1 AAAATATATTTTTA
71990215 AAAATATAATTTTT
1 AAAATAT-ATTTTT
71990229 TTTTAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 6 0.24
14 13 0.52
15 6 0.24
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (14 bp):
AAAATATATTTTTA
Found at i:72001966 original size:47 final size:45
Alignment explanation
Indices: 72001817--72001990 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 45
72001807 ATCTCATAGT
* * *
72001817 CGATGCATG-TCCTAGACGTGTCTTACACTGGCTTACGTCTCGA-GGC
1 CGATGCATGTTCC-AGACATGTCTTACACTGGC-T-CGTATCAATGGC
*
72001863 CGATGCATGTTCCAGACATGTCTTACACTAGCGCTCGTCTCAAT-GC
1 CGATGCATGTTCCAGACATGTCTTACACT-G-GCTCGTATCAATGGC
72001909 CGATGCCATGTTCCAGACATGGTCTTACACTGGCTC-TAAT-AATGTGGC
1 CGATG-CATGTTCCAGACAT-GTCTTACACTGGCTCGT-ATCAA--TGGC
* * *
72001957 CAATGCATGTCCCAGACATGTCTTACACTAGCTC
1 CGATGCATGTTCCAGACATGTCTTACACTGGCTC
72001991 ACACAAGTGA
Statistics
Matches: 112, Mismatches: 6, Indels: 20
0.81 0.04 0.14
Matches are distributed among these distances:
45 3 0.03
46 57 0.51
47 34 0.30
48 18 0.16
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (45 bp):
CGATGCATGTTCCAGACATGTCTTACACTGGCTCGTATCAATGGC
Found at i:72006711 original size:109 final size:109
Alignment explanation
Indices: 72006572--72006890 Score: 510
Period size: 101 Copynumber: 3.0 Consensus size: 109
72006562 GGAATTAACG
72006572 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
1 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
72006637 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
66 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
* *
72006681 GCCGACCAATATGCATGGATTAATGGCTTGAATTATTTATTATGTTTTATGGCATTATGATATAC
1 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
72006746 -TTAATATATG-T--TA-A-TATA-TT-ATAAAAGATGAAAGTA
66 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
* *
72006782 GCCGACCAATATGCATGGATTAATGACTTGAATTGTTTATTATATTTTATGGCATTATGGTATAC
1 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
* * * *
72006847 TTTAATATATGTTAATATATTATGTTTAAGAAGAGAGGAAAGTA
66 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
72006891 TTCATCTTTC
Statistics
Matches: 192, Mismatches: 10, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
101 77 0.40
102 12 0.06
103 5 0.03
104 1 0.01
105 4 0.02
106 1 0.01
107 4 0.02
108 12 0.06
109 76 0.40
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (109 bp):
GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
Found at i:72010559 original size:109 final size:109
Alignment explanation
Indices: 72010424--72010742 Score: 528
Period size: 101 Copynumber: 3.0 Consensus size: 109
72010414 GGAATTAACG
72010424 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
1 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
72010489 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
66 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
72010533 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
1 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
72010598 -TTAATATATG-T--TA-A-TATA-TT-ATAAAAGATGAAAGTA
66 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
* *
72010634 GCCGACCAATATGCATGGATTAATGACTTGAATTGTTTATTATATTTTATGGCATTATGGTATAC
1 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
* * * *
72010699 TTTAATATATGTTAATATATTATGTTTAAGAAGAGAGGAAAGTA
66 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
72010743 TTCATCTTTC
Statistics
Matches: 196, Mismatches: 6, Indels: 16
0.90 0.03 0.07
Matches are distributed among these distances:
101 79 0.40
102 12 0.06
103 5 0.03
104 1 0.01
105 4 0.02
106 1 0.01
107 4 0.02
108 12 0.06
109 78 0.40
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (109 bp):
GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
Found at i:72011153 original size:28 final size:28
Alignment explanation
Indices: 72011109--72011178 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
72011099 TATGAGATTG
*
72011109 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
* *
72011137 GCACTAAGTGTGTGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
72011165 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72011179 GACTTACTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 35 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:72015085 original size:23 final size:23
Alignment explanation
Indices: 72015059--72015105 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
72015049 TTGTGAAAAA
72015059 GAAAGACAACTCTTTGAAATTAT
1 GAAAGACAACTCTTTGAAATTAT
72015082 GAAAGACAACTCTTTGAAATTAT
1 GAAAGACAACTCTTTGAAATTAT
72015105 G
1 G
72015106 TATAGATTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.30
Consensus pattern (23 bp):
GAAAGACAACTCTTTGAAATTAT
Found at i:72016865 original size:12 final size:12
Alignment explanation
Indices: 72016847--72016891 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
72016837 AGATCGAGAT
72016847 TCAAGATTTACA
1 TCAAGATTTACA
** *
72016859 TTGAGATTTAGA
1 TCAAGATTTACA
72016871 TCAAGATTTACA
1 TCAAGATTTACA
72016883 TCAAGATTT
1 TCAAGATTT
72016892 TGGAGCAAAC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (12 bp):
TCAAGATTTACA
Found at i:72028602 original size:20 final size:21
Alignment explanation
Indices: 72028579--72028622 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
72028569 ATTTTATGTT
*
72028579 ATTTTTCT-TACT-TAATTTTG
1 ATTTTT-TATACTATAATTTCG
72028599 ATTTTTTATACTATAATTTCG
1 ATTTTTTATACTATAATTTCG
72028620 ATT
1 ATT
72028623 ATTATTGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 10 0.48
21 10 0.48
ACGTcount: A:0.25, C:0.09, G:0.05, T:0.61
Consensus pattern (21 bp):
ATTTTTTATACTATAATTTCG
Found at i:72035208 original size:38 final size:38
Alignment explanation
Indices: 72035166--72035249 Score: 98
Period size: 39 Copynumber: 2.2 Consensus size: 38
72035156 GCACCTAACA
* *
72035166 CTCATCGGTATAA-CCAAAGTAAAATTGGCACCCAGTGC
1 CTCATCGG-ACAAGCCAAAGTAAAATTGGCACCCAGTAC
* * *
72035204 CTCATCGGACAATGCCGAAGTAAATTTGGCACTCAGTAC
1 CTCATCGGACAA-GCCAAAGTAAAATTGGCACCCAGTAC
72035243 CTCATCG
1 CTCATCG
72035250 ACTCGTAGTC
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
37 3 0.08
38 8 0.21
39 28 0.72
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (38 bp):
CTCATCGGACAAGCCAAAGTAAAATTGGCACCCAGTAC
Found at i:72036256 original size:30 final size:30
Alignment explanation
Indices: 72036222--72036287 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
72036212 CTTTATTTTA
*
72036222 TTTATTAAATTTTATCACCTTAATTTATGC
1 TTTATTAAATTTTATCACCTTAAATTATGC
*
72036252 TTTATTAATTTTTATCACCTTAAATTATGC
1 TTTATTAAATTTTATCACCTTAAATTATGC
72036282 TTTATT
1 TTTATT
72036288 TTATTTATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.29, C:0.12, G:0.03, T:0.56
Consensus pattern (30 bp):
TTTATTAAATTTTATCACCTTAAATTATGC
Found at i:72039834 original size:13 final size:13
Alignment explanation
Indices: 72039816--72039841 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72039806 GCAATTTGGA
72039816 ATTGATGATGCTT
1 ATTGATGATGCTT
72039829 ATTGATGATGCTT
1 ATTGATGATGCTT
72039842 TGGTGAACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (13 bp):
ATTGATGATGCTT
Found at i:72061935 original size:13 final size:13
Alignment explanation
Indices: 72061917--72061942 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72061907 AAAACCTTAG
72061917 TGTTTGAATTAAA
1 TGTTTGAATTAAA
72061930 TGTTTGAATTAAA
1 TGTTTGAATTAAA
72061943 CTTTTAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (13 bp):
TGTTTGAATTAAA
Found at i:72063700 original size:49 final size:50
Alignment explanation
Indices: 72063551--72063735 Score: 250
Period size: 49 Copynumber: 3.8 Consensus size: 50
72063541 GATACCAACA
* * * * *
72063551 CCATATCCCAGATATGGTCTTACATGGGATCAC-CA-CTCAATGCTAATG
1 CCATGTCCCAGACATGGTCTTACATGGGATCTCATATCTCGATGCTAATG
* * *
72063599 CCATGTCCTAGACATGGTCTTACATGGGATCTCATATGTCGATGCCAATG
1 CCATGTCCCAGACATGGTCTTACATGGGATCTCATATCTCGATGCTAATG
* *
72063649 CCATGTCCCAGAAATGGTCTTACATGGG-TCTCATATTTCGATGCTAATG
1 CCATGTCCCAGACATGGTCTTACATGGGATCTCATATCTCGATGCTAATG
*
72063698 CCATGTCCCAGACATGGCCTTACATGGGATCTCATATC
1 CCATGTCCCAGACATGGTCTTACATGGGATCTCATATC
72063736 AACGCCATAT
Statistics
Matches: 119, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
48 29 0.24
49 46 0.39
50 44 0.37
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.29
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACATGGGATCTCATATCTCGATGCTAATG
Found at i:72063726 original size:99 final size:98
Alignment explanation
Indices: 72063551--72063734 Score: 271
Period size: 99 Copynumber: 1.9 Consensus size: 98
72063541 GATACCAACA
* *
72063551 CCATATCCCAGATATGGTCTTACATGGGATCACCACTCAATGCTAATGCCATGTCCTAGACATGG
1 CCATATCCCAGAAATGGTCTTACATGGGATCACCACTCAATGCTAATGCCATGTCCCAGACATGG
*
72063616 TCTTACATGGGATCTCATATGTCGATGCCAATG
66 CCTTACATGGGATCTCATATGTCGATGCCAATG
* * * * *
72063649 CCATGTCCCAGAAATGGTCTTACATGGG-TCTCATATTTCGATGCTAATGCCATGTCCCAGACAT
1 CCATATCCCAGAAATGGTCTTACATGGGATCAC-CA-CTCAATGCTAATGCCATGTCCCAGACAT
72063713 GGCCTTACATGGGATCTCATAT
64 GGCCTTACATGGGATCTCATAT
72063735 CAACGCCATA
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
97 3 0.04
98 27 0.36
99 46 0.61
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (98 bp):
CCATATCCCAGAAATGGTCTTACATGGGATCACCACTCAATGCTAATGCCATGTCCCAGACATGG
CCTTACATGGGATCTCATATGTCGATGCCAATG
Found at i:72064537 original size:10 final size:9
Alignment explanation
Indices: 72064513--72064543 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
72064503 TTCAAGGATC
72064513 TCAAAAACA
1 TCAAAAACA
72064522 TCAAAAACA
1 TCAAAAACA
72064531 TCAAAAACTA
1 TCAAAAAC-A
72064541 TCA
1 TCA
72064544 CCAAAATGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 17 0.81
10 4 0.19
ACGTcount: A:0.61, C:0.23, G:0.00, T:0.16
Consensus pattern (9 bp):
TCAAAAACA
Found at i:72068026 original size:31 final size:31
Alignment explanation
Indices: 72067983--72068062 Score: 135
Period size: 31 Copynumber: 2.6 Consensus size: 31
72067973 TTTAACGATT
* *
72067983 ACTGAGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTACATAAATCATATC
72068014 ACTGGGCCGAAGCCTTTACATAAATCATATC
1 ACTGGGCCGAAGCCTTTACATAAATCATATC
72068045 ACT-GGCCGAAGCCTTTAC
1 ACTGGGCCGAAGCCTTTAC
72068063 TGTAAGCGGT
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 15 0.32
31 32 0.68
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTACATAAATCATATC
Found at i:72068309 original size:25 final size:25
Alignment explanation
Indices: 72068281--72068350 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
72068271 CTCTTTTAAT
*
72068281 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
72068306 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
72068331 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
72068351 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:72069189 original size:27 final size:27
Alignment explanation
Indices: 72069159--72069223 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
72069149 GGGCGTATTC
72069159 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
72069186 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
72069213 GTCTTTTTACC
1 GTCATTTTACC
72069224 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:72069307 original size:27 final size:27
Alignment explanation
Indices: 72069281--72069410 Score: 102
Period size: 27 Copynumber: 4.7 Consensus size: 27
72069271 ATCTACAAAC
*
72069281 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
72069308 CAATGGTATTTCTA-TAATTTT-TAGAAAGT
1 CAAGGGTATTTC-AGTAATTTTGT--AAA-T
**
72069337 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* * ** **
72069364 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *
72069391 TAAGGGTATTTCGGTAATTT
1 CAAGGGTATTTCAGTAATTT
72069411 CACAAACCAG
Statistics
Matches: 85, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.01
27 59 0.69
28 7 0.08
29 17 0.20
30 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:72069415 original size:27 final size:27
Alignment explanation
Indices: 72069338--72069463 Score: 146
Period size: 27 Copynumber: 4.7 Consensus size: 27
72069328 TTAGAAAGTC
* **
72069338 AAGGGTATTTTTGTAATTTTGTAAATT
1 AAGGGTATTTTGGTAATTTTACAAATT
*
72069365 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTACAAATT
* * *
72069392 AAGGGTATTTCGGTAATTTCACAAA-C
1 AAGGGTATTTTGGTAATTTTACAAATT
* *
72069418 CAGTGGTATTTTGGTAATTTTACAAACT
1 AAG-GGTATTTTGGTAATTTTACAAATT
*
72069446 AGGGGTATTTTGGTAATT
1 AAGGGTATTTTGGTAATT
72069464 CTATCCTATA
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 2 0.02
27 80 0.96
28 1 0.01
ACGTcount: A:0.29, C:0.06, G:0.21, T:0.43
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAATT
Found at i:72069436 original size:110 final size:108
Alignment explanation
Indices: 72069257--72069463 Score: 245
Period size: 110 Copynumber: 1.9 Consensus size: 108
72069247 CATCCTACAA
* ***
72069257 GGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTA
1 GGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAATGGTATTTCTA
* * *
72069322 TAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTGTAAATTAG
66 TAA-TTTTACAAACT-AAGGGTATTTTGGTAATTTTGTAAATTAG
* * ** * *
72069367 GGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTT-TG
1 GGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAATGGTATTTCT-
* *
72069431 GTAATTTTACAAACTAGGGGTATTTTGGTAATT
65 ATAATTTTACAAACTAAGGGTATTTTGGTAATT
72069464 CTATCCTATA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
108 16 0.20
109 10 0.12
110 55 0.68
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.41
Consensus pattern (108 bp):
GGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAATGGTATTTCTA
TAATTTTACAAACTAAGGGTATTTTGGTAATTTTGTAAATTAG
Found at i:72069457 original size:81 final size:81
Alignment explanation
Indices: 72069341--72069496 Score: 215
Period size: 81 Copynumber: 1.9 Consensus size: 81
72069331 GAAAGTCAAG
* ** * * *
72069341 GGTATTTTTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTA-CAAATTAAGGGTATTTCGG
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCAAA-TAAGGGTATTTCAG
72069405 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
** *
72069422 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCCTATAGGGGTATTTCAGT
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCAAATAAGGGTATTTCAGT
72069487 AATTTCACAA
66 AATTTCACAA
72069497 TCGAGGGTAA
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
81 63 0.97
82 2 0.03
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCAAATAAGGGTATTTCAGT
AATTTCACAAACCAGT
Found at i:72069491 original size:54 final size:54
Alignment explanation
Indices: 72069257--72069463 Score: 155
Period size: 54 Copynumber: 3.8 Consensus size: 54
72069247 CATCCTACAA
* * * * * *** * *
72069257 GGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTCACAAACTAG
* * * * ** *** *
72069311 TGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTGTAAATTAG
1 GGGTATTT-TGGTAA-TTTTACAAACT-AAGGGTATTTCGGTAATTTCACAAACTAG
* *
72069367 GGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTCACAAACTAG
* * *
72069421 TGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATT
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATT
72069464 CTATCCTATA
Statistics
Matches: 121, Mismatches: 28, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
54 70 0.58
55 17 0.14
56 34 0.28
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTCACAAACTAG
Found at i:72069503 original size:27 final size:26
Alignment explanation
Indices: 72069365--72069496 Score: 104
Period size: 27 Copynumber: 4.9 Consensus size: 26
72069355 TTTGTAAATT
* * *
72069365 AGGGGTATTTTGGTAATTTTACAAATT
1 AGGGGTATTTCGGTAATTTCACAAA-C
*
72069392 AAGGGTATTTCGGTAATTTCACAAACC
1 AGGGGTATTTCGGTAATTTCACAAA-C
* * *
72069419 AGTGGTATTTTGGTAATTTTACAAAC
1 AGGGGTATTTCGGTAATTTCACAAAC
* ** *
72069445 TAGGGGTATTTTGGTAA-TTCTATCCTAT
1 -AGGGGTATTTCGGTAATTTC-A-CAAAC
*
72069473 AGGGGTATTTCAGTAATTTCACAA
1 AGGGGTATTTCGGTAATTTCACAA
72069497 TCGAGGGTAA
Statistics
Matches: 83, Mismatches: 18, Indels: 9
0.75 0.16 0.08
Matches are distributed among these distances:
26 4 0.05
27 74 0.89
28 5 0.06
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (26 bp):
AGGGGTATTTCGGTAATTTCACAAAC
Found at i:72069529 original size:27 final size:27
Alignment explanation
Indices: 72069495--72069667 Score: 267
Period size: 27 Copynumber: 6.4 Consensus size: 27
72069485 GTAATTTCAC
72069495 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
72069522 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
*
72069549 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
72069576 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
72069603 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
72069630 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
72069657 AATCGAGGGTA
1 AATCGAGGGTA
72069668 CTTCAATAAT
Statistics
Matches: 134, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
26 1 0.01
27 132 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:72069685 original size:54 final size:54
Alignment explanation
Indices: 72069495--72069667 Score: 294
Period size: 54 Copynumber: 3.2 Consensus size: 54
72069485 GTAATTTCAC
* *
72069495 AATCGAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATC-GAGGGTAAAATGGTAATTCTATA
*
72069549 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
*
72069603 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
72069657 AATCGAGGGTA
1 AATCGAGGGTA
72069668 CTTCAATAAT
Statistics
Matches: 113, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
54 112 0.99
55 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
Found at i:72076363 original size:38 final size:38
Alignment explanation
Indices: 72076303--72076401 Score: 164
Period size: 38 Copynumber: 2.6 Consensus size: 38
72076293 TTCATATATA
72076303 TAGTTTATTATAAGATAATTAATTTAATTTAGTTATGTTT
1 TAGTTTATT-TAA-ATAATTAATTTAATTTAGTTATGTTT
72076343 TAGTTTATTTAAATAATTAATTTAATTTAGTTATGTTT
1 TAGTTTATTTAAATAATTAATTTAATTTAGTTATGTTT
*
72076381 TAGTTTATTTAAA-CATTAATT
1 TAGTTTATTTAAATAATTAATT
72076402 ACTTAAAATA
Statistics
Matches: 58, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
37 7 0.12
38 39 0.67
39 3 0.05
40 9 0.16
ACGTcount: A:0.35, C:0.01, G:0.08, T:0.56
Consensus pattern (38 bp):
TAGTTTATTTAAATAATTAATTTAATTTAGTTATGTTT
Found at i:72077356 original size:16 final size:17
Alignment explanation
Indices: 72077324--72077361 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
72077314 GTTCCTCCTT
72077324 TTTTCTTATTGTTTTTA
1 TTTTCTTATTGTTTTTA
*
72077341 TTTTCTT-TTTTTTTTA
1 TTTTCTTATTGTTTTTA
72077357 TTTTC
1 TTTTC
72077362 CCACCTCTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.08, C:0.08, G:0.03, T:0.82
Consensus pattern (17 bp):
TTTTCTTATTGTTTTTA
Found at i:72077391 original size:13 final size:12
Alignment explanation
Indices: 72077373--72077408 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
72077363 CACCTCTATC
72077373 TTTTTTCTTTTCT
1 TTTTTTCTTTT-T
72077386 TTTTTTCTTTTT
1 TTTTTTCTTTTT
*
72077398 ATTTTTCTTTT
1 TTTTTTCTTTT
72077409 GTTGGATATG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTTTCTTTTT
Found at i:72077396 original size:20 final size:20
Alignment explanation
Indices: 72077371--72077408 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
72077361 CCCACCTCTA
72077371 TCTTTTT-TCTTTTCTTTTTT
1 TCTTTTTAT-TTTTCTTTTTT
72077391 TCTTTTTATTTTTCTTTT
1 TCTTTTTATTTTTCTTTT
72077409 GTTGGATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (20 bp):
TCTTTTTATTTTTCTTTTTT
Found at i:72078277 original size:19 final size:18
Alignment explanation
Indices: 72078245--72078283 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
72078235 CCCAAAACAA
*
72078245 AAAATAAAATAAAATAAG
1 AAAATAAAAAAAAATAAG
*
72078263 AAAATAAAAGAAAAATGAG
1 AAAATAAAA-AAAAATAAG
72078282 AA
1 AA
72078284 TGAGGAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (18 bp):
AAAATAAAAAAAAATAAG
Found at i:72084616 original size:32 final size:32
Alignment explanation
Indices: 72084580--72084667 Score: 92
Period size: 30 Copynumber: 2.8 Consensus size: 32
72084570 TTTTTTTGGT
*
72084580 CCCTTAAAAGTTGGTAAAAGAAATTTTTTAAG
1 CCCTTAAAAGTTGGTAAAAAAAATTTTTTAAG
* **
72084612 CCCTTAAAA---GCTAAAAACAAATTTTTTGGG
1 CCCTTAAAAGTTGGTAAAAA-AAATTTTTTAAG
*
72084642 CACCTTCAAAGTTGGTAAAAAAAATT
1 C-CCTTAAAAGTTGGTAAAAAAAATT
72084668 GACCTTTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
29 6 0.13
30 11 0.24
31 7 0.16
32 9 0.20
33 5 0.11
34 7 0.16
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.31
Consensus pattern (32 bp):
CCCTTAAAAGTTGGTAAAAAAAATTTTTTAAG
Found at i:72086720 original size:14 final size:15
Alignment explanation
Indices: 72086688--72086728 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
72086678 TTTTTTATAG
*
72086688 ATTTAATTA-ATTAAT
1 ATTTAA-TACATTGAT
72086703 ATTTAAT-CATTGAT
1 ATTTAATACATTGAT
72086717 ATTTAATACATT
1 ATTTAATACATT
72086729 TACAAAATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 13 0.57
15 10 0.43
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.51
Consensus pattern (15 bp):
ATTTAATACATTGAT
Found at i:72094403 original size:15 final size:15
Alignment explanation
Indices: 72094364--72094443 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
72094354 GTATCTTGGG
*
72094364 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
72094379 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
72094394 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
72094409 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
72094424 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
72094438 TTTCTT
1 TTTCTT
72094444 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:72094433 original size:30 final size:30
Alignment explanation
Indices: 72094355--72094442 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
72094345 CATAGTATCG
* * *
72094355 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
72094385 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
72094415 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
72094443 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:72101665 original size:26 final size:25
Alignment explanation
Indices: 72101636--72101694 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 25
72101626 AACAATAGTA
72101636 AAATAAT-GATATTAATACCTAAATAT
1 AAATAATAGATA-TAATACCTAAA-AT
72101662 AAAT-ATAGATATAATACCTAAAAT
1 AAATAATAGATATAATACCTAAAAT
72101686 ATAATAATA
1 A-AATAATA
72101695 ATGAAAATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
24 3 0.10
25 16 0.53
26 11 0.37
ACGTcount: A:0.58, C:0.07, G:0.03, T:0.32
Consensus pattern (25 bp):
AAATAATAGATATAATACCTAAAAT
Found at i:72101701 original size:17 final size:17
Alignment explanation
Indices: 72101681--72101976 Score: 89
Period size: 18 Copynumber: 16.0 Consensus size: 17
72101671 TATAATACCT
*
72101681 AAAATATAATAATAATG
1 AAAATATAATAATAATA
*
72101698 AAAATATAAATAGATAAGA
1 AAAATAT-AATA-ATAATA
*
72101717 AATATAAATAGATAAGTAATA
1 AA-A-ATATA-ATAA-TAATA
*
72101738 AAAAAATAA-ATATAGATA
1 AAAATATAATA-ATA-ATA
72101756 AAAATATAATAATAGTAATA
1 AAAATATAAT-A-A-TAATA
* *
72101776 ATACAATATTAATAGTAATT
1 A-A-AATA-TAATAATAATA
*
72101796 ACAATAATAATAATAATA
1 AAAAT-ATAATAATAATA
* *
72101814 ATAATA-AATATTAGCAGTA
1 AAAATATAATAATA--A-TA
72101833 AAAA-ATAATAATAATA
1 AAAATATAATAATAATA
** *
72101849 GGAATAATAATGATAATA
1 AAAAT-ATAATAATAATA
* *
72101867 AATAAAATAATAATAATG
1 AA-AATATAATAATAATA
* * * *
72101885 ATAGTCGTAATAATGATA
1 AAAAT-ATAATAATAATA
72101903 ATGACAATA-AATAATAATA
1 A--A-AATATAATAATAATA
* *
72101922 GTAAAAAATAATAATAGTA
1 --AAAATATAATAATAATA
** *
72101941 GGAATAATAATGATAATA
1 AAAAT-ATAATAATAATA
72101959 TATAAA-ATAATAATAATA
1 -A-AAATATAATAATAATA
72101977 GTAAAAAAGA
Statistics
Matches: 205, Mismatches: 42, Indels: 63
0.66 0.14 0.20
Matches are distributed among these distances:
16 10 0.05
17 15 0.07
18 91 0.44
19 44 0.21
20 18 0.09
21 18 0.09
22 5 0.02
23 4 0.02
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.29
Consensus pattern (17 bp):
AAAATATAATAATAATA
Found at i:72101725 original size:23 final size:21
Alignment explanation
Indices: 72101699--72101756 Score: 53
Period size: 23 Copynumber: 2.6 Consensus size: 21
72101689 ATAATAATGA
*
72101699 AAATATAAATAGATAAGAAATAT
1 AAATATAAATA-ATAA-AAAAAT
*
72101722 AAATAGATAAGTAATAAAAAAAT
1 AAAT--ATAAATAATAAAAAAAT
*
72101745 AAATATAGATAA
1 AAATATAAATAA
72101757 AAATATAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
21 6 0.21
23 13 0.45
24 4 0.14
25 6 0.21
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (21 bp):
AAATATAAATAATAAAAAAAT
Found at i:72101769 original size:3 final size:3
Alignment explanation
Indices: 72101723--72102152 Score: 170
Period size: 3 Copynumber: 143.7 Consensus size: 3
72101713 AAGAAATATA
* *
72101723 AAT AGAT AAGT AAT AA- AAA AAT AA- ATAT AGAT AAA AAT -AT AAT AAT
1 AAT A-AT AA-T AAT AAT AAT AAT AAT A-AT A-AT AAT AAT AAT AAT AAT
* * * * * *
72101769 AGT AAT AAT -AC AAT ATT AAT AGT AAT TAC AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* ** * **
72101816 AAT AAAT ATT AGC AGT AA- AA- AAT AAT AAT AAT AGG AAT AAT AAT
1 AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * ** *
72101860 GAT AAT AAAT AA- AAT AAT AAT AAT GAT AGT CGT AAT AAT GAT AAT
1 AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * **
72101905 GAC AAT AAAT AAT AAT AGT AA- AA- AAT AAT AAT AGT AGG AAT AAT
1 AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
72101949 AAT GAT AAT ATAT AA- AAT AAT AAT AAT AGT AA- AAA AGAT AAT TAG
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
* ** * ** * * * *
72101994 AAT AGT AGC AAT AGT AAT GGT AAT AAC GAT AAT AAAT AAT AGT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
* * * *
72102040 AAAT AAT AAA AAT AAT AAT AGT AAT AAT AAT AAA AAT AGT GAA- AAT
1 -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
* * * * *
72102086 AAT AAT AGT AAT -AT AAT AGT AGT AAT AGT AAT GAT AAT AA- ATAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
*
72102130 AAGT AAT AGT AA- AAT AAT AAT AA
1 AA-T AAT AAT AAT AAT AAT AAT AA
72102153 ATAAACTAAT
Statistics
Matches: 313, Mismatches: 88, Indels: 52
0.69 0.19 0.11
Matches are distributed among these distances:
2 27 0.09
3 252 0.81
4 34 0.11
ACGTcount: A:0.60, C:0.02, G:0.10, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:72101778 original size:41 final size:40
Alignment explanation
Indices: 72101660--72101778 Score: 120
Period size: 42 Copynumber: 2.9 Consensus size: 40
72101650 ATACCTAAAT
* *
72101660 ATAAATATAGAT-ATAATACCTAAAATA-TAATAATAATGAAA
1 ATAAATATAGATAAAAATA--TAAAATAGTAATAATAA-AAAA
72101701 ATATAA-ATAGATAAGAAATAT-AAATAGATAAGTAATAAAAAA
1 ATA-AATATAGATAA-AAATATAAAATAG-TAA-TAATAAAAAA
72101743 ATAAATATAGATAAAAATATAATAATAGTAATAATA
1 ATAAATATAGATAAAAATATAA-AATAGTAATAATA
72101779 CAATATTAAT
Statistics
Matches: 67, Mismatches: 2, Indels: 18
0.77 0.02 0.21
Matches are distributed among these distances:
40 5 0.07
41 23 0.34
42 24 0.36
43 15 0.22
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.28
Consensus pattern (40 bp):
ATAAATATAGATAAAAATATAAAATAGTAATAATAAAAAA
Found at i:72101840 original size:38 final size:37
Alignment explanation
Indices: 72101680--72101858 Score: 122
Period size: 38 Copynumber: 4.8 Consensus size: 37
72101670 ATATAATACC
* *
72101680 TAAAATATAATAATAATGAA-AAT-ATAAATAGATA-AG
1 TAAAAAATAATAATAAT-AATAATAATAAATA-TTAGAG
* *
72101716 AAATATAAATAGATAAGTAATAA-AAAAATAAATA-TAGA-
1 TAA-A-AAATA-ATAA-TAATAATAATAATAAATATTAGAG
* *
72101754 T-AAAAAT-ATAATAATAGTAATAATACAATATTAATAG
1 TAAAAAATAATAATAATAATAATAATA-AATATT-AGAG
*
72101791 TAATTACAATAATAATAATAATAATAATAAATATTAGCAG
1 TAA--AAAATAATAATAATAATAATAATAAATATTAG-AG
**
72101831 TAAAAAATAATAATAATAGGAATAATAA
1 TAAAAAATAATAATAATAATAATAATAA
72101859 TGATAATAAA
Statistics
Matches: 114, Mismatches: 13, Indels: 30
0.73 0.08 0.19
Matches are distributed among these distances:
32 5 0.04
33 10 0.09
34 4 0.04
35 5 0.04
36 5 0.04
37 3 0.03
38 29 0.25
39 10 0.09
40 26 0.23
41 17 0.15
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (37 bp):
TAAAAAATAATAATAATAATAATAATAAATATTAGAG
Found at i:72101925 original size:92 final size:92
Alignment explanation
Indices: 72101800--72101975 Score: 280
Period size: 92 Copynumber: 1.9 Consensus size: 92
72101790 GTAATTACAA
* * *
72101800 TAATAATAATAATAATAATAAATATTAGCAGTAAAAAATAATAATAATAGGAATAATAATGATAA
1 TAATAATAATAATAACAATAAATAATAACAGTAAAAAATAATAATAATAGGAATAATAATGATAA
72101865 TAAATAAAATAATAATAATGATAGTCG
66 TAAATAAAATAATAATAATGATAGTCG
* * * *
72101892 TAATAATGATAATGACAATAAATAATAATAGTAAAAAATAATAATAGTAGGAATAATAATGATAA
1 TAATAATAATAATAACAATAAATAATAACAGTAAAAAATAATAATAATAGGAATAATAATGATAA
*
72101957 TATATAAAATAATAATAAT
66 TAAATAAAATAATAATAAT
72101976 AGTAAAAAAG
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
92 76 1.00
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.30
Consensus pattern (92 bp):
TAATAATAATAATAACAATAAATAATAACAGTAAAAAATAATAATAATAGGAATAATAATGATAA
TAAATAAAATAATAATAATGATAGTCG
Found at i:72101973 original size:15 final size:16
Alignment explanation
Indices: 72101911--72101973 Score: 56
Period size: 16 Copynumber: 3.7 Consensus size: 16
72101901 TAATGACAAT
*
72101911 AAATAATAATAGTAAA
1 AAATAATAATAGTATA
72101927 AAATAATAATAGTAGGAATA
1 AAATAATAATAGT----ATA
*
72101947 ATAATGATAATA-TATA
1 A-AATAATAATAGTATA
72101963 AAATAATAATA
1 AAATAATAATA
72101974 ATAGTAAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 11
0.74 0.06 0.21
Matches are distributed among these distances:
15 9 0.23
16 17 0.44
20 4 0.10
21 9 0.23
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (16 bp):
AAATAATAATAGTATA
Found at i:72101989 original size:18 final size:19
Alignment explanation
Indices: 72101913--72101990 Score: 67
Period size: 19 Copynumber: 4.3 Consensus size: 19
72101903 ATGACAATAA
*
72101913 ATAATAATAGTAAAAAATA
1 ATAATAATAGTAAAAAATG
* *
72101932 ATAATAGTAGGAATAATAATG
1 ATAATAATAGTAA-AA-AATG
*
72101953 ATAAT-ATA-T--AAAATA
1 ATAATAATAGTAAAAAATG
72101968 ATAATAATAGTAAAAAA-G
1 ATAATAATAGTAAAAAATG
72101986 ATAAT
1 ATAAT
72101991 TAGAATAGTA
Statistics
Matches: 46, Mismatches: 7, Indels: 13
0.70 0.11 0.20
Matches are distributed among these distances:
15 8 0.17
16 5 0.11
17 1 0.02
18 5 0.11
19 15 0.33
20 4 0.09
21 8 0.17
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (19 bp):
ATAATAATAGTAAAAAATG
Found at i:72103279 original size:11 final size:11
Alignment explanation
Indices: 72103252--72103298 Score: 58
Period size: 11 Copynumber: 4.2 Consensus size: 11
72103242 GAGCTGATAG
*
72103252 TTGGGTTTAGGT
1 TTGGGTTT-GTT
*
72103264 TTGGGTTGGTT
1 TTGGGTTTGTT
*
72103275 TTGGGTTTGTA
1 TTGGGTTTGTT
72103286 TTGGGTTTGTT
1 TTGGGTTTGTT
72103297 TT
1 TT
72103299 AGCCTGGACC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
11 23 0.77
12 7 0.23
ACGTcount: A:0.04, C:0.00, G:0.38, T:0.57
Consensus pattern (11 bp):
TTGGGTTTGTT
Found at i:72103294 original size:17 final size:17
Alignment explanation
Indices: 72103252--72103294 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
72103242 GAGCTGATAG
* *
72103252 TTGGGTTTAGGTTTGGG
1 TTGGGTTTGGGTTTGGA
* *
72103269 TTGGTTTTGGGTTTGTA
1 TTGGGTTTGGGTTTGGA
72103286 TTGGGTTTG
1 TTGGGTTTG
72103295 TTTTAGCCTG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.05, C:0.00, G:0.42, T:0.53
Consensus pattern (17 bp):
TTGGGTTTGGGTTTGGA
Found at i:72103577 original size:44 final size:44
Alignment explanation
Indices: 72103495--72103802 Score: 162
Period size: 44 Copynumber: 6.9 Consensus size: 44
72103485 TCTGCGTCTT
* * * *
72103495 GTTGCTTCGATCCACTTCA-TGCAACTTCAGAGG-TATAGGACTT-
1 GTTGCTTCAATCTACTCCACTGCAACTTCAG-GGAGATAGGA-TTA
* * *
72103538 GTTGCTTTAATCTACTCTACTGCAACTTCATGGAGATAGGATTA
1 GTTGCTTCAATCTACTCCACTGCAACTTCAGGGAGATAGGATTA
* * * * * * *
72103582 GTAGCTTCAATTTGCTCCGCTGTAACTTCAGGGAGATAAGATTG
1 GTTGCTTCAATCTACTCCACTGCAACTTCAGGGAGATAGGATTA
* * * * *
72103626 GTAT-CTTCAATCTGCTCTACTGTATCTTCAGGGAGATAAGACTTGTA
1 GT-TGCTTCAATCTACTCCACTGCAACTTCAGGGAGATAGGA--T-TA
* ** * * *
72103673 GTGGTAGATTTTATCCGAC-CTACTGCAACTTCAGAGG-TATAGGGATT-
1 GT--T-GCTTCAAT-CTACTCCACTGCAACTTCAG-GGAGATA-GGATTA
* * * **
72103720 GTTGCTTTAATCTGCTCCACTACAACTTCATAGAGATAGGATTA
1 GTTGCTTCAATCTACTCCACTGCAACTTCAGGGAGATAGGATTA
* *
72103764 GTTGTCTTCAGTCTACTCCACTGTAACTTCAGGGAGATA
1 GTTG-CTTCAATCTACTCCACTGCAACTTCAGGGAGATA
72103803 AGACTTGAAC
Statistics
Matches: 199, Mismatches: 49, Indels: 32
0.71 0.17 0.11
Matches are distributed among these distances:
43 26 0.13
44 110 0.55
45 28 0.14
46 1 0.01
47 5 0.03
48 2 0.01
49 1 0.01
50 20 0.10
51 6 0.03
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.34
Consensus pattern (44 bp):
GTTGCTTCAATCTACTCCACTGCAACTTCAGGGAGATAGGATTA
Found at i:72103829 original size:182 final size:182
Alignment explanation
Indices: 72103514--72103846 Score: 494
Period size: 182 Copynumber: 1.8 Consensus size: 182
72103504 ATCCACTTCA
* * *
72103514 TGCAACTTCAGAGGTATAGGACTTGTTGCTTTAATCTACTCTACTGCAACTTCATGGAGATAGGA
1 TGCAACTTCAGAGGTATAGGACTTGTTGCTTTAATCTACTCCACTACAACTTCATAGAGATAGGA
* * * * *
72103579 TTAGTAGCTTCAATTTGCTCCGCTGTAACTTCAGGGAGATAAGATTGGTATCTTCAATCTGCTCT
66 TTAGTAGCTTCAATCTACTCCACTGTAACTTCAGGGAGATAAGATTGGTAACTTCAACCTGCTCT
72103644 ACTG-TATCTTCAGGGAGATAAGACTTGTAGTGGTAGATTTTATCCGACCTAC
131 ACTGCTA-CTTCAGGGAGATAAGACTTGTAGTGGTAGATTTTATCCGACCTAC
*
72103696 TGCAACTTCAGAGGTATAGGGA-TTGTTGCTTTAATCTGCTCCACTACAACTTCATAGAGATAGG
1 TGCAACTTCAGAGGTATA-GGACTTGTTGCTTTAATCTACTCCACTACAACTTCATAGAGATAGG
* * *
72103760 ATTAGTTGTCTTCAGTCTACTCCACTGTAACTTCAGGGAGATAAGACTT-G-AACTTCAACCTGT
65 ATTAGTAG-CTTCAATCTACTCCACTGTAACTTCAGGGAGATAAGA-TTGGTAACTTCAACCTGC
72103823 TCTACTGCTACTTCAGGGAGATAA
128 TCTACTGCTACTTCAGGGAGATAA
72103847 AGTTTACTAT
Statistics
Matches: 135, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
182 94 0.70
183 39 0.29
184 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.33
Consensus pattern (182 bp):
TGCAACTTCAGAGGTATAGGACTTGTTGCTTTAATCTACTCCACTACAACTTCATAGAGATAGGA
TTAGTAGCTTCAATCTACTCCACTGTAACTTCAGGGAGATAAGATTGGTAACTTCAACCTGCTCT
ACTGCTACTTCAGGGAGATAAGACTTGTAGTGGTAGATTTTATCCGACCTAC
Found at i:72104189 original size:44 final size:43
Alignment explanation
Indices: 72104137--72104681 Score: 275
Period size: 44 Copynumber: 12.6 Consensus size: 43
72104127 TTCAATTTGG
* *
72104137 TCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAGCCTAC
1 TCCACTACTGCTTAGGGAGATAAGAT-TGTAGTCTTTAGTCTAC
* * * * * * *
72104181 TCCACTACTGCTTAGGGAGATAGGATGGT-GGCATAAATCTGC
1 TCCACTACTGCTTAGGGAGATAAGATTGTAGTCTTTAGTCTAC
* ** * *
72104223 TCCACTACTGCTTAGGGAGACAAGATTCGCCGTC-TTCGATCTGC
1 TCCACTACTGCTTAGGGAGATAAGATT-GTAGTCTTTAG-TCTAC
** * * * * *
72104267 TCCACTACTATTTAGAGAAATAAGATCTGTAATCTTCAGCCTAC
1 TCCACTACTGCTTAGGGAGATAAGAT-TGTAGTCTTTAGTCTAC
* * * * * * *
72104311 TCCACTACTGCTTAGGGAGATAGGATGGT-GGCATAAATCTGC
1 TCCACTACTGCTTAGGGAGATAAGATTGTAGTCTTTAGTCTAC
* * ** *
72104353 TCCACTACTGCTTAAGGAGACAAGATTCGCCGTC-TTCGATCTAC
1 TCCACTACTGCTTAGGGAGATAAGATT-GTAGTCTTTAG-TCTAC
* * * * *
72104397 TCCACTACTGCTTAGGGAGAAAAGATCTATAATCTTCAGCCTAC
1 TCCACTACTGCTTAGGGAGATAAGAT-TGTAGTCTTTAGTCTAC
* * * * * * *
72104441 TCCACTATTGCTTAGGGAGATAGGATGGT-GGCTTAAATATAC
1 TCCACTACTGCTTAGGGAGATAAGATTGTAGTCTTTAGTCTAC
** * * *
72104483 TCCACTACTGCTTAAAGAGACAAGATT-T--TCCATATTCGATCTAT
1 TCCACTACTGCTTAGGGAGATAAGATTGTAGT-C-T-TTAG-TCTAC
* * * * *
72104527 TCCACTACAGCTTAGGGAGATAAGATCTATAGTCTATAGCCTTC
1 TCCACTACTGCTTAGGGAGATAAGAT-TGTAGTCTTTAGTCTAC
* * * **
72104571 TTCACTACTGCTTAGGGAGATAGGATGGT-GTC-TTA-AATAGC
1 TCCACTACTGCTTAGGGAGATAAGATTGTAGTCTTTAGTCTA-C
* * * * * *
72104612 TCCACTACTACTTAGGGAGACAAGATTCGTCGTCTTCAATCTGC
1 TCCACTACTGCTTAGGGAGATAAGATT-GTAGTCTTTAGTCTAC
* *
72104656 TCCAATACTACTTAGGGAGATAAGAT
1 TCCACTACTGCTTAGGGAGATAAGAT
72104682 CTACAATCAT
Statistics
Matches: 365, Mismatches: 113, Indels: 46
0.70 0.22 0.09
Matches are distributed among these distances:
40 1 0.00
41 27 0.07
42 93 0.25
43 14 0.04
44 216 0.59
45 10 0.03
46 2 0.01
47 1 0.00
48 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (43 bp):
TCCACTACTGCTTAGGGAGATAAGATTGTAGTCTTTAGTCTAC
Found at i:72104239 original size:86 final size:86
Alignment explanation
Indices: 72104137--72104681 Score: 264
Period size: 86 Copynumber: 6.3 Consensus size: 86
72104127 TTCAATTTGG
72104137 TCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAGCCTACTCCACTACTGCTTAGGGAGAT
1 TCCACTACTGCTTAGGGAGATAAGAT-TGTAATCTTTAGCCTACTCCACTACTGCTTAGGGAGAT
* * *
72104202 AGGAT-GGTGGCATAAATCTGC
65 AAGATCGGTGGCTTAAATCTAC
* *** * * * ** * *
72104223 TCCACTACTGCTTAGGGAGACAAGATTCGCCGTC-TTCGATCTGCTCCACTACTATTTAGAGAAA
1 TCCACTACTGCTTAGGGAGATAAGATT-GTAATCTTTAG-CCTACTCCACTACTGCTTAGGGAGA
* ** * **
72104287 TAAGATCTGTAATCTTCAGCCTAC
64 TAAGATCGGT-GGCTTAAATCTAC
* * ** * * ** * * *
72104311 TCCACTACTGCTTAGGGAGATAGGATGGT-GGCATAAATCTGCTCCACTACTGCTTAAGGAGACA
1 TCCACTACTGCTTAGGGAGATAAGATTGTAATCTTTAGCCTACTCCACTACTGCTTAGGGAGATA
** * **
72104375 AGATTCGCCGTCTTCGATCTAC
66 AGA-TCGGTGGCTTAAATCTAC
* * * *
72104397 TCCACTACTGCTTAGGGAGAAAAGATCTATAATCTTCAGCCTACTCCACTATTGCTTAGGGAGAT
1 TCCACTACTGCTTAGGGAGATAAGAT-TGTAATCTTTAGCCTACTCCACTACTGCTTAGGGAGAT
* *
72104462 AGGAT-GGTGGCTTAAATATAC
65 AAGATCGGTGGCTTAAATCTAC
** * * * * * * * *
72104483 TCCACTACTGCTTAAAGAGACAAGATTTTCCAT-ATTCGATCTATTCCACTACAGCTTAGGGAGA
1 TCCACTACTGCTTAGGGAGATAAGATTGT-AATCTTTAG-CCTACTCCACTACTGCTTAGGGAGA
** * ** *
72104547 TAAGATCTATAG-TCTATAGCCTTC
64 TAAGATCGGTGGCT-TA-AATCTAC
* * * * ** * *
72104571 TTCACTACTGCTTAGGGAGATAGGATGGT-GTC-TTA-AATAGCTCCACTACTACTTAGGGAGAC
1 TCCACTACTGCTTAGGGAGATAAGATTGTAATCTTTAGCCTA-CTCCACTACTGCTTAGGGAGAT
* * *
72104633 AAGATTC-GTCGTCTTCAATCTGC
65 AAGA-TCGGT-GGCTTAAATCTAC
* *
72104656 TCCAATACTACTTAGGGAGATAAGAT
1 TCCACTACTGCTTAGGGAGATAAGAT
72104682 CTACAATCAT
Statistics
Matches: 333, Mismatches: 108, Indels: 37
0.70 0.23 0.08
Matches are distributed among these distances:
84 2 0.01
85 57 0.17
86 179 0.54
87 13 0.04
88 82 0.25
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (86 bp):
TCCACTACTGCTTAGGGAGATAAGATTGTAATCTTTAGCCTACTCCACTACTGCTTAGGGAGATA
AGATCGGTGGCTTAAATCTAC
Found at i:72104271 original size:130 final size:130
Alignment explanation
Indices: 72104137--72104689 Score: 768
Period size: 130 Copynumber: 4.3 Consensus size: 130
72104127 TTCAATTTGG
* *
72104137 TCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAGCCTACTCCACTACTGCTTAGGGAGAT
1 TCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAGCCTACTCCACTACTGCTTAGGGAGAT
* *
72104202 AGGATGGTGGCATAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTCGCCGTCTTCGATCTGC
66 AGGATGGTGGCATAAATCTGCTCCACTACTGCTTAAGGAGACAAGATTCGCCGTCTTCGATCTAC
** * * *
72104267 TCCACTACTATTTAGAGAAATAAGATCTGTAATCTTCAGCCTACTCCACTACTGCTTAGGGAGAT
1 TCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAGCCTACTCCACTACTGCTTAGGGAGAT
72104332 AGGATGGTGGCATAAATCTGCTCCACTACTGCTTAAGGAGACAAGATTCGCCGTCTTCGATCTAC
66 AGGATGGTGGCATAAATCTGCTCCACTACTGCTTAAGGAGACAAGATTCGCCGTCTTCGATCTAC
* *
72104397 TCCACTACTGCTTAGGGAGAAAAGATCTATAATCTTCAGCCTACTCCACTATTGCTTAGGGAGAT
1 TCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAGCCTACTCCACTACTGCTTAGGGAGAT
* * * * ** * * *
72104462 AGGATGGTGGCTTAAATATACTCCACTACTGCTTAAAGAGACAAGATTTTCCATATTCGATCTAT
66 AGGATGGTGGCATAAATCTGCTCCACTACTGCTTAAGGAGACAAGATTCGCCGTCTTCGATCTAC
* * * *
72104527 TCCACTACAGCTTAGGGAGATAAGATCTATAGTCTAT-AGCCTTCTTCACTACTGCTTAGGGAGA
1 TCCACTACTGCTTAGGGAGATAAGATCTATAATCT-TCAGCCTACTCCACTACTGCTTAGGGAGA
* * * * * * * *
72104591 TAGGATGGTGTCTTAAAT-AGCTCCACTACTACTTAGGGAGACAAGATTCGTCGTCTTCAATCTG
65 TAGGATGGTGGCATAAATCTGCTCCACTACTGCTTAAGGAGACAAGATTCGCCGTCTTCGATCTA
72104655 C
130 C
* * *
72104656 TCCAATACTACTTAGGGAGATAAGATCTACAATC
1 TCCACTACTGCTTAGGGAGATAAGATCTATAATC
72104690 ATTAACCTAC
Statistics
Matches: 374, Mismatches: 48, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
129 63 0.17
130 310 0.83
131 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (130 bp):
TCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAGCCTACTCCACTACTGCTTAGGGAGAT
AGGATGGTGGCATAAATCTGCTCCACTACTGCTTAAGGAGACAAGATTCGCCGTCTTCGATCTAC
Found at i:72104751 original size:44 final size:44
Alignment explanation
Indices: 72104703--72105241 Score: 297
Period size: 44 Copynumber: 12.2 Consensus size: 44
72104693 AACCTACTTC
* *
72104703 CTTGCTACCTCAGGAAGATAAGACTTCAGTCTTCAACCTGCTCT
1 CTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAATCTGCTCT
* ***** ** * *
72104747 CTTGCTACCTCA-GAGAGATAAGGCTGGTGGCTAAAATTTGCTCC
1 CTTGCTACCTCAGGA-AGATAAGACTTCAATCTTCAATCTGCTCT
* * * *
72104791 CCTGCTACCTCA-GAAGATAAGATTTGCCATCTTCGATCTGCTCCACT
1 CTTGCTACCTCAGGAAGATAAGACTT-CAATCTTCAATCTGCT---CT
* * * *
72104838 ATTG-T---TTAGGGAGATAAGATCTTCAATCTTCAGTCTGCT-T
1 CTTGCTACCTCAGGAAGATAAGA-CTTCAATCTTCAATCTGCTCT
*
72104878 CATTGCTACCTCAGGAAGATAAGACTTCAATCTTCAACCTGCTCT
1 C-TTGCTACCTCAGGAAGATAAGACTTCAATCTTCAATCTGCTCT
* * ***** ** *
72104923 TTTGCTACCTTAGG-AGATAAGACTGGTGGCTAAAATCTGCTCC
1 CTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAATCTGCTCT
* * * *
72104966 CCTGCTACCTCGGGAAGATAAGA-TTCGCCATCTTCGATCT--TCT
1 CTTGCTACCTCAGGAAGATAAGACTT--CAATCTTCAATCTGCTCT
** * * *
72105009 C-CACTACTGCTTAGGGAGATAAGATCTTCAATCCTT-AGTCTGCT-T
1 CTTGCTAC--CTCAGGAAGATAAGA-CTTCAAT-CTTCAATCTGCTCT
*
72105054 CCTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAACCTGCTCT
1 -CTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAATCTGCTCT
* * * *
72105099 CTTGCTACCTCGGGAAGATAAGATTTGCCATCTTCGAT-TAGCTC-
1 CTTGCTACCTCAGGAAGATAAGACTT-CAATCTTCAATCT-GCTCT
* * * * *
72105143 C--ACTACTGCTTAGGGAGATAAGATCTTCAATCCTCAGTCTGCT-T
1 CTTGCTAC--CTCAGGAAGATAAGA-CTTCAATCTTCAATCTGCTCT
* *
72105187 CCTTGCTACCTCAGGAAGATAAGACTTCAATCTTTAACCTGCTCT
1 -CTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAATCTGCTCT
72105232 CTTGCTACCT
1 CTTGCTACCT
72105242 TAGAGAGATA
Statistics
Matches: 362, Mismatches: 95, Indels: 76
0.68 0.18 0.14
Matches are distributed among these distances:
40 1 0.00
41 3 0.01
42 9 0.02
43 49 0.14
44 215 0.59
45 69 0.19
46 5 0.01
47 11 0.03
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.31
Consensus pattern (44 bp):
CTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAATCTGCTCT
Found at i:72104985 original size:176 final size:175
Alignment explanation
Indices: 72104633--72105109 Score: 731
Period size: 176 Copynumber: 2.7 Consensus size: 175
72104623 TTAGGGAGAC
* * * * * * **
72104633 AAGATTCGTCGTCTTCAATCTGCTCCAATACTACTTAGGGAGATAAGATCTACAATCATTAACCT
1 AAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATC-TTAGTCT
* *
72104698 ACTTCCTTGCTACCTCAGGAAGATAAGACTTCAGTCTTCAACCTGCTCTCTTGCTACCTCAGAGA
65 GCTTCCTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGA
* *
72104763 GATAAGGCTGGTGGCTAAAATTTGCTCCCCTGCTACCTCAGAAGAT
130 GATAAGACTGGTGGCTAAAATCTGCTCCCCTGCTACCTCAGAAGAT
* * *
72104809 AAGATTTGCCATCTTCGATCTGCTCCACTATTGTTTAGGGAGATAAGATCTTCAATCTTCAGTCT
1 AAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTT-AGTCT
* * *
72104874 GCTTCATTGCTACCTCAGGAAGATAAGACTTCAATCTTCAACCTGCTCTTTTGCTACCTTAG-GA
65 GCTTCCTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGA
*
72104938 GATAAGACTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGAT
130 GATAAGACTGGTGGCTAAAATCTGCTCCCCTGCTACCTC-AGAAGAT
*
72104985 AAGATTCGCCATCTTCGATCTTCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCCTTAGTCT
1 AAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAAT-CTTAGTCT
72105050 GCTTCCTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAACCTGCTCTCTTGCTACCTC
65 GCTTCCTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAACCTGCTCTCTTGCTACCTC
72105110 GGGAAGATAA
Statistics
Matches: 272, Mismatches: 26, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
175 41 0.15
176 228 0.84
177 3 0.01
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (175 bp):
AAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTAGTCTG
CTTCCTTGCTACCTCAGGAAGATAAGACTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAG
ATAAGACTGGTGGCTAAAATCTGCTCCCCTGCTACCTCAGAAGAT
Found at i:72105121 original size:133 final size:133
Alignment explanation
Indices: 72104959--72105241 Score: 496
Period size: 133 Copynumber: 2.1 Consensus size: 133
72104949 TGGCTAAAAT
* * *
72104959 CTGCTCCCCTGCTACCTCGGGAAGATAAGATTCGCCATCTTCGATCT-TCTCCACTACTGCTTAG
1 CTGCTCTCTTGCTACCTCGGGAAGATAAGATTCGCCATCTTCGAT-TAGCTCCACTACTGCTTAG
*
72105023 GGAGATAAGATCTTCAATCCTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTCAATCTT
65 GGAGATAAGATCTTCAATCCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTCAATCTT
72105088 CAAC
130 CAAC
*
72105092 CTGCTCTCTTGCTACCTCGGGAAGATAAGATTTGCCATCTTCGATTAGCTCCACTACTGCTTAGG
1 CTGCTCTCTTGCTACCTCGGGAAGATAAGATTCGCCATCTTCGATTAGCTCCACTACTGCTTAGG
*
72105157 GAGATAAGATCTTCAATCCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTCAATCTTT
66 GAGATAAGATCTTCAATCCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTCAATCTTC
72105222 AAC
131 AAC
72105225 CTGCTCTCTTGCTACCT
1 CTGCTCTCTTGCTACCT
72105242 TAGAGAGATA
Statistics
Matches: 143, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
132 1 0.01
133 142 0.99
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.31
Consensus pattern (133 bp):
CTGCTCTCTTGCTACCTCGGGAAGATAAGATTCGCCATCTTCGATTAGCTCCACTACTGCTTAGG
GAGATAAGATCTTCAATCCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTCAATCTTC
AAC
Done.