Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 213 of 297
Found at i:72444180 original size:48 final size:48
Alignment explanation
Indices: 72444104--72445219 Score: 2126
Period size: 48 Copynumber: 23.3 Consensus size: 48
72444094 TATATGAGAT
* *
72444104 ATATGTATGAGATATGTATATGTTGTAAAGCCGAATGGATAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
72444152 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAAGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
72444200 ATATGTATGAGATATGTATATGTTGTAAAGCCGAATGGCTAGTGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
72444248 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAAGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
72444296 ATATGTATGAGATATGTATATGTTGTAAAGCCGAATGGATAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
72444344 A-ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
72444391 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
72444439 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
72444487 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
72444535 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
72444583 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
72444631 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
72444679 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
72444727 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
72444775 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
72444823 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
72444871 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
72444919 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
72444967 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
72445015 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
72445063 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
72445111 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
72445159 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
72445207 ATATGTAGGAGAT
1 ATATGTATGAGAT
72445220 GTGTGTATAT
Statistics
Matches: 1049, Mismatches: 18, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 0.04
48 1004 0.96
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:72445414 original size:37 final size:37
Alignment explanation
Indices: 72445364--72445456 Score: 159
Period size: 37 Copynumber: 2.5 Consensus size: 37
72445354 ATATATTCCA
72445364 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
* *
72445401 GGTAAGACCCGATGACTACGTGTGGTGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
*
72445438 GGTAAGACCCGATAACTAC
1 GGTAAGACCCGATGACTAC
72445457 ATGTCTCCAT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
Found at i:72449716 original size:28 final size:29
Alignment explanation
Indices: 72449652--72449717 Score: 116
Period size: 29 Copynumber: 2.3 Consensus size: 29
72449642 ATGGCTTATG
*
72449652 AGGCCCAAATCACATTTATGTGGCCCATT
1 AGGCCCAAATCACATTTATATGGCCCATT
72449681 AGGCCCAAATCACATTTATATGG-CCATT
1 AGGCCCAAATCACATTTATATGGCCCATT
72449709 AGGCCCAAA
1 AGGCCCAAA
72449718 AAAATATACA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
28 14 0.39
29 22 0.61
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (29 bp):
AGGCCCAAATCACATTTATATGGCCCATT
Found at i:72449963 original size:16 final size:16
Alignment explanation
Indices: 72449939--72449973 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
72449929 GTAGCCAAAC
* *
72449939 TTTCGGCTTTTCGGTA
1 TTTCAGCTTTTCGGCA
72449955 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
72449971 TTT
1 TTT
72449974 TGGGATTTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.20, G:0.20, T:0.51
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:72456133 original size:23 final size:23
Alignment explanation
Indices: 72456084--72456133 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
72456074 GACTCACCAT
* *
72456084 AGCTCATATGAGCTTACTATTTT
1 AGCTCATAGGAGCTTACTATTTC
72456107 AGCTCATAGGAGCTTACTGA-TTC
1 AGCTCATAGGAGCTTACT-ATTTC
72456130 AGCT
1 AGCT
72456134 NNNNNNNNNN
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 23 0.96
24 1 0.04
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (23 bp):
AGCTCATAGGAGCTTACTATTTC
Found at i:72456205 original size:22 final size:22
Alignment explanation
Indices: 72456173--72456230 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 22
72456163 NNNNNNNGGA
*
72456173 AGAGCTCACTATGCAGCTCAAT
1 AGAGCTTACTATGCAGCTCAAT
* *
72456195 AGAGCTTACTATTTTCAGCTCGAT
1 AGAGCTTACTA--TGCAGCTCAAT
72456219 AGAGCTTACTAT
1 AGAGCTTACTAT
72456231 TATCAGCTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
22 11 0.35
24 20 0.65
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (22 bp):
AGAGCTTACTATGCAGCTCAAT
Found at i:72456220 original size:24 final size:24
Alignment explanation
Indices: 72456186--72456240 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
72456176 GCTCACTATG
*
72456186 CAGCTCAATAGAGCTTACTATTTT
1 CAGCTCAATAGAGCTTACTATTAT
*
72456210 CAGCTCGATAGAGCTTACTATTAT
1 CAGCTCAATAGAGCTTACTATTAT
72456234 CAGCTCA
1 CAGCTCA
72456241 TGAAGAGCCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.33
Consensus pattern (24 bp):
CAGCTCAATAGAGCTTACTATTAT
Found at i:72459068 original size:40 final size:40
Alignment explanation
Indices: 72459012--72459188 Score: 252
Period size: 40 Copynumber: 4.5 Consensus size: 40
72459002 GGATGATAAT
* * *
72459012 CGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
72459052 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
72459092 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
72459132 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
*
72459172 C-GGCTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
72459189 TACTTAGTTT
Statistics
Matches: 126, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 17 0.13
40 108 0.86
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:72461156 original size:40 final size:40
Alignment explanation
Indices: 72461055--72461200 Score: 188
Period size: 40 Copynumber: 3.6 Consensus size: 40
72461045 TCAAATTTTC
*
72461055 GCACACTAAGTGCCAATACATAGCCGAAGCTATTT-TAATCT
1 GCACACTAAGTGCC-ATACATAGCCGAAGCTATTTCGAAT-T
* *
72461096 -CACATACTAAGTACCATACATAGCAGAAGCTATTTCGAATT
1 GCAC--ACTAAGTGCCATACATAGCCGAAGCTATTTCGAATT
* * *
72461137 GCACACTAAGTGCCATACATTGCCGAAGCTATCTCGAATC
1 GCACACTAAGTGCCATACATAGCCGAAGCTATTTCGAATT
72461177 GCACACTAAGTGCCATACATAGCC
1 GCACACTAAGTGCCATACATAGCC
72461201 AAATTGTCGT
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
40 57 0.62
41 20 0.22
42 15 0.16
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (40 bp):
GCACACTAAGTGCCATACATAGCCGAAGCTATTTCGAATT
Found at i:72462080 original size:51 final size:51
Alignment explanation
Indices: 72462016--72462151 Score: 164
Period size: 51 Copynumber: 2.7 Consensus size: 51
72462006 TGGAAACATG
*
72462016 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * ** * * *
72462067 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * *
72462118 ATCTTAGAAGATATGATATTATATTCTAAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
72462152 TTGATGATAG
Statistics
Matches: 67, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 67 1.00
ACGTcount: A:0.41, C:0.06, G:0.13, T:0.40
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
Found at i:72464034 original size:96 final size:96
Alignment explanation
Indices: 72463868--72464154 Score: 466
Period size: 96 Copynumber: 3.0 Consensus size: 96
72463858 GTGTCCGAGG
* * * * * * *
72463868 AAGTCTGTTATCGATGGGAATGATCGAGCATATACGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
*
72463933 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGA
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGA
72463964 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
* *
72464029 TAAAGCTGAAGCCAAGAGGGCAAAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGA
*
72464060 AAGTCTATCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
*
72464125 TAAAGCCGAAGCCAAGAGGGCTAAGAGGAG
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAG
72464155 CAAAAAGAAG
Statistics
Matches: 178, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 178 1.00
ACGTcount: A:0.36, C:0.17, G:0.34, T:0.13
Consensus pattern (96 bp):
AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGA
Found at i:72465128 original size:51 final size:51
Alignment explanation
Indices: 72465064--72465199 Score: 164
Period size: 51 Copynumber: 2.7 Consensus size: 51
72465054 TGGAAACATG
*
72465064 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * ** * * *
72465115 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * *
72465166 ATCTTAGAAGATATGATATTATATTCTAAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
72465200 TTGATGATAG
Statistics
Matches: 67, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 67 1.00
ACGTcount: A:0.41, C:0.06, G:0.13, T:0.40
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
Found at i:72471701 original size:56 final size:56
Alignment explanation
Indices: 72471639--72471814 Score: 235
Period size: 56 Copynumber: 3.1 Consensus size: 56
72471629 CATATCGAAA
* *
72471639 TCACATATCGATGCCAACATATGAAATGTGGTCTTACTCGCACACATATATTGGAG
1 TCACATATCGATGCCAACATATAAAATGTGATCTTACTCGCACACATATATTGGAG
* * ** * * *
72471695 TCACATATCGATGACGACATATAAAACATGATCTTACTCGCGCACATATATCGCAG
1 TCACATATCGATGCCAACATATAAAATGTGATCTTACTCGCACACATATATTGGAG
** * *
72471751 TCACATATCGATGCCAATGTATAAAATGTGATCTTACTCACACACATATATTGGAA
1 TCACATATCGATGCCAACATATAAAATGTGATCTTACTCGCACACATATATTGGAG
72471807 TCACATAT
1 TCACATAT
72471815 ACTTCTATGT
Statistics
Matches: 100, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
56 100 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.28
Consensus pattern (56 bp):
TCACATATCGATGCCAACATATAAAATGTGATCTTACTCGCACACATATATTGGAG
Found at i:72478485 original size:75 final size:75
Alignment explanation
Indices: 72478375--72478520 Score: 283
Period size: 75 Copynumber: 1.9 Consensus size: 75
72478365 CGGCCTTGGA
72478375 ACATGGGCGTGTGTCTTGGTCCTGTGACTTCAATTTGTTGATGACATCATAAACAGAGAGTTACA
1 ACATGGGCGTGTGTCTTGGTCCTGTGACTTCAATTTGTTGATGACATCATAAACAGAGAGTTACA
72478440 CGGGTTAAGT
66 CGGGTTAAGT
*
72478450 ACATGGGCGTGTGTCTTGGTCGTGTGACTTCAATTTGTTGATGACATCATAAACAGAGAGTTACA
1 ACATGGGCGTGTGTCTTGGTCCTGTGACTTCAATTTGTTGATGACATCATAAACAGAGAGTTACA
72478515 CGGGTT
66 CGGGTT
72478521 TAGGATACGA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 70 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (75 bp):
ACATGGGCGTGTGTCTTGGTCCTGTGACTTCAATTTGTTGATGACATCATAAACAGAGAGTTACA
CGGGTTAAGT
Found at i:72478535 original size:75 final size:75
Alignment explanation
Indices: 72478381--72478538 Score: 262
Period size: 75 Copynumber: 2.1 Consensus size: 75
72478371 TGGAACATGG
72478381 GCGTGTGTCTTGGTCCTGTGACTTCAATTTGTTGATGACATCATAAACAGAGAGTTACACGGGTT
1 GCGTGTGTCTTGGTCCTGTGACTTCAATTTGTTGATGACATCATAAACAGAGAGTTACACGGGTT
* * *
72478446 AAGTACATGG
66 AAGGACACGA
*
72478456 GCGTGTGTCTTGGTCGTGTGACTTCAATTTGTTGATGACATCATAAACAGAGAGTTACACGGGTT
1 GCGTGTGTCTTGGTCCTGTGACTTCAATTTGTTGATGACATCATAAACAGAGAGTTACACGGGTT
* *
72478521 TAGGATACGA
66 AAGGACACGA
72478531 GCGTGTGT
1 GCGTGTGT
72478539 GACCACACGG
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 77 1.00
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.32
Consensus pattern (75 bp):
GCGTGTGTCTTGGTCCTGTGACTTCAATTTGTTGATGACATCATAAACAGAGAGTTACACGGGTT
AAGGACACGA
Found at i:72481329 original size:26 final size:27
Alignment explanation
Indices: 72481288--72481347 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 27
72481278 GGAAGTACTA
72481288 TACTGGTGGCTCTGCCACAACTACTGT
1 TACTGGTGGCTCTGCCACAACTACTGT
* **
72481315 TACTGGTGG-TTTGCCACATTTACTGT
1 TACTGGTGGCTCTGCCACAACTACTGT
72481341 TACTGGT
1 TACTGGT
72481348 AGCTTTGCTG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 21 0.70
27 9 0.30
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (27 bp):
TACTGGTGGCTCTGCCACAACTACTGT
Found at i:72485830 original size:119 final size:120
Alignment explanation
Indices: 72485648--72485863 Score: 278
Period size: 119 Copynumber: 1.8 Consensus size: 120
72485638 TTCTCGTTCA
* *
72485648 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
* *
72485713 TTAGTAAC-TCGCAAAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCAAAAA-GCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
* * **
72485768 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCACACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCGG
* * *
72485830 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
64 ATATAGTAACTTAGCAAAAAGCCTTCGGGACTTA
72485864 GCCCGGACAT
Statistics
Matches: 82, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 4 0.05
119 59 0.72
120 19 0.23
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAAAAAGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
Found at i:72485870 original size:40 final size:40
Alignment explanation
Indices: 72485646--72485870 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
72485636 GCTTCTCGTT
* *
72485646 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
72485686 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
72485726 AAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
72485766 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
72485805 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
72485846 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72485871 CATCATTCAA
Statistics
Matches: 158, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
38 2 0.01
39 29 0.18
40 116 0.73
41 11 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:72488423 original size:41 final size:41
Alignment explanation
Indices: 72488366--72488489 Score: 221
Period size: 41 Copynumber: 3.0 Consensus size: 41
72488356 GTCAGGGAAG
*
72488366 TAGAATTTGGTATTGATTTAATACCGGAAACAGCTCCGATC
1 TAGAATTTGGTATTGATTTAATACCGGGAACAGCTCCGATC
72488407 TAGAATTTGGTATTGATTTAATACCGGGAACAGCTCCGATC
1 TAGAATTTGGTATTGATTTAATACCGGGAACAGCTCCGATC
* *
72488448 TAGAATTTGGTATTGATTTAATACAGGGAACAGCTCTGATC
1 TAGAATTTGGTATTGATTTAATACCGGGAACAGCTCCGATC
72488489 T
1 T
72488490 CGATTGCTCT
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 80 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (41 bp):
TAGAATTTGGTATTGATTTAATACCGGGAACAGCTCCGATC
Found at i:72492616 original size:46 final size:46
Alignment explanation
Indices: 72492566--72492738 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
72492556 TGGTTGAGCA
* *
72492566 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
72492612 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
72492659 TCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
72492705 -CTCGACCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
72492739 GGGGTGGGTT
Statistics
Matches: 104, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 58 0.56
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:72492722 original size:93 final size:93
Alignment explanation
Indices: 72492563--72492733 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
72492553 GGATGGTTGA
*
72492563 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
72492628 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
72492656 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACG-CTCGACCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACGTC-CGAACTCGTTGAG
72492720 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
72492734 ACTTAGGGGT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72493000 original size:19 final size:20
Alignment explanation
Indices: 72492963--72493000 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
72492953 ATAAGGTGGT
72492963 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
72492983 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
72493001 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:72494866 original size:41 final size:42
Alignment explanation
Indices: 72494774--72494928 Score: 159
Period size: 43 Copynumber: 3.7 Consensus size: 42
72494764 TTGTACAATT
* * * * *
72494774 CCAACGTCCTAGACGTGGTCTTACATGGTATCACATATCGATG
1 CCAATGTCCCAGACATGGTCTTACA-CGAATCACATATCGATG
* ** *
72494817 CCACTGTCCCAGACAAAGTCTTACACGAATCAAATAT-GATG
1 CCAATGTCCCAGACATGGTCTTACACGAATCACATATCGATG
* *
72494858 CCAATGTCCCAGATATGGTCTTACACGTAATCACATATCAATG
1 CCAATGTCCCAGACATGGTCTTACACG-AATCACATATCGATG
** *
72494901 CCAACATCCTAGACATGGTCTTACACGA
1 CCAATGTCCCAGACATGGTCTTACACGA
72494929 GAAGACATAT
Statistics
Matches: 91, Mismatches: 19, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
41 27 0.30
42 19 0.21
43 45 0.49
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (42 bp):
CCAATGTCCCAGACATGGTCTTACACGAATCACATATCGATG
Found at i:72500720 original size:31 final size:31
Alignment explanation
Indices: 72500677--72500740 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
72500667 CCCTTTCATA
72500677 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
72500708 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
72500739 TT
1 TT
72500741 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:72500976 original size:25 final size:23
Alignment explanation
Indices: 72500935--72501028 Score: 109
Period size: 25 Copynumber: 3.9 Consensus size: 23
72500925 CTTTATCATC
*
72500935 TAACTGGAGGCCT-AGCCTCTTTTA
1 TAACTGG-GGCATAAGCC-CTTTTA
*
72500959 GTAACTGGGGCAAAAGCCCTTTTTA
1 -TAACTGGGGCATAAGCCC-TTTTA
72500984 TAACTGGGGCATAAGCCCTTTATCA
1 TAACTGGGGCATAAGCCCTTT-T-A
72501009 TAACTGGGGCATAAGCCCTT
1 TAACTGGGGCATAAGCCCTT
72501029 CATCGACATC
Statistics
Matches: 62, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 3 0.05
24 22 0.35
25 37 0.60
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (23 bp):
TAACTGGGGCATAAGCCCTTTTA
Found at i:72500987 original size:24 final size:24
Alignment explanation
Indices: 72500954--72501028 Score: 114
Period size: 25 Copynumber: 3.0 Consensus size: 24
72500944 GCCTAGCCTC
*
72500954 TTTTAGTAACTGGGGCAAAAGCCCT
1 TTTTA-TAACTGGGGCATAAGCCCT
72500979 TTTTATAACTGGGGCATAAGCCCT
1 TTTTATAACTGGGGCATAAGCCCT
*
72501003 TTATCATAACTGGGGCATAAGCCCT
1 TT-TTATAACTGGGGCATAAGCCCT
72501028 T
1 T
72501029 CATCGACATC
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
24 20 0.43
25 27 0.57
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (24 bp):
TTTTATAACTGGGGCATAAGCCCT
Found at i:72501194 original size:20 final size:20
Alignment explanation
Indices: 72501166--72501236 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
72501156 GCATTTATGA
*
72501166 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
72501186 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
72501206 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
72501226 AAATATCATGT
1 ACATATCATGT
72501237 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:72501201 original size:11 final size:11
Alignment explanation
Indices: 72501171--72501225 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
72501161 TATGAACATC
72501171 TCATGTGCATA
1 TCATGTGCATA
*
72501182 TCA--TACATA
1 TCATGTGCATA
72501191 TCATGTGCATA
1 TCATGTGCATA
* *
72501202 TCA--TACATG
1 TCATGTGCATA
72501211 TCATGTGCATA
1 TCATGTGCATA
72501222 TCAT
1 TCAT
72501226 AAATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:72501301 original size:25 final size:25
Alignment explanation
Indices: 72501273--72501320 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72501263 ATATATAAAC
* * *
72501273 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
72501298 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
72501321 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:72502539 original size:27 final size:27
Alignment explanation
Indices: 72502477--72502554 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
72502467 GGGCATATTC
72502477 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
72502504 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
72502531 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
72502555 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:72502625 original size:27 final size:27
Alignment explanation
Indices: 72502572--72502836 Score: 178
Period size: 27 Copynumber: 9.8 Consensus size: 27
72502562 TTTCATCCTA
* * * *
72502572 CAAGGGTGTTTCGGTAAATCTACAAAC
1 CAAGGGTATTTCAGTAATTTTACAAAC
**
72502599 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTACAAAC
* * *
72502626 CAATGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTTC-AGTAA-TTTTACAAA-C
* * ** *
72502655 CAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTACAAAC
* ** *
72502682 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTACAAAC
** *
72502709 TGAGGGTATTTC-GATAATTTCACAAAC
1 CAAGGGTATTTCAG-TAATTTTACAAAC
** *
72502736 C-AGTGGTATTTTGGTAATTTTACAAAT
1 CAAG-GGTATTTCAGTAATTTTACAAAC
** *
72502763 TGAGGGTATTTCTGTAATTTTACAAAC
1 CAAGGGTATTTCAGTAATTTTACAAAC
* *
72502790 CAAGGGTATTTTAGCAATTTTACAAA-
1 CAAGGGTATTTCAGTAATTTTACAAAC
* *
72502816 CTAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTCAGTAATTTT
72502837 GTAAATCGAA
Statistics
Matches: 188, Mismatches: 42, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
26 22 0.12
27 135 0.72
28 17 0.09
29 14 0.07
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTACAAAC
Found at i:72502744 original size:54 final size:54
Alignment explanation
Indices: 72502657--72502835 Score: 215
Period size: 54 Copynumber: 3.3 Consensus size: 54
72502647 TAGAAAGTCA
** * *
72502657 AGGGTATTTCTGTAACTTT-GTAAATCAGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCTGTAA-TTTCACAAACCAAGGGTATTTTGGTAATTTTACAAATTG
72502711 AGGGTATTTC-GATAATTTCACAAACC-AGTGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCTG-TAATTTCACAAACCAAG-GGTATTTTGGTAATTTTACAAATTG
* * * *
72502765 AGGGTATTTCTGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACT-
1 AGGGTATTTCTGTAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAAATTG
72502818 AGGGTATTT-TAGTAATTT
1 AGGGTATTTCT-GTAATTT
72502836 TGTAAATCGA
Statistics
Matches: 111, Mismatches: 8, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
52 1 0.01
53 21 0.19
54 86 0.77
55 3 0.03
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (54 bp):
AGGGTATTTCTGTAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAAATTG
Found at i:72502957 original size:27 final size:27
Alignment explanation
Indices: 72502829--72502958 Score: 161
Period size: 27 Copynumber: 4.8 Consensus size: 27
72502819 GGGTATTTTA
* * *
72502829 GTAATTTTGTAAATCGAAGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
72502856 GTAATTTTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
72502883 GTACTTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
72502910 GTAATTCTGTAAGTTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
72502937 GTAATTATGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
72502959 CTTTGGTAAT
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:72505434 original size:29 final size:28
Alignment explanation
Indices: 72505325--72505448 Score: 131
Period size: 29 Copynumber: 4.4 Consensus size: 28
72505315 AATTTCACAT
* * *
72505325 ACATGTATCTGGCCCATTAAGCCCAATC
1 ACATTTATATGGCCCATTAGGCCCAATC
* * *
72505353 ATATTCATATGGCCCATTAGGCCAAAATC
1 ACATTTATATGGCCCATTAGGCC-CAATC
* * *
72505382 ACCTGTATATGGCCTATTAGGCCCAAATC
1 ACATTTATATGGCCCATTAGGCCC-AATC
*
72505411 ACATTTATATGGCCCATTAGGCCCAGTC
1 ACATTTATATGGCCCATTAGGCCCAATC
*
72505439 ACATTCATAT
1 ACATTTATAT
72505449 TCATGCTCAC
Statistics
Matches: 77, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
28 30 0.39
29 47 0.61
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (28 bp):
ACATTTATATGGCCCATTAGGCCCAATC
Found at i:72505692 original size:24 final size:23
Alignment explanation
Indices: 72505665--72505710 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
72505655 AAACTTTCAA
72505665 CTTTTCGGCATTTCGGCTTTTTGG
1 CTTTTCGGCATTTCGG-TTTTTGG
* *
72505689 CTTTTCGGTATTTTGGTTTTTG
1 CTTTTCGGCATTTCGGTTTTTG
72505711 CCGATACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.04, C:0.15, G:0.24, T:0.57
Consensus pattern (23 bp):
CTTTTCGGCATTTCGGTTTTTGG
Found at i:72512751 original size:53 final size:53
Alignment explanation
Indices: 72512683--72512787 Score: 183
Period size: 53 Copynumber: 2.0 Consensus size: 53
72512673 AATTGACCCT
* *
72512683 AGTCAGGAAGTGGTTTCGGGACCTCTAAACCGAGTCGTAAAAATAATTAACCG
1 AGTCAGGAAGTGGTTTCGGGACCGCTAAACCGAGTCATAAAAATAATTAACCG
*
72512736 AGTCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCATAAAAATAATTAACC
1 AGTCAGGAAGTGGTTTCGGGACCGCTAAACCGAGTCATAAAAATAATTAACC
72512788 TTCATAATTG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (53 bp):
AGTCAGGAAGTGGTTTCGGGACCGCTAAACCGAGTCATAAAAATAATTAACCG
Found at i:72514059 original size:40 final size:40
Alignment explanation
Indices: 72514004--72514116 Score: 174
Period size: 40 Copynumber: 2.8 Consensus size: 40
72513994 NNNNNNNNNN
* *
72514004 TACTAAATCCGGGTTAAGTCCCGATGGCATTTGTGCGAGT
1 TACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAAT
72514044 TACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAAT
1 TACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAAT
* *
72514084 TACTATAA-CCGGGCTATGTCCCGAAGGCATTTG
1 TACTA-AATCCGGGTTAAGTCCCGAAGGCATTTG
72514117 AACGAGGAGC
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
40 66 0.97
41 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
TACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAAT
Found at i:72522177 original size:40 final size:40
Alignment explanation
Indices: 72521859--72522163 Score: 438
Period size: 40 Copynumber: 7.7 Consensus size: 40
72521849 TTGAATGATG
* * * * *
72521859 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
72521899 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72521939 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
72521978 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
72522018 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
72522058 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72522098 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
72522139 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
72522164 AACGAGTAGC
Statistics
Matches: 246, Mismatches: 14, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
39 35 0.14
40 201 0.82
41 10 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72524386 original size:30 final size:30
Alignment explanation
Indices: 72524342--72524430 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
72524332 CAAAGATAAC
72524342 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
72524371 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
72524401 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
72524431 CGATATTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:72524390 original size:15 final size:15
Alignment explanation
Indices: 72524342--72524421 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
72524332 CAAAGATAAC
*
72524342 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
72524356 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
72524371 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
72524386 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
72524401 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
72524416 AAGAAA
1 AAGAAA
72524422 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:72524430 original size:15 final size:15
Alignment explanation
Indices: 72524353--72524430 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
72524343 AGAAAACCGA
72524353 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
72524368 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
72524382 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
72524397 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
72524413 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
72524428 ATA
1 ATA
72524431 CGATATTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:72528644 original size:40 final size:39
Alignment explanation
Indices: 72528599--72528822 Score: 204
Period size: 40 Copynumber: 5.6 Consensus size: 39
72528589 CTTGCGCAAG
* *
72528599 GCCTTCGGGTCTTAGCCCGGATGTGGTCATTAGC-CTAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-TTAGCAC-AAAT
*
72528639 GCCTTCGGGACTTAGCCCGGATATAGT-TGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCT--TAGCACAAAT
* *
72528679 GCCTTCGGGTTTTAGCCCGGATATAATCTCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCT-TAGCACAAAT
* * *
72528719 GCCTTCGGGTCTTAGCCCGGATATAGTAAC-TCGTACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGT--CTTAGCACAAAT
* * * * *
72528759 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGT--CTTAGCACAAAT
**
72528800 GCCTTC-GAACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
72528823 CATTCGAATA
Statistics
Matches: 155, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
38 1 0.01
40 139 0.90
41 14 0.09
42 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (39 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCTTAGCACAAAT
Found at i:72528687 original size:80 final size:80
Alignment explanation
Indices: 72528599--72528822 Score: 256
Period size: 80 Copynumber: 2.8 Consensus size: 80
72528589 CTTGCGCAAG
* *
72528599 GCCTTCGGGTCTTAGCCCGGATGTGGTCATTAGC-CTAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCATTAGCAC-AAATGCCTTCGGGACTTAGCCCGGATAT
**
72528663 AGTTGCTAGCACAAAT
65 AGTAACTAGCACAAAT
* * *
72528679 GCCTTCGGGTTTTAGCCCGGATATAATC-TCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCAT-TAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
* * *
72528743 AGTAACTCGTACGAAT
65 AGTAACTAGCACAAAT
* * * * * *
72528759 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGCCTTC-GAACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-TTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
72528823 CATTCGAATA
Statistics
Matches: 121, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
79 1 0.01
80 104 0.86
81 16 0.13
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (80 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCATTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
GTAACTAGCACAAAT
Found at i:72538694 original size:42 final size:43
Alignment explanation
Indices: 72538639--72538731 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 43
72538629 GTTTTACGTA
** * *
72538639 TAAGACCACATCTGGGAC-GTTGGTGTC-ATATTTGATTTCGTG
1 TAAGACCACATCTGGGACAG-TGGCATCGATATTTGATTACATG
72538681 TAAGACC-CTATCTGGGACAGTGGCATCGATATTTGATTACATG
1 TAAGACCAC-ATCTGGGACAGTGGCATCGATATTTGATTACATG
72538724 TAAGACCA
1 TAAGACCA
72538732 TGCTTGGGAC
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
41 1 0.02
42 21 0.49
43 21 0.49
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
TAAGACCACATCTGGGACAGTGGCATCGATATTTGATTACATG
Found at i:72542138 original size:47 final size:46
Alignment explanation
Indices: 72541937--72542156 Score: 150
Period size: 46 Copynumber: 4.7 Consensus size: 46
72541927 GTAAGGTACC
* * * *
72541937 GATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCATATCTCAAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATATC-GATGCT
* * * * *
72541984 GATGCATGTCCCTA-ACATGTCTTATC-TTGGCT-TGCGTCTCGA-GGT
1 GATGCATGTCCC-AGACATGTCTTA-CACTAGCTCT-CATATCGATGCT
** * *
72542029 CGATGCATGTCCTGGACATGTCTTACACTAGCACTCATCTCGATGCT
1 -GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCGATGCT
* *
72542076 GATGCCATTTCCCAGACATGGTCTTACACTGGCTCTCATAAT-G-TAGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-ATCGAT-GCT
72542124 GATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTC
72542157 ATAATAACCC
Statistics
Matches: 137, Mismatches: 22, Indels: 29
0.73 0.12 0.15
Matches are distributed among these distances:
45 9 0.07
46 65 0.47
47 37 0.27
48 25 0.18
49 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.20, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCGATGCT
Found at i:72547942 original size:56 final size:56
Alignment explanation
Indices: 72547868--72548157 Score: 463
Period size: 56 Copynumber: 5.2 Consensus size: 56
72547858 TTGTGATCAT
72547868 GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTGC
1 GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTGC
* * * * *
72547924 AAGTAAAACCATGTTTAATACATTGGCATCGATATGTGATTTTGATATATGTGTGC
1 GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTGC
* *
72547980 GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGCTTCTGATATATGTGTGT
1 GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTGC
* * *
72548036 GAGTAAGACCACGTTTAAAACGTTGGCATCGATATGTGATTCTAATATATATGTGC
1 GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTGC
* *
72548092 GAGTAAGACCACGTTTAATACATTGGCATAGATATGTGATTCTGATATATGTGTGC
1 GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTGC
*
72548148 GAGCAAGACC
1 GAGTAAGACC
72548158 CTATTTGGGA
Statistics
Matches: 211, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 211 1.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (56 bp):
GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTGC
Found at i:72550941 original size:49 final size:49
Alignment explanation
Indices: 72550881--72551576 Score: 1077
Period size: 47 Copynumber: 14.6 Consensus size: 49
72550871 GATAATTGTG
*
72550881 ATGTG-AA-TGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
72550928 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
72550977 ATATGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
72551026 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
72551073 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
72551122 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
72551169 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
72551218 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
72551265 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
72551314 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
72551363 ATGTAAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
72551410 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
72551457 ATGTGAAAGTGTATATAT-T-TGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * * *
72551504 ATGTGAAAGTG--TATATCTGTCACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
72551551 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
72551577 TCCCGAAGGG
Statistics
Matches: 602, Mismatches: 33, Indels: 28
0.91 0.05 0.04
Matches are distributed among these distances:
45 5 0.01
46 1 0.00
47 305 0.51
48 4 0.01
49 287 0.48
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:72551068 original size:96 final size:96
Alignment explanation
Indices: 72550881--72551576 Score: 1129
Period size: 96 Copynumber: 7.3 Consensus size: 96
72550871 GATAATTGTG
*
72550881 ATGTG-AA-TGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
* *
72550944 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCGAATGGCCAATGTGATGA
*
72550977 ATATGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
72551042 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
72551073 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
72551138 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
72551169 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
72551234 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
72551265 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
* *
72551330 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
72551363 ATGTAAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
72551426 ATGTGATGAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
*
72551457 ATGTGAAAGTGTATATAT-T-TGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * *
72551520 CTGTCACAGGGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAGGCCGAATGGCCAATGTGATGA
72551551 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
72551577 TCCCGAAGGG
Statistics
Matches: 568, Mismatches: 24, Indels: 18
0.93 0.04 0.03
Matches are distributed among these distances:
93 2 0.00
94 129 0.23
95 1 0.00
96 340 0.60
97 2 0.00
98 94 0.17
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:72553495 original size:31 final size:32
Alignment explanation
Indices: 72553451--72553510 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
72553441 ATGCGAAAAT
* *
72553451 GGCTTGTTTATTTTG-TTAAGTTCGGTTACAA
1 GGCTTGATCATTTTGCTTAAGTTCGGTTACAA
*
72553482 GGCTTGATCATTTTGCTTATGTTCGGTTA
1 GGCTTGATCATTTTGCTTAAGTTCGGTTA
72553511 TATTTGACCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 13 0.52
32 12 0.48
ACGTcount: A:0.17, C:0.12, G:0.23, T:0.48
Consensus pattern (32 bp):
GGCTTGATCATTTTGCTTAAGTTCGGTTACAA
Found at i:72568000 original size:146 final size:146
Alignment explanation
Indices: 72567736--72568014 Score: 391
Period size: 146 Copynumber: 1.9 Consensus size: 146
72567726 TGTGAATTGG
* * * * * *
72567736 TCAACTATTACCCACACTGAATCTGCCTTTGTCGGAGTCGAGGGCAAACCTGAAACAAAGTCCAT
1 TCAACTATTACCCACACTGAATCTGCCTTTGTCAGAGTCAAAGACAAACCTAAAACAAAGTACAT
* * *
72567801 AGTGCTCCTTTCCCACTTCCATTTAGGAATTGGAATCGGTTGCAACAAACTTGAAGGAAACAAAT
66 AGTGATCCTTTCCCACTTCCATTTAGGAATTGAAATCGATTGCAACAAACTTGAAGGAAACAAAT
72567866 GTTTTTTGAGAATCGA
131 GTTTTTTGAGAATCGA
* * * *
72567882 TCAACTATTACCCACATTGAATCTGTCTTTTTCAGAGTCAAAGATAAA-CTCAAAACAAAGTACA
1 TCAACTATTACCCACACTGAATCTGCCTTTGTCAGAGTCAAAGACAAACCT-AAAACAAAGTACA
* *
72567946 TAGTGATCTTTTCCCTA-TTCCATTTAGGAATTGAAATCGATTGCAACAAACTTGAAGGAAACAG
65 TAGTGATCCTTTCCC-ACTTCCATTTAGGAATTGAAATCGATTGCAACAAACTTGAAGGAAACAA
72568010 ATGTT
129 ATGTT
72568015 ATGCCTTTAC
Statistics
Matches: 116, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
145 2 0.02
146 113 0.97
147 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (146 bp):
TCAACTATTACCCACACTGAATCTGCCTTTGTCAGAGTCAAAGACAAACCTAAAACAAAGTACAT
AGTGATCCTTTCCCACTTCCATTTAGGAATTGAAATCGATTGCAACAAACTTGAAGGAAACAAAT
GTTTTTTGAGAATCGA
Found at i:72571800 original size:28 final size:29
Alignment explanation
Indices: 72571769--72571829 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
72571759 GTGAGCATGA
*
72571769 ATAT-AAGGTGATTTGGGCCTAACATGCC
1 ATATAAAGGTGATTTGGGCCTAACAGGCC
*
72571797 ATATAAAGGTGATTTGGGCCTAATAGGCC
1 ATATAAAGGTGATTTGGGCCTAACAGGCC
72571826 ATAT
1 ATAT
72571830 GAATATGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 4 0.13
29 26 0.87
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (29 bp):
ATATAAAGGTGATTTGGGCCTAACAGGCC
Found at i:72571842 original size:29 final size:29
Alignment explanation
Indices: 72571781--72571861 Score: 90
Period size: 29 Copynumber: 2.8 Consensus size: 29
72571771 ATAAGGTGAT
* * * * *
72571781 TTGGGCCTAACATGCCATATAAAGGTGAT
1 TTGGGCCTAATAGGCCATATGAAGATGAA
*
72571810 TTGGGCCTAATAGGCCATATGAATATGAA
1 TTGGGCCTAATAGGCCATATGAAGATGAA
* *
72571839 TTGGGCCTGATGGGCCATATGAA
1 TTGGGCCTAATAGGCCATATGAA
72571862 CGAGATGGAC
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (29 bp):
TTGGGCCTAATAGGCCATATGAAGATGAA
Found at i:72572869 original size:15 final size:15
Alignment explanation
Indices: 72572831--72572869 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
72572821 CCTCAACTAA
72572831 ATTTTTAAGTGACAT
1 ATTTTTAAGTGACAT
*
72572846 ATTTCTAAGTGACAT
1 ATTTTTAAGTGACAT
*
72572861 GTTTTTAAG
1 ATTTTTAAG
72572870 GAGCCTTGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (15 bp):
ATTTTTAAGTGACAT
Found at i:72574231 original size:29 final size:28
Alignment explanation
Indices: 72574179--72574271 Score: 125
Period size: 29 Copynumber: 3.3 Consensus size: 28
72574169 ATTGCATGAC
72574179 TATGAATGTGATTGGGCCTAATGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
*
72574207 TATGAATGTGATTTGGGCCTAATGGGACA
1 TATGAATGTGA-TTGGGCCTAATGGGCCA
* * *
72574236 TATGAAAGAGATT-GGCCTAGTGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
*
72574263 TATGCATGT
1 TATGAATGT
72574272 ATGTAGACTT
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
27 18 0.32
28 13 0.23
29 25 0.45
ACGTcount: A:0.27, C:0.13, G:0.31, T:0.29
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTAATGGGCCA
Found at i:72575497 original size:17 final size:18
Alignment explanation
Indices: 72575464--72575497 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72575454 TTTAAAGAAG
72575464 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
72575482 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
72575498 CTTCAATATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:72579871 original size:10 final size:10
Alignment explanation
Indices: 72579856--72579905 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
72579846 TAATTTTAGG
72579856 ATTTAT-TTT
1 ATTTATCTTT
72579865 CATTTATCTTT
1 -ATTTATCTTT
*
72579876 AATTATCTTT
1 ATTTATCTTT
72579886 ATTTAT-TTGT
1 ATTTATCTT-T
*
72579896 ATTTACCTTT
1 ATTTATCTTT
72579906 TAGAATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 2 0.06
10 27 0.79
11 5 0.15
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:72580646 original size:43 final size:37
Alignment explanation
Indices: 72580614--72580685 Score: 117
Period size: 38 Copynumber: 1.9 Consensus size: 37
72580604 TGAAATCCCA
*
72580614 ATCAAAACTTTTAATTCTATTTTATTTTATTCTTTCAG
1 ATCAAAACTTTTAATTCTATTTT-TTTAATTCTTTCAG
*
72580652 ATCAAAACTTTTAATTCTATTTTTTTATTTCTTT
1 ATCAAAACTTTTAATTCTATTTTTTTAATTCTTT
72580686 TCGAGGTATG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
37 9 0.28
38 23 0.72
ACGTcount: A:0.28, C:0.12, G:0.01, T:0.58
Consensus pattern (37 bp):
ATCAAAACTTTTAATTCTATTTTTTTAATTCTTTCAG
Found at i:72583289 original size:29 final size:28
Alignment explanation
Indices: 72583255--72583313 Score: 91
Period size: 29 Copynumber: 2.1 Consensus size: 28
72583245 TCTACCACTC
*
72583255 TTCCCTAAACCACTTCCTTACTATTATT
1 TTCCCTAAACCACATCCTTACTATTATT
*
72583283 TNTCCCTACACCACATCCTTACTATTATT
1 T-TCCCTAAACCACATCCTTACTATTATT
72583312 TT
1 TT
72583314 TAAGCCTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 2 0.07
29 26 0.93
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.42
Consensus pattern (28 bp):
TTCCCTAAACCACATCCTTACTATTATT
Found at i:72585499 original size:40 final size:38
Alignment explanation
Indices: 72585462--72585677 Score: 191
Period size: 40 Copynumber: 5.4 Consensus size: 38
72585452 ATATCCGGAC
*
72585462 TAAGATCCGAAGGCATTTGTGCGAGATACAAATTCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGATACAAA-TCCGGGT
* * *
72585502 TAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGATAC-AAATCCGGGT
* *
72585542 TAAGTCTCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGTC-CGAAGGCATTCGTGCGAGATA-CAAATCCGGGT
* **
72585582 TAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGT
1 TAAGT-CCGAAGGCATTCGTGCGAGAT-ACAAATCCGGGT
* * * * *
72585622 TATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGC
1 TAAGT-CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGT
*
72585661 TATGTCCCGAAGGCATT
1 TAAGT-CCGAAGGCATT
72585678 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
39 34 0.22
40 117 0.75
41 4 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (38 bp):
TAAGTCCGAAGGCATTCGTGCGAGATACAAATCCGGGT
Found at i:72585553 original size:80 final size:80
Alignment explanation
Indices: 72585468--72585677 Score: 228
Period size: 80 Copynumber: 2.6 Consensus size: 80
72585458 GGACTAAGAT
* *
72585468 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACT
72585532 AAATCCGGGTTAAGTC
65 AAATCCGGGTTAAGTC
* * * * * * **
72585548 TCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTA
*
72585613 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * * * * *
72585628 CCGAAGGCA-TTGTGTGAGTTA-CTAAAACCGGGCTATGTCCCGAAGGCATT
1 CCGAAGGCATTTGTGCGAGATATC-AAATCCGGGTTAAGCCCCGAAGGCATT
72585678 TGAACGAGGA
Statistics
Matches: 110, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
79 34 0.31
80 73 0.66
81 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTA
AATCCGGGTTAAGTC
Found at i:72585697 original size:79 final size:80
Alignment explanation
Indices: 72585468--72585712 Score: 210
Period size: 80 Copynumber: 3.1 Consensus size: 80
72585458 GGACTAAGAT
* * * * * * * ** *
72585468 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGA-GATAC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGA-GC
72585531 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* * * * ** ** *
72585548 TCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
72585613 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
72585628 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
72585692 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
*
72585706 CAGAAGG
1 CCGAAGG
72585713 TACGTGATTT
Statistics
Matches: 135, Mismatches: 28, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
78 13 0.10
79 46 0.34
80 73 0.54
81 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:72587778 original size:81 final size:81
Alignment explanation
Indices: 72587643--72587798 Score: 285
Period size: 81 Copynumber: 1.9 Consensus size: 81
72587633 TGGGAAACTG
* *
72587643 ATGGAGGAAGTACTGAAAGTGGCTTGTCCACGTATTGGAGGCTTTGCCTCAACTTACTGATAACT
1 ATGGAGGAAGTACTGAAAGTGGCTTGTCCAAGTACTGGAGGCTTTGCCTCAACTTACTGATAACT
72587708 GAACAGCAATACTGCA
66 GAACAGCAATACTGCA
72587724 ATGGAGGAAGTACTGAAAGTGGCTTGTCCAAGTACTGGAGGCTTTGCCTCAACTTACTGATAACT
1 ATGGAGGAAGTACTGAAAGTGGCTTGTCCAAGTACTGGAGGCTTTGCCTCAACTTACTGATAACT
*
72587789 GAGCAGCAAT
66 GAACAGCAAT
72587799 GTTGTAACTG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 72 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (81 bp):
ATGGAGGAAGTACTGAAAGTGGCTTGTCCAAGTACTGGAGGCTTTGCCTCAACTTACTGATAACT
GAACAGCAATACTGCA
Found at i:72592676 original size:19 final size:18
Alignment explanation
Indices: 72592652--72592687 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
72592642 AACCCAATTT
72592652 TTATTTATTATTATTATTA
1 TTATTTATTATT-TTATTA
72592671 TTATTTATTATTTTATT
1 TTATTTATTATTTTATT
72592688 TTTTGGATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
TTATTTATTATTTTATTA
Found at i:72593975 original size:96 final size:97
Alignment explanation
Indices: 72593809--72593988 Score: 285
Period size: 96 Copynumber: 1.9 Consensus size: 97
72593799 TAAGAATGTA
*
72593809 TTGGGCTGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCGTGTCAAAAGGTTCGATAT
1 TTGGGCTGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCGTGTCAAAAGGTTCAATAT
*
72593874 GTTCTTAAG-AAAAATAAAAATTAGGAGTATG
66 ATTCTTAAGCAAAAATAAAAATTAGGAGTATG
*
72593905 TTGGGCTGAGTAACCGGGGTG-GAGTGCTTGGCTGTCATCTCTTTTCGCT-TCAAAAGGTTCAAT
1 TTGGGCTGAGTAACCGGGGTGAG-GTGCTTGGCTGTCATCTCTCTTCG-TGTCAAAAGGTTCAAT
*
72593968 ATATTCTTAAGCAACAATAAA
64 ATATTCTTAAGCAAAAATAAA
72593989 TAAATAAATA
Statistics
Matches: 77, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
95 1 0.01
96 67 0.87
97 9 0.12
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (97 bp):
TTGGGCTGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCGTGTCAAAAGGTTCAATAT
ATTCTTAAGCAAAAATAAAAATTAGGAGTATG
Found at i:72595665 original size:64 final size:68
Alignment explanation
Indices: 72595556--72595732 Score: 195
Period size: 67 Copynumber: 2.6 Consensus size: 68
72595546 CATCATGTGT
** * * *
72595556 ACAAGAGAGCTACGAGATACTATGTGGTAGCTAGGTCACATGTGT-GATAC-GG-GATGTATACC
1 ACAAGAGAGCTACGAGATA--AAAT-GTAGCTAGGTCACATGTGTGGATACAGGTGAAGGACACC
72595618 ATGTAG
63 ATGTAG
* * * *
72595624 ACAAGAGAGCTACGGGAT-AAATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGACACCATG
1 ACAAGAGAGCTACGAGATAAAATGTAGCTAGGTCACATGTGTGGATACAGGTGAAGGACACCATG
72595688 TAG
66 TAG
*
72595691 ACAAGAGAGCTACGAGATAAAATG--GCTAGGTCACATGGGTGG
1 ACAAGAGAGCTACGAGATAAAATGTAGCTAGGTCACATGTGTGG
72595733 TACTAAGTGT
Statistics
Matches: 93, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
64 18 0.19
65 5 0.05
66 18 0.19
67 30 0.32
68 22 0.24
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.21
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGATAAAATGTAGCTAGGTCACATGTGTGGATACAGGTGAAGGACACCATG
TAG
Found at i:72603656 original size:40 final size:39
Alignment explanation
Indices: 72603625--72603700 Score: 93
Period size: 39 Copynumber: 2.0 Consensus size: 39
72603615 TTAATTTTCA
*
72603625 AAATCTC-A-ATCAAAACTTTTAATTCTGTTTTTATTAT
1 AAATCTCTAGATCAAAACTTTTAATTCTGTTTTTATTTT
** *
72603662 ATTTTTCTAGATCAAAACTTTTAATTCTGTTTTTTATTT
1 AAATCTCTAGATCAAAACTTTTAATTCTG-TTTTTATTT
72603701 CTTTTCCAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
37 4 0.12
38 1 0.03
39 19 0.59
40 8 0.25
ACGTcount: A:0.30, C:0.12, G:0.04, T:0.54
Consensus pattern (39 bp):
AAATCTCTAGATCAAAACTTTTAATTCTGTTTTTATTTT
Found at i:72606071 original size:48 final size:48
Alignment explanation
Indices: 72605926--72606159 Score: 237
Period size: 48 Copynumber: 5.0 Consensus size: 48
72605916 AACATAGTAA
*
72605926 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACAAATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACACATC
* * * * * * ** *
72605974 GAAG-C--TG--ATAGCCCAGCTATGGTCTTACACGATG-TCTCATGTT
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATG-GGATCACACATC
*
72606017 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACACGTC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACACATC
* * * * * *
72606065 GGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATACC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACACATC
* * *
72606113 AATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACAT
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACACAT
72606160 AACCCTAATG
Statistics
Matches: 150, Mismatches: 29, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
43 29 0.19
44 2 0.01
45 2 0.01
46 2 0.01
47 2 0.01
48 113 0.75
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACACATC
Found at i:72607673 original size:32 final size:32
Alignment explanation
Indices: 72607632--72607698 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
72607622 AGCCATTCTA
72607632 ATGGTTAGATTATAAGCATCATTTACATTTAC
1 ATGGTTAGATTATAAGCATCATTTACATTTAC
72607664 ATGGTTAGATTATAAGCATCATTTACATTTAC
1 ATGGTTAGATTATAAGCATCATTTACATTTAC
72607696 ATG
1 ATG
72607699 CCAATATATC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (32 bp):
ATGGTTAGATTATAAGCATCATTTACATTTAC
Found at i:72607853 original size:16 final size:17
Alignment explanation
Indices: 72607832--72607864 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
72607822 AAATAGGGAA
72607832 ATAAAA-CTTAGTAAGC
1 ATAAAATCTTAGTAAGC
72607848 ATAAAATTCTTAGTAAG
1 ATAAAA-TCTTAGTAAG
72607865 TTCGTATAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.09, G:0.12, T:0.30
Consensus pattern (17 bp):
ATAAAATCTTAGTAAGC
Found at i:72609184 original size:17 final size:19
Alignment explanation
Indices: 72609164--72609201 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
72609154 CAGGGGAAGG
72609164 AAGAAAG-A-AAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
72609181 AAGAAAGAAGAAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
72609200 AA
1 AA
72609202 TTAAAGGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 1 0.05
19 11 0.58
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (19 bp):
AAGAAAGAAGAAAAGAGAA
Found at i:72609945 original size:14 final size:14
Alignment explanation
Indices: 72609926--72609953 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
72609916 TATATTGCAT
72609926 TTGATGATATTTTA
1 TTGATGATATTTTA
72609940 TTGATGATATTTTA
1 TTGATGATATTTTA
72609954 GTTTATTCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (14 bp):
TTGATGATATTTTA
Found at i:72613991 original size:28 final size:28
Alignment explanation
Indices: 72613932--72614027 Score: 122
Period size: 28 Copynumber: 3.4 Consensus size: 28
72613922 TGAGATTGGT
* * *
72613932 ACTAAGTGTGCGGGTTTAAATTGTACAGC
1 ACTAAGTGTGCGAGTTT-GATTGTATAGC
72613961 ACTAAGTGTGCGAGTTTGATTGTATAGC
1 ACTAAGTGTGCGAGTTTGATTGTATAGC
*
72613989 ACTAAGTGTGCGAG-TTGATTATATAGC
1 ACTAAGTGTGCGAGTTTGATTGTATAGC
* *
72614016 ATTGAGTGTGCG
1 ACTAAGTGTGCG
72614028 GACTTAATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 22 0.36
28 23 0.38
29 16 0.26
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.33
Consensus pattern (28 bp):
ACTAAGTGTGCGAGTTTGATTGTATAGC
Found at i:72616606 original size:28 final size:28
Alignment explanation
Indices: 72616566--72616630 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
72616556 ATGTACTAGA
*
72616566 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
72616594 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
72616622 ATACCCCTA
1 ATACCCCTA
72616631 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:72616837 original size:29 final size:28
Alignment explanation
Indices: 72616736--72616826 Score: 130
Period size: 28 Copynumber: 3.2 Consensus size: 28
72616726 AGGAAGCGTC
*
72616736 CTGGTGGCTA-TGCTACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
72616764 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
72616792 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
72616821 CTGGTG
1 CTGGTG
72616827 ACTCTGTCAC
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
28 50 0.88
29 7 0.12
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:72616851 original size:56 final size:55
Alignment explanation
Indices: 72616736--72616851 Score: 128
Period size: 56 Copynumber: 2.1 Consensus size: 55
72616726 AGGAAGCGTC
* * *
72616736 CTGGTGGCTATGCTACAAATTATCTGTTCTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCAC-AATTATCTGTT
* * *
72616792 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACAATTATCTGT-T
72616848 CTGG
1 CTGG
72616852 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
55 9 0.18
56 28 0.55
57 14 0.27
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACAATTATCTGTT
Found at i:72624216 original size:16 final size:15
Alignment explanation
Indices: 72624190--72624219 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
72624180 GCTAGATTAG
72624190 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
72624205 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
72624220 TCGGTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.23, G:0.20, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:72624511 original size:28 final size:28
Alignment explanation
Indices: 72624471--72624535 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
72624461 ATGTACTAGA
*
72624471 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
72624499 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
72624527 ATACCCCTA
1 ATACCCCTA
72624536 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:72624742 original size:29 final size:28
Alignment explanation
Indices: 72624641--72624731 Score: 130
Period size: 28 Copynumber: 3.2 Consensus size: 28
72624631 AGGAAGCGTC
*
72624641 CTGGTGGCTA-TGCTACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
72624669 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
72624697 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
72624726 CTGGTG
1 CTGGTG
72624732 ACTCTGTCAC
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
28 50 0.88
29 7 0.12
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:72624756 original size:56 final size:55
Alignment explanation
Indices: 72624641--72624756 Score: 128
Period size: 56 Copynumber: 2.1 Consensus size: 55
72624631 AGGAAGCGTC
* * *
72624641 CTGGTGGCTATGCTACAAATTATCTGTTCTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCAC-AATTATCTGTT
* * *
72624697 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACAATTATCTGT-T
72624753 CTGG
1 CTGG
72624757 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
55 9 0.18
56 28 0.55
57 14 0.27
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACAATTATCTGTT
Found at i:72625178 original size:87 final size:87
Alignment explanation
Indices: 72625032--72625204 Score: 337
Period size: 87 Copynumber: 2.0 Consensus size: 87
72625022 TCACCCCTTT
*
72625032 TTTTCATTCTCGCAGGTAATCATCGACCATAGTGGGCTTGGAGCTGCGAGGGATTCGGACTGGCC
1 TTTTCATCCTCGCAGGTAATCATCGACCATAGTGGGCTTGGAGCTGCGAGGGATTCGGACTGGCC
72625097 ACATATTTTTACGAGCCTGGTA
66 ACATATTTTTACGAGCCTGGTA
72625119 TTTTCATCCTCGCAGGTAATCATCGACCATAGTGGGCTTGGAGCTGCGAGGGATTCGGACTGGCC
1 TTTTCATCCTCGCAGGTAATCATCGACCATAGTGGGCTTGGAGCTGCGAGGGATTCGGACTGGCC
72625184 ACATATTTTTACGAGCCTGGT
66 ACATATTTTTACGAGCCTGGT
72625205 TTCTTTTTAG
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 85 1.00
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (87 bp):
TTTTCATCCTCGCAGGTAATCATCGACCATAGTGGGCTTGGAGCTGCGAGGGATTCGGACTGGCC
ACATATTTTTACGAGCCTGGTA
Found at i:72627908 original size:90 final size:89
Alignment explanation
Indices: 72627645--72627918 Score: 295
Period size: 90 Copynumber: 3.0 Consensus size: 89
72627635 AACCACAAAA
* * * * * *
72627645 GTTGCAAGTTAATATGTTAGCAGATGGTTGTGAATGCACAACATATTTGCAGATGAGAA-CTACC
1 GTTGCAGGTTAATACGCTAGCAGATGGTTGTGAATACACAACATATTTGCAAATGA-AAGCTTCC
*
72627709 AGAATGTGGGTGGATGAACCACCAGT
65 AGAA-ATGGGTGGATGAACCACCAGT
* * * *
72627735 GTTGCAGGTGAATACACTACCAGATGGTTTTGAATACACAACATATTTGCAGATATG--AG-TTG
1 GTTGCAGGTTAATACGCTAGCAGATGGTTGTGAATACACAACATATTTGCA-A-ATGAAAGCTT-
* * *
72627797 CCAAAAAAGGGGTGGAGGAACCACCAGT
63 CC-AGAAATGGGTGGATGAACCACCAGT
72627825 GTTGCAGGTTAATACGCTAGCAGATGGTTGTGAATACACAACATATTTGCAAATGAAAGCTTCCA
1 GTTGCAGGTTAATACGCTAGCAGATGGTTGTGAATACACAACATATTTGCAAATGAAAGCTTCCA
*** *
72627890 GATAATCCATGGATGAACCACCAGA
66 GA-AATGGGTGGATGAACCACCAGT
72627915 GTTG
1 GTTG
72627919 GAAATTATTA
Statistics
Matches: 150, Mismatches: 25, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
88 3 0.02
89 5 0.03
90 134 0.89
91 5 0.03
92 3 0.02
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (89 bp):
GTTGCAGGTTAATACGCTAGCAGATGGTTGTGAATACACAACATATTTGCAAATGAAAGCTTCCA
GAAATGGGTGGATGAACCACCAGT
Found at i:72628643 original size:21 final size:20
Alignment explanation
Indices: 72628606--72628647 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
72628596 GGTTGATTTC
72628606 AAGATTTGACAAAATTTATAA
1 AAGATTTGACAAAATTT-TAA
*
72628627 AAGATTT-ATCAAGATTTTAA
1 AAGATTTGA-CAAAATTTTAA
72628647 A
1 A
72628648 TGGATCGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.50, C:0.05, G:0.10, T:0.36
Consensus pattern (20 bp):
AAGATTTGACAAAATTTTAA
Found at i:72639325 original size:30 final size:29
Alignment explanation
Indices: 72639291--72639354 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
72639281 ATGAATCGGA
* *
72639291 AGCTTTGGTATTAAGTGTGCGATTTAAACT
1 AGCTTTGGTACTAAGTATGCGATTT-AACT
72639321 AGCTTTGGTACTAAGTATGCGATTTAACT
1 AGCTTTGGTACTAAGTATGCGATTTAACT
72639350 AGCTT
1 AGCTT
72639355 CGGCTACTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.28
30 23 0.72
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (29 bp):
AGCTTTGGTACTAAGTATGCGATTTAACT
Found at i:72639648 original size:15 final size:15
Alignment explanation
Indices: 72639628--72639657 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
72639618 TATATGGATT
72639628 GAAATTGTGCAAATA
1 GAAATTGTGCAAATA
72639643 GAAATTGTGCAAATA
1 GAAATTGTGCAAATA
72639658 CTCATAGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.27
Consensus pattern (15 bp):
GAAATTGTGCAAATA
Found at i:72649740 original size:79 final size:82
Alignment explanation
Indices: 72649629--72649813 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
72649619 GCTACTCGTT
* *
72649629 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
72649692 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
72649709 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
72649772 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
72649789 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72649814 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:72649813 original size:40 final size:40
Alignment explanation
Indices: 72649610--72649813 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
72649600 CGGAATTTAA
** *
72649610 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
72649650 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
72649690 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
72649729 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
72649769 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
72649809 CCGGA
1 CCGGA
72649814 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:72654513 original size:6 final size:6
Alignment explanation
Indices: 72654495--72654600 Score: 119
Period size: 6 Copynumber: 17.3 Consensus size: 6
72654485 AAGAAACATT
72654495 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
72654542 GTGACAGA ATCAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
72654593 ATCAGA AT
1 ATCAGA AT
72654601 GTGAATGCAA
Statistics
Matches: 86, Mismatches: 6, Indels: 16
0.80 0.06 0.15
Matches are distributed among these distances:
5 4 0.05
6 73 0.85
7 7 0.08
8 2 0.02
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:72654556 original size:37 final size:37
Alignment explanation
Indices: 72654509--72654600 Score: 157
Period size: 37 Copynumber: 2.5 Consensus size: 37
72654499 GAACTAGAAT
*
72654509 CAGAATCAGAATCAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
*
72654546 CAGAATCAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
*
72654583 CAGAATCAAAATCAGAAT
1 CAGAATCAGAATCAGAAT
72654601 GTGAATGCAA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 52 1.00
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.17
Consensus pattern (37 bp):
CAGAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:72654779 original size:27 final size:26
Alignment explanation
Indices: 72654718--72654837 Score: 150
Period size: 27 Copynumber: 4.5 Consensus size: 26
72654708 CAGCATGGCT
** *
72654718 ACCAGAACAGATAATGTGATAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
*
72654744 ACCAAAACAGATAATCGTGGCAGAGCC
1 ACCAGAACAGATAAT-GTGGCAGAGCC
72654771 ACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* *
72654798 ACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGATAA-TGTGGCAGAGCC
*
72654825 ACCAGGACAGATA
1 ACCAGAACAGATA
72654838 TATATATATG
Statistics
Matches: 82, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
26 15 0.18
27 65 0.79
28 2 0.02
ACGTcount: A:0.39, C:0.22, G:0.23, T:0.16
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:72654809 original size:54 final size:54
Alignment explanation
Indices: 72654718--72654840 Score: 167
Period size: 54 Copynumber: 2.3 Consensus size: 54
72654708 CAGCATGGCT
* *
72654718 ACCAGAACAGATA-ATGTGATAGAGTCACCAAAACAGATAATCGTGGCAGAGCC
1 ACCAGAACAGATATATGTGACAGAGCCACCAAAACAGATAATCGTGGCAGAGCC
* * * * *
72654771 ACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGATATATGTGACAGAGCCACCAAAACAGATAATCGTGGCAGAGCC
*
72654825 ACCAGGACAGATATAT
1 ACCAGAACAGATATAT
72654841 ATATATGTGG
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
53 13 0.21
54 48 0.79
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.17
Consensus pattern (54 bp):
ACCAGAACAGATATATGTGACAGAGCCACCAAAACAGATAATCGTGGCAGAGCC
Found at i:72655232 original size:81 final size:81
Alignment explanation
Indices: 72655112--72655411 Score: 431
Period size: 81 Copynumber: 3.7 Consensus size: 81
72655102 TAAAATGGTA
* *
72655112 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCT
* **
72655176 ACAGGGGTATTTTAGT
66 ACAAGGGTATTTCGGT
* * * * *
72655192 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACATGGGCATTTTAGTAATTCTACCTT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCT
*
72655257 ATAAGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
* * ** *
72655273 ATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCT
72655338 ACAAGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
* *
72655354 ATTTCTACCCTACAAGGGTATTTTGATAATTCTACCCTACAGGGGTATTTCAATAATT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATT
72655412 TTGTAAATCG
Statistics
Matches: 192, Mismatches: 27, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
80 4 0.02
81 188 0.98
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.37
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCT
ACAAGGGTATTTCGGT
Found at i:72655411 original size:27 final size:27
Alignment explanation
Indices: 72655108--72655404 Score: 369
Period size: 27 Copynumber: 11.0 Consensus size: 27
72655098 GGGGTAAAAT
* * *
72655108 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72655135 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
72655162 AATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72655189 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
72655216 GGTAATTCTACCCTACATGGGCATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
72655243 AGTAATTCTACCTTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72655270 GGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72655297 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72655324 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72655351 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72655378 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
72655405 AATAATTTTG
Statistics
Matches: 233, Mismatches: 37, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 233 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:72655481 original size:27 final size:27
Alignment explanation
Indices: 72655460--72655552 Score: 107
Period size: 27 Copynumber: 3.4 Consensus size: 27
72655450 TGGTACTTTG
*
72655460 GTAATTTAACAAGTCGAGGGTATTTCA
1 GTAATTTTACAAGTCGAGGGTATTTCA
*
72655487 ATAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTTTACAAGTCGAGGGTATTTCA
* * * **
72655514 GTAATTTCACAAAT-TAGGGGTATTTTG
1 GTAATTTTACAAGTCGA-GGGTATTTCA
72655541 GTAATTTTACAA
1 GTAATTTTACAA
72655553 ACTAGGGGTA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.02
27 55 0.98
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (27 bp):
GTAATTTTACAAGTCGAGGGTATTTCA
Found at i:72655541 original size:81 final size:81
Alignment explanation
Indices: 72655451--72655708 Score: 227
Period size: 81 Copynumber: 3.2 Consensus size: 81
72655441 ATAAATCAAT
* * **
72655451 GGTACTTTGGTAATTTAACAAGTCGA-GGGTATTTCAATAATTTTACAAGTC-GAGGGTATTTCA
1 GGTATTTTGGTAATTTAACAA-ACGAGGGGTATTTCAATAATTTTACAAACCAG-GGGTATTTCA
**
72655514 GTAATTTCACAAATTAGG
64 GTAATTTCACAAACCAGG
* * ** **
72655532 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGT
1 GGTATTTTGGTAATTTAACAAACGAGGGGTATTTCAATAATTTTACAAACCAGGGGTATTTCAGT
*
72655597 AATTTTACAAACCAGG
66 AATTTCACAAACCAGG
* * * * * * * **
72655613 GGTATTTTGGTGATTTTATAAACCAAGGGTA-TTCTAGTAATTTTACAAACCAAGGGTATTTTGG
1 GGTATTTTGGTAATTTAACAAACGAGGGGTATTTC-AATAATTTTACAAACCAGGGGTATTTCAG
** * *
72655677 TAATTT-GTAAACAAAG
65 TAATTTCACAAACCAGG
72655693 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
72655709 CGTAAACTAA
Statistics
Matches: 148, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
80 25 0.17
81 122 0.82
82 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.38
Consensus pattern (81 bp):
GGTATTTTGGTAATTTAACAAACGAGGGGTATTTCAATAATTTTACAAACCAGGGGTATTTCAGT
AATTTCACAAACCAGG
Found at i:72655553 original size:27 final size:27
Alignment explanation
Indices: 72655504--72655708 Score: 252
Period size: 27 Copynumber: 7.6 Consensus size: 27
72655494 TACAAGTCGA
** * **
72655504 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
72655531 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
72655558 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
72655585 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
72655612 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
72655639 GGGTATTCTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
72655666 GGGTATTTTGGTAATTTGT--AAACAAA
1 GGGTATTTTGGTAATTT-TACAAACCAG
72655692 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
72655709 CGTAAACTAA
Statistics
Matches: 160, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
26 23 0.14
27 136 0.85
28 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:72655562 original size:54 final size:54
Alignment explanation
Indices: 72655451--72655708 Score: 252
Period size: 54 Copynumber: 4.8 Consensus size: 54
72655441 ATAAATCAAT
* * ** * *** **
72655451 GGTACTTTGGTAATTTAACAAGTCGAGGGTATTTCAATAATTTTACAAGTC-GAG
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAG-G
** * ** * *
72655505 GGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGG
* *
72655559 GGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGG
* * * * *
72655613 GGTATTTTGGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGG
*
72655667 GGTATTTTGGTAATTTGT--AAACAAAGGGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT-TACAAACCAAGGGTATTTTGGTAATTT
72655709 CGTAAACTAA
Statistics
Matches: 170, Mismatches: 32, Indels: 5
0.82 0.15 0.02
Matches are distributed among these distances:
53 21 0.12
54 147 0.86
55 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.38
Consensus pattern (54 bp):
GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGG
Found at i:72655723 original size:26 final size:25
Alignment explanation
Indices: 72655586--72655724 Score: 86
Period size: 27 Copynumber: 5.2 Consensus size: 25
72655576 ACAAACCAGG
**
72655586 GGTATTTTGGTAATTT-TACAAACCAGG
1 GGTATTTTGGTAATTTGT--AAA-CAAA
* * *
72655613 GGTATTTTGGTGATTTTATAAACCAAG
1 GGTATTTTGGT-AATTTGTAAA-CAAA
* * *
72655640 GGTATTCTAGTAATTT-TACAAACCAAG
1 GGTATTTTGGTAATTTGT--AAA-CAAA
72655667 GGTATTTTGGTAATTTGTAAACAAA
1 GGTATTTTGGTAATTTGTAAACAAA
72655692 GGGTATTTTGGTAATTTCGTAAACTAAA
1 -GGTATTTTGGTAATTT-GTAAAC-AAA
72655720 -GTATT
1 GGTATT
72655725 CTAAACAGGG
Statistics
Matches: 96, Mismatches: 8, Indels: 17
0.79 0.07 0.14
Matches are distributed among these distances:
25 4 0.04
26 28 0.29
27 55 0.57
28 8 0.08
29 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (25 bp):
GGTATTTTGGTAATTTGTAAACAAA
Found at i:72657669 original size:6 final size:6
Alignment explanation
Indices: 72657658--72657742 Score: 77
Period size: 6 Copynumber: 13.8 Consensus size: 6
72657648 TATCAAAACT
* *
72657658 AGAATC AGAATC AGAATC AGAATC AG-GTGAC AAAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
*
72657707 AGAATC A-ATATC AGGTAA-C AGAATC AAAATC AGAAT
1 AGAATC AGA-ATC A-G-AATC AGAATC AGAATC AGAAT
72657743 GTGAATACAA
Statistics
Matches: 65, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.83
7 4 0.06
8 2 0.03
9 1 0.02
ACGTcount: A:0.51, C:0.15, G:0.16, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:72657670 original size:18 final size:18
Alignment explanation
Indices: 72657660--72657742 Score: 71
Period size: 19 Copynumber: 4.5 Consensus size: 18
72657650 TCAAAACTAG
*
72657660 AATCAGAATCAGAATCAG
1 AATCAGAATCAGAATCAA
* * *
72657678 AATCAG-GTGACAAAATCAG
1 AATCAGAAT--CAGAATCAA
72657697 AATCAGAATCAGAATCAA
1 AATCAGAATCAGAATCAA
*
72657715 TATCAGGTAA-CAGAATCAA
1 AATCA-G-AATCAGAATCAA
72657734 AATCAGAAT
1 AATCAGAAT
72657743 GTGAATACAA
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
17 3 0.06
18 18 0.35
19 28 0.54
20 3 0.06
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.18
Consensus pattern (18 bp):
AATCAGAATCAGAATCAA
Found at i:72657699 original size:37 final size:37
Alignment explanation
Indices: 72657658--72657742 Score: 127
Period size: 37 Copynumber: 2.3 Consensus size: 37
72657648 TATCAAAACT
*
72657658 AGAATCAGAATCAGAATCAGA-ATCAGGTGACAAAATC
1 AGAATCAGAATCAGAATCA-ATATCAGGTAACAAAATC
*
72657695 AGAATCAGAATCAGAATCAATATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAATATCAGGTAACAAAATC
*
72657732 AAAATCAGAAT
1 AGAATCAGAAT
72657743 GTGAATACAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
36 1 0.02
37 43 0.98
ACGTcount: A:0.51, C:0.15, G:0.16, T:0.18
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAATATCAGGTAACAAAATC
Found at i:72657923 original size:27 final size:26
Alignment explanation
Indices: 72657861--72657979 Score: 157
Period size: 27 Copynumber: 4.5 Consensus size: 26
72657851 AGCATGGCTG
* * *
72657861 CCAGAACAGATAATGTGACAAAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
72657887 CCAGAACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
72657914 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
72657941 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
*
72657968 CCAGGACAGATA
1 CCAGAACAGATA
72657980 TATATATATG
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
26 15 0.18
27 66 0.80
28 2 0.02
ACGTcount: A:0.39, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:72657951 original size:54 final size:54
Alignment explanation
Indices: 72657861--72657982 Score: 174
Period size: 54 Copynumber: 2.3 Consensus size: 54
72657851 AGCATGGCTG
*
72657861 CCAGAACAGATA-ATGTGACAAAGTCACCAGAACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAAAGCCACCAGAACAGATAATCGTGGCAGAGCCA
* * * * *
72657914 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAAAGCCACCAGAACAGATAATCGTGGCAGAGCCA
*
72657968 CCAGGACAGATATAT
1 CCAGAACAGATATAT
72657983 ATATATGTGG
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
53 12 0.20
54 49 0.80
ACGTcount: A:0.39, C:0.22, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAAAGCCACCAGAACAGATAATCGTGGCAGAGCCA
Found at i:72658689 original size:27 final size:27
Alignment explanation
Indices: 72658251--72658681 Score: 538
Period size: 27 Copynumber: 16.0 Consensus size: 27
72658241 GGGGTAAAAT
* * ** *
72658251 GGTAATTTTACCCCACAATGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
72658278 GGTAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
72658305 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
72658332 GGTATTTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
72658359 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
72658386 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
72658413 GGTATTTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
72658440 GGTATTTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
72658467 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
72658494 GGGAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
72658521 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* **
72658548 GGTAATTCTACCCTATAACGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
72658575 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
72658602 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
72658629 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
72658656 GATAATTCTACCTTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
72658682 TAATAATTTT
Statistics
Matches: 358, Mismatches: 46, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 358 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:72658704 original size:27 final size:27
Alignment explanation
Indices: 72658674--72659123 Score: 229
Period size: 27 Copynumber: 16.7 Consensus size: 27
72658664 TACCTTACAG
**
72658674 GGGTATTTTAATAATTTTGTAAATCGA
1 GGGTATTTTAATAATTTTACAAATCGA
***** * * *
72658701 GGGTAAAACGATAATTCTATAAATCAA
1 GGGTATTTTAATAATTTTACAAATCGA
* ** *
72658728 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTAATAATTTTACAAATCGA
*
72658755 GGGTATTTTAATAATTTTACAAGTCGA
1 GGGTATTTTAATAATTTTACAAATCGA
* * *
72658782 GGGTATTTCAGTAATTTCACAAATC-A
1 GGGTATTTTAATAATTTTACAAATCGA
** *
72658808 GGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTATTTTAATAATTTTACAAATCGA
* *
72658835 GGGGTATTTTGATAATTTTACAAA-CTA
1 -GGGTATTTTAATAATTTTACAAATCGA
** *
72658862 GGGGTATTTTGGTAATTTTACAAAGTAG-
1 -GGGTATTTTAATAATTTTACAAA-TCGA
* * *
72658890 GGGTATTTTGATAATTGTACAAA-CCA
1 GGGTATTTTAATAATTTTACAAATCGA
** *
72658916 GGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTATTTTAATAATTTTACAAATCGA
* *
72658943 GGGGTATTTTGATAATTTTACAAA-CTA
1 -GGGTATTTTAATAATTTTACAAATCGA
** *
72658970 GGGGTATTTTGGTAATTTTACAAAGTAG-
1 -GGGTATTTTAATAATTTTACAAA-TCGA
* * *
72658998 GGGTATTTTGATAATTGTACAAA-CCA
1 GGGTATTTTAATAATTTTACAAATCGA
** *
72659024 GGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTATTTTAATAATTTTACAAATCGA
** * * * *
72659051 GGGGTATTTTGGTGATTTTATAAACCAA
1 -GGGTATTTTAATAATTTTACAAATCGA
* * * *
72659079 AGGTATTCTAGTAATTTTACAAA-CAA
1 GGGTATTTTAATAATTTTACAAATCGA
**
72659105 GGGGTATTTTGGTAATTTT
1 -GGGTATTTTAATAATTTT
72659124 GTAAACCAAG
Statistics
Matches: 351, Mismatches: 60, Indels: 24
0.81 0.14 0.06
Matches are distributed among these distances:
26 5 0.01
27 344 0.98
28 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTAATAATTTTACAAATCGA
Found at i:72659129 original size:27 final size:27
Alignment explanation
Indices: 72658728--72659149 Score: 499
Period size: 27 Copynumber: 15.6 Consensus size: 27
72658718 TATAAATCAA
* * *
72658728 GGGTACTTTGGTAATTTTAC-AAGTCG
1 GGGTATTTTGGTAATTTTACAAACTAG
** * *
72658754 AGGGTATTTTAATAATTTTAC-AAGTCG
1 -GGGTATTTTGGTAATTTTACAAACTAG
** *
72658781 AGGGTATTTCAGTAATTTCACAAA-TCAG
1 -GGGTATTTTGGTAATTTTACAAACT-AG
72658809 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
72658836 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
72658863 GGGTATTTTGGTAATTTTACAAAGTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
72658890 GGGTATTTTGATAATTGTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
72658917 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
72658944 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
72658971 GGGTATTTTGGTAATTTTACAAAGTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
72658998 GGGTATTTTGATAATTGTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
72659025 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
72659052 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
72659079 AGGTATTCTAGTAATTTTACAAACAAG
1 GGGTATTTTGGTAATTTTACAAACTAG
** * *
72659106 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
*
72659133 GGGTAGTTTGGTAATTT
1 GGGTATTTTGGTAATTT
72659150 CCTAAACTAA
Statistics
Matches: 343, Mismatches: 49, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
27 339 0.99
28 4 0.01
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:72659158 original size:108 final size:108
Alignment explanation
Indices: 72658728--72659149 Score: 555
Period size: 108 Copynumber: 3.9 Consensus size: 108
72658718 TATAAATCAA
* * * * ** *
72658728 GGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTTAATAATTTTAC-AAGTCGAGGGTA-TTT
1 GGGTATTTTGATAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAAGTAG-GGGTATTTT
* *
72658790 CAGTAATT-TCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAG
64 GA-TAATTGT-ACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
72658836 GGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAGTAGGGGTATTTTGA
1 GGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAGTAGGGGTATTTTGA
72658901 TAATTGTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
66 TAATTGTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
72658944 GGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAGTAGGGGTATTTTGA
1 GGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAGTAGGGGTATTTTGA
72659009 TAATTGTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
66 TAATTGTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
* * * * ** * * ** *
72659052 GGGTATTTTGGTGATTTTATAAACCAAAGGTATTCTAGTAATTTTACAAACAAGGGGTATTTTGG
1 GGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAGTAGGGGTATTTTGA
* ** * *
72659117 TAATTTTGTAAACCAAGGGTAGTTTGGTAATTT
66 TAATTGTACAAACCAGGGGTATTTTGGTAATTT
72659150 CCTAAACTAA
Statistics
Matches: 285, Mismatches: 25, Indels: 8
0.90 0.08 0.03
Matches are distributed among these distances:
108 271 0.95
109 14 0.05
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (108 bp):
GGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAGTAGGGGTATTTTGA
TAATTGTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
Found at i:72661886 original size:57 final size:57
Alignment explanation
Indices: 72661832--72661939 Score: 139
Period size: 57 Copynumber: 1.9 Consensus size: 57
72661822 CTATATATAG
* * *
72661832 CCCACTAGG-CCTAATCTC-TTTCATATGGCCAATGAGGCCCAAATCACATTTATATGA
1 CCCACTAGGCCCAAATCACATTT-ATATGGCC-ATGAGGCCCAAAACACATTTATATGA
* *
72661889 CCCATTAGGCCCAAATCACATTTATATGGCCATTAGGCCCAAAACACATTT
1 CCCACTAGGCCCAAATCACATTTATATGGCCATGAGGCCCAAAACACATTT
72661940 GCAGTCATGC
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
57 26 0.59
58 15 0.34
59 3 0.07
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (57 bp):
CCCACTAGGCCCAAATCACATTTATATGGCCATGAGGCCCAAAACACATTTATATGA
Found at i:72661930 original size:28 final size:28
Alignment explanation
Indices: 72661854--72661939 Score: 127
Period size: 29 Copynumber: 3.0 Consensus size: 28
72661844 AATCTCTTTC
*
72661854 ATATGGCCAATGAGGCCCAAATCACATTT
1 ATATGGCC-ATTAGGCCCAAATCACATTT
*
72661883 ATATGACCCATTAGGCCCAAATCACATTT
1 ATATG-GCCATTAGGCCCAAATCACATTT
*
72661912 ATATGGCCATTAGGCCCAAAACACATTT
1 ATATGGCCATTAGGCCCAAATCACATTT
72661940 GCAGTCATGC
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
28 21 0.40
29 29 0.56
30 2 0.04
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.26
Consensus pattern (28 bp):
ATATGGCCATTAGGCCCAAATCACATTT
Found at i:72666025 original size:21 final size:21
Alignment explanation
Indices: 72666001--72666048 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
72665991 TCATCTTCAG
* *
72666001 CAACTTCTTCTTCTTCAGCAA
1 CAACTTCCTCTTCTGCAGCAA
72666022 CAACTTCCTCTTCTGCAGCAA
1 CAACTTCCTCTTCTGCAGCAA
72666043 CAACTT
1 CAACTT
72666049 TGTTCTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.25, C:0.35, G:0.06, T:0.33
Consensus pattern (21 bp):
CAACTTCCTCTTCTGCAGCAA
Found at i:72666028 original size:18 final size:18
Alignment explanation
Indices: 72665994--72666048 Score: 56
Period size: 21 Copynumber: 2.9 Consensus size: 18
72665984 TTCTTTTTCA
**
72665994 TCTTCAGCAACTTCTTCT
1 TCTTCAGCAACAACTTCT
72666012 TCTTCAGCAACAACTTCCTCT
1 TCTTCAGCAACAAC-T--TCT
*
72666033 TCTGCAGCAACAACTT
1 TCTTCAGCAACAACTT
72666049 TGTTCTCAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
18 13 0.42
19 1 0.03
20 1 0.03
21 16 0.52
ACGTcount: A:0.24, C:0.35, G:0.07, T:0.35
Consensus pattern (18 bp):
TCTTCAGCAACAACTTCT
Found at i:72670454 original size:13 final size:13
Alignment explanation
Indices: 72670436--72670460 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72670426 TAATGGTATA
72670436 TTGAATCCATGAT
1 TTGAATCCATGAT
72670449 TTGAATCCATGA
1 TTGAATCCATGA
72670461 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:72672029 original size:47 final size:47
Alignment explanation
Indices: 72671975--72672356 Score: 728
Period size: 47 Copynumber: 8.1 Consensus size: 47
72671965 TATTTGAGTA
* *
72671975 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
72672022 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
72672069 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
72672116 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
72672163 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
72672210 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
72672257 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
72672304 AATGTGAAAGTGTATATATGTGATAAGGCCGAATTGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAA-TGGCCAATGTGATG
72672352 AATGT
1 AATGT
72672357 AAGGCCTAAT
Statistics
Matches: 331, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
47 313 0.95
48 18 0.05
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:72672085 original size:94 final size:94
Alignment explanation
Indices: 72671975--72673268 Score: 1137
Period size: 94 Copynumber: 13.8 Consensus size: 94
72671965 TATTTGAGTA
* *
72671975 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
72672040 TGTGATAAGGCCGAATGGCCAATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
72672069 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
72672134 TGTGATAAGGCCGAATGGCCAATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
72672163 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
72672228 TGTGATAAGGCCGAATGGCCAATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
72672257 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
72672322 TGTGATAAGGCCGAATTGGCCGATGTGATG
66 TGTGATAAGGCCGAA-TGGCCAATGTGATG
** *** * * * * * *
72672352 AATGT--AAG-GCCTA-ATG-GCCGATG-TG-AT-G--AATGTGA-AAGTGTATATA-TGTGATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAAAGTGT-ATA
* **
72672405 -A-G-GCCTAATGGCCG-ATGTGAAGAATGTGA--
64 TATGTG-ATAA-GGCCGAATG-G-CCAATGTGATG
* * ** * * * *
72672434 AA-GTGTATATA-TGTGATA-A-G-GCCTAATAGCC-AATGTGATGAATGTGA-AAGTGTATATA
1 AATGTG-A-A-AGTGT-ATATATGTG-ATAA-GGCCGAATG-G-CCAATGTGATGAATGT-GAAA
* * * *** *
72672492 -TGTGATA-AGGCCT-A-ATGGCCGATGTGATGAATGTGA-A
57 GTGT-ATATATG--TGATAAGGCCGA-ATGGCCAATGTGATG
* * * * * * ** * * * *
72672529 AGTGTATATA-TGTGATA-AGGCCGA-ATGGCC-AATGTGATGAATGTGA-AAGTGTATATA-TG
1 AATGT-GAAAGTGT-ATATATG-TGATAAGGCCGAATG-G-CCAATGTGATGAATGT-GAAAGTG
* * * **
72672588 TGATA-AGGCCGA-ATGGCC-AATGTGATGAATGTGA--
60 T-ATATATG-TGATAAGGCCGAATG-G-CCAATGTGATG
* * *
72672622 AA-GTGTATATA-TGTGATA-AGGCCGA-ATGGCC-AAT-G----T--GATGAATGTGAAAGTGT
1 AATGTG-A-A-AGTGT-ATATATG-TGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
72672675 ATATATGTGATAAGGCCGAATGGCCAATGTGATG
61 ATATATGTGATAAGGCCGAATGGCCAATGTGATG
72672709 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
72672774 TGTGATAAGGCCGAATGGCCAATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
72672803 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
72672868 TGTGATAAGGCCGAATGGCCAATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
72672897 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
72672962 TGTGATAAGGCCGAATGGCCAATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
*
72672991 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGTGGCCGATGTGATGAATG
1 AATGTGAAAGTGTATATATGTG---A----TAA-GGCCGA----A--TGGCCAATGTGATGAATG
* * * *
72673056 TGAAAGCGTATATATCTGATAAGGCCTAATGGCCGATGTGATG
52 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
72673099 AATGTGAAAGCGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* *
72673164 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * * * * *
72673195 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
72673260 TGTGATAAG
66 TGTGATAAG
72673269 TCCCGAAGGG
Statistics
Matches: 1051, Mismatches: 73, Indels: 152
0.82 0.06 0.12
Matches are distributed among these distances:
81 2 0.00
82 5 0.00
83 6 0.01
84 19 0.02
85 35 0.03
86 30 0.03
87 17 0.02
88 7 0.01
89 3 0.00
90 3 0.00
91 4 0.00
92 10 0.01
93 6 0.01
94 693 0.66
95 23 0.02
96 90 0.09
97 2 0.00
100 5 0.00
101 6 0.01
102 6 0.01
105 1 0.00
106 1 0.00
108 77 0.07
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:72672134 original size:141 final size:141
Alignment explanation
Indices: 72671975--72673268 Score: 1944
Period size: 141 Copynumber: 9.2 Consensus size: 141
72671965 TATTTGAGTA
* *
72671975 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
72672040 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
72672105 CCAATGTGATG
131 CCAATGTGATG
72672116 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
72672181 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
72672246 CCAATGTGATG
131 CCAATGTGATG
72672257 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* ** *** * *
72672322 TGTGATAAGGCCGAATTGGCCGATGTGATGAATGT--AAG-GCCTA-ATG-GCCGATG-TG-AT-
66 TGTGATAAGGCCGAA-TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
72672379 G--AATGTGA--
130 GCCAATGTGATG
* * * * * * *
72672387 AA-GTGTATA-TATGTG------ATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTATAT
1 AATGTG-AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * *
72672444 ATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
65 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
*
72672509 GCCGATGTGATG
130 GCCAATGTGATG
72672521 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
72672586 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
72672651 CCAATGTGATG
131 CCAATGTGATG
72672662 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
72672727 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
72672792 CCAATGTGATG
131 CCAATGTGATG
72672803 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
72672868 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
72672933 CCAATGTGATG
131 CCAATGTGATG
72672944 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
72673009 TGTGATAAGGCCTAATGGCCGATGTGATGTGGCCGATGTGATGAATGTGAAAGCGTATATATCTG
66 TGTG---A----TAA-GGCCGA----A--TGGCCAATGTGATGAATGTGAAAGTGTATATATGTG
* *
72673074 ATAAGGCCTAATGGCCGATGTGATG
117 ATAAGGCCGAATGGCCAATGTGATG
* * * *
72673099 AATGTGAAAGCGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* * * * *
72673164 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGT
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
*
72673229 GGCCAACGTGATG
129 GGCCAATGTGATG
* *
72673242 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
72673269 TCCCGAAGGG
Statistics
Matches: 1054, Mismatches: 61, Indels: 74
0.89 0.05 0.06
Matches are distributed among these distances:
122 17 0.02
123 54 0.05
124 3 0.00
125 3 0.00
126 3 0.00
127 3 0.00
129 8 0.01
130 5 0.00
132 13 0.01
134 5 0.00
135 8 0.01
136 1 0.00
137 3 0.00
138 3 0.00
139 3 0.00
140 3 0.00
141 682 0.65
142 18 0.02
143 77 0.07
144 1 0.00
145 1 0.00
148 3 0.00
149 11 0.01
150 3 0.00
153 1 0.00
154 1 0.00
155 111 0.11
157 10 0.01
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
CCAATGTGATG
Found at i:72672368 original size:76 final size:75
Alignment explanation
Indices: 72672280--72672431 Score: 259
Period size: 76 Copynumber: 2.0 Consensus size: 75
72672270 ATATATGTGA
72672280 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATTGGCCGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA-TGGCCGA
*
72672345 TGTGATGAATG
65 TGTGAAGAATG
* * *
72672356 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGAT
72672421 GTGAAGAATG
66 GTGAAGAATG
72672431 T
1 T
72672432 GAAAGTGTAT
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
75 18 0.25
76 54 0.75
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.27
Consensus pattern (75 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGAT
GTGAAGAATG
Found at i:72672372 original size:28 final size:29
Alignment explanation
Indices: 72672327--72672384 Score: 100
Period size: 28 Copynumber: 2.0 Consensus size: 29
72672317 ATATATGTGA
72672327 TAAGGCCGAATTGGCCGATGTGATGAATG
1 TAAGGCCGAATTGGCCGATGTGATGAATG
*
72672356 TAAGGCCTAA-TGGCCGATGTGATGAATG
1 TAAGGCCGAATTGGCCGATGTGATGAATG
72672384 T
1 T
72672385 GAAAGTGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 19 0.68
29 9 0.32
ACGTcount: A:0.28, C:0.14, G:0.33, T:0.26
Consensus pattern (29 bp):
TAAGGCCGAATTGGCCGATGTGATGAATG
Found at i:72672409 original size:47 final size:47
Alignment explanation
Indices: 72672356--72673268 Score: 1448
Period size: 47 Copynumber: 19.1 Consensus size: 47
72672346 GTGATGAATG
* *
72672356 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
72672403 TAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
* *
72672450 TAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
* *
72672497 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
72672544 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
72672591 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
72672638 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
72672685 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
72672732 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
72672779 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
72672826 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
72672873 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
72672920 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
72672967 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
72673014 TAAGGCCTAATGGCCGATGTGATGTGGCCGATGTGATGAATGTGAAAGCGTATATATCTGA
1 TAAGGCCGAATGGCC-A----ATGT----GA--TG---AATGTGAAAGTGTATATATGTGA
* * *
72673075 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
72673122 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
72673171 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * *
72673218 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
72673265 TAAG
1 TAAG
72673269 TCCCGAAGGG
Statistics
Matches: 824, Mismatches: 26, Indels: 32
0.93 0.03 0.04
Matches are distributed among these distances:
47 725 0.88
48 1 0.00
49 46 0.06
50 2 0.00
52 6 0.01
56 6 0.01
58 2 0.00
61 36 0.04
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:72673043 original size:14 final size:14
Alignment explanation
Indices: 72673024--72673051 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
72673014 TAAGGCCTAA
72673024 TGGCCGATGTGATG
1 TGGCCGATGTGATG
72673038 TGGCCGATGTGATG
1 TGGCCGATGTGATG
72673052 AATGTGAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.43, T:0.29
Consensus pattern (14 bp):
TGGCCGATGTGATG
Found at i:72673049 original size:61 final size:61
Alignment explanation
Indices: 72672977--72673098 Score: 217
Period size: 61 Copynumber: 2.0 Consensus size: 61
72672967 TAAGGCCGAA
* *
72672977 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 TGGCCAATGTGATGAATGTGAAAGCGTATATATCTGATAAGGCCTAATGGCCGATGTGATG
*
72673038 TGGCCGATGTGATGAATGTGAAAGCGTATATATCTGATAAGGCCTAATGGCCGATGTGATG
1 TGGCCAATGTGATGAATGTGAAAGCGTATATATCTGATAAGGCCTAATGGCCGATGTGATG
72673099 AATGTGAAAG
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.29, C:0.11, G:0.31, T:0.29
Consensus pattern (61 bp):
TGGCCAATGTGATGAATGTGAAAGCGTATATATCTGATAAGGCCTAATGGCCGATGTGATG
Found at i:72673057 original size:108 final size:106
Alignment explanation
Indices: 72672929--72673217 Score: 418
Period size: 108 Copynumber: 2.8 Consensus size: 106
72672919 ATAAGGCCGA
* *
72672929 ATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
1 ATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
72672994 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
66 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
* * *
72673035 ATGTGGCCGATGTGATGAATGTGAAAGCGTATATATCTGATAAGGCCTAATGGCCGATGTGATGA
1 A--TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
72673100 ATGTGAAAGCGTATATATGTGATAAGGCCTAATAGCCGATGTG
64 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
*
72673143 AT-G--AATGTGA--AA-GT----GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 ATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
72673198 GTGAAAGTGTATATATGTGA
66 GTGAAAGTGTATATATGTGA
72673218 CAGGGCCGAG
Statistics
Matches: 169, Mismatches: 12, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
96 57 0.34
100 2 0.01
101 2 0.01
103 6 0.04
105 1 0.01
106 2 0.01
108 99 0.59
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (106 bp):
ATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
Done.