Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 217 of 297
Found at i:73623598 original size:79 final size:81
Alignment explanation
Indices: 73623462--73623646 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
73623452 TTGAATGATG
*
73623462 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
73623526 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
73623541 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
73623603 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
73623621 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73623647 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:73623660 original size:40 final size:40
Alignment explanation
Indices: 73623463--73623646 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
73623453 TGAATGATGT
* * * *
73623463 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
73623503 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
73623543 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
73623581 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
73623622 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
73623647 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:73623668 original size:79 final size:79
Alignment explanation
Indices: 73623515--73623679 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
73623505 GGACTAAGAT
* **
73623515 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
73623580 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
73623594 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
73623657 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
73623673 CCGAAGG
1 CCGAAGG
73623680 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:73631527 original size:79 final size:81
Alignment explanation
Indices: 73631391--73631575 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
73631381 TTGAATGATG
*
73631391 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
73631455 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
73631470 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
73631532 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
73631550 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73631576 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:73631589 original size:40 final size:40
Alignment explanation
Indices: 73631392--73631575 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
73631382 TGAATGATGT
* * * *
73631392 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
73631432 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
73631472 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
73631510 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
73631551 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
73631576 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:73631597 original size:79 final size:79
Alignment explanation
Indices: 73631444--73631608 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
73631434 GGACTAAGAT
* **
73631444 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
73631509 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
73631523 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
73631586 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
73631602 CCGAAGG
1 CCGAAGG
73631609 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:73640589 original size:40 final size:40
Alignment explanation
Indices: 73640494--73640751 Score: 337
Period size: 40 Copynumber: 6.5 Consensus size: 40
73640484 TGGATGATAA
* *
73640494 CCGGGATAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
73640535 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
73640575 CCGGGCTAATTCCCGAAGGCATTTGTGCGGGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
73640615 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
73640655 CCGGGCTAAGTCTCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
73640695 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
73640734 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
73640752 TACTTGGCTT
Statistics
Matches: 195, Mismatches: 19, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
38 15 0.08
39 15 0.08
40 138 0.71
41 23 0.12
42 4 0.02
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:73642411 original size:93 final size:93
Alignment explanation
Indices: 73642252--73642422 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
73642242 GCCCCTAAGT
* * *
73642252 GAACTCGGACTCAAATCAATGAGCTCGGGCGTTCACATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAAATCAACGAGCTCGGACGTTCACATCCATAAATGAACTCAGACTCAACTCAA
73642317 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
73642345 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGA-ATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCGGACTCAAATCAACGAGCTCGGAC-GTTCACATCCATAAATGAACTCAGACTCAACTCA
73642409 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
73642423 TCAACCATCC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
93 66 0.96
94 3 0.04
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAAATCAACGAGCTCGGACGTTCACATCCATAAATGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:73642438 original size:46 final size:45
Alignment explanation
Indices: 73642297--73642438 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 45
73642287 CATCCATAAA
73642297 TGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT-AG
* * * *
73642344 CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGAATCCAT-AAG
1 TGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAA-CCATCTAG
*
73642390 TGAACTCAGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTAG
73642436 TGA
1 TGA
73642439 CATGTCACTT
Statistics
Matches: 77, Mismatches: 9, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
44 6 0.08
45 5 0.06
46 32 0.42
47 31 0.40
48 1 0.01
49 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTAG
Found at i:73642876 original size:30 final size:30
Alignment explanation
Indices: 73642842--73642901 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
73642832 ATTTAATACG
73642842 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
73642872 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
73642902 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:73646488 original size:42 final size:41
Alignment explanation
Indices: 73646420--73646543 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 41
73646410 TGATTTGAGA
* *
73646420 ATTACATGTAAGAACATGTCTGGGACATTGGCATCGTATATG
1 ATTACATGTAAG-ACCTGTCTAGGACATTGGCATCGTATATG
* * * * *
73646462 ATTTCGTGTAAGACCCTGTCTAGGACAATGGCATCAATATTTG
1 ATTACATGTAAGA-CCTGTCTAGGACATTGGCATC-GTATATG
** *
73646505 ATTACATGTAAGACCTCGTCTAGGATGTTGGCATTGTAT
1 ATTACATGTAAGACCT-GTCTAGGACATTGGCATCGTAT
73646544 GAGCTTTTCG
Statistics
Matches: 65, Mismatches: 14, Indels: 6
0.76 0.16 0.07
Matches are distributed among these distances:
41 1 0.02
42 34 0.52
43 30 0.46
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (41 bp):
ATTACATGTAAGACCTGTCTAGGACATTGGCATCGTATATG
Found at i:73646537 original size:43 final size:42
Alignment explanation
Indices: 73646420--73646538 Score: 116
Period size: 43 Copynumber: 2.8 Consensus size: 42
73646410 TGATTTGAGA
* * *
73646420 ATTACATGTAAGAACAT-GTCTGGGACATTGGCATCGTATATG
1 ATTACATGTAAG-ACCTCGTCTAGGACATTGGCATCATATATG
* * * *
73646462 ATTTCGTGTAAGACC-CTGTCTAGGACAATGGCATCAATATTTG
1 ATTACATGTAAGACCTC-GTCTAGGACATTGGCATC-ATATATG
**
73646505 ATTACATGTAAGACCTCGTCTAGGATGTTGGCAT
1 ATTACATGTAAGACCTCGTCTAGGACATTGGCAT
73646539 TGTATGAGCT
Statistics
Matches: 61, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
41 2 0.03
42 26 0.43
43 32 0.52
44 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.32
Consensus pattern (42 bp):
ATTACATGTAAGACCTCGTCTAGGACATTGGCATCATATATG
Found at i:73649917 original size:42 final size:42
Alignment explanation
Indices: 73649787--73649917 Score: 128
Period size: 42 Copynumber: 3.2 Consensus size: 42
73649777 TAAAGCCTGT
73649787 CCTGCTAGACTCAAAGTCTGATTTTTATACACTGGCAATAAG
1 CCTGCTAGACTCAAAGTCTGATTTTTATACACTGGCAATAAG
* * * * * ** *
73649829 CCTACTAGGC-CTAAG-CTTG-TATTT-CACACTATC-ACAAG
1 CCTGCTAGACTCAAAGTC-TGATTTTTATACACTGGCAATAAG
73649867 ACCTGCTAGACTCAAAGTCTGATTTTTATACACTGGCAATAAG
1 -CCTGCTAGACTCAAAGTCTGATTTTTATACACTGGCAATAAG
*
73649910 CTTGCTAG
1 CCTGCTAG
73649918 GCAATAAGCC
Statistics
Matches: 65, Mismatches: 17, Indels: 14
0.68 0.18 0.15
Matches are distributed among these distances:
38 4 0.06
39 14 0.22
40 11 0.17
41 11 0.17
42 21 0.32
43 4 0.06
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (42 bp):
CCTGCTAGACTCAAAGTCTGATTTTTATACACTGGCAATAAG
Found at i:73655401 original size:46 final size:46
Alignment explanation
Indices: 73655334--73655508 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
73655324 TGTAACCCGC
* *
73655334 CCATAAGTGAACTTAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
73655380 CCATAAGTGAACTCAGACTCAACTCAACGAGCT-GGG-ATGC-CTAGTT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGC-A--T
* *** * * *
73655426 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
73655473 CCATAAGTGAACTTAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG
73655509 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 63 0.60
47 28 0.27
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:73658133 original size:27 final size:27
Alignment explanation
Indices: 73658071--73658185 Score: 119
Period size: 27 Copynumber: 4.3 Consensus size: 27
73658061 AGCATGGCTG
* * *
73658071 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGGACAGATAATTGTGGCAGAGCCA
** *
73658097 CCAAATACAGATAATCGTGGCAGAGCCA
1 CC-AGGACAGATAATTGTGGCAGAGCCA
73658125 CCAGGACAGA-AATATGTGGCAGAGCCA
1 CCAGGACAGATAAT-TGTGGCAGAGCCA
*
73658152 CCA-GATCAGATAATTGTGGCATAGCCA
1 CCAGGA-CAGATAATTGTGGCAGAGCCA
73658179 CCAGGAC
1 CCAGGAC
73658186 GCTTCCTCAA
Statistics
Matches: 74, Mismatches: 9, Indels: 11
0.79 0.10 0.12
Matches are distributed among these distances:
26 7 0.09
27 50 0.68
28 17 0.23
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.15
Consensus pattern (27 bp):
CCAGGACAGATAATTGTGGCAGAGCCA
Found at i:73661448 original size:40 final size:40
Alignment explanation
Indices: 73661404--73661626 Score: 306
Period size: 40 Copynumber: 5.6 Consensus size: 40
73661394 TACTTGCTCG
* * * ** *
73661404 AATGCCTTCGGGACATAGCCTGGATATAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGGGCA
* * **
73661444 AATGCCTTCAGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGGGCA
73661484 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGGGCA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGGGCA
*
73661524 AATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGGGCA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGGGCA
*
73661564 AATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGGGCA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGGGCA
73661604 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
73661627 TTATCATCCA
Statistics
Matches: 173, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 1 0.01
40 172 0.99
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGGGCA
Found at i:73662883 original size:42 final size:43
Alignment explanation
Indices: 73662800--73662884 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
73662790 AACATACCTT
73662800 AGTCTAGCAAACCACCATAGCCGATTTTCTCCAACCTCTTTCC
1 AGTCTAGCAAACCACCATAGCCGATTTTCTCCAACCTCTTTCC
73662843 AGTCTAGCAAACCACCATAGCCG-TTTTCTCCAACCTCTTTCC
1 AGTCTAGCAAACCACCATAGCCGATTTTCTCCAACCTCTTTCC
73662885 CTTCCTTTCT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 19 0.45
43 23 0.55
ACGTcount: A:0.25, C:0.38, G:0.09, T:0.28
Consensus pattern (43 bp):
AGTCTAGCAAACCACCATAGCCGATTTTCTCCAACCTCTTTCC
Found at i:73666532 original size:40 final size:40
Alignment explanation
Indices: 73666488--73666996 Score: 770
Period size: 40 Copynumber: 12.7 Consensus size: 40
73666478 ACCACATGAT
* * * * *
73666488 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * * *
73666528 TGCTCTTCGAGG-TTTAGCACAGATATATTACTAGCACGAA
1 TGCTCTTCG-GGACTTAGCCCGGATACATCACTAGCACGAA
* *
73666568 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
73666608 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
73666648 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
73666688 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
73666728 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
73666768 TGCTCTTCGGGACTTAGGCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
73666808 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
73666848 TGCTCTTCGGGACTTAGGCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
73666888 TGCTCTTCGGGACTTAGCCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAG-CCCGGATACATCACTAGCACGAA
* *
73666929 TGCTCTTCGGGACTTAGCCCGGGTACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
73666969 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
73666997 GTCGAGACCT
Statistics
Matches: 430, Mismatches: 36, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
39 5 0.01
40 386 0.90
41 39 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:73668133 original size:49 final size:49
Alignment explanation
Indices: 73668076--73668172 Score: 176
Period size: 49 Copynumber: 2.0 Consensus size: 49
73668066 TTTCACCAAA
*
73668076 TAAGTAATGTCACCATATTTTTAAAGCGAATACGATGGCAGCTAGTTCG
1 TAAGTAATGTCACCATATTTTTAAAGCAAATACGATGGCAGCTAGTTCG
*
73668125 TAAGTAATGTCGCCATATTTTTAAAGCAAATACGATGGCAGCTAGTTC
1 TAAGTAATGTCACCATATTTTTAAAGCAAATACGATGGCAGCTAGTTC
73668173 AAGATCATGG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (49 bp):
TAAGTAATGTCACCATATTTTTAAAGCAAATACGATGGCAGCTAGTTCG
Found at i:73671191 original size:40 final size:40
Alignment explanation
Indices: 73671139--73671328 Score: 265
Period size: 40 Copynumber: 4.8 Consensus size: 40
73671129 ATAACCACAA
* * * *
73671139 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
73671179 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCATCTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
73671219 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
73671259 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
73671299 GCATAAATGCCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
73671329 GTATTCAAAT
Statistics
Matches: 136, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 132 0.97
41 4 0.03
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:73674012 original size:40 final size:40
Alignment explanation
Indices: 73673951--73674157 Score: 272
Period size: 40 Copynumber: 5.2 Consensus size: 40
73673941 CGGAATTTAG
* * * *
73673951 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
73673991 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
*
73674031 CCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
*
73674071 CCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
73674111 CCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
73674151 CCGGATA
1 CCGGATA
73674158 TCATTCAAAT
Statistics
Matches: 149, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
39 2 0.01
40 144 0.97
41 3 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:73681562 original size:40 final size:40
Alignment explanation
Indices: 73681483--73681740 Score: 342
Period size: 40 Copynumber: 6.5 Consensus size: 40
73681473 AAGCCAAGTA
* * * * *
73681483 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
73681522 CCTTCGGGACATAGCCCGAATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73681562 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73681602 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73681642 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
73681682 CCTTCGAGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
73681722 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73681741 TTATCATCCA
Statistics
Matches: 195, Mismatches: 21, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
39 13 0.07
40 182 0.93
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73697617 original size:249 final size:250
Alignment explanation
Indices: 73697118--73697620 Score: 681
Period size: 249 Copynumber: 2.0 Consensus size: 250
73697108 TATATGTATA
* * * *
73697118 GATTGCTTTTCGAGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTTAAGCCCTTTATAGGGA
1 GATTGCTTTTCGAGTCAAGTTTCTATAGAAACAAACGACATCAGTATTGAAGCCCTTTACAGGGA
* ** *
73697183 GATATCCAAGTTGTAATGCATGAAGATCAGAATAGTCAAACCCTGTAATAGGGGAGACTTTAACT
66 GATATCCAAGTCGTAATGCACAAAGATCAGAATAGTCAAACCCTGTAACAGGGGAGACTTTAACT
* ** *
73697248 AATAAACTGTACTAATTGGCTCAACCAAAAATTCTAGAAAACTATTTGTAGATGGATATATGAGT
131 AATAAACTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATTTGTAGATGCATATATGAGT
* * * * * *
73697313 CTAGTTTCAGGAAAAATTTACGGAACTGGTTTTTGAGTTTTGGAACTCGAGATAT
196 CTAGTTTCAGGAAAAATTCACGGAACTGATTTTCGAGTTGTGAAACTCAAGATAT
* *
73697368 GATT-CTTTTTGAGTCAAGTTTCTATAGAAACAAACGACATCAGTATTGAAG-GCTTGTACAGGG
1 GATTGCTTTTCGAGTCAAGTTTCTATAGAAACAAACGACATCAGTATTGAAGCCCTT-TACAGGG
* * ** * * * * *
73697431 AGATATCCAAGTCGTAATGCGCAAAGGTCAGTGTAGTCGATCCCTGTAACATGGGAGATTTTGAC
65 AGATATCCAAGTCGTAATGCACAAAGATCAGAATAGTCAAACCCTGTAACAGGGGAGACTTTAAC
*
73697496 TAATAAACTGTACTAATTGGCCCGACCAAAAATTCTAGAAAAAAATTTGTAGATGCATATATGAG
130 TAATAAACTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATTTGTAGATGCATATATGAG
73697561 TCTAGTTTCAGGGAAAAA-TCAC-GAAGCTGATTTTCGAGTTGTGAAACTCAAGATAT
195 TCTAGTTTCA-GGAAAAATTCACGGAA-CTGATTTTCGAGTTGTGAAACTCAAGATAT
73697617 GATT
1 GATT
73697621 TTTAAGGTTA
Statistics
Matches: 220, Mismatches: 30, Indels: 7
0.86 0.12 0.03
Matches are distributed among these distances:
248 6 0.03
249 203 0.92
250 11 0.05
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (250 bp):
GATTGCTTTTCGAGTCAAGTTTCTATAGAAACAAACGACATCAGTATTGAAGCCCTTTACAGGGA
GATATCCAAGTCGTAATGCACAAAGATCAGAATAGTCAAACCCTGTAACAGGGGAGACTTTAACT
AATAAACTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATTTGTAGATGCATATATGAGT
CTAGTTTCAGGAAAAATTCACGGAACTGATTTTCGAGTTGTGAAACTCAAGATAT
Found at i:73700918 original size:42 final size:42
Alignment explanation
Indices: 73700815--73700971 Score: 167
Period size: 43 Copynumber: 3.7 Consensus size: 42
73700805 ATATGTGTTA
* *
73700815 TCGTGTAAGACCACATCTGTGACGTTGGCATCG-ACTTATGATT
1 TCGTGTAAGACCACGTCTGGGACGTTGGCATCGTA-TT-TGATT
* *
73700858 TATGTGTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATT
1 T-CGTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATT
* *
73700901 TCGTGTAAGACC-CTGTCTGCGACAG-TGGCATTGATATTTGATT
1 TCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCG-TATTTGATT
* *
73700944 ACTTGTAAGACCACGTCTGGGACGTTGG
1 TCGTGTAAGACCACGTCTGGGACGTTGG
73700972 GATTGTATGA
Statistics
Matches: 96, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
42 26 0.27
43 38 0.40
44 31 0.32
45 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATT
Found at i:73705920 original size:960 final size:960
Alignment explanation
Indices: 73704060--73705980 Score: 3441
Period size: 960 Copynumber: 2.0 Consensus size: 960
73704050 AGTGATTTAA
* * *
73704060 ATGGGTTACCAACTATAATTTCGTCAATAAAAGCTCTGAGTATTGTGAGAAAAGGTTGTGAAGCT
1 ATGGGTTACCAACTATAATTTCATCAATAAAAGCTCTGAATATTATGAGAAAAGGTTGTGAAGCT
* *
73704125 TACTTTGCCTATGTGATTGATTCAAAAGTGTTAGAAAAGAGAGTTGAATTAGTGCCTATTGTCTG
66 TACTTTGCCTATGTGATTGATTCAAAAGTGTCAGAAAAGAGAGTTGAATTAGTACCTATTGTCTG
* *
73704190 TGAATTCCCTAATGCGTTTCCTGACGAACTTTCGGGATTACCTCCGATATGAGAAGTTGAATTTG
131 TGAATTCCATAATGCGTTTCCTGACGAACTTTCGGGATTACCTCCGATACGAGAAGTTGAATTTG
73704255 GCATTAAGTTAATACCGGGAACTACTCTAATTTCGATAGCTCCGTATAGAATGGCTCCGACCGAA
196 GCATTAAGTTAATACCGGGAACTACTCTAATTTCGATAGCTCCGTATAGAATGGCTCCGACCGAA
73704320 CTAAAAGAATTAAAGTCTCAGTTGCAAGAGTTGACCGATAGAGGCTTTGCTAGACCGAGTTTTTC
261 CTAAAAGAATTAAAGTCTCAGTTGCAAGAGTTGACCGATAGAGGCTTTGCTAGACCGAGTTTTTC
*
73704385 ACCTTGGGTTGCTCCAGTTCTGTTTATGAAAAAAGAAAGATGGTACGATGAGAATGTGCATATAT
326 ACCTTAGGTTGCTCCAGTTCTGTTTATGAAAAAAGAAAGATGGTACGATGAGAATGTGCATATAT
*
73704450 TATCGTTAGTTGAACAAGGTGACTATCAAGAATAAATACCCTTTGCCCTGAATTGATGACTTTTT
391 TATCGTTAGTTGAACAAGGTGACTATCAAGAACAAATACCCTTTGCCCTGAATTGATGACTTTTT
73704515 TTTATCAATTAAAAGGAGCTACTGTATTTTCAAAGATAGATTTGAGAGTAGGCTTTATCAGTTGC
456 TTTATCAATTAAAAGGAGCTACTGTATTTTCAAAGATAGATTTGAGAGTAGGCTTTATCAGTTGC
* * * * *
73704580 GAGTGAAAGACTCAGACATTCTGAAAATTGCATTTAGAACGAGGTACGACCACTATGAATTCTTA
521 AAGTGAAAGACTCAAACATTCTGAAAATTGCATTCAAAACGAGGTACGACCACTATGAATTCCTA
73704645 GTTATGCCTTTCAAATTAACAAATGCACCTTCTATCTTTAATGATTTGATGAACATAATTTTCAG
586 GTTATGCCTTTCAAATTAACAAATGCACCTTCTATCTTTAATGATTTGATGAACATAATTTTCAG
* * * *
73704710 ACCATATTTAGATCGATTTGTTGTTGTATTAGTTGATGACATATTGATTTATTCGCGTGATGAAT
651 ACCATATTTAGATCGATTTATTATTGTATTAGTTGATGACATATAGATTTATTCGCGTGATAAAT
73704775 TCGAGCATGCCGAGAATCTAAGAATAGTACTACAAACTTTGCGTGATAAGCAATTGTATATGAAG
716 TCGAGCATGCCGAGAATCTAAGAATAGTACTACAAACTTTGCGTGATAAGCAATTGTATAT-AAG
* *
73704840 TTTAGCAAATGTGAATTCTGGTTACGAGAAGTTAGTTTTCTGGGTCATATTGTATCAGTATCAGG
780 TTTAGCAAATGTGAATTATGGTTACGAGAAGTTAGTTTTCTGGGCCATATTGTATCAGTATCAGG
73704905 TGTTCGATTGATCCGAGCAAAATTTCAGCTATTTCGGATTGAAAGCCTCCGAGAAATGTCTCTGA
845 TGTTCGATTGATCCGAGCAAAATTTCAGCTATTTCGGATTGAAAGCCTCCGAGAAATGTCTCTGA
*
73704970 AGCCTGCAGTTTTTTGGGACTTGCTGGTTATTATAGAAGGTTCGTAAAAGG
910 AGCCTGCAGTTTTTTGGGACTTGCTGGTTATTATAGAAGGTTCATAAAAGG
* *
73705021 ATGGGTTACCAACTATGATTTCATCAATGAAAGCTCTGAATATTATGAGAAAAGGTTGTGAAGCT
1 ATGGGTTACCAACTATAATTTCATCAATAAAAGCTCTGAATATTATGAGAAAAGGTTGTGAAGCT
73705086 TACTTTGCCTATGTGATTGATTCAAAAGTGTCAGAAAAGAGAGTTGAATTAGTACCTATTGTCTG
66 TACTTTGCCTATGTGATTGATTCAAAAGTGTCAGAAAAGAGAGTTGAATTAGTACCTATTGTCTG
* * *
73705151 TGAATTCCATGATGTGTTTCCTGATGAACTTTCGGGATTACCTCCGATACGAGAAGTTGAATTTG
131 TGAATTCCATAATGCGTTTCCTGACGAACTTTCGGGATTACCTCCGATACGAGAAGTTGAATTTG
* *
73705216 GCATTAAGTTAATACCGGGAACTACTCTGATTTTGATAGCTCCGTATAGAATGGCTCCGACCGAA
196 GCATTAAGTTAATACCGGGAACTACTCTAATTTCGATAGCTCCGTATAGAATGGCTCCGACCGAA
73705281 CTAAAAGAATTAAAGTCTCAGTTGCAAGAGTTGACCGATAGAGGCTTTGCTAGACCGAGTTTTTC
261 CTAAAAGAATTAAAGTCTCAGTTGCAAGAGTTGACCGATAGAGGCTTTGCTAGACCGAGTTTTTC
*
73705346 ACCTTAGGTTGCTCCAGTTCTGTTTATGAAAAAAGAAAGATGGTATGATGAGAATGTGCATATAT
326 ACCTTAGGTTGCTCCAGTTCTGTTTATGAAAAAAGAAAGATGGTACGATGAGAATGTGCATATAT
*
73705411 TATCGTTAGTTGAATAAGGTGACTATCAAGAACAAATACCCTTTGCCCTGAATTGATGA-TTTTT
391 TATCGTTAGTTGAACAAGGTGACTATCAAGAACAAATACCCTTTGCCCTGAATTGATGACTTTTT
* * * *
73705475 TTTATCAATTGAAAGGAGCTACTGTATTTTCGAATATAGATTTGAGATTAGGCTTTATCAGTTGC
456 TTTATCAATTAAAAGGAGCTACTGTATTTTCAAAGATAGATTTGAGAGTAGGCTTTATCAGTTGC
73705540 AAGTGAAAGACTCAAACATTCTGAAAATTGCATTCAAAACGAGGTACGACCACTATGAATTCCTA
521 AAGTGAAAGACTCAAACATTCTGAAAATTGCATTCAAAACGAGGTACGACCACTATGAATTCCTA
*
73705605 GTTATGCCTTTCAAATTAACAAATGCACCTTTTATCTTTAATGATTTGATGAACATAATTTTCAG
586 GTTATGCCTTTCAAATTAACAAATGCACCTTCTATCTTTAATGATTTGATGAACATAATTTTCAG
73705670 ACCATATTTAGATCGATTTATTATTGTATTAGTTGATGACATATAGATTTATTCGCGTGATAAAT
651 ACCATATTTAGATCGATTTATTATTGTATTAGTTGATGACATATAGATTTATTCGCGTGATAAAT
*
73705735 TCGAGCATGCCGAGAATCTGAGAATAGTACTACAAACTTTGCGTGATAAGCAATTGTATGCAT-A
716 TCGAGCATGCCGAGAATCTAAGAATAGTACTACAAACTTTGCGTGATAAGCAATTGTAT--ATAA
73705799 GTTTAGCAAATGTGAATTATGGTTACGAGAAGTTAGTTTTCTGGGCCATATTGTATCAGTATCAG
779 GTTTAGCAAATGTGAATTATGGTTACGAGAAGTTAGTTTTCTGGGCCATATTGTATCAGTATCAG
* * *
73705864 GTGTTTGATTGATCCGAGTAAAATTTCAGCTATTTCGGATTGGAAGCCTCCGAGAAATGTCTCTG
844 GTGTTCGATTGATCCGAGCAAAATTTCAGCTATTTCGGATTGAAAGCCTCCGAGAAATGTCTCTG
*
73705929 AAGTCTGCAGTTTTTTGGGACTTGCTGGTTATTATAGAAGGTTCATAAAAGG
909 AAGCCTGCAGTTTTTTGGGACTTGCTGGTTATTATAGAAGGTTCATAAAAGG
73705981 CTTTTCAATG
Statistics
Matches: 918, Mismatches: 40, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
960 485 0.53
961 431 0.47
962 2 0.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.34
Consensus pattern (960 bp):
ATGGGTTACCAACTATAATTTCATCAATAAAAGCTCTGAATATTATGAGAAAAGGTTGTGAAGCT
TACTTTGCCTATGTGATTGATTCAAAAGTGTCAGAAAAGAGAGTTGAATTAGTACCTATTGTCTG
TGAATTCCATAATGCGTTTCCTGACGAACTTTCGGGATTACCTCCGATACGAGAAGTTGAATTTG
GCATTAAGTTAATACCGGGAACTACTCTAATTTCGATAGCTCCGTATAGAATGGCTCCGACCGAA
CTAAAAGAATTAAAGTCTCAGTTGCAAGAGTTGACCGATAGAGGCTTTGCTAGACCGAGTTTTTC
ACCTTAGGTTGCTCCAGTTCTGTTTATGAAAAAAGAAAGATGGTACGATGAGAATGTGCATATAT
TATCGTTAGTTGAACAAGGTGACTATCAAGAACAAATACCCTTTGCCCTGAATTGATGACTTTTT
TTTATCAATTAAAAGGAGCTACTGTATTTTCAAAGATAGATTTGAGAGTAGGCTTTATCAGTTGC
AAGTGAAAGACTCAAACATTCTGAAAATTGCATTCAAAACGAGGTACGACCACTATGAATTCCTA
GTTATGCCTTTCAAATTAACAAATGCACCTTCTATCTTTAATGATTTGATGAACATAATTTTCAG
ACCATATTTAGATCGATTTATTATTGTATTAGTTGATGACATATAGATTTATTCGCGTGATAAAT
TCGAGCATGCCGAGAATCTAAGAATAGTACTACAAACTTTGCGTGATAAGCAATTGTATATAAGT
TTAGCAAATGTGAATTATGGTTACGAGAAGTTAGTTTTCTGGGCCATATTGTATCAGTATCAGGT
GTTCGATTGATCCGAGCAAAATTTCAGCTATTTCGGATTGAAAGCCTCCGAGAAATGTCTCTGAA
GCCTGCAGTTTTTTGGGACTTGCTGGTTATTATAGAAGGTTCATAAAAGG
Found at i:73712095 original size:59 final size:59
Alignment explanation
Indices: 73712003--73712120 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
73711993 TATTTGAAAC
73712003 AAATGGCATAGGCATTGAAGCCTTGTACATGGAGATATCTAATTCGTACTGAATAGAGG
1 AAATGGCATAGGCATTGAAGCCTTGTACATGGAGATATCTAATTCGTACTGAATAGAGG
*
73712062 AAATGGCATAGGCATTGAAGCCTTGTACATGGAGATATCTAATTCGTACTGCATAGAGG
1 AAATGGCATAGGCATTGAAGCCTTGTACATGGAGATATCTAATTCGTACTGAATAGAGG
73712121 TCAGAGTAGT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (59 bp):
AAATGGCATAGGCATTGAAGCCTTGTACATGGAGATATCTAATTCGTACTGAATAGAGG
Found at i:73714214 original size:74 final size:74
Alignment explanation
Indices: 73714109--73714255 Score: 267
Period size: 74 Copynumber: 2.0 Consensus size: 74
73714099 ATTTCTATGG
* *
73714109 ATCAAGTCAAATGAATAAATCGTCTAATTCAGAGTCAAATAACAAGTGAAGTCTAGGTGGATTTT
1 ATCAAGTCAAATAAATAAATCGTCTAATTCAGAGTCAAATAACAAGTAAAGTCTAGGTGGATTTT
73714174 TCCTTAGGA
66 TCCTTAGGA
*
73714183 ATCAAGTCAAATAAATAAATCGTCTAATTCAGTGTCAAATAACAAGTAAAGTCTAGGTGGATTTT
1 ATCAAGTCAAATAAATAAATCGTCTAATTCAGAGTCAAATAACAAGTAAAGTCTAGGTGGATTTT
73714248 TCCTTAGG
66 TCCTTAGG
73714256 TATTGTCTTA
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 70 1.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.31
Consensus pattern (74 bp):
ATCAAGTCAAATAAATAAATCGTCTAATTCAGAGTCAAATAACAAGTAAAGTCTAGGTGGATTTT
TCCTTAGGA
Found at i:73719017 original size:49 final size:49
Alignment explanation
Indices: 73718956--73719790 Score: 1670
Period size: 49 Copynumber: 17.0 Consensus size: 49
73718946 CTCCACAGGG
73718956 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
1 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
73719005 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
1 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
73719054 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
1 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
73719103 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
1 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
73719152 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
1 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
73719201 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
1 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
73719250 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
1 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
73719299 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
1 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
73719348 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
1 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
73719397 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
1 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
73719446 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
1 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
73719495 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
1 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
73719544 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
1 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
73719593 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
1 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
73719642 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
1 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
73719691 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
1 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
73719740 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
1 TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
73719789 TA
1 TA
73719791 CCCTCCTCAG
Statistics
Matches: 786, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 786 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (49 bp):
TATCTCGAGCATGCTACATATGAGGATGATCGAGAAATGATGTGGAACC
Found at i:73720536 original size:26 final size:26
Alignment explanation
Indices: 73720507--73720561 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
73720497 ACTCAAGGAG
73720507 TTCATTCATCATTCAGGAAGTTTCAC
1 TTCATTCATCATTCAGGAAGTTTCAC
73720533 TTCATTCATCATTCAGGAAGTTTCAC
1 TTCATTCATCATTCAGGAAGTTTCAC
73720559 TTC
1 TTC
73720562 TCTCCTTATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.24, G:0.11, T:0.40
Consensus pattern (26 bp):
TTCATTCATCATTCAGGAAGTTTCAC
Found at i:73722155 original size:42 final size:42
Alignment explanation
Indices: 73722105--73722213 Score: 121
Period size: 43 Copynumber: 2.6 Consensus size: 42
73722095 TCGATACTTC
* *
73722105 TGTCCCAGACAGGGTCTTACACGAAATCATATAT-GATGCCAA
1 TGTCCCAGACACGGTCTTACACGAAATCATA-ATCGAAGCCAA
* * * * **
73722147 TGTCCCAGACATGGTCTTATACTTAAATCTTAATCGAAGCCTG
1 TGTCCCAGACACGGTCTTACAC-GAAATCATAATCGAAGCCAA
73722190 TGTCCCAGACACGGTCTTACACGA
1 TGTCCCAGACACGGTCTTACACGA
73722214 TGTCTCAGAC
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 23 0.42
43 32 0.58
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (42 bp):
TGTCCCAGACACGGTCTTACACGAAATCATAATCGAAGCCAA
Found at i:73728185 original size:24 final size:24
Alignment explanation
Indices: 73728151--73728201 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
73728141 ATGTATCGGC
*
73728151 AAAAGCCGAAATGCCAAAAAGCCA
1 AAAAGCCGAAATACCAAAAAGCCA
* * *
73728175 AAAAGCTGAAATACCGAAAAGCTA
1 AAAAGCCGAAATACCAAAAAGCCA
73728199 AAA
1 AAA
73728202 GTTCGGGTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.57, C:0.20, G:0.16, T:0.08
Consensus pattern (24 bp):
AAAAGCCGAAATACCAAAAAGCCA
Found at i:73728493 original size:28 final size:29
Alignment explanation
Indices: 73728427--73728496 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
73728417 ATGTGACTGA
*
73728427 GCCTAACGGGCCATATAAATATGATTTGG
1 GCCTAATGGGCCATATAAATATGATTTGG
*
73728456 GCCTAATGGGCCATATGAATATGA-TTGG
1 GCCTAATGGGCCATATAAATATGATTTGG
* *
73728484 GCTTAGTGGGCCA
1 GCCTAATGGGCCA
73728497 AATATAGGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 15 0.41
29 22 0.59
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (29 bp):
GCCTAATGGGCCATATAAATATGATTTGG
Found at i:73731410 original size:50 final size:50
Alignment explanation
Indices: 73731356--73731679 Score: 290
Period size: 50 Copynumber: 6.4 Consensus size: 50
73731346 TAAGACAGTT
* *
73731356 TTAGGTCATGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG
* * * ** * *
73731406 TTAGGTCGCATGTGTAGTACTAAGTGTAGGCTACTATACGTACCCGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG
* * * * * * *
73731456 TTTTGATCACGTGTGTAGTACTAAGTGCATGCTACTATATCTATCAGATGG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG
* * * *
73731507 TAAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCGGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG
* * * ** * *
73731557 ATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCG-TTAAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATT--G
* * * ** * *
73731608 TTCGATCACGTGTGTAGTACTAAGTGCAAGCTACTGCGTGTATCAGATCG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG
* *
73731658 ATAAGTCACGTGTGTAGTACTA
1 TTAGGTCACGTGTGTAGTACTA
73731680 CGTCACGTGT
Statistics
Matches: 216, Mismatches: 54, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
49 2 0.01
50 140 0.65
51 73 0.34
52 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG
Found at i:73731582 original size:151 final size:152
Alignment explanation
Indices: 73731358--73731679 Score: 459
Period size: 151 Copynumber: 2.1 Consensus size: 152
73731348 AGACAGTTTT
* * * * *
73731358 AGGTCATGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAG
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTGATAGGTCGCATGTGTAG
* * ** * *
73731423 TACTAAGTGTAGGCTACTATACGTACCCGATAGTTTTGATCACGTGTGTAGTACTAAGTGCATGC
66 TACTAAGTGCAGGCTACTATACATACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAAGC
* *
73731488 TACTATATCTATCAGAT-GGTA
131 TACTACATCTATCAGATCGATA
*
73731509 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCGGATTGATAGGTCGCATGTGTAG
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTGATAGGTCGCATGTGTAG
* *
73731574 TACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAAGC
66 TACTAAGTGCAGGCTACTATACATACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAAGC
* * *
73731639 TACTGCGTGTATCAGATCGATA
131 TACTACATCTATCAGATCGATA
73731661 A-GTCACGTGTGTAGTACTA
1 AGGTCACGTGTGTAGTACTA
73731680 CGTCACGTGT
Statistics
Matches: 151, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
151 147 0.97
152 4 0.03
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (152 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTGATAGGTCGCATGTGTAG
TACTAAGTGCAGGCTACTATACATACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAAGC
TACTACATCTATCAGATCGATA
Found at i:73731686 original size:19 final size:19
Alignment explanation
Indices: 73731662--73731698 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
73731652 AGATCGATAA
73731662 GTCACGTGTGTAGTACTAC
1 GTCACGTGTGTAGTACTAC
73731681 GTCACGTGTGTAGTACTA
1 GTCACGTGTGTAGTACTA
73731699 AGTGCAGGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (19 bp):
GTCACGTGTGTAGTACTAC
Found at i:73731724 original size:69 final size:69
Alignment explanation
Indices: 73731613--73731748 Score: 200
Period size: 69 Copynumber: 2.0 Consensus size: 69
73731603 TTAACTTCGA
* * * *
73731613 TCACGTGTGTAGTACTAAGTGCAAGCTACTGCGTGTATCAGATCGATAAGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCCACTACGTGTACCAGATCGATAAGTCACATGTGTAGTAC
73731678 TACG
66 TACG
* * * *
73731682 TCACGTGTGTAGTACTAAGTGCAGGCCACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCCACTACGTGTACCAGATCGATAAGTCACATGTGTAGTAC
73731747 TA
66 TA
73731749 AGTGCAGGCT
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
69 59 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (69 bp):
TCACGTGTGTAGTACTAAGTGCAAGCCACTACGTGTACCAGATCGATAAGTCACATGTGTAGTAC
TACG
Found at i:73731985 original size:16 final size:16
Alignment explanation
Indices: 73731964--73731995 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
73731954 AGAATGGAGT
73731964 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
73731980 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
73731996 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:73738570 original size:50 final size:50
Alignment explanation
Indices: 73738466--73738803 Score: 338
Period size: 50 Copynumber: 6.7 Consensus size: 50
73738456 AGAACATATA
* *
73738466 TGTAGTACTATGTGCAGGCTACTATGTGTGTAAGACAG-TT-TTAGGTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTA--TGTGT-A-CCAGATTGTTAGGTCACGTG
* ** *
73738518 TGTAGTACTAAGTGTAGGCTACTATGTGTAAGAGATTGTTAGGTCACATG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACGTG
* * * ** * * * *
73738568 TGTAGTACTAAGTACAGGCGACCATGCATACCCGATAGTTTTGATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TTAGGTCACGTG
* * * *
73738619 TGTAGTACTAAGTACAGGCTACTATGTGTATCAGATGGTTAAGTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACGTG
* * * *
73738669 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGATAAGTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACGTG
** * *
73738719 TGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACGTG
* * **
73738769 TGTAGTACTCAGTGTAGGCTACTATGCATACCAGA
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
73738804 GAGCTTCGAT
Statistics
Matches: 238, Mismatches: 45, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
48 3 0.01
49 3 0.01
50 170 0.71
51 40 0.17
52 22 0.09
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (50 bp):
TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACGTG
Found at i:73739024 original size:16 final size:16
Alignment explanation
Indices: 73739003--73739034 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
73738993 AGAATGGAGT
73739003 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
73739019 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
73739035 TAAAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:73745110 original size:10 final size:10
Alignment explanation
Indices: 73745095--73745119 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
73745085 ATACTAAATC
73745095 AAATGAATAG
1 AAATGAATAG
73745105 AAATGAATAG
1 AAATGAATAG
73745115 AAATG
1 AAATG
73745120 GTGAAAATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (10 bp):
AAATGAATAG
Found at i:73746044 original size:22 final size:22
Alignment explanation
Indices: 73746016--73746063 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
73746006 TTAAAATACG
*
73746016 TTTGTCTTAGTAATAGTTTTAC
1 TTTGTCTTAGTAATAATTTTAC
*
73746038 TTTGTCTTGGTAATAATTTTAC
1 TTTGTCTTAGTAATAATTTTAC
73746060 TTTG
1 TTTG
73746064 CCTATGATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.21, C:0.08, G:0.15, T:0.56
Consensus pattern (22 bp):
TTTGTCTTAGTAATAATTTTAC
Found at i:73747752 original size:48 final size:48
Alignment explanation
Indices: 73747681--73747848 Score: 151
Period size: 48 Copynumber: 3.5 Consensus size: 48
73747671 TAAGATTTCA
* * *
73747681 TATAAAACCATGTTTGGGACATGGCCTCGGCATTGATATGAGATCCTG
1 TATAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGATCCTG
* * * *
73747729 TATAAGACCATGTCTAGGACATGGCATCAGCA-TCATTATGAGA-CCCG
1 TATAAGACCATGTCTGGGACATGGCATCGGCATTGA-TATGAGATCCTG
* * * * * * *
73747776 AATAAGACCATATCTGGGATATGGCATCGACATCGATTTGAGATCCTA
1 TATAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGATCCTG
* * * *
73747824 TGTAAGACCATATTTGGGATATGGC
1 TATAAGACCATGTCTGGGACATGGC
73747849 TTTGGCATCG
Statistics
Matches: 96, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
47 37 0.39
48 59 0.61
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (48 bp):
TATAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGATCCTG
Found at i:73756774 original size:37 final size:37
Alignment explanation
Indices: 73756724--73756795 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
73756714 TCAGTAGGAG
*
73756724 TAGGCATGTTACTTTCAACATCATCCGCCACTACTCT
1 TAGGCATGTTACTTTCAACATCATCCACCACTACTCT
73756761 TAGGCATGTTACTTTCAACATCATCCACCACTACT
1 TAGGCATGTTACTTTCAACATCATCCACCACTACT
73756796 TTATTGGGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.26, C:0.32, G:0.10, T:0.32
Consensus pattern (37 bp):
TAGGCATGTTACTTTCAACATCATCCACCACTACTCT
Found at i:73761107 original size:48 final size:47
Alignment explanation
Indices: 73761018--73761321 Score: 417
Period size: 48 Copynumber: 6.5 Consensus size: 47
73761008 TATATGTGTG
*
73761018 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA-
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
* *
73761064 T-GT---G--GTATTCGGCTAATGTGAAATATGTATGAGATATGTATA-
1 TGGTAAAGCCG-AAT-GGCTAGTGTGAAATATGTATGAGATATGTATAC
*
73761106 TGCGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATAC
1 T--GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
73761155 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
1 -TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
73761203 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
1 -TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
* * *
73761251 GTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATATG
1 -TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA-C
73761300 TGGTAAAGCCGAATGGCTAGTG
1 TGGTAAAGCCGAATGGCTAGTG
73761322 ATTCAGCTAG
Statistics
Matches: 236, Mismatches: 9, Indels: 24
0.88 0.03 0.09
Matches are distributed among these distances:
40 1 0.00
41 2 0.01
42 34 0.14
45 4 0.02
46 1 0.00
48 190 0.81
49 2 0.01
50 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAC
Found at i:73761216 original size:96 final size:96
Alignment explanation
Indices: 73761016--73761321 Score: 489
Period size: 96 Copynumber: 3.2 Consensus size: 96
73761006 TATATATGTG
* * **
73761016 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT--ATTC----G
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATACGTGGTAAAGCCGAATG
73761075 GCTAATGTGAAATATGTATGAGATATGTATA
66 GCTAATGTGAAATATGTATGAGATATGTATA
* *
73761106 TGCGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATACGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATACGTGGTAAAGCCGAATG
*
73761171 GCTAGTGTGAAATATGTATGAGATATGTATA
66 GCTAATGTGAAATATGTATGAGATATGTATA
*
73761202 CGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATACGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATACGTGGTAAAGCCGAATG
*
73761267 GCTAATGCGAAATATGTATGAGATATGTATA
66 GCTAATGTGAAATATGTATGAGATATGTATA
73761298 TGTGGTAAAGCCGAATGGCTAGTG
1 TGTGGTAAAGCCGAATGGCTAGTG
73761322 ATTCAGCTAG
Statistics
Matches: 197, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
90 50 0.25
92 2 0.01
96 145 0.74
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATACGTGGTAAAGCCGAATG
GCTAATGTGAAATATGTATGAGATATGTATA
Found at i:73761548 original size:37 final size:37
Alignment explanation
Indices: 73761498--73761593 Score: 147
Period size: 37 Copynumber: 2.6 Consensus size: 37
73761488 TATTCCGGGG
73761498 AAGACCCGATGACTACGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCTGGGT
* * *
73761535 AAGACCCGATGACTAAGTGTGGAGATTTTTTCTGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCTGGGT
* *
73761572 ATGACCCGATAACTACGTGTGG
1 AAGACCCGATGACTACGTGTGG
73761594 GGACTATTCA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCTGGGT
Found at i:73765411 original size:46 final size:47
Alignment explanation
Indices: 73765322--73765685 Score: 214
Period size: 49 Copynumber: 7.7 Consensus size: 47
73765312 TATGTGTGCT
*
73765322 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCACATT---TTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGG---CATTGAGATGAGAGCC
* * *
73765368 AGTGTAAGACATATCTGGGACAT-GCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCC
* * * *
73765414 AGTGTAAGACATGTCTGGAACAT-GCATCAGCCTCTAGATATGCA-AGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCAT-T-GAGATG-AGAGCC
* ** * * **
73765462 AGTGTAAGACTTGTCTGGGACATGGCATTAGC-TTGACAT--GTGTT
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCC
* * *
73765506 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCATTG--AGATGAGAGCC
* * * * * *
73765555 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTTCATATTTG-GAAGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGA--TGAG-AGCC
* * * * * *
73765604 AGTGTAAGACCTATCTAGGACATGGCATCGAC-TT-AGATGTGTGAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGA--TGAGAGCC
* * *
73765651 AGTGTAAGACCATGTTTGGAACATGGCATTGGCAT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCAT
73765686 CGTACCCTAT
Statistics
Matches: 254, Mismatches: 45, Indels: 35
0.76 0.13 0.10
Matches are distributed among these distances:
43 4 0.02
44 29 0.11
45 2 0.01
46 68 0.27
47 23 0.09
48 49 0.19
49 79 0.31
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCC
Found at i:73765509 original size:92 final size:92
Alignment explanation
Indices: 73765316--73765583 Score: 278
Period size: 92 Copynumber: 2.9 Consensus size: 92
73765306 GGGTGATATG
* * * *
73765316 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTTTGAGAGCCAGTGTAAGACATA
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCATC-GCCTCAATATGAGAGCCAGTGTAAGACATG
*
73765381 TCTGGGACAT-GCATCGGCATTGAGACGA
65 TCTGGGACATGGCATCAGCATT-AGACGA
* *
73765409 -GAGCTAGTGTAAGACATGTCTGGAACATGCATCAGCCTCTAGATATGCA-AGCCAGTGTAAGAC
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCATC-GCCTC-A-ATATG-AGAGCCAGTGTAAGAC
* *
73765472 TTGTCTGGGACATGGCATTAGC-TT-GAC-A
62 ATGTCTGGGACATGGCATCAGCATTAGACGA
* * * *
73765500 TGTGTTAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAGAGCCAGTGTAAGAC
1 TGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCG-CCTC-A-ATATGAGAGCCAGTGTAAGAC
*
73765565 CTGTCTGGGACATGGCATC
62 ATGTCTGGGACATGGCATC
73765584 GACCTTCATA
Statistics
Matches: 147, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
91 1 0.01
92 64 0.44
93 45 0.31
94 30 0.20
95 7 0.05
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (92 bp):
TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGCCTCAATATGAGAGCCAGTGTAAGACATGT
CTGGGACATGGCATCAGCATTAGACGA
Found at i:73769072 original size:49 final size:49
Alignment explanation
Indices: 73768996--73769092 Score: 158
Period size: 49 Copynumber: 2.0 Consensus size: 49
73768986 AAATCCAGAA
*
73768996 ACCGTTCTGACCCTGTCTCACAAGAACCTGAATATCTCTTAACATACTG
1 ACCGTTCTGACCCTGTCTCACAAGAACCTGAATATCTATTAACATACTG
** *
73769045 ACCGTTCTGGTCCTGTCTCACAGGAACCTGAATATCTATTAACATACT
1 ACCGTTCTGACCCTGTCTCACAAGAACCTGAATATCTATTAACATACT
73769093 CTCCGTATGG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.30
Consensus pattern (49 bp):
ACCGTTCTGACCCTGTCTCACAAGAACCTGAATATCTATTAACATACTG
Found at i:73770065 original size:39 final size:40
Alignment explanation
Indices: 73769948--73770169 Score: 248
Period size: 39 Copynumber: 5.7 Consensus size: 40
73769938 GCTCCTCGTT
* *
73769948 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
73769988 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
73770028 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
73770067 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGC-
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * *
73770105 CCAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
73770146 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73770170 CATCATTCAA
Statistics
Matches: 163, Mismatches: 10, Indels: 19
0.85 0.05 0.10
Matches are distributed among these distances:
37 2 0.01
38 10 0.06
39 90 0.55
40 58 0.36
41 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:73794347 original size:42 final size:41
Alignment explanation
Indices: 73794239--73794398 Score: 169
Period size: 42 Copynumber: 3.8 Consensus size: 41
73794229 GTACCAATGT
* *
73794239 CATATCCCAGATATGGTGTTACATGTAATCTCGTATCGATTC
1 CATATCCCAGATATGGTCTTACATG-AATCTCATATCGATTC
* * * *
73794281 CAATAGCCTAGCTATGGTCTTACATGAAGTCTCACATCGATGT-
1 C-ATATCCCAGATATGGTCTTACATGAA-TCTCATATCGAT-TC
*
73794324 CATATCCCAGATATGGTCTTACATGAAATCTCATATAGATTC
1 CATATCCCAGATATGGTCTTACATG-AATCTCATATCGATTC
* * *
73794366 CATATCCCAAATATGTTCTTACACGTAATCTCA
1 CATATCCCAGATATGGTCTTACATG-AATCTCA
73794399 GTAACCCTAA
Statistics
Matches: 98, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
41 1 0.01
42 63 0.64
43 33 0.34
44 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (41 bp):
CATATCCCAGATATGGTCTTACATGAATCTCATATCGATTC
Found at i:73798405 original size:46 final size:46
Alignment explanation
Indices: 73798352--73798488 Score: 222
Period size: 46 Copynumber: 3.0 Consensus size: 46
73798342 TATATATACA
* * *
73798352 CATCTCATACA-GATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACG-TTTCGCATTAGCCATTCGGCTTTACCACATATC
*
73798398 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCACATATC
73798444 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCACATAT
73798489 ATACACTTCC
Statistics
Matches: 85, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
46 84 0.99
47 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.10, T:0.34
Consensus pattern (46 bp):
CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:73798533 original size:22 final size:22
Alignment explanation
Indices: 73798508--73798580 Score: 53
Period size: 22 Copynumber: 3.2 Consensus size: 22
73798498 CACGTTCATA
73798508 ACATTGGCCATTCTGCCTTATC
1 ACATTGGCCATTCTGCCTTATC
*
73798530 ACATATATG-CATGT-T-CACATTCATC
1 ACAT-T-GGCCAT-TCTGC-C-TT-ATC
*
73798555 ACATTGGCCATTCGGCCTTATC
1 ACATTGGCCATTCTGCCTTATC
73798577 ACAT
1 ACAT
73798581 ATATGCATGT
Statistics
Matches: 39, Mismatches: 3, Indels: 18
0.65 0.05 0.30
Matches are distributed among these distances:
22 12 0.31
23 10 0.26
24 9 0.23
25 8 0.21
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (22 bp):
ACATTGGCCATTCTGCCTTATC
Found at i:73798533 original size:47 final size:47
Alignment explanation
Indices: 73798462--73798981 Score: 880
Period size: 47 Copynumber: 11.1 Consensus size: 47
73798452 ACACGTTTCG
* * * * * * * *
73798462 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATAA
1 CATTGGCCATTCGGCCTTATCACACATATGCA-TGTTCACATTCATCA
* *
73798509 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
73798556 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
73798603 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
73798650 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
73798697 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
73798744 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
73798791 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
73798838 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
73798885 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* * * **
73798932 CATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
73798979 CAT
1 CAT
73798982 AAAATCCTAA
Statistics
Matches: 457, Mismatches: 15, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
46 1 0.00
47 456 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
Found at i:73807929 original size:28 final size:28
Alignment explanation
Indices: 73807866--73807991 Score: 191
Period size: 28 Copynumber: 4.5 Consensus size: 28
73807856 ATATTAAGTC
* * *
73807866 CGCACACTCAGTGCTATATAA-CCAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
73807893 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
73807921 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
73807949 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
73807977 CGCACACTTACTGCT
1 CGCACACTTAGTGCT
73807992 GTACAATTTA
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
27 19 0.21
28 73 0.79
ACGTcount: A:0.33, C:0.29, G:0.11, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:73810240 original size:46 final size:47
Alignment explanation
Indices: 73810094--73810496 Score: 181
Period size: 46 Copynumber: 8.5 Consensus size: 47
73810084 TTTGTGCATT
* * * *
73810094 AGTGTAAGA-CATGTTTGGGACATGCATTGGCCAC-ATCATG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GATGTA-AGCC
* * * * * * *
73810140 AGTGTACGACCATGTCTGAGACATGGCATCGACATTGAGACG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGTA-AGCC
73810188 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
* * * * *
73810234 AGTGTAAGA-CATGTCTGTGACATTCATC-ACTTACGAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCC
* * ** * *
73810278 AGTGTAAGACCATGTCTGGAACATGGCATTGGCACGTATAGAGGT--GTC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGC-C-TCGAGATGTAAGCC
* * * * *
73810326 AGTGTAAGACCATGTCTGGGACATGGTATCGGCAC-GGATATGTGAGTGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGC-CTCGAGATGT-A-AGCC
* * * * * *
73810376 TGTGTAAGACCATGTCTAGGACATGGCGTCGGCCTCGA-TTTTGATAGTC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGT-A-AGCC
* * * * * *
73810425 AATGGAAGACAATGTCTGGGACATGGCATC-GACT-TA-ATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGAT-G-TAAGCC
73810472 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
73810497 GCATTGGCAA
Statistics
Matches: 273, Mismatches: 67, Indels: 34
0.73 0.18 0.09
Matches are distributed among these distances:
44 11 0.04
45 14 0.05
46 66 0.24
47 53 0.19
48 64 0.23
49 33 0.12
50 32 0.12
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
Found at i:73810392 original size:50 final size:48
Alignment explanation
Indices: 73810273--73810505 Score: 177
Period size: 48 Copynumber: 4.8 Consensus size: 48
73810263 CTTACGAGAT
* * *
73810273 GTGTCAGTGTAAGACCATGTCTGGAACATGGCATTGGCACGTATAGAG
1 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATAGAG
* *
73810321 GTGTCAGTGTAAGACCATGTCTGGGACATGGTATCGGCACGGATATGTG
1 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATA-GAG
* * * * ***
73810370 AGTG-CTTGTGTAAGACCATGTCTAGGACATGGCGTCGGC-CTCGATTTTG
1 -GTGTC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATAGAG
* * * * ** * *
73810419 ATAGTCAATGGAAGACAATGTCTGGGACATGGCATC-G-ACTTAATGGAT
1 GT-GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATAGAG
* * *
73810467 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCA
1 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
73810506 ATACACCCTA
Statistics
Matches: 144, Mismatches: 32, Indels: 17
0.75 0.17 0.09
Matches are distributed among these distances:
47 28 0.19
48 48 0.33
49 32 0.22
50 36 0.25
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (48 bp):
GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATAGAG
Found at i:73811709 original size:20 final size:21
Alignment explanation
Indices: 73811670--73811709 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
73811660 GTTATAATGA
*
73811670 CCACGCGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
*
73811691 CCACACGGGCTTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
73811710 ATTTCAAGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.07, C:0.40, G:0.30, T:0.23
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:73817735 original size:26 final size:25
Alignment explanation
Indices: 73817687--73817738 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
73817677 TTAACTCAAA
73817687 ATTTCACATTTCACAAATTAGTCCCT
1 ATTTCACATTTCACAAA-TAGTCCCT
73817713 ATTTCACATTTTCATCAAA-AGTCCCT
1 ATTTCACA-TTTCA-CAAATAGTCCCT
73817739 TAACAAAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 15 0.62
27 5 0.21
28 4 0.17
ACGTcount: A:0.31, C:0.27, G:0.04, T:0.38
Consensus pattern (25 bp):
ATTTCACATTTCACAAATAGTCCCT
Found at i:73821883 original size:16 final size:16
Alignment explanation
Indices: 73821838--73821883 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
73821828 TCAGCAGATC
73821838 TCGAAAAGCTGAAATG
1 TCGAAAAGCTGAAATG
* *
73821854 CCGAAATG-TCGAAATG
1 TCGAAAAGCT-GAAATG
73821870 TCGAAAAGCTGAAA
1 TCGAAAAGCTGAAA
73821884 ATTTGGCTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
15 1 0.04
16 22 0.92
17 1 0.04
ACGTcount: A:0.43, C:0.15, G:0.24, T:0.17
Consensus pattern (16 bp):
TCGAAAAGCTGAAATG
Found at i:73825023 original size:29 final size:29
Alignment explanation
Indices: 73824960--73825098 Score: 158
Period size: 28 Copynumber: 4.9 Consensus size: 29
73824950 AGCATGATTG
*
73824960 TAAATGTGATTTGGGCCTAAT-GGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCACA
* * **
73824988 TGAATGTGGTTTGGGTTTAATGGGCCACA
1 TAAATGTGATTTGGGCCTAATGGGCCACA
*
73825017 TAAATGTGATTTAGGCCTAATGGGCCACA
1 TAAATGTGATTTGGGCCTAATGGGCCACA
* *
73825046 TAAATGTGA-TTGGGCTTAATGGGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCACA
* * *
73825074 TGAATGAGA-TTGGGCCTAGTGGGCC
1 TAAATGTGATTTGGGCCTAATGGGCC
73825099 TTATACAGGT
Statistics
Matches: 93, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 54 0.58
29 39 0.42
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (29 bp):
TAAATGTGATTTGGGCCTAATGGGCCACA
Found at i:73825028 original size:57 final size:57
Alignment explanation
Indices: 73824960--73825098 Score: 174
Period size: 57 Copynumber: 2.5 Consensus size: 57
73824950 AGCATGATTG
* * * *
73824960 TAAATGTGATTTGGGCCTAAT-GGCCATATGAATGTGGTTTGGGTTTAATGGGCCACA
1 TAAATGTGATTTGGGCCTAATGGGCCACATAAATGT-GATTGGGCTTAATGGGCCACA
* *
73825017 TAAATGTGATTTAGGCCTAATGGGCCACATAAATGTGATTGGGCTTAATGGGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCACATAAATGTGATTGGGCTTAATGGGCCACA
* * *
73825074 TGAATGAGA-TTGGGCCTAGTGGGCC
1 TAAATGTGATTTGGGCCTAATGGGCC
73825099 TTATACAGGT
Statistics
Matches: 71, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
56 14 0.20
57 45 0.63
58 12 0.17
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (57 bp):
TAAATGTGATTTGGGCCTAATGGGCCACATAAATGTGATTGGGCTTAATGGGCCACA
Found at i:73828668 original size:47 final size:47
Alignment explanation
Indices: 73828614--73829603 Score: 1856
Period size: 47 Copynumber: 21.1 Consensus size: 47
73828604 GATTTTATGA
** * * * *
73828614 GATGAATGTGAATGTGTATATATGAGATAAGGCCTAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
73828661 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* *
73828708 GACGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
73828755 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
73828802 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
73828849 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
73828896 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
73828943 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
73828990 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
73829037 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
73829084 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
73829131 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
73829178 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
73829225 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
73829272 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
73829319 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
73829366 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
73829413 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* *
73829460 GACGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
73829507 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* *
73829554 GATGAATGTGAACATGCATATGTGTGATAA-GCTAGAATGGCTAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGC-CGAATGGCCAATGT
73829601 GAT
1 GAT
73829604 AAACGTGGAA
Statistics
Matches: 926, Mismatches: 16, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
46 2 0.00
47 924 1.00
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
Found at i:73834844 original size:51 final size:51
Alignment explanation
Indices: 73834768--73834869 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
73834758 AATACACAGA
73834768 TTGTTCAATTCAGTCCAAAAATCATATTATGGAAAGATTACATTTTTGCCC
1 TTGTTCAATTCAGTCCAAAAATCATATTATGGAAAGATTACATTTTTGCCC
73834819 TTGTTCAATTCAGTCCAAAAATCATATTATGGAAAGATTACATTTTTGCCC
1 TTGTTCAATTCAGTCCAAAAATCATATTATGGAAAGATTACATTTTTGCCC
73834870 CTAATATTTC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (51 bp):
TTGTTCAATTCAGTCCAAAAATCATATTATGGAAAGATTACATTTTTGCCC
Found at i:73844534 original size:9 final size:9
Alignment explanation
Indices: 73844520--73844545 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
73844510 TTTGGGGCTT
73844520 CCAACACTC
1 CCAACACTC
73844529 CCAACACTC
1 CCAACACTC
73844538 CCAACACT
1 CCAACACT
73844546 GGTTGTTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.54, G:0.00, T:0.12
Consensus pattern (9 bp):
CCAACACTC
Found at i:73862508 original size:30 final size:30
Alignment explanation
Indices: 73862472--73862554 Score: 159
Period size: 30 Copynumber: 2.8 Consensus size: 30
73862462 AATATGATGT
73862472 TAAGTGTGCGATTTAAACTAGCTTTGGCAC
1 TAAGTGTGCGATTTAAACTAGCTTTGGCAC
73862502 TAAGTGTGCGATTTAAACTAGCTTTGGCAC
1 TAAGTGTGCGATTTAAACTAGCTTTGGCAC
73862532 TAAGTGTGCGATTT-AACTAGCTT
1 TAAGTGTGCGATTTAAACTAGCTT
73862555 CGGCTATTTG
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
29 9 0.17
30 44 0.83
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.35
Consensus pattern (30 bp):
TAAGTGTGCGATTTAAACTAGCTTTGGCAC
Found at i:73862581 original size:39 final size:43
Alignment explanation
Indices: 73862526--73862623 Score: 125
Period size: 39 Copynumber: 2.3 Consensus size: 43
73862516 AAACTAGCTT
**
73862526 TGGCACTAAGTGTGCGAT-TTAAC-TAG-CTTCGGCTATTT-GA
1 TGGCACTAAGTGTGCGATACCAACTTAGTC-TCGGCTATTTAGA
73862566 -GGCACTAAGTGTGCGATACCAACTTAGTCTCGGCTATTTGAGA
1 TGGCACTAAGTGTGCGATACCAACTTAGTCTCGGCTATTT-AGA
73862609 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
73862624 AGAAATATTT
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
39 17 0.34
40 3 0.06
41 13 0.26
42 1 0.02
43 2 0.04
44 14 0.28
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (43 bp):
TGGCACTAAGTGTGCGATACCAACTTAGTCTCGGCTATTTAGA
Found at i:73869901 original size:30 final size:29
Alignment explanation
Indices: 73869865--73869925 Score: 113
Period size: 30 Copynumber: 2.1 Consensus size: 29
73869855 AATCGAAAGT
73869865 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTT-AACTAGC
73869895 TTTGGCACTAAGTGTGCGATTTAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAACTAGC
73869924 TT
1 TT
73869926 CGGCTGTTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.29
30 22 0.71
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGCGATTTAACTAGC
Found at i:73873359 original size:27 final size:27
Alignment explanation
Indices: 73873319--73873431 Score: 124
Period size: 27 Copynumber: 4.2 Consensus size: 27
73873309 CAGCATGGCT
* *
73873319 ACCAGA-ACAGATAATGTGACAGAGTC
1 ACCAGATACAGATAATGTGGCAGAGCC
*
73873345 ACCAGATATAGATAATCGTGGCAGAGCC
1 ACCAGATACAGATAAT-GTGGCAGAGCC
* *
73873373 ACCAGA-ACATAAATATGTGGCAGAGCC
1 ACCAGATACAGATA-ATGTGGCAGAGCC
*
73873400 ACCAGAT-CAGATAATTGTGGCATAGCC
1 ACCAGATACAGATAA-TGTGGCAGAGCC
73873427 ACCAG
1 ACCAG
73873432 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
26 7 0.10
27 49 0.67
28 17 0.23
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (27 bp):
ACCAGATACAGATAATGTGGCAGAGCC
Found at i:73873414 original size:54 final size:54
Alignment explanation
Indices: 73873319--73873431 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
73873309 CAGCATGGCT
* * *
73873319 ACCAGAACAGATAATGTGACAGAGTCACCAGATATAGATAATCGTGGCAGAGCC
1 ACCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCC
* * * *
73873373 ACCAGAACATAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCC
1 ACCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCC
73873427 ACCAG
1 ACCAG
73873432 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (54 bp):
ACCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCC
Found at i:73881203 original size:27 final size:26
Alignment explanation
Indices: 73881163--73881275 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
73881153 AGCATGGCTG
* * *
73881163 CCAGAACAAATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
73881189 CCAGATACAGATAATCGTGGCAAAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
73881217 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
** *
73881244 CCAGATTAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
73881271 CCAGA
1 CCAGA
73881276 CGCTTCCTCC
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 6 0.08
27 51 0.70
28 16 0.22
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:73881263 original size:54 final size:54
Alignment explanation
Indices: 73881163--73881275 Score: 149
Period size: 54 Copynumber: 2.1 Consensus size: 54
73881153 AGCATGGCTG
*
73881163 CCAGAACAAATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAAAGCCA
1 CCAGAACAAATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAAAGCCA
* * * *
73881217 CCAGAACAGAA-ATATGTGGCAGAGCCACCAGAT-TAGATAATTGTGGCATAGCCA
1 CCAGAACA-AATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAAAGCCA
73881271 CCAGA
1 CCAGA
73881276 CGCTTCCTCC
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
54 32 0.62
55 20 0.38
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.16
Consensus pattern (54 bp):
CCAGAACAAATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAAAGCCA
Found at i:73884142 original size:40 final size:40
Alignment explanation
Indices: 73884097--73884288 Score: 235
Period size: 40 Copynumber: 4.8 Consensus size: 40
73884087 ATAACCACAA
* * * *
73884097 GCACAATTGCCTTCGGGTCTTAACCTGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
*
73884137 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
* * *
73884177 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATATCAACTC
* *
73884217 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATATCAACTC
* * *
73884257 GCACAAATGCTTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT
73884289 CATTCAAATG
Statistics
Matches: 139, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 1 0.01
40 134 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
Found at i:73886588 original size:86 final size:86
Alignment explanation
Indices: 73886443--73886613 Score: 315
Period size: 86 Copynumber: 2.0 Consensus size: 86
73886433 TAACACCTTT
*
73886443 ACTAACGGAACCCTTTTGTTTCGCAACTCCTTCACTTCACGAGCTAGGATACGAATCGGTTCTTC
1 ACTAACGGAACCCTTTTGTTTCGCAACTCCTTCACTACACGAGCTAGGATACGAATCGGTTCTTC
73886508 TTCATAACTCAAGTCAGATTA
66 TTCATAACTCAAGTCAGATTA
* *
73886529 ACTAATGGAACCCTTTTGTTTCGCAACTCTTTCACTACACGAGCTAGGATACGAATCGGTTCTTC
1 ACTAACGGAACCCTTTTGTTTCGCAACTCCTTCACTACACGAGCTAGGATACGAATCGGTTCTTC
73886594 TTCATAACTCAAGTCAGATT
66 TTCATAACTCAAGTCAGATT
73886614 GAATTTCAAC
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
86 82 1.00
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (86 bp):
ACTAACGGAACCCTTTTGTTTCGCAACTCCTTCACTACACGAGCTAGGATACGAATCGGTTCTTC
TTCATAACTCAAGTCAGATTA
Found at i:73887218 original size:193 final size:193
Alignment explanation
Indices: 73886889--73887274 Score: 702
Period size: 193 Copynumber: 2.0 Consensus size: 193
73886879 TTTCAAATCC
**
73886889 GCATACGATTTCTGACGATCTGTGGCTGTCTTCAGACTTTCACGAATTATTTTTACTTTCTGTTC
1 GCATACGATTTCTGACGATCTGTGGCTGTCTTCAGACTTTCACGAATTACCTTTACTTTCTGTTC
*
73886954 GGCATCTTTAATCAAATCAACTCCGAAAATTTTACTTTCACCGAGCTCGGTCCAAAACAATGGTG
66 GACATCTTTAATCAAATCAACTCCGAAAATTTTACTTTCACCGAGCTCGGTCCAAAACAATGGTG
73887019 TACGGCATTTACGACCGTACAAAGCCTCGTAAGGTGCCATCTTAATACTTGATTGAAAACTAT
131 TACGGCATTTACGACCGTACAAAGCCTCGTAAGGTGCCATCTTAATACTTGATTGAAAACTAT
* *
73887082 GCATACGATTTTTGACGATCTGTGGCTG-CTTTCAGACTTTCACGGATTACCTTTACTTTCTGTT
1 GCATACGATTTCTGACGATCTGTGGCTGTC-TTCAGACTTTCACGAATTACCTTTACTTTCTGTT
73887146 CGACATCTTTAATCAAATCAACTCCGAAAATTTTACTTTCACCGAGCTCGGTCCAAAACAATGGT
65 CGACATCTTTAATCAAATCAACTCCGAAAATTTTACTTTCACCGAGCTCGGTCCAAAACAATGGT
*
73887211 GTACGGCATTTACGTCCGTACAAAGCCTCGTAAGGTGCCATCTTAATACTTGATTGAAAACTAT
130 GTACGGCATTTACGACCGTACAAAGCCTCGTAAGGTGCCATCTTAATACTTGATTGAAAACTAT
73887275 TGTTGTAAGC
Statistics
Matches: 186, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
192 1 0.01
193 185 0.99
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (193 bp):
GCATACGATTTCTGACGATCTGTGGCTGTCTTCAGACTTTCACGAATTACCTTTACTTTCTGTTC
GACATCTTTAATCAAATCAACTCCGAAAATTTTACTTTCACCGAGCTCGGTCCAAAACAATGGTG
TACGGCATTTACGACCGTACAAAGCCTCGTAAGGTGCCATCTTAATACTTGATTGAAAACTAT
Found at i:73891912 original size:41 final size:41
Alignment explanation
Indices: 73891823--73892158 Score: 397
Period size: 41 Copynumber: 8.2 Consensus size: 41
73891813 ATGTTTTTGT
* * * * *
73891823 GGCGCTTTTTGAAAAAACGCCGCTATAAAT-AGAGCAATAGC
1 GGCG-TTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGC
*
73891864 GGTGTTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGC
1 GGCGTTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGC
* * *
73891905 GGCGTTTTTCAAAAAACACCGATATAGATCTGAGCATTAGC
1 GGCGTTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGC
* *
73891946 GGCGTTTTTCAATAAGCGCCGCTATATATCTGAGCATTAGC
1 GGCGTTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGC
* *
73891987 GGCGTTTTTCAAAAAGCGCC-CTATAGATTTGAGCATTAAC
1 GGCGTTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGC
* * ** * *
73892027 GGCATTTTGCTTAAAGAGCCGCTATATATCTGAGCATTAGC
1 GGCGTTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGC
* ** * *
73892068 GGTGTTTTTCGTAAAGCGCCGCTATAGATGTGAGCACTAGC
1 GGCGTTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGC
* * *
73892109 GGCATTTTTCATAAAGCGCCGCTATAGATTTGAGCATTAGC
1 GGCGTTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGC
*
73892150 GGCGCTTTT
1 GGCGTTTTT
73892159 GGCAAAACGT
Statistics
Matches: 251, Mismatches: 42, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
40 54 0.22
41 197 0.78
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (41 bp):
GGCGTTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGC
Found at i:73892058 original size:122 final size:122
Alignment explanation
Indices: 73891840--73892152 Score: 398
Period size: 122 Copynumber: 2.6 Consensus size: 122
73891830 TTTGAAAAAA
* * *
73891840 CGCCGCTATAAATAGAGCAATAGCGGTGTTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGC
1 CGCCGCTATAAATTGAGCAATAGCGGCGTTTTTCAAAAAGCGCCGCTATAGATTTGAGCATTAGC
* *
73891905 GGCGTTTTTCAAAAAACACCGATATAGATCTGAGCATTAGCGGCGTTTTTCA-ATAAG
66 GGCATTTTGCAAAAAACACCGATATAGATCTGAGCATTAGCGGCGTTTTTCATA-AAG
* * *
73891962 CGCCGCTATATATCTGAGCATTAGCGGCGTTTTTCAAAAAGCGCC-CTATAGATTTGAGCATTAA
1 CGCCGCTATAAAT-TGAGCAATAGCGGCGTTTTTCAAAAAGCGCCGCTATAGATTTGAGCATTAG
* * * * * * *
73892026 CGGCATTTTGCTTAAAGA-GCCGCTATATATCTGAGCATTAGCGGTGTTTTTCGTAAAG
65 CGGCATTTTGC-AAAAAACACCGATATAGATCTGAGCATTAGCGGCGTTTTTCATAAAG
* * * *
73892084 CGCCGCTATAGATGTGAGCACTAGCGGCATTTTTCATAAAGCGCCGCTATAGATTTGAGCATTAG
1 CGCCGCTATAAAT-TGAGCAATAGCGGCGTTTTTCAAAAAGCGCCGCTATAGATTTGAGCATTAG
73892149 CGGC
65 CGGC
73892153 GCTTTTGGCA
Statistics
Matches: 166, Mismatches: 21, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
122 111 0.67
123 55 0.33
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (122 bp):
CGCCGCTATAAATTGAGCAATAGCGGCGTTTTTCAAAAAGCGCCGCTATAGATTTGAGCATTAGC
GGCATTTTGCAAAAAACACCGATATAGATCTGAGCATTAGCGGCGTTTTTCATAAAG
Found at i:73893949 original size:23 final size:21
Alignment explanation
Indices: 73893910--73893951 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
73893900 GTACTTAAGT
73893910 ACATTTTGTTGCATTTTTAGG
1 ACATTTTGTTGCATTTTTAGG
73893931 ACATTTTAGTTAGCATTTTTA
1 ACATTTT-GTT-GCATTTTTA
73893952 AAATTGCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 3 0.16
23 9 0.47
ACGTcount: A:0.24, C:0.10, G:0.14, T:0.52
Consensus pattern (21 bp):
ACATTTTGTTGCATTTTTAGG
Found at i:73901534 original size:22 final size:22
Alignment explanation
Indices: 73901508--73901552 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
73901498 TATAAAAGTG
73901508 TAAATTTAGAGTAAGTTAATGA
1 TAAATTTAGAGTAAGTTAATGA
*
73901530 TAAATTTCGAGTAAGTTAATGA
1 TAAATTTAGAGTAAGTTAATGA
73901552 T
1 T
73901553 GTTAATGAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.42, C:0.02, G:0.18, T:0.38
Consensus pattern (22 bp):
TAAATTTAGAGTAAGTTAATGA
Found at i:73904513 original size:29 final size:27
Alignment explanation
Indices: 73904495--73904564 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
73904485 ATATTAAGTC
73904495 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
73904522 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
73904550 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
73904565 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:73904558 original size:28 final size:28
Alignment explanation
Indices: 73904495--73904592 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
73904485 ATATTAAGTC
*
73904495 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
73904522 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
73904550 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
73904579 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73904593 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:73906294 original size:15 final size:15
Alignment explanation
Indices: 73906276--73906306 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
73906266 TATGATATTG
*
73906276 TATCTTATATTTCTT
1 TATCTTAGATTTCTT
73906291 TATCTTAGATTTCTT
1 TATCTTAGATTTCTT
73906306 T
1 T
73906307 GACCTGGACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.13, G:0.03, T:0.65
Consensus pattern (15 bp):
TATCTTAGATTTCTT
Found at i:73910017 original size:94 final size:94
Alignment explanation
Indices: 73909845--73910023 Score: 234
Period size: 94 Copynumber: 1.9 Consensus size: 94
73909835 CAGCCACAGT
* **
73909845 ATGAGAGCCAGTGTAAGACATGTCTGGACATGCAGTGGCCTCAAGATATTTAAGCCAGTGTAAGA
1 ATGAGAGCCAGTGTAAGACATGTCTGGACATGCAGTCGCCTCAAGATATACAAGCCAGTGTAAGA
*
73909910 CATGTCTGGGACAT-GCGTCGGTATTGAG
66 CATGTCTAGGACATGGCGTCGGTATTGAG
* * * *** *
73909938 ATGAGAGCTAGTGTAAGACATGTCTAGGGCATGCATTCGCCTTGCGATATACAAGCTAGTGTAAG
1 ATGAGAGCCAGTGTAAGACATGTCT-GGACATGCAGTCGCCTCAAGATATACAAGCCAGTGTAAG
*
73910003 ACCTGTCTAGGACATGGCGTC
65 ACATGTCTAGGACATGGCGTC
73910024 ATCTTGTGAT
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
93 24 0.33
94 43 0.60
95 5 0.07
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (94 bp):
ATGAGAGCCAGTGTAAGACATGTCTGGACATGCAGTCGCCTCAAGATATACAAGCCAGTGTAAGA
CATGTCTAGGACATGGCGTCGGTATTGAG
Found at i:73912041 original size:56 final size:56
Alignment explanation
Indices: 73911951--73912126 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
73911941 ACAAGGGATG
*
73911951 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
*
73912007 ATGCGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
73912063 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
73912119 ATGGGCAA
1 ATGGGCAA
73912127 TAAACTAATA
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
56 117 1.00
ACGTcount: A:0.45, C:0.10, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:73913394 original size:39 final size:40
Alignment explanation
Indices: 73913295--73913438 Score: 145
Period size: 40 Copynumber: 3.6 Consensus size: 40
73913285 CGAATGATGT
* * *
73913295 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAA
* * *
73913335 CCAGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-A
*
73913375 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAA
*
73913414 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
73913439 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
39 34 0.39
40 43 0.49
41 10 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAA
Found at i:73913452 original size:40 final size:39
Alignment explanation
Indices: 73913347--73913445 Score: 110
Period size: 39 Copynumber: 2.5 Consensus size: 39
73913337 AGACTAAGAT
** * *
73913347 CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAGC
1 CCGAAGGCATTTGAACGAGTTACTATA-ACCGGGCTAAGC
** *
73913386 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGTTACTATAACCGGGCTAAG-C
73913426 CCGAAGGCATTTGAACGAGT
1 CCGAAGGCATTTGAACGAGT
73913446 AGCTATATCC
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
39 33 0.62
40 20 0.38
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGAAGGCATTTGAACGAGTTACTATAACCGGGCTAAGC
Found at i:73913457 original size:79 final size:80
Alignment explanation
Indices: 73913294--73913444 Score: 182
Period size: 79 Copynumber: 1.9 Consensus size: 80
73913284 TCGAATGATG
*
73913294 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCAGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCAGACTAAGATCCGAAGGCATTT
**
73913359 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * * *
73913374 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCAGACTAAGAT-CCGAAGGCAT
73913436 TTGAACGAG
64 TTGAACGAG
73913445 TAGCTATATC
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.02
79 41 0.68
80 18 0.30
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCAGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:73915769 original size:74 final size:74
Alignment explanation
Indices: 73915648--73915796 Score: 210
Period size: 74 Copynumber: 2.0 Consensus size: 74
73915638 AATTTTAGGA
* *
73915648 AAAATTAGCAGATCTTAATTTAGAGTTCTGTAGCTCAAGTTATAAATAATTTAGTAATTATGACT
1 AAAATTAGCAGATCTTAATTTAGAGTTCTATAGCTCAAGTTATAAATAATTTAGTAACTATGACT
**
73915713 TGAGAAAAC
66 CAAGAAAAC
** * *
73915722 AAAATTAGTGGATCTTAATTTAGAGTT-TCATATCTCAAGTTATAAATAATTTAGTAACTATTAC
1 AAAATTAGCAGATCTTAATTTAGAGTTCT-ATAGCTCAAGTTATAAATAATTTAGTAACTATGAC
73915786 TCAAGAAAAC
65 TCAAGAAAAC
73915796 A
1 A
73915797 GCTTGACCAG
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
73 1 0.02
74 65 0.98
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.36
Consensus pattern (74 bp):
AAAATTAGCAGATCTTAATTTAGAGTTCTATAGCTCAAGTTATAAATAATTTAGTAACTATGACT
CAAGAAAAC
Found at i:73919314 original size:42 final size:42
Alignment explanation
Indices: 73919217--73919323 Score: 144
Period size: 42 Copynumber: 2.5 Consensus size: 42
73919207 AGCAAAATTA
73919217 TGCATACCCATGTGTGGAGAAGGAGCTAGCCCAACAGAATGG
1 TGCATACCCATGTGTGGAGAAGGAGCTAGCCCAACAGAATGG
** * *
73919259 TATAGACCTATGTGTGGAGAAGGAGC-AGGCCCAACAGAATGG
1 TGCATACCCATGTGTGGAGAAGGAGCTA-GCCCAACAGAATGG
* *
73919301 TGCATACCCATGTGCGGGGAAGG
1 TGCATACCCATGTGTGGAGAAGG
73919324 CGCAATCGAG
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 1 0.02
42 53 0.98
ACGTcount: A:0.30, C:0.20, G:0.34, T:0.17
Consensus pattern (42 bp):
TGCATACCCATGTGTGGAGAAGGAGCTAGCCCAACAGAATGG
Found at i:73925233 original size:13 final size:13
Alignment explanation
Indices: 73925215--73925239 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73925205 ATGGCTGTGT
73925215 TAGGGACACGGGA
1 TAGGGACACGGGA
73925228 TAGGGACACGGG
1 TAGGGACACGGG
73925240 CGTATGCCAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.16, G:0.48, T:0.08
Consensus pattern (13 bp):
TAGGGACACGGGA
Found at i:73936134 original size:50 final size:51
Alignment explanation
Indices: 73936074--73936203 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 51
73936064 TTCGTTTCCT
* * *
73936074 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCATATAATCACAT-AC
1 CGATGCCATAGCCCAGCTATGGTCTTACACAGAAGCACATAATCACATCAC
* *
73936124 CGATGTCATAGCCCAGCTATGGTCTTACATAGAAGCACATAATCACATCACAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACAGAAGCACATAATCACAT--CAC
*
73936177 CGATGCCATAGTCCAGCTATGGTCTTA
1 CGATGCCATAGCCCAGCTATGGTCTTA
73936204 TACAAAAATC
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
50 43 0.61
53 27 0.39
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (51 bp):
CGATGCCATAGCCCAGCTATGGTCTTACACAGAAGCACATAATCACATCAC
Found at i:73951103 original size:47 final size:49
Alignment explanation
Indices: 73950888--73951399 Score: 855
Period size: 49 Copynumber: 10.7 Consensus size: 49
73950878 CCAGGTGAAG
*
73950888 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
*
73950937 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
*
73950986 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
73951035 TTCACATTCATCACATCGGCCATTAGGCCTTATCACAT-T-TATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
* * * * * * *
73951082 TTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
*
73951129 TTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
73951178 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
73951227 TTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
73951274 TTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
73951321 TTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
73951368 TTCACATTCATCACATCGGCCATTAGGCCTTA
1 TTCACATTCATCACATCGGCCATTAGGCCTTA
73951400 CTATCATTTC
Statistics
Matches: 444, Mismatches: 15, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 212 0.48
48 1 0.00
49 230 0.52
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (49 bp):
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
Found at i:73951217 original size:192 final size:192
Alignment explanation
Indices: 73950888--73951399 Score: 893
Period size: 192 Copynumber: 2.7 Consensus size: 192
73950878 CCAGGTGAAG
*
73950888 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGT
1 TTCACATTCATCACGTCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACAT
*
73950953 CGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTA
64 CGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
73951018 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTTATACACT
129 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
* * * * * *
73951082 TTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTTCACATTCATCACATCG
1 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
*
73951147 GCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
66 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
73951212 ACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
131 ACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
*
73951274 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
1 TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
73951339 GCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
66 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
73951400 CTATCATTTC
Statistics
Matches: 300, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
190 43 0.14
192 227 0.76
194 30 0.10
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (192 bp):
TTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
ACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
Found at i:73957440 original size:46 final size:46
Alignment explanation
Indices: 73957293--73957463 Score: 211
Period size: 46 Copynumber: 3.7 Consensus size: 46
73957283 TTTGTGTGCT
* *
73957293 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGACAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGACAGCC
* * * * * * *
73957339 ATTGTAAGACCATGTCTGGAACATGGCATTGGCATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGACAGCC
73957387 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-ACAGCC
73957433 AGTGTAAGACATGTCTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
73957464 TACAAAATGT
Statistics
Matches: 106, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
46 56 0.53
47 27 0.25
48 22 0.21
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGACAGCC
Found at i:73967098 original size:40 final size:40
Alignment explanation
Indices: 73966976--73967103 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
73966966 TGTTCGGATG
* *
73966976 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGCGAGTAGCT
* *
73967016 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
* *
73967056 ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCT
*
73967096 ATATCCGG
1 ATAACCGG
73967104 TTAAATTCCG
Statistics
Matches: 74, Mismatches: 9, Indels: 10
0.80 0.10 0.11
Matches are distributed among these distances:
39 3 0.04
40 67 0.91
41 4 0.05
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCT
Found at i:73972131 original size:189 final size:189
Alignment explanation
Indices: 73971809--73972188 Score: 715
Period size: 189 Copynumber: 2.0 Consensus size: 189
73971799 GATTAGATAC
*
73971809 TATGAAAAGTTTTATGTGTGTATAGTATTAAAGAAAGACAACATTGTTACAGAGTGTAGCATATT
1 TATGAAAAGTTTTATGCGTGTATAGTATTAAAGAAAGACAACATTGTTACAGAGTGTAGCATATT
* *
73971874 TAAATAGTATGTTTCAAATATTCATTTTCTATATTGAAAACTTATTGTGTGATTAGCAATTCTGT
66 TAAATAGTATGTTTCAAATATTCAATTTCTATATTGAAAACTTATTGTGTGATTAGCAATTATGT
73971939 TATAAGATATTAAAATTGGTTATATGCCAGTTAAATAAAGCTAGATTGTGTTATTTTTG
131 TATAAGATATTAAAATTGGTTATATGCCAGTTAAATAAAGCTAGATTGTGTTATTTTTG
*
73971998 TATGAAAAGTTTTATGCGTGTATAGTATTAAAGAAAGACAACATTGTTACATAGTGTAGCATATT
1 TATGAAAAGTTTTATGCGTGTATAGTATTAAAGAAAGACAACATTGTTACAGAGTGTAGCATATT
73972063 TAAATAGTATGTTTCAAATATTCAATTTCTATATTGAAAACTTATTGTGTGATTAGCAATTATGT
66 TAAATAGTATGTTTCAAATATTCAATTTCTATATTGAAAACTTATTGTGTGATTAGCAATTATGT
*
73972128 TATAAGATATTAAAATTGGTTATATGCCGGTTAAATAAAGCTAGATTGTGTTATTTTTG
131 TATAAGATATTAAAATTGGTTATATGCCAGTTAAATAAAGCTAGATTGTGTTATTTTTG
73972187 TA
1 TA
73972189 ATATTGTTTT
Statistics
Matches: 186, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
189 186 1.00
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (189 bp):
TATGAAAAGTTTTATGCGTGTATAGTATTAAAGAAAGACAACATTGTTACAGAGTGTAGCATATT
TAAATAGTATGTTTCAAATATTCAATTTCTATATTGAAAACTTATTGTGTGATTAGCAATTATGT
TATAAGATATTAAAATTGGTTATATGCCAGTTAAATAAAGCTAGATTGTGTTATTTTTG
Found at i:73976844 original size:17 final size:16
Alignment explanation
Indices: 73976809--73976849 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 16
73976799 ACTCTTAGTC
73976809 TATTATTTTTTTCTCT
1 TATTATTTTTTTCTCT
73976825 TATTATTATTGTTT-TCT
1 TATTATT-TT-TTTCTCT
73976842 TATTATTT
1 TATTATTT
73976850 ATTTAGTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 8 0.35
17 12 0.52
18 3 0.13
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.73
Consensus pattern (16 bp):
TATTATTTTTTTCTCT
Found at i:73989434 original size:6 final size:6
Alignment explanation
Indices: 73989385--73989452 Score: 59
Period size: 6 Copynumber: 11.3 Consensus size: 6
73989375 TTGAGTCCGA
* * *
73989385 TTATTT TTATGT TTATGTT TT-TTT TTGTTT TTTTCTT TTA-TT TTATTT
1 TTATTT TTATTT TTAT-TT TTATTT TTATTT TTAT-TT TTATTT TTATTT
* *
73989433 TTATTT TGAGTT TTATTT TT
1 TTATTT TTATTT TTATTT TT
73989453 CTATTTTGAA
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
5 9 0.18
6 34 0.68
7 7 0.14
ACGTcount: A:0.12, C:0.01, G:0.07, T:0.79
Consensus pattern (6 bp):
TTATTT
Found at i:73989446 original size:31 final size:30
Alignment explanation
Indices: 73989388--73989459 Score: 76
Period size: 31 Copynumber: 2.3 Consensus size: 30
73989378 AGTCCGATTA
*
73989388 TTTTTATGTTTATGTTTTTTTTTGTTTT-TT
1 TTTTTAT-TTTATGTTTTTTTTAGTTTTATT
73989418 TCTTTTATTTTAT-TTTTATTTTGAGTTTTATT
1 T-TTTTATTTTATGTTTT-TTTT-AGTTTTATT
*
73989450 TTTCTATTTT
1 TTTTTATTTT
73989460 GAACTTTATA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
29 4 0.11
30 10 0.28
31 19 0.53
32 3 0.08
ACGTcount: A:0.11, C:0.03, G:0.07, T:0.79
Consensus pattern (30 bp):
TTTTTATTTTATGTTTTTTTTAGTTTTATT
Found at i:73989467 original size:20 final size:19
Alignment explanation
Indices: 73989426--73989468 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
73989416 TTTCTTTTAT
**
73989426 TTTA-TTTTTATTTTGAGT
1 TTTATTTTTTATTTTGAAC
73989444 TTTATTTTTCTATTTTGAAC
1 TTTATTTTT-TATTTTGAAC
73989464 TTTAT
1 TTTAT
73989469 ATTAATTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 4 0.19
19 4 0.19
20 13 0.62
ACGTcount: A:0.19, C:0.05, G:0.07, T:0.70
Consensus pattern (19 bp):
TTTATTTTTTATTTTGAAC
Found at i:74011643 original size:45 final size:47
Alignment explanation
Indices: 74011580--74011696 Score: 134
Period size: 50 Copynumber: 2.5 Consensus size: 47
74011570 GCTGAGAGCT
74011580 AGTGTAAGA-CATGTCTGGGACAAG-CATCGGCTAC-AACATGT-GTC
1 AGTGTAAGACCATGTCTGGGACAAGACATCGGC-ACGAACATGTAGTC
* * * *
74011624 AGTGTAAGACCATGTCTGGGACATGACATCTGCACGGATATGTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACAAGACATCGGCACGAACATGT---AGTC
74011674 AGTGTAAGACCATGTCTGGGACA
1 AGTGTAAGACCATGTCTGGGACA
74011697 TGGCATCGAC
Statistics
Matches: 62, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
44 9 0.15
45 16 0.26
46 11 0.18
50 26 0.42
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACAAGACATCGGCACGAACATGTAGTC
Found at i:74011683 original size:50 final size:47
Alignment explanation
Indices: 74011621--74011745 Score: 155
Period size: 50 Copynumber: 2.6 Consensus size: 47
74011611 TACAACATGT
74011621 GTCAGTGTAAGACCATGTCTGGGACATGACATCTGCACGGAT-ATGTGA-GA
1 GTCAGTGTAAGACCATGTCTGGGACATGACATC-G-AC--ATGATG-GATGA
* *
74011671 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGA
1 GTCAGTGTAAGACCATGTCTGGGACATGACATCGACATGATGGATGA
* *
74011718 GCCTGTGTAAGACCATGTCTGGGACATG
1 GTCAGTGTAAGACCATGTCTGGGACATG
74011746 GCATTGGCAT
Statistics
Matches: 69, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
46 3 0.04
47 31 0.45
48 2 0.03
49 1 0.01
50 32 0.46
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (47 bp):
GTCAGTGTAAGACCATGTCTGGGACATGACATCGACATGATGGATGA
Found at i:74011744 original size:47 final size:49
Alignment explanation
Indices: 74011623--74011749 Score: 163
Period size: 47 Copynumber: 2.6 Consensus size: 49
74011613 CAACATGTGT
* *
74011623 CAGTGTAAGACCATGTCTGGGACATGACATCTGCACGGATATGTGAGAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCTGCACGGA-ATGTGAGAGC
*
74011673 CAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTG-ATG-GATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCTGCAC-GGAATGTGA-GAGC
*
74011720 CTGTGTAAGACCATGTCTGGGACATGGCAT
1 CAGTGTAAGACCATGTCTGGGACATGGCAT
74011750 TGGCATTATA
Statistics
Matches: 71, Mismatches: 4, Indels: 7
0.87 0.05 0.09
Matches are distributed among these distances:
46 2 0.03
47 35 0.49
48 2 0.03
49 2 0.03
50 30 0.42
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCTGCACGGAATGTGAGAGC
Found at i:74012377 original size:13 final size:13
Alignment explanation
Indices: 74012359--74012384 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74012349 TGTGTAAATG
74012359 CCTTAGTTATGAT
1 CCTTAGTTATGAT
74012372 CCTTAGTTATGAT
1 CCTTAGTTATGAT
74012385 TGTTGGATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.46
Consensus pattern (13 bp):
CCTTAGTTATGAT
Found at i:74012961 original size:22 final size:21
Alignment explanation
Indices: 74012936--74012976 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
74012926 TCGAATTGGT
74012936 CACACG-GACGTGTTGCCCCTTC
1 CACACGAG-CGTG-TGCCCCTTC
74012958 CACACGAGCGTGTGCCCCT
1 CACACGAGCGTGTGCCCCT
74012977 GTGTCTTGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.39
22 10 0.56
23 1 0.06
ACGTcount: A:0.15, C:0.41, G:0.24, T:0.20
Consensus pattern (21 bp):
CACACGAGCGTGTGCCCCTTC
Found at i:74012975 original size:21 final size:22
Alignment explanation
Indices: 74012936--74012976 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
74012926 TCGAATTGGT
74012936 CACACGGACGTGTTGCCCCTTC
1 CACACGGACGTGTTGCCCCTTC
74012958 CACAC-GAGCGTG-TGCCCCT
1 CACACGGA-CGTGTTGCCCCT
74012977 GTGTCTTGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.15, C:0.41, G:0.24, T:0.20
Consensus pattern (22 bp):
CACACGGACGTGTTGCCCCTTC
Found at i:74017544 original size:5 final size:5
Alignment explanation
Indices: 74017534--74017558 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
74017524 AAAACTTTGG
74017534 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
74017559 TGTAAATGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:74027115 original size:39 final size:39
Alignment explanation
Indices: 74027067--74027382 Score: 632
Period size: 39 Copynumber: 8.1 Consensus size: 39
74027057 AATTATATTA
74027067 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
74027106 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
74027145 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
74027184 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
74027223 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
74027262 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
74027301 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
74027340 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
74027379 CCAG
1 CCAG
74027383 TGTCTTGCAT
Statistics
Matches: 277, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 277 1.00
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:74033384 original size:49 final size:49
Alignment explanation
Indices: 74033331--74033604 Score: 297
Period size: 49 Copynumber: 5.6 Consensus size: 49
74033321 ATATCAAAGT
* *
74033331 CGATGCCATGTCCCAAACAGGTCTTACATTGACTTTCATATATTGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATTGAGGC
* * *
74033380 CGATGTCGTGTCCCAGACAGGTCTTACACTGACTTTCATATATTGAGAC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATTGAGGC
* * *
74033429 CGATGTCGTGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATTGAGGC
* * * * * *
74033478 TGATGCCATGTCCAAGATAGGTCTTACACT-AGCTCTCATTTATTG-GTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CTTTCATATATTGAG-GC
* * * *
74033527 CGATTCCATATCCCAGACAGGTCTTACACT-AGCTTGT-ATATCTCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CTT-TCATATATTGAGGC
* *
74033576 TGATG-CATGTCCCAGACATGTCTTACACT
1 CGATGCCATGTCCCAGACAGGTCTTACACT
74033605 AGCTCTCGTC
Statistics
Matches: 191, Mismatches: 30, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
48 24 0.13
49 165 0.86
50 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATTGAGGC
Found at i:74033641 original size:46 final size:45
Alignment explanation
Indices: 74033577--74033742 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 45
74033567 TCTCGAGGCT
74033577 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAAGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCT-AAAGCC
74033623 GATGCATGTCCCAGACATGTCTT---CTAGCTCTCGTCTTAAAGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTC-TAAAGCC
* * * * *** *
74033666 GATGCATGTCCCAGACATGTCTTACACTGGTTCTCATAATGTGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGT-CTAAAGCC
*
74033712 GATGCATGTCCTAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
74033743 ACACATATCA
Statistics
Matches: 104, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
43 41 0.39
44 1 0.01
46 62 0.60
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTAAAGCC
Found at i:74033664 original size:43 final size:44
Alignment explanation
Indices: 74033577--74033690 Score: 194
Period size: 43 Copynumber: 2.6 Consensus size: 44
74033567 TCTCGAGGCT
74033577 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAAGCC
1 GATGCATGTCCCAGACATGTCTT--ACTAGCTCTCGTCTCAAAGCC
*
74033623 GATGCATGTCCCAGACATGTCTT-CTAGCTCTCGTCTTAAAGCC
1 GATGCATGTCCCAGACATGTCTTACTAGCTCTCGTCTCAAAGCC
74033666 GATGCATGTCCCAGACATGTCTTAC
1 GATGCATGTCCCAGACATGTCTTAC
74033691 ACTGGTTCTC
Statistics
Matches: 66, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
43 42 0.64
44 1 0.02
46 23 0.35
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACTAGCTCTCGTCTCAAAGCC
Found at i:74036326 original size:23 final size:23
Alignment explanation
Indices: 74036300--74036348 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
74036290 CACACTCCCA
74036300 TGTGGAAGTAAAGCACAAACTCG
1 TGTGGAAGTAAAGCACAAACTCG
* **
74036323 TGTGGAGGTAAAGCACACGCTCG
1 TGTGGAAGTAAAGCACAAACTCG
74036346 TGT
1 TGT
74036349 CCCTCACCCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.31, C:0.18, G:0.31, T:0.20
Consensus pattern (23 bp):
TGTGGAAGTAAAGCACAAACTCG
Found at i:74038427 original size:30 final size:30
Alignment explanation
Indices: 74038391--74038460 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 30
74038381 CTCATACTAG
74038391 CCCACATTTTCCTCCATTTCACATTTCTAC
1 CCCACATTTTCCTCCATTTCACATTTCTAC
*
74038421 CCCACATTTTCCTCTATTTCACATTTCTAC
1 CCCACATTTTCCTCCATTTCACATTTCTAC
74038451 CCCACATTTT
1 CCCACATTTT
74038461 ATACCTTTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.20, C:0.39, G:0.00, T:0.41
Consensus pattern (30 bp):
CCCACATTTTCCTCCATTTCACATTTCTAC
Found at i:74040124 original size:22 final size:22
Alignment explanation
Indices: 74040098--74040140 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
74040088 ATTTCCATCT
74040098 CAATTC-ATCAAAAAAATCATAA
1 CAATTCTA-CAAAAAAATCATAA
*
74040120 CAATTCTACAATAAAATCATA
1 CAATTCTACAAAAAAATCATA
74040141 TCATAAGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.26
Consensus pattern (22 bp):
CAATTCTACAAAAAAATCATAA
Found at i:74041591 original size:11 final size:11
Alignment explanation
Indices: 74041575--74041606 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
74041565 CTAATGTTCT
74041575 TTTTATTTTTC
1 TTTTATTTTTC
74041586 TTTTATTTTTC
1 TTTTATTTTTC
*
74041597 TTGTATTTTT
1 TTTTATTTTT
74041607 GGCACAAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.06, G:0.03, T:0.81
Consensus pattern (11 bp):
TTTTATTTTTC
Found at i:74059523 original size:40 final size:40
Alignment explanation
Indices: 74059449--74059550 Score: 138
Period size: 40 Copynumber: 2.6 Consensus size: 40
74059439 AACCCAAGTA
*
74059449 CCTTCGGGAT-TTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGCAACTAGCACAAATG
74059488 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAG-CAACTAGCACAAATG
* *
74059528 CCTTCGGGACTTAGCCCAGATAT
1 CCTTCGGGTCTTAGCCCGGATAT
74059551 NNNNNNNNNN
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
38 1 0.02
39 12 0.21
40 43 0.75
41 1 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:74063100 original size:49 final size:49
Alignment explanation
Indices: 74063030--74063153 Score: 230
Period size: 49 Copynumber: 2.5 Consensus size: 49
74063020 TGAGATCATG
*
74063030 TGTGTAGTACTAAGTGGAGGCTACTACGTGTACCAGACAGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACAGTTGGTCGCA
*
74063079 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACAGTTGGTCGCA
74063128 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
74063154 TGCGTACTAG
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 73 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACAGTTGGTCGCA
Found at i:74065676 original size:93 final size:93
Alignment explanation
Indices: 74065563--74065734 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
74065553 CGCCCATAAG
* *
74065563 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
74065628 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
74065656 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
74065721 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
74065735 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:74065731 original size:46 final size:46
Alignment explanation
Indices: 74065556--74065731 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
74065546 TGTAACCCGC
* * *
74065556 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
74065602 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
74065652 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
74065695 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
74065732 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:74073197 original size:46 final size:46
Alignment explanation
Indices: 74073130--74073396 Score: 471
Period size: 46 Copynumber: 5.8 Consensus size: 46
74073120 TGTAACCCGC
* * * * * *
74073130 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
74073176 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
74073222 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
74073268 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
74073314 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
74073360 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74073397 TGCCTAGTTA
Statistics
Matches: 214, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 214 1.00
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Done.