Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 219 of 297
Found at i:74418598 original size:37 final size:37
Alignment explanation
Indices: 74418557--74418628 Score: 128
Period size: 37 Copynumber: 1.9 Consensus size: 37
74418547 ACGGGATCAT
74418557 TATAAAATT-CAATATTAATACCCTTATGGTATTTTGG
1 TATAAAATTGC-ATATTAATACCCTTATGGTATTTTGG
74418594 TATAAAATTGCATATTAATACCCTTATGGTATTTT
1 TATAAAATTGCATATTAATACCCTTATGGTATTTT
74418629 CGAATGCCGA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
37 33 0.97
38 1 0.03
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.44
Consensus pattern (37 bp):
TATAAAATTGCATATTAATACCCTTATGGTATTTTGG
Found at i:74420866 original size:93 final size:93
Alignment explanation
Indices: 74420759--74420929 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
74420749 GCCCCTAAGT
* *
74420759 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74420824 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
74420852 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74420917 CGAGTTCGGATGC
66 CGAGTTCGGATGC
74420930 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:74420926 original size:46 final size:46
Alignment explanation
Indices: 74420754--74420926 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
74420744 AACCCGCCCC
* * * *
74420754 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
74420800 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
74420848 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
74420893 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74420927 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:74423976 original size:25 final size:25
Alignment explanation
Indices: 74423939--74423989 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
74423929 AAGGAATTCG
74423939 CACACACACAGTG-TCTCTAATCATT
1 CACACACACAGTGCTCT-TAATCATT
* * *
74423964 CACACTCATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTTAATCATT
74423989 C
1 C
74423990 GTTATTACAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.33
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Found at i:74424199 original size:40 final size:40
Alignment explanation
Indices: 74424169--74424557 Score: 562
Period size: 40 Copynumber: 9.7 Consensus size: 40
74424159 GCATGATTGT
* * * *
74424169 TCTTCGAGACCTAGCCCGGATATAACACCAGCACGAATGC
1 TCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
** *
74424209 TCTTCGGGGTTTAGCACGGATATATCACTAGCACGAATGC
1 TCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
* * * *
74424249 TCTTCGGAACTTAGTCCGGATACATCACTAGCATGAATGC
1 TCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
74424289 TCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
1 TCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
* * * * *
74424329 TCTTCGGAACTTAGTCTGGATACATCACTAGCATGAATGC
1 TCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
*
74424369 TCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATGC
1 TCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
* * *
74424409 TCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
1 TCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
*
74424449 TCTTCGGGACTTAGACCGGATATATCACTAGCACGAATGC
1 TCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
*
74424489 TCTTCGGGACTTAGCCCGGATATATCACTAGCACAAATGC
1 TCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
* *
74424529 CCTTCGAGACTTAGCCCGGATATATCACT
1 TCTTCGGGACTTAGCCCGGATATATCACT
74424558 CTCAATTCTC
Statistics
Matches: 309, Mismatches: 40, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 309 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
TCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC
Found at i:74426083 original size:47 final size:47
Alignment explanation
Indices: 74426012--74426341 Score: 561
Period size: 47 Copynumber: 7.0 Consensus size: 47
74426002 CCCTTCGGGA
* * * * * *
74426012 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74426059 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74426106 CTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74426153 CTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74426200 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74426247 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74426294 CTTATAACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74426341 C
1 C
74426342 ATACTATCAT
Statistics
Matches: 270, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 270 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74428610 original size:17 final size:19
Alignment explanation
Indices: 74428584--74428620 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
74428574 TGTAAAACCC
74428584 ATGAGTATGAACT-TTGGT
1 ATGAGTATGAACTCTTGGT
74428602 ATGAG-ATGAACTCTTGGT
1 ATGAGTATGAACTCTTGGT
74428620 A
1 A
74428621 AGAATGCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (19 bp):
ATGAGTATGAACTCTTGGT
Found at i:74432701 original size:44 final size:44
Alignment explanation
Indices: 74432615--74432701 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
74432605 GTACAACCTG
**
74432615 AGTCGGGGAAAGAGTTCGTAATTTTCAGTGATGCATTGTTGAAC
1 AGTCGGGGAAAGAGTTCGTAATTTTCAGTGATGCATCATTGAAC
* **
74432659 AGTCTGGGAAAGAGTTTTTAA-TTTCTAGTGATGCATCATTGAA
1 AGTCGGGGAAAGAGTTCGTAATTTTC-AGTGATGCATCATTGAA
74432702 TGGATTAGGA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 4 0.11
44 33 0.89
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.34
Consensus pattern (44 bp):
AGTCGGGGAAAGAGTTCGTAATTTTCAGTGATGCATCATTGAAC
Found at i:74435583 original size:48 final size:48
Alignment explanation
Indices: 74435518--74435785 Score: 278
Period size: 48 Copynumber: 5.6 Consensus size: 48
74435508 ACAACAAGAT
* * *** * *
74435518 GATGCCATGTCCTAGACAGGTCTTACACTAGCTTGTCTATCGCAAGGCT
1 GATG-CATGTCCCAGACATGTCTTACACTAGCTTAAATATCTCAAGGCC
* ** *
74435567 GATTCATGTCCCAGACATGTCTTACACTAGCTCT---CGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCT-TAAATATCTCAAGGCC
* * *
74435613 GATGCATGTCCCTGACATGTCTTACACTGGCTTAAATATCTTAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCTCAAGGCC
*
74435661 GATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCTCAAGGCC
* * * **
74435709 GATGCATGTCCAAGACATGTCTTACACTGGCTCT-CATAT-T-GTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCT-TAAATATCTCAAGGCC
*
74435755 GATGCATGTCCCAAACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
74435786 ACACATATCG
Statistics
Matches: 188, Mismatches: 26, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
45 1 0.01
46 69 0.37
47 1 0.01
48 112 0.60
49 5 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCTCAAGGCC
Found at i:74435636 original size:94 final size:93
Alignment explanation
Indices: 74435518--74435785 Score: 274
Period size: 94 Copynumber: 2.8 Consensus size: 93
74435508 ACAACAAGAT
* * * * *
74435518 GATGCCATGT-CCTAGACAGGTCTTACACTAGCTTGTCTATCGCAAGGCTGATTCATGTCCCAGA
1 GATG-CATGTCCCT-GACATGTCTTACACTGGCTTATCTATCG-AAGGCCGATGCATGTCCCAGA
* *
74435582 CATGTCTTACACTAGCTCT-CGTCTCAATGCC
63 CATGTCTTACACTAGCT-TACATCTCAAGGCC
** *
74435613 GATGCATGTCCCTGACATGTCTTACACTGGCTTAAATATCTTAAGGCCGATGCATGTCCCAGACA
1 GATGCATGTCCCTGACATGTCTTACACTGGCTTATCTATC-GAAGGCCGATGCATGTCCCAGACA
* *
74435678 TGTCTTACACTAGCTTAAATATCTCGAGGCC
65 TGTCTTACACTAGCTT--ACATCTCAAGGCC
** * * * *
74435709 GATGCATGTCCAAGACATGTCTTACACTGGC-TCTCATATTG-TGGCCGATGCATGTCCCAAACA
1 GATGCATGTCCCTGACATGTCTTACACTGGCTTATC-TATCGAAGGCCGATGCATGTCCCAGACA
74435772 TGTCTTACACTAGC
65 TGTCTTACACTAGC
74435786 ACACATATCG
Statistics
Matches: 146, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
93 1 0.01
94 97 0.66
95 8 0.05
96 40 0.27
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (93 bp):
GATGCATGTCCCTGACATGTCTTACACTGGCTTATCTATCGAAGGCCGATGCATGTCCCAGACAT
GTCTTACACTAGCTTACATCTCAAGGCC
Found at i:74435685 original size:142 final size:143
Alignment explanation
Indices: 74435518--74435782 Score: 354
Period size: 142 Copynumber: 1.9 Consensus size: 143
74435508 ACAACAAGAT
* *** * * *
74435518 GATGCCATGTCCTAGACAGGTCTTACACTAGCTTGTCTATCGCAAGGCTGATTCATGTCCCAGAC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTAAATATCGCAAGGCCGATGCATGTCCAAGAC
* * **
74435583 ATGTCTTACACTAGCTCTCGTCTCAAT-GCCGATGCATGTCCCTGACATGTCTTACACTGGCTTA
66 ATGTCTTACACTAGCTCTCATAT-AATGGCCGATGCATGTCCCAAACATGTCTTACACTGGCTTA
74435647 AATATCTTAAGGCC
130 AATATCTTAAGGCC
* * *
74435661 GATG-CATGTCCCAGACATGTCTTACACTAGCTTAAATATCTCGAGGCCGATGCATGTCCAAGAC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTAAATATCGCAAGGCCGATGCATGTCCAAGAC
* **
74435725 ATGTCTTACACTGGCTCTCATATTGTGGCCGATGCATGTCCCAAACATGTCTTACACT
66 ATGTCTTACACTAGCTCTCATATAATGGCCGATGCATGTCCCAAACATGTCTTACACT
74435783 AGCACACATA
Statistics
Matches: 104, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
141 1 0.01
142 99 0.95
143 4 0.04
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (143 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAGCTTAAATATCGCAAGGCCGATGCATGTCCAAGAC
ATGTCTTACACTAGCTCTCATATAATGGCCGATGCATGTCCCAAACATGTCTTACACTGGCTTAA
ATATCTTAAGGCC
Found at i:74435794 original size:94 final size:95
Alignment explanation
Indices: 74435562--74435794 Score: 287
Period size: 94 Copynumber: 2.5 Consensus size: 95
74435552 GTCTATCGCA
* * * * * *
74435562 AGGCTGATTCATGTCCCAGACATGTCTTACACTAGCTCTC--GTCTCAATGCCGATGCATGTCCC
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATATCTCAAGGCCGATGCATGTCCA
*
74435625 TGACATGTCTTACACTGGCTTAAATATCTT
66 AGACATGTCTTACACTGGCTTAAATATCTT
* * *
74435655 AAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCTCGAGGCCGATGCATGTCC
1 -AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATATCTCAAGGCCGATGCATGTCC
*
74435720 AAGACATGTCTTACACTGGCTCT-CATAT-TGT
65 AAGACATGTCTTACACTGGCT-TAAATATCT-T
* *
74435751 -GGCCGATGCATGTCCCAAACATGTCTTACACTAGCACACATATC
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATATC
74435795 GCCCAACTCA
Statistics
Matches: 120, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
94 75 0.62
95 1 0.01
96 43 0.36
97 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (95 bp):
AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATATCTCAAGGCCGATGCATGTCCA
AGACATGTCTTACACTGGCTTAAATATCTT
Found at i:74439873 original size:30 final size:30
Alignment explanation
Indices: 74439812--74439880 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
74439802 CACACGAGTA
* *** *
74439812 GACACACGGGCGTGTGTCTAGATTGTTTGT
1 GACACACGGGCGTGAGTCTAGACCATGTGT
74439842 GACACACGGGCGTGAGTCTAGACCATGTGT
1 GACACACGGGCGTGAGTCTAGACCATGTGT
74439872 GACACACGG
1 GACACACGG
74439881 TCTGCCCCAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.23
Consensus pattern (30 bp):
GACACACGGGCGTGAGTCTAGACCATGTGT
Found at i:74442280 original size:17 final size:19
Alignment explanation
Indices: 74442254--74442290 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
74442244 TGAAAAACCC
74442254 ATGAGCATGAACT-TTGGT
1 ATGAGCATGAACTCTTGGT
74442272 ATGAG-ATGAACTCTTGGT
1 ATGAGCATGAACTCTTGGT
74442290 A
1 A
74442291 AGAATGCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.32
Consensus pattern (19 bp):
ATGAGCATGAACTCTTGGT
Found at i:74450398 original size:43 final size:43
Alignment explanation
Indices: 74450336--74450488 Score: 227
Period size: 43 Copynumber: 3.6 Consensus size: 43
74450326 CTAAACTCAT
* * * *
74450336 TCACCGACATT-TCGCCTGCTAGGCTTGAAGCCTGATATCATT
1 TCACCGACATTATAGCCTGCTAGGCTCGAAGCCTGATATTATC
* *
74450378 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTATC
1 TCACCGACATTATAGCCTGCTAGGCTCGAAGCCTGATATTATC
* *
74450421 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCTGATATTATC
1 TCACCGACATTATAGCCTGCTAGGCTCGAAGCCTGATATTATC
74450464 TCACCGACATTATAGCCTGCTAGGC
1 TCACCGACATTATAGCCTGCTAGGC
74450489 CCGTAGCCCG
Statistics
Matches: 101, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 10 0.10
43 91 0.90
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (43 bp):
TCACCGACATTATAGCCTGCTAGGCTCGAAGCCTGATATTATC
Found at i:74460269 original size:19 final size:20
Alignment explanation
Indices: 74460247--74460291 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
74460237 CTGTTTTATT
74460247 ATGGGCC-AACTGTATTAAA
1 ATGGGCCTAACTGTATTAAA
* *
74460266 ATGGGCCTAACTGTGTTAAT
1 ATGGGCCTAACTGTATTAAA
74460286 ATGGGC
1 ATGGGC
74460292 AACACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (20 bp):
ATGGGCCTAACTGTATTAAA
Found at i:74460447 original size:62 final size:61
Alignment explanation
Indices: 74460312--74460456 Score: 161
Period size: 61 Copynumber: 2.4 Consensus size: 61
74460302 ATATCTCGAC
* * *
74460312 TTGTAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCCGATATGCTCTGATA
1 TTGTAATAGGGCTATGGCCCAGACTAATACTGATATGGGCTAGGCCCGATATACTCTGATA
* * * *
74460373 TTGTAATAGGGCTATGGCCCAGATTAATATTGATATGGGTTAAGGCCCAGTTA-ACTCTGAT-
1 TTGTAATAGGGCTATGGCCCAGACTAATACTGATATGGGCT-AGGCCC-GATATACTCTGATA
*
74460434 TTCTGAATAGGGCT-TAGGCCCAG
1 TTGT-AATAGGGCTAT-GGCCCAG
74460457 TAAAGCTTGA
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
61 40 0.56
62 29 0.40
63 3 0.04
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (61 bp):
TTGTAATAGGGCTATGGCCCAGACTAATACTGATATGGGCTAGGCCCGATATACTCTGATA
Found at i:74462608 original size:17 final size:18
Alignment explanation
Indices: 74462569--74462608 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
74462559 TGTATTATTG
*
74462569 GTATT-TGAAATTTTTAT
1 GTATTATGAAATTATTAT
74462586 GT-TTATGAAATTATTAT
1 GTATTATGAAATTATTAT
74462603 -TATTAT
1 GTATTAT
74462609 TATTATTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (18 bp):
GTATTATGAAATTATTAT
Found at i:74469049 original size:37 final size:37
Alignment explanation
Indices: 74468993--74469121 Score: 120
Period size: 37 Copynumber: 3.5 Consensus size: 37
74468983 CTCCCTGTTA
* * * *
74468993 TGGTGTCTTTTCAGTTGGATTAGCTCTT-CGTAGCTAT-
1 TGGTGTGTTATCAGGTGGATTAGCTCTTATG-AGC-ATC
*
74469030 TGGTGTGTTATCAGGTGGATTGGCTCTTATGAGCATC
1 TGGTGTGTTATCAGGTGGATTAGCTCTTATGAGCATC
* **
74469067 TAGTGTGTTATTGGGTGGATTAGCTCTTATGAGCATC
1 TGGTGTGTTATCAGGTGGATTAGCTCTTATGAGCATC
* * *
74469104 TAGTCTGTT-TCAGTTGGA
1 TGGTGTGTTATCAGGTGGA
74469122 ATATCAATGT
Statistics
Matches: 77, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
36 8 0.10
37 68 0.88
38 1 0.01
ACGTcount: A:0.16, C:0.13, G:0.29, T:0.42
Consensus pattern (37 bp):
TGGTGTGTTATCAGGTGGATTAGCTCTTATGAGCATC
Found at i:74481923 original size:19 final size:19
Alignment explanation
Indices: 74481899--74481937 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
74481889 ATTCTAACTT
74481899 AAAATTTTAGGTGCAAGGG
1 AAAATTTTAGGTGCAAGGG
*
74481918 AAAATTTTAGGTGCAGGGG
1 AAAATTTTAGGTGCAAGGG
74481937 A
1 A
74481938 CACACAGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.36, C:0.05, G:0.33, T:0.26
Consensus pattern (19 bp):
AAAATTTTAGGTGCAAGGG
Found at i:74487640 original size:109 final size:109
Alignment explanation
Indices: 74487443--74487649 Score: 292
Period size: 109 Copynumber: 1.9 Consensus size: 109
74487433 AACGATATAA
*
74487443 GCATAAGGTTGAGTTCTCACTCTTAATAAATTAATATCCCAAGATTTGGGTAGTCCTATTGAGAC
1 GCATAAGGTTGAGTTCTCACTCTTAATAAATTAATATCCCAAGATTTGGGTAGTCCTATTGAAAC
* *
74487508 GGACTTGATGAATTCACTAACATGTGAGGTTGAATGATGTACAT
66 GGACTTGATGAATTCACCAACATGTGAAGTTGAATGATGTACAT
* * * * * *
74487552 GCATAAGGTTGTGTTCTCACTTTTAATGAATTCATATTCCAGGATTTGGGTCA-TCCTATTGAAA
1 GCATAAGGTTGAGTTCTCACTCTTAATAAATTAATATCCCAAGATTTGGGT-AGTCCTATTGAAA
*
74487616 C-GAGCTTGATGAATTCACCGACATGTGAAGTTGA
65 CGGA-CTTGATGAATTCACCAACATGTGAAGTTGA
74487650 GTTTACTACT
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
108 2 0.02
109 83 0.97
110 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.34
Consensus pattern (109 bp):
GCATAAGGTTGAGTTCTCACTCTTAATAAATTAATATCCCAAGATTTGGGTAGTCCTATTGAAAC
GGACTTGATGAATTCACCAACATGTGAAGTTGAATGATGTACAT
Found at i:74492569 original size:16 final size:16
Alignment explanation
Indices: 74492550--74492629 Score: 61
Period size: 18 Copynumber: 4.7 Consensus size: 16
74492540 TTAAAAATAA
74492550 AAAAAATATAATTTAT
1 AAAAAATATAATTTAT
* *
74492566 AAAAAATATAAATTAGG
1 AAAAAATATAATTTA-T
* * *
74492583 AAAAATATAAAACTTGT
1 AAAAA-ATATAATTTAT
*
74492600 AAAAAATTATGAATTTTT
1 AAAAAA-TAT-AATTTAT
74492618 AAAAATATATAA
1 AAAAA-ATATAA
74492630 AATATATAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
16 15 0.30
17 14 0.28
18 20 0.40
19 1 0.02
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (16 bp):
AAAAAATATAATTTAT
Found at i:74492678 original size:49 final size:48
Alignment explanation
Indices: 74492600--74492739 Score: 135
Period size: 50 Copynumber: 2.9 Consensus size: 48
74492590 TAAAACTTGT
* * *
74492600 AAAAAATTAT-GAATTTTTAAAAATA-TATAAAA-TATATAAAATTATTA
1 AAAAAATTATAGAA-TTTAAAAAATATTATAAAAGAATA-AAAATTATAA
*
74492647 ATAAAATTAATAGAATTTAAAAAATATTATAAGAAGAATAAAAATTATAA
1 AAAAAATT-ATAGAATTTAAAAAATATTATAA-AAGAATAAAAATTATAA
* *
74492697 AAATAAATTA-AGAATATAGAAAAAAATTATAAAAGAACTAAAA
1 AAA-AAATTATAGAATTTA-AAAAATATTATAAAAGAA-TAAAA
74492740 TACCGGTTTT
Statistics
Matches: 78, Mismatches: 7, Indels: 13
0.80 0.07 0.13
Matches are distributed among these distances:
47 7 0.09
48 12 0.15
49 20 0.26
50 31 0.40
51 8 0.10
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (48 bp):
AAAAAATTATAGAATTTAAAAAATATTATAAAAGAATAAAAATTATAA
Found at i:74494781 original size:75 final size:75
Alignment explanation
Indices: 74494697--74494842 Score: 283
Period size: 75 Copynumber: 1.9 Consensus size: 75
74494687 TAAGCATATT
74494697 TAGCCGATTTATTTTGGGGTTCATAAGAAATTGGGGATTCTTTTTATTTTTTATTTGGGTATTGA
1 TAGCCGATTTATTTTGGGGTTCATAAGAAATTGGGGATTCTTTTTATTTTTTATTTGGGTATTGA
74494762 TGAAAAGAAA
66 TGAAAAGAAA
*
74494772 TAGCCGATTTATTTTGGGGTTTATAAGAAATTGGGGATTCTTTTTATTTTTTATTTGGGTATTGA
1 TAGCCGATTTATTTTGGGGTTCATAAGAAATTGGGGATTCTTTTTATTTTTTATTTGGGTATTGA
74494837 TGAAAA
66 TGAAAA
74494843 ATTTCTTTTC
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 70 1.00
ACGTcount: A:0.27, C:0.05, G:0.23, T:0.46
Consensus pattern (75 bp):
TAGCCGATTTATTTTGGGGTTCATAAGAAATTGGGGATTCTTTTTATTTTTTATTTGGGTATTGA
TGAAAAGAAA
Found at i:74497945 original size:42 final size:42
Alignment explanation
Indices: 74497899--74498053 Score: 168
Period size: 42 Copynumber: 3.7 Consensus size: 42
74497889 CTAAGACTAT
* * *
74497899 GTGTAAGACCATATTTAGGATATGGCATCTATATGAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCAATATGAGACTTC
* * *
74497941 GTGTAAGACCATATCTGGGATATGGCATCGATATAAGACTTT
1 GTGTAAGACCATATCTGGGATATGGCATCAATATGAGACTTC
* * * *
74497983 GTGTAAGACCATAGCTGGGCTATTGGCATCAATACGAGA-TCCC
1 GTGTAAGACCATATCTGGGATA-TGGCATCAATATGAGACT-TC
* * *
74498026 ATGTAAGACCATATTTGGGATATAGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
74498054 TGGTATGGTA
Statistics
Matches: 94, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
42 63 0.67
43 31 0.33
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCAATATGAGACTTC
Found at i:74498045 original size:85 final size:84
Alignment explanation
Indices: 74497890--74498053 Score: 204
Period size: 85 Copynumber: 1.9 Consensus size: 84
74497880 TTCGGGTTAC
** * * * *
74497890 TAAGACTATGTGTAAGACCATATTTAGGATATGGCATCTATATGAGACTTCGTGTAAGACCATAT
1 TAAGACTATGTGTAAGACCATAGCTAGGATATGGCATCAATACGAGACTCCATGTAAGACCATAT
*
74497955 CTGGGATATGGCATCGATA
66 CTGGGATATAGCATCGATA
* * *
74497974 TAAGACTTTGTGTAAGACCATAGCTGGGCTATTGGCATCAATACGAGA-TCCCATGTAAGACCAT
1 TAAGACTATGTGTAAGACCATAGCTAGGATA-TGGCATCAATACGAGACT-CCATGTAAGACCAT
*
74498038 ATTTGGGATATAGCAT
64 ATCTGGGATATAGCAT
74498054 TGGTATGGTA
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
84 27 0.40
85 40 0.60
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30
Consensus pattern (84 bp):
TAAGACTATGTGTAAGACCATAGCTAGGATATGGCATCAATACGAGACTCCATGTAAGACCATAT
CTGGGATATAGCATCGATA
Found at i:74499581 original size:40 final size:40
Alignment explanation
Indices: 74499505--74499648 Score: 229
Period size: 40 Copynumber: 3.6 Consensus size: 40
74499495 CAAACCCAAG
* *
74499505 TGCCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAA
*
74499544 TGCCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
*
74499584 AGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
74499624 TGCCTTCGGGACTTAGCCCGGATAT
1 TGCCTTCGGGACTTAGCCCGGATAT
74499649 CATTCGAATA
Statistics
Matches: 97, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
39 14 0.14
40 80 0.82
41 3 0.03
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
Found at i:74508575 original size:231 final size:231
Alignment explanation
Indices: 74508170--74508630 Score: 877
Period size: 231 Copynumber: 2.0 Consensus size: 231
74508160 CACCATGACT
74508170 TATCAATATCAAACATTTTCTCAACCAAACATGGCCATATCATAAAATTATTTACACAAAATAGG
1 TATCAATATCAAACATTTTCTCAACCAAACATGGCCATATCATAAAATTATTTACACAAAATAGG
*
74508235 TATATTGCTATACATGCCATACTTAAGTAGTTTTACAAGCCATTTACTAAGATAAAAGTCCTTTG
66 TATATTGCTATACATGCCATACTTAAGTAGTTGTACAAGCCATTTACTAAGATAAAAGTCCTTTG
*
74508300 GATAGTGTGATCGAACTTTCGACCTGTCCCGATTCCTAAGCCGGCTTGTTCAAAACTACAGTGAA
131 GATAGTGTGATCGAACTTTCGACCTGCCCCGATTCCTAAGCCGGCTTGTTCAAAACTACAGTGAA
*
74508365 TGAAAAGGAAGGAGTAAGCATAAATGCTTAGTAAGC
196 TGAAAAGGAAGGACTAAGCATAAATGCTTAGTAAGC
*
74508401 TATCAATATCAAACATTTTCTCCACCAAACATGGCCATATCATAAAATTATTTACACAAAATAGG
1 TATCAATATCAAACATTTTCTCAACCAAACATGGCCATATCATAAAATTATTTACACAAAATAGG
74508466 TATATTGCTATACATGCCATACTTAAGTAGTTGTACAAGCCATTTACTAAGATAAAAGTCCTTTG
66 TATATTGCTATACATGCCATACTTAAGTAGTTGTACAAGCCATTTACTAAGATAAAAGTCCTTTG
*
74508531 GATAGTGTGATCGAACTTTCGACCTGCCCCGATTCCTGAGCCGGCTTGTTCAAAACTACAGTGAA
131 GATAGTGTGATCGAACTTTCGACCTGCCCCGATTCCTAAGCCGGCTTGTTCAAAACTACAGTGAA
74508596 TGAAAAGGAAGGACTAAGCATAAATGCTTAGTAAG
196 TGAAAAGGAAGGACTAAGCATAAATGCTTAGTAAG
74508631 TTCATATGCA
Statistics
Matches: 225, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
231 225 1.00
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (231 bp):
TATCAATATCAAACATTTTCTCAACCAAACATGGCCATATCATAAAATTATTTACACAAAATAGG
TATATTGCTATACATGCCATACTTAAGTAGTTGTACAAGCCATTTACTAAGATAAAAGTCCTTTG
GATAGTGTGATCGAACTTTCGACCTGCCCCGATTCCTAAGCCGGCTTGTTCAAAACTACAGTGAA
TGAAAAGGAAGGACTAAGCATAAATGCTTAGTAAGC
Found at i:74508866 original size:47 final size:47
Alignment explanation
Indices: 74508797--74509115 Score: 638
Period size: 47 Copynumber: 6.8 Consensus size: 47
74508787 CTGTCCAAAC
74508797 CTCACGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CTCACGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
74508844 CTCACGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CTCACGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
74508891 CTCACGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CTCACGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
74508938 CTCACGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CTCACGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
74508985 CTCACGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CTCACGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
74509032 CTCACGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CTCACGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
74509079 CTCACGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CTCACGAACTCGGACTCAACTCAACGAGTTCGGATGC
74509116 TCAACCATCC
Statistics
Matches: 272, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 272 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (47 bp):
CTCACGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
Found at i:74514127 original size:21 final size:21
Alignment explanation
Indices: 74514101--74514142 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
74514091 TCTCGAGTTC
*
74514101 CCTACACTGGCTGCCGAAGTA
1 CCTACACTGGCTGCAGAAGTA
74514122 CCTACACTGGCTGCAGAAGTA
1 CCTACACTGGCTGCAGAAGTA
74514143 TTCTGAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.31, G:0.24, T:0.19
Consensus pattern (21 bp):
CCTACACTGGCTGCAGAAGTA
Found at i:74516566 original size:155 final size:155
Alignment explanation
Indices: 74516284--74516577 Score: 588
Period size: 155 Copynumber: 1.9 Consensus size: 155
74516274 TCGGATACAT
74516284 GGATAATTTGCACATAAGTGCCACATATGTAATCAAGAAATCATGTAACCCGCCCCTAAGTGAAC
1 GGATAATTTGCACATAAGTGCCACATATGTAATCAAGAAATCATGTAACCCGCCCCTAAGTGAAC
74516349 TCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAATTCGGACTCAACTCAACGAG
66 TCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAATTCGGACTCAACTCAACGAG
74516414 TTCGGATGCCTAGTTACATCTCACG
131 TTCGGATGCCTAGTTACATCTCACG
74516439 GGATAATTTGCACATAAGTGCCACATATGTAATCAAGAAATCATGTAACCCGCCCCTAAGTGAAC
1 GGATAATTTGCACATAAGTGCCACATATGTAATCAAGAAATCATGTAACCCGCCCCTAAGTGAAC
74516504 TCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAATTCGGACTCAACTCAACGAG
66 TCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAATTCGGACTCAACTCAACGAG
74516569 TTCGGATGC
131 TTCGGATGC
74516578 TCAACCATCC
Statistics
Matches: 139, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
155 139 1.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (155 bp):
GGATAATTTGCACATAAGTGCCACATATGTAATCAAGAAATCATGTAACCCGCCCCTAAGTGAAC
TCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAATTCGGACTCAACTCAACGAG
TTCGGATGCCTAGTTACATCTCACG
Found at i:74517964 original size:15 final size:16
Alignment explanation
Indices: 74517938--74517967 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
74517928 ATGAACCCTC
74517938 AGTAAGGTTATGATTG
1 AGTAAGGTTATGATTG
74517954 AGTAA-GTTATGATT
1 AGTAAGGTTATGATT
74517968 ATAAGATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.40
Consensus pattern (16 bp):
AGTAAGGTTATGATTG
Found at i:74522209 original size:12 final size:12
Alignment explanation
Indices: 74522190--74522219 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
74522180 GTGTCATCGT
74522190 ACACGGCCTACC
1 ACACGGCCTACC
*
74522202 ATACGGCCTACC
1 ACACGGCCTACC
74522214 ACACGG
1 ACACGG
74522220 TCGTGTGGCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.27, C:0.43, G:0.20, T:0.10
Consensus pattern (12 bp):
ACACGGCCTACC
Found at i:74527331 original size:43 final size:43
Alignment explanation
Indices: 74527279--74527387 Score: 148
Period size: 43 Copynumber: 2.5 Consensus size: 43
74527269 AAAACTCCAC
* * * *
74527279 AAAAGATCATGACTTTTAGCGGCATTTGTGGGGAAAA-CGCCGCT
1 AAAA-ATCATGGCCTTTAGCGGCATTTGT-GAGAAAAGCACCGCT
74527323 AAAAATCATGGCCTTTAGCGGCATTTGTGAGAAAAGCACCGCT
1 AAAAATCATGGCCTTTAGCGGCATTTGTGAGAAAAGCACCGCT
*
74527366 AAAACTCATGGCCTTTAGCGGC
1 AAAAATCATGGCCTTTAGCGGC
74527388 GCTTTTCCTA
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
42 6 0.10
43 49 0.83
44 4 0.07
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (43 bp):
AAAAATCATGGCCTTTAGCGGCATTTGTGAGAAAAGCACCGCT
Found at i:74527408 original size:43 final size:41
Alignment explanation
Indices: 74527313--74527454 Score: 112
Period size: 42 Copynumber: 3.3 Consensus size: 41
74527303 TTTGTGGGGA
* * * *
74527313 AAACGCCGCTAAAAATCATGGCCTTTAGCGGC-ATTTGT-GAGA
1 AAACACCGCT-AAAATCATGGCCTTTAGCGGCGCTTT-TCTA-C
74527355 AAAGCACCGCTAAAACTCATGGCCTTTAGCGGCGCTTTTCCTAC
1 AAA-CACCGCTAAAA-TCATGGCCTTTAGCGGCGCTTTT-CTAC
* * *
74527399 AACCGCCGCTATAAA--ACGGACCTTTAGCGGCGCTTTTCTCAC
1 AAACACCGCTA-AAATCATGG-CCTTTAGCGGCGCTTTTCT-AC
74527441 AAACACCGCTAAAA
1 AAACACCGCTAAAA
74527455 AACGACATTT
Statistics
Matches: 83, Mismatches: 9, Indels: 17
0.76 0.08 0.16
Matches are distributed among these distances:
41 8 0.10
42 35 0.42
43 31 0.37
44 8 0.10
45 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.23
Consensus pattern (41 bp):
AAACACCGCTAAAATCATGGCCTTTAGCGGCGCTTTTCTAC
Found at i:74527430 original size:42 final size:42
Alignment explanation
Indices: 74527377--74527458 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
74527367 AAACTCATGG
* * *
74527377 CCTTTAGCGGCGCTTTTC-CTACAACCGCCGCTATAAAACGGA
1 CCTTTAGCGGCGCTTTTCTC-ACAAACACCGCTAAAAAACGGA
74527419 CCTTTAGCGGCGCTTTTCTCACAAACACCGCTAAAAAACG
1 CCTTTAGCGGCGCTTTTCTCACAAACACCGCTAAAAAACG
74527459 ACATTTATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 35 0.97
43 1 0.03
ACGTcount: A:0.27, C:0.33, G:0.17, T:0.23
Consensus pattern (42 bp):
CCTTTAGCGGCGCTTTTCTCACAAACACCGCTAAAAAACGGA
Found at i:74529242 original size:19 final size:19
Alignment explanation
Indices: 74529218--74529260 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
74529208 TAAATTTTTA
*
74529218 AAAATTTT-AATTAAATACT
1 AAAATTTTAAACT-AATACT
74529237 AAAATTTTAAACTAATACT
1 AAAATTTTAAACTAATACT
74529256 AAAAT
1 AAAAT
74529261 CTATAATGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.86
20 3 0.14
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAATTTTAAACTAATACT
Found at i:74531943 original size:16 final size:16
Alignment explanation
Indices: 74531922--74531952 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
74531912 TAAGATTATC
74531922 ATTTTTTGAAATTTTT
1 ATTTTTTGAAATTTTT
74531938 ATTTTTTGAAATTTT
1 ATTTTTTGAAATTTT
74531953 GAATATTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (16 bp):
ATTTTTTGAAATTTTT
Found at i:74532021 original size:7 final size:7
Alignment explanation
Indices: 74532011--74532073 Score: 99
Period size: 7 Copynumber: 8.7 Consensus size: 7
74532001 AAATTTCAAG
74532011 TTTTTAA
1 TTTTTAA
74532018 TTTTTAA
1 TTTTTAA
74532025 TTTTTAA
1 TTTTTAA
74532032 TTTTTAA
1 TTTTTAA
74532039 TTTTTAA
1 TTTTTAA
*
74532046 TTTTTTTA
1 -TTTTTAA
74532054 TTTTTAAA
1 TTTTT-AA
74532062 TTTTTAA
1 TTTTTAA
74532069 TTTTT
1 TTTTT
74532074 TTGAATATTT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
7 40 0.77
8 12 0.23
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (7 bp):
TTTTTAA
Found at i:74532028 original size:14 final size:14
Alignment explanation
Indices: 74532011--74532073 Score: 99
Period size: 15 Copynumber: 4.4 Consensus size: 14
74532001 AAATTTCAAG
74532011 TTTTTAATTTTTAA
1 TTTTTAATTTTTAA
74532025 TTTTTAATTTTTAA
1 TTTTTAATTTTTAA
*
74532039 TTTTTAATTTTTTTA
1 TTTTTAA-TTTTTAA
74532054 TTTTTAAATTTTTAA
1 TTTTT-AATTTTTAA
74532069 TTTTT
1 TTTTT
74532074 TTGAATATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
14 21 0.47
15 22 0.49
16 2 0.04
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (14 bp):
TTTTTAATTTTTAA
Found at i:74532093 original size:36 final size:32
Alignment explanation
Indices: 74532017--74532099 Score: 102
Period size: 29 Copynumber: 2.6 Consensus size: 32
74532007 CAAGTTTTTA
74532017 ATTTTTA-ATTTTT-AATTTTTAATTTTTAAT
1 ATTTTTATATTTTTAAATTTTTAATTTTTAAT
74532047 -TTTTT-TATTTTTAAATTTTTAATTTTTTTGAAT
1 ATTTTTATATTTTTAAATTTTTAA--TTTTT-AAT
74532080 ATTTTTATCATTTTTAAATT
1 ATTTTTAT-ATTTTTAAATT
74532100 AACATATAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
29 11 0.24
30 9 0.20
32 5 0.11
33 3 0.07
34 5 0.11
35 1 0.02
36 11 0.24
ACGTcount: A:0.28, C:0.01, G:0.01, T:0.70
Consensus pattern (32 bp):
ATTTTTATATTTTTAAATTTTTAATTTTTAAT
Found at i:74532585 original size:30 final size:31
Alignment explanation
Indices: 74532528--74532590 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 31
74532518 TATGTAATTG
* *
74532528 TATACTTGAAATTCTAATTATGGTTTAAATA
1 TATACTTGAAACTCTAATTATGATTTAAATA
* * *
74532559 TATAGTTGAAACT-TAATTTTGATTTAATTA
1 TATACTTGAAACTCTAATTATGATTTAAATA
74532589 TA
1 TA
74532591 CACATTTAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 16 0.59
31 11 0.41
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.48
Consensus pattern (31 bp):
TATACTTGAAACTCTAATTATGATTTAAATA
Found at i:74532704 original size:49 final size:49
Alignment explanation
Indices: 74532650--74532798 Score: 280
Period size: 49 Copynumber: 3.0 Consensus size: 49
74532640 ATATTTATGT
* *
74532650 ATGCAATATATAAATATAAAATGATGTTACATCAATAATTGTGTTAATA
1 ATGCAATATATAAATATAAAATAATGTTATATCAATAATTGTGTTAATA
74532699 ATGCAATATATAAATATAAAATAATGTTATATCAATAATTGTGTTAATA
1 ATGCAATATATAAATATAAAATAATGTTATATCAATAATTGTGTTAATA
74532748 ATGCAATATATAAATATAAAATAATGTTATATCAATAATTGTGTTAATA
1 ATGCAATATATAAATATAAAATAATGTTATATCAATAATTGTGTTAATA
74532797 AT
1 AT
74532799 TTACAAGAAC
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 98 1.00
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.38
Consensus pattern (49 bp):
ATGCAATATATAAATATAAAATAATGTTATATCAATAATTGTGTTAATA
Found at i:74533444 original size:40 final size:40
Alignment explanation
Indices: 74533393--74533487 Score: 129
Period size: 40 Copynumber: 2.4 Consensus size: 40
74533383 GCGTTTTCTG
74533393 AAAAGCGCCGCTAATGCTCAATCTTTAACGG-TGTTTTTCA
1 AAAAGCGCCGCTAATGCTCAATCTTTAACGGCT-TTTTTCA
* * * *
74533433 AAAAGCACCGCTAATGCTCGATCTTTAGCGGCTTTTTTTA
1 AAAAGCGCCGCTAATGCTCAATCTTTAACGGCTTTTTTCA
*
74533473 AAAAGCGCCACTAAT
1 AAAAGCGCCGCTAAT
74533488 TCCATGGTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
40 47 0.98
41 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (40 bp):
AAAAGCGCCGCTAATGCTCAATCTTTAACGGCTTTTTTCA
Found at i:74533592 original size:41 final size:40
Alignment explanation
Indices: 74533498--74533604 Score: 108
Period size: 40 Copynumber: 2.6 Consensus size: 40
74533488 TCCATGGTTT
* * *
74533498 TGCTGAACTCTTTTGCGGTATTTTCTCAAAAGCGCCACTAA
1 TGCTCAAC-CTTTAGCGGCATTTTCTCAAAAGCGCCACTAA
* * * *
74533539 TGCTCGATCTTTAGTGGCATTTT-TCAAAAAGCGCCGCTAA
1 TGCTCAACCTTTAGCGGCATTTTCTC-AAAAGCGCCACTAA
*
74533579 TGCTCTAACCTTTAGCGGCGTTTTCT
1 TGCTC-AACCTTTAGCGGCATTTTCT
74533605 TACTAGCGCC
Statistics
Matches: 52, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
39 2 0.04
40 30 0.58
41 19 0.37
42 1 0.02
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (40 bp):
TGCTCAACCTTTAGCGGCATTTTCTCAAAAGCGCCACTAA
Found at i:74533603 original size:40 final size:41
Alignment explanation
Indices: 74533518--74533621 Score: 104
Period size: 41 Copynumber: 2.6 Consensus size: 41
74533508 TTTTGCGGTA
* * * * * *
74533518 TTTTCTCAAAAGCGCCACTAATGCTCGATCTTTAGTGGCAT
1 TTTTCTAAAAAGCGCCGCTAATGCTCAACCTTTAGCGGCAG
74533559 TTTTC-AAAAAGCGCCGCTAATGCTCTAACCTTTAGCGGC-G
1 TTTTCTAAAAAGCGCCGCTAATGCTC-AACCTTTAGCGGCAG
* **
74533599 TTTTCTTACTAGCGCCGCTAATG
1 TTTTCTAAAAAGCGCCGCTAATG
74533622 TACAACTTTT
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
40 23 0.44
41 29 0.56
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (41 bp):
TTTTCTAAAAAGCGCCGCTAATGCTCAACCTTTAGCGGCAG
Found at i:74533644 original size:132 final size:132
Alignment explanation
Indices: 74533376--74533633 Score: 304
Period size: 132 Copynumber: 1.9 Consensus size: 132
74533366 TTTTATGGCG
* * * **
74533376 TTTTGCGGCGTTTTCTGAAAAGCGCCGCTAATGCTCAATCTTTAACGGTGTTTTTCAAAAAGCAC
1 TTTTGCGGCATTTTCTCAAAAGCGCCACTAATGCTCAATCTTTAACGGCATTTTTCAAAAAGCAC
* * * * **
74533441 CGCTAATGCTCGATCTTTAGCGGCTTTTTTTAAAAAGCGCCACTAATTCCATGGTTTTGCTGAAC
66 CGCTAATGCTCAACCTTTAGCGGCTTTTCTTAAAAAGCGCCACTAATTACATACTTTTGCTGAAC
74533506 TC
131 TC
* * ** *
74533508 TTTTGCGGTATTTTCTCAAAAGCGCCACTAATGCTCGATCTTTAGTGGCATTTTTCAAAAAGCGC
1 TTTTGCGGCATTTTCTCAAAAGCGCCACTAATGCTCAATCTTTAACGGCATTTTTCAAAAAGCAC
** *
74533573 CGCTAATGCTCTAACCTTTAGCGGCGTTTTCTT-ACTAGCGCCGCTAATGTACA-ACTTTTGC
66 CGCTAATGCTC-AACCTTTAGCGGC-TTTTCTTAAAAAGCGCCACTAAT-TACATACTTTTGC
74533634 GGTGTTTTTT
Statistics
Matches: 104, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
132 66 0.63
133 29 0.28
134 9 0.09
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.35
Consensus pattern (132 bp):
TTTTGCGGCATTTTCTCAAAAGCGCCACTAATGCTCAATCTTTAACGGCATTTTTCAAAAAGCAC
CGCTAATGCTCAACCTTTAGCGGCTTTTCTTAAAAAGCGCCACTAATTACATACTTTTGCTGAAC
TC
Found at i:74534665 original size:45 final size:45
Alignment explanation
Indices: 74534597--74534860 Score: 429
Period size: 45 Copynumber: 5.9 Consensus size: 45
74534587 AAGAGGTGGA
** * * *
74534597 CAACATCATGCATAATTTGTGGAACAAATTAAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
74534642 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
74534687 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
74534732 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* *
74534777 CAACATCATGCATAATTCATGGAAGAATTTAAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* * * *
74534822 CAACATCATGCATAATTTAAGGAACAAATTGAGGAAGCA
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCA
74534861 CCATGGCCGA
Statistics
Matches: 207, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 207 1.00
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (45 bp):
CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
Found at i:74551206 original size:15 final size:13
Alignment explanation
Indices: 74551186--74551219 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 13
74551176 ATAAAAAATT
74551186 ATATTAAATTATTAA
1 ATATTAAATTA--AA
74551201 ATATTAAATTAAA
1 ATATTAAATTAAA
74551214 ATATTA
1 ATATTA
74551220 TATTTTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.42
15 11 0.58
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATATTAAATTAAA
Found at i:74553722 original size:17 final size:17
Alignment explanation
Indices: 74553672--74553722 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 17
74553662 TGGAAACATG
*
74553672 ATCTTCGAAGATATGCA
1 ATCTTAGAAGATATGCA
*
74553689 ATCTTAGATATGATATGTA
1 ATCTTAGA-A-GATATGCA
*
74553708 ATTTTAGAAGATATG
1 ATCTTAGAAGATATG
74553723 ATTTTGTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 13 0.45
18 2 0.07
19 14 0.48
ACGTcount: A:0.37, C:0.08, G:0.18, T:0.37
Consensus pattern (17 bp):
ATCTTAGAAGATATGCA
Found at i:74553722 original size:22 final size:21
Alignment explanation
Indices: 74553694--74553751 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 21
74553684 ATGCAATCTT
* *
74553694 AGATATGATATGTAATTTTAG
1 AGATATGATTTGTAATCTTAG
74553715 AAGATATGATTTTGTAATCTTAG
1 -AGATATGA-TTTGTAATCTTAG
*
74553738 AGATTTGATTTGTA
1 AGATATGATTTGTA
74553752 GATACCCTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 15 0.47
23 11 0.34
ACGTcount: A:0.34, C:0.02, G:0.19, T:0.45
Consensus pattern (21 bp):
AGATATGATTTGTAATCTTAG
Found at i:74558843 original size:17 final size:17
Alignment explanation
Indices: 74558793--74558843 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 17
74558783 TGGAAACATG
*
74558793 ATCTTCGAAGATATGCA
1 ATCTTAGAAGATATGCA
*
74558810 ATCTTAGATATGATATGTA
1 ATCTTAGA-A-GATATGCA
74558829 ATCTTAGAAGATATG
1 ATCTTAGAAGATATG
74558844 ATTTTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 13 0.43
18 2 0.07
19 15 0.50
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (17 bp):
ATCTTAGAAGATATGCA
Found at i:74558843 original size:22 final size:21
Alignment explanation
Indices: 74558815--74558872 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 21
74558805 ATGCAATCTT
*
74558815 AGATATGATATGTAATCTTAG
1 AGATATGATTTGTAATCTTAG
74558836 AAGATATGATTTTGTAATCTTAG
1 -AGATATGA-TTTGTAATCTTAG
*
74558859 AGATTTGATTTGTA
1 AGATATGATTTGTA
74558873 GATACCCTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 6 0.18
22 15 0.45
23 12 0.36
ACGTcount: A:0.34, C:0.03, G:0.19, T:0.43
Consensus pattern (21 bp):
AGATATGATTTGTAATCTTAG
Found at i:74560098 original size:80 final size:80
Alignment explanation
Indices: 74559965--74560847 Score: 1723
Period size: 80 Copynumber: 11.0 Consensus size: 80
74559955 TGATAGAGTA
* *
74559965 AGGAAAATTAAAATTCGGGCTAAAAT-TGACAAAATACCAAGTTGTGGACAAAATGGTAAAAATG
1 AGGAAAATTGAAATTCGGGCTAAAATCAGA-AAAATACCAAGTTGTGGACAAAATGGTAAAAATG
74560029 GCCATTTTCGTATACG
65 GCCATTTTCGTATACG
74560045 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
1 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
74560110 CCATTTTCGTATACG
66 CCATTTTCGTATACG
74560125 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
1 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
74560190 CCATTTTCGTATACG
66 CCATTTTCGTATACG
74560205 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
1 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
74560270 CCATTTTCGTATACG
66 CCATTTTCGTATACG
74560285 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
1 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
74560350 CCATTTTCGTATACG
66 CCATTTTCGTATACG
74560365 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
1 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
74560430 CCATTTTCGTATACG
66 CCATTTTCGTATACG
74560445 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
1 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
74560510 CCATTTTCGTATACG
66 CCATTTTCGTATACG
74560525 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
1 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
74560590 CCATTTTCGTATACG
66 CCATTTTCGTATACG
74560605 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
1 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
74560670 CCATTTTCGTATACG
66 CCATTTTCGTATACG
74560685 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
1 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
74560750 CCATTTTCGTATACG
66 CCATTTTCGTATACG
*
74560765 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGA
1 AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
74560830 CCATTTTCGTATACG
66 CCATTTTCGTATACG
74560845 AGG
1 AGG
74560848 TAAGTTCGTG
Statistics
Matches: 799, Mismatches: 3, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
80 797 1.00
81 2 0.00
ACGTcount: A:0.43, C:0.12, G:0.21, T:0.24
Consensus pattern (80 bp):
AGGAAAATTGAAATTCGGGCTAAAATCAGAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGG
CCATTTTCGTATACG
Found at i:74561038 original size:27 final size:27
Alignment explanation
Indices: 74560997--74561050 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
74560987 TGTCATGTGA
* *
74560997 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
74561024 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
74561051 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:74561472 original size:50 final size:49
Alignment explanation
Indices: 74561297--74561542 Score: 253
Period size: 49 Copynumber: 5.0 Consensus size: 49
74561287 TCTATTGTGA
* * * * *
74561297 GGTCACGTGTGTAGTATTAAGTGCAGGCTACAACATGTACTAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** * * *
74561346 GGTCGTATGTGTAGTACTAAGTGCATGCTACTATC-CGTACCCGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA-CGTGTACCAGATAA--TT
* * * **
74561397 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
74561446 AGGTCACATGTGTAG-ATCTAAGTGCAGGCTACTATGTGTACCGGATAATT
1 -GGTCACATGTGTAGTA-CTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
74561496 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
74561543 CCTTGTCTAT
Statistics
Matches: 161, Mismatches: 29, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
49 81 0.50
50 43 0.27
51 37 0.23
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:74561487 original size:101 final size:98
Alignment explanation
Indices: 74561299--74561528 Score: 275
Period size: 100 Copynumber: 2.3 Consensus size: 98
74561289 TATTGTGAGG
* * **
74561299 TCACGTGTGTAGTATTAAGTGCAGGCTACAACATGTACTAGATAATTGGTCGTATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACTAGATAATTGGTCACATGTGTAGTACT
*
74561364 AAGTGCATGCTACTATCCGTACCCGATAACTTTGA
66 AAGTGCAGGCTACTATCCGTACCCGATAA--TTGA
* **
74561399 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTTAGGTCACATGTGTAG-A
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACT-AGATAATT-GGTCACATGTGTAGTA
** * *
74561462 TCTAAGTGCAGGCTACTATGTGTACCGGATAATTGG
64 -CTAAGTGCAGGCTACTATCCGTACCCGATAATTGA
* *
74561498 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
74561529 TGCGTACCAG
Statistics
Matches: 113, Mismatches: 14, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
99 33 0.29
100 41 0.36
101 39 0.35
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACTAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTATCCGTACCCGATAATTGA
Found at i:74564133 original size:38 final size:38
Alignment explanation
Indices: 74564082--74564158 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
74564072 GTATTTATCC
74564082 GTTCTCAGAAAAATTTCTATGGTTGTTGATCTTTTTAA
1 GTTCTCAGAAAAATTTCTATGGTTGTTGATCTTTTTAA
*
74564120 GTTCTCAGAAAAATTTTTATGGTTGTTGATCTTTTTAA
1 GTTCTCAGAAAAATTTCTATGGTTGTTGATCTTTTTAA
74564158 G
1 G
74564159 AAATTCTTGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.48
Consensus pattern (38 bp):
GTTCTCAGAAAAATTTCTATGGTTGTTGATCTTTTTAA
Found at i:74566884 original size:80 final size:80
Alignment explanation
Indices: 74566751--74566909 Score: 255
Period size: 80 Copynumber: 2.0 Consensus size: 80
74566741 ATAGAGTAAG
* **** *
74566751 GAAAATTAAAATTCGGGCTAAAATTGGCAAAATACCAAGTTGTGGACAAAATGGTAAAAATGGCC
1 GAAAATTAAAATTCGGGATAAAATCAAAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGACC
74566816 ATTTTCGTATACGAA
66 ATTTTCGTATACGAA
*
74566831 GAAAATTGAAATTCGGGATAAAATCAAAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGACC
1 GAAAATTAAAATTCGGGATAAAATCAAAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGACC
74566896 ATTTTCGTATACGA
66 ATTTTCGTATACGA
74566910 GGTAAGTTCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 72 1.00
ACGTcount: A:0.45, C:0.12, G:0.19, T:0.25
Consensus pattern (80 bp):
GAAAATTAAAATTCGGGATAAAATCAAAAAAATACCAAGTTGTGGACAAAATGGTAAAAATGACC
ATTTTCGTATACGAA
Found at i:74567102 original size:27 final size:27
Alignment explanation
Indices: 74567061--74567114 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
74567051 TGTCATGTGA
* *
74567061 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
74567088 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
74567115 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:74567439 original size:49 final size:49
Alignment explanation
Indices: 74567360--74567590 Score: 275
Period size: 49 Copynumber: 4.7 Consensus size: 49
74567350 TCTATTGTGA
* *
74567360 GGTCACGTGTGTAGTATTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * ** *
74567409 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA--TT
* * * * * **
74567460 GATCACGTGTGTAGTACTAAGT-CAGGCTATTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
74567508 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
**
74567558 GGTTGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
74567591 TGCATACCAG
Statistics
Matches: 150, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
48 2 0.01
49 91 0.61
50 36 0.24
51 21 0.14
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:74567535 original size:100 final size:99
Alignment explanation
Indices: 74567362--74567604 Score: 303
Period size: 100 Copynumber: 2.5 Consensus size: 99
74567352 TATTGTGAGG
* * *
74567362 TCACGTGTGTAGTATTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
*
74567427 AAGTGCAGGCTACTATGCATACCCGATAACTTTGA
66 AAGTGCAGGCTACTATGCATACCCGATAA-TTGGA
* * **
74567462 TCACGTGTGTAGTACTAAGT-CAGGCTATTACGTGTATCAGATGGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
** * *
74567526 TAAGTGCAGGCTACTATGTGTACCGGATAATTGGT
65 TAAGTGCAGGCTACTATGCATACCCGATAATTGGA
* **
74567561 TGCA--TGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAA
1 T-CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
74567605 CCTTGTCTAT
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
98 15 0.12
99 42 0.35
100 64 0.53
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (99 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCATACCCGATAATTGGA
Found at i:74570158 original size:25 final size:25
Alignment explanation
Indices: 74570130--74570178 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
74570120 ATTTTTTGGC
*
74570130 TTTT-CTTCTCCCATTTAAACTCTAT
1 TTTTACTT-TCCCACTTAAACTCTAT
*
74570155 TTTTAGTTTCCCACTTAAACTCTA
1 TTTTACTTTCCCACTTAAACTCTA
74570179 ATTAGTGTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.22, C:0.27, G:0.02, T:0.49
Consensus pattern (25 bp):
TTTTACTTTCCCACTTAAACTCTAT
Found at i:74570964 original size:37 final size:36
Alignment explanation
Indices: 74570885--74570979 Score: 127
Period size: 37 Copynumber: 2.6 Consensus size: 36
74570875 TCCATTAAAT
* * * *
74570885 AAAAATTAACGCATAATTATAACTTTAGGAGTAATA
1 AAAAATAAACACATAATTGTAACTTTAGGACTAATA
*
74570921 AAAAATAAACACATAATTGTAACCTTTTGGACTAATA
1 AAAAATAAACACATAATTGTAA-CTTTAGGACTAATA
*
74570958 AAAAATAAACATATAATTGTAA
1 AAAAATAAACACATAATTGTAA
74570980 TATCTGAGGC
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 19 0.37
37 33 0.63
ACGTcount: A:0.53, C:0.09, G:0.08, T:0.29
Consensus pattern (36 bp):
AAAAATAAACACATAATTGTAACTTTAGGACTAATA
Found at i:74572217 original size:14 final size:15
Alignment explanation
Indices: 74572200--74572228 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
74572190 GAGTATGGTA
74572200 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
74572214 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
74572229 TATTAATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:74573214 original size:29 final size:29
Alignment explanation
Indices: 74573155--74573215 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
74573145 ACTTATTTTA
* **
74573155 TTGTTATTTTTGTTATTTTTTAAAGGTAT
1 TTGTTAATTTTGTTATTTTTTAAAGACAT
*
74573184 TTGTTAATTTT-TTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATT-TTTTAAAGACAT
74573213 TTG
1 TTG
74573216 CTTGTTAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 5 0.19
29 22 0.81
ACGTcount: A:0.23, C:0.02, G:0.13, T:0.62
Consensus pattern (29 bp):
TTGTTAATTTTGTTATTTTTTAAAGACAT
Found at i:74580150 original size:217 final size:217
Alignment explanation
Indices: 74579774--74580205 Score: 846
Period size: 217 Copynumber: 2.0 Consensus size: 217
74579764 CTTTAGCCCA
74579774 TCACAGTACTAGTAGCAGTAACAGTTATGCAGTACCAAAATCCTACCCAACCATCCTCTACACAC
1 TCACAGTACTAGTAGCAGTAACAGTTATGCAGTACCAAAATCCTACCCAACCATCCTCTACACAC
74579839 TATCTCCGTCCAACCCTACACTCCATGTGGGGATATAATCAACCCACCCATCCCTACGCTCCAAG
66 TATCTCCGTCCAACCCTACACTCCATGTGGGGATATAATCAACCCACCCATCCCTACGCTCCAAG
*
74579904 TAGTACCAAATGCGGCACAAAATAATAGTTTGCAACTCAGCCCCAACCCCCTACGCTACTATTTT
131 TAGTACCAAATGCGGCACAAAACAATAGTTTGCAACTCAGCCCCAACCCCCTACGCTACTATTTT
74579969 GTGCCGCATTCGATACTACTAC
196 GTGCCGCATTCGATACTACTAC
74579991 TCACAGTACTAGTAGCAGTAACAGTTATGCAGTACCAAAATCCTACCCAACCATCCTCTACACAC
1 TCACAGTACTAGTAGCAGTAACAGTTATGCAGTACCAAAATCCTACCCAACCATCCTCTACACAC
74580056 TATCTCCGTCCAACCCTACACTCCATGTGGGGATATAATCAACCCACCCATCCCTACGCTCCAAG
66 TATCTCCGTCCAACCCTACACTCCATGTGGGGATATAATCAACCCACCCATCCCTACGCTCCAAG
*
74580121 TAGTACCAAATGCGGCACAAAACAATAGTTTGCAACTCAGCCCCAACCCCCTACGCTACTCTTTT
131 TAGTACCAAATGCGGCACAAAACAATAGTTTGCAACTCAGCCCCAACCCCCTACGCTACTATTTT
74580186 GTGCCGCATTCGATACTACT
196 GTGCCGCATTCGATACTACT
74580206 TGGAGTGTAG
Statistics
Matches: 213, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
217 213 1.00
ACGTcount: A:0.30, C:0.34, G:0.12, T:0.23
Consensus pattern (217 bp):
TCACAGTACTAGTAGCAGTAACAGTTATGCAGTACCAAAATCCTACCCAACCATCCTCTACACAC
TATCTCCGTCCAACCCTACACTCCATGTGGGGATATAATCAACCCACCCATCCCTACGCTCCAAG
TAGTACCAAATGCGGCACAAAACAATAGTTTGCAACTCAGCCCCAACCCCCTACGCTACTATTTT
GTGCCGCATTCGATACTACTAC
Found at i:74583641 original size:5 final size:5
Alignment explanation
Indices: 74583633--74583661 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
74583623 TCTTAATATA
74583633 ATTAT ATTAT ATTAT ATTAT ATTAT ATTA
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTA
74583662 AAAGATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:74585757 original size:25 final size:24
Alignment explanation
Indices: 74585735--74585816 Score: 103
Period size: 25 Copynumber: 3.3 Consensus size: 24
74585725 TCAAAGCTTA
74585735 TATGAGCTTACCGATTTGCAGCTCG
1 TATGAGCTTACCGATTT-CAGCTCG
* *
74585760 TGA-AAGCTTACCGATTCTTAGCTCG
1 T-ATGAGCTTACCGATT-TCAGCTCG
74585785 TATGAGCTTACCGATTTACAGCTCG
1 TATGAGCTTACCGATTT-CAGCTCG
74585810 TATGAGC
1 TATGAGC
74585817 ATACATGTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
24 2 0.04
25 45 0.92
26 2 0.04
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (24 bp):
TATGAGCTTACCGATTTCAGCTCG
Found at i:74586884 original size:29 final size:29
Alignment explanation
Indices: 74586842--74586899 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
74586832 TATATGCACA
74586842 ATGTCGAGTGTAGGATGATGCCAAATTGG
1 ATGTCGAGTGTAGGATGATGCCAAATTGG
*
74586871 ATGTCGAGTGTAGGTTGATGCCAAATTGG
1 ATGTCGAGTGTAGGATGATGCCAAATTGG
74586900 TTGAGAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.26, C:0.10, G:0.34, T:0.29
Consensus pattern (29 bp):
ATGTCGAGTGTAGGATGATGCCAAATTGG
Found at i:74591713 original size:22 final size:22
Alignment explanation
Indices: 74591685--74591845 Score: 130
Period size: 22 Copynumber: 7.3 Consensus size: 22
74591675 TTAGCATTAC
74591685 GGTGCCTACTAATTTGCACTAT
1 GGTGCCTACTAATTTGCACTAT
*
74591707 GGTGCCTACTAATTAGCACTAT
1 GGTGCCTACTAATTTGCACTAT
** *
74591729 GGTGTGTACTAATTTGCACTAC
1 GGTGCCTACTAATTTGCACTAT
** * *
74591751 GGTGTGTACTGATTAGCACT-T
1 GGTGCCTACTAATTTGCACTAT
* *
74591772 CGATGCCTAC-AGATTTGCACTGT
1 -GGTGCCTACTA-ATTTGCACTAT
* *
74591795 GATGCCTACTAATTAGCACT-T
1 GGTGCCTACTAATTTGCACTAT
* * * *
74591816 CGGTGTCTACTGATTTGCATTAC
1 -GGTGCCTACTAATTTGCACTAT
74591839 GGTGCCT
1 GGTGCCT
74591846 GCTCAGCACT
Statistics
Matches: 112, Mismatches: 21, Indels: 12
0.77 0.14 0.08
Matches are distributed among these distances:
21 1 0.01
22 109 0.97
23 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (22 bp):
GGTGCCTACTAATTTGCACTAT
Found at i:74591723 original size:44 final size:44
Alignment explanation
Indices: 74591674--74591867 Score: 184
Period size: 44 Copynumber: 4.5 Consensus size: 44
74591664 CTTGTACAGG
*
74591674 ATTAGCA-TTACGGTGCCTACTAATTTGCACTATGGTGCCTACTA
1 ATTAGCACTT-CGGTGCCTACTAATTTGCACTACGGTGCCTACTA
** ** *
74591718 ATTAGCACTAT-GGTGTGTACTAATTTGCACTACGGTGTGTACTG
1 ATTAGCACT-TCGGTGCCTACTAATTTGCACTACGGTGCCTACTA
* ** *
74591762 ATTAGCACTTCGATGCCTAC-AGATTTGCACTGTGATGCCTACTA
1 ATTAGCACTTCGGTGCCTACTA-ATTTGCACTACGGTGCCTACTA
* * * *
74591806 ATTAGCACTTCGGTGTCTACTGATTTGCATTACGGTGCCTGC--
1 ATTAGCACTTCGGTGCCTACTAATTTGCACTACGGTGCCTACTA
*
74591848 -TCAGCACTTCGGTGCCTACT
1 ATTAGCACTTCGGTGCCTACT
74591868 GGTATAATGT
Statistics
Matches: 120, Mismatches: 25, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
41 18 0.15
43 2 0.02
44 98 0.82
45 1 0.01
46 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (44 bp):
ATTAGCACTTCGGTGCCTACTAATTTGCACTACGGTGCCTACTA
Found at i:74591832 original size:88 final size:88
Alignment explanation
Indices: 74591673--74591842 Score: 238
Period size: 88 Copynumber: 1.9 Consensus size: 88
74591663 GCTTGTACAG
* * *
74591673 GATTAGCATTACGGTGCCTACTAATTTGCACTATGGTGCCTACTAATTAGCACTATGGTGTGTAC
1 GATTAGCATTACGATGCCTACTAATTTGCACTATGATGCCTACTAATTAGCACTATGGTGTCTAC
74591738 TAATTTGCACTACGGTGTGTACT
66 TAATTTGCACTACGGTGTGTACT
*
74591761 GATTAGCACTT-CGATGCCTAC-AGATTTGCACTGTGATGCCTACTAATTAGCACT-TCGGTGTC
1 GATTAGCA-TTACGATGCCTACTA-ATTTGCACTATGATGCCTACTAATTAGCACTAT-GGTGTC
* *
74591823 TACTGATTTGCATTACGGTG
63 TACTAATTTGCACTACGGTG
74591843 CCTGCTCAGC
Statistics
Matches: 73, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
87 2 0.03
88 69 0.95
89 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.35
Consensus pattern (88 bp):
GATTAGCATTACGATGCCTACTAATTTGCACTATGATGCCTACTAATTAGCACTATGGTGTCTAC
TAATTTGCACTACGGTGTGTACT
Found at i:74591845 original size:66 final size:66
Alignment explanation
Indices: 74591674--74591845 Score: 170
Period size: 66 Copynumber: 2.6 Consensus size: 66
74591664 CTTGTACAGG
* * * * * **
74591674 ATTAGCA-TTACGGTGCCTACTAATTTGCACTATGGTGCCTACTAATTAGCACTATGGTGTGTAC
1 ATTAGCACTT-CGGTGTCTACTGATTTGCATTACGGTGCCTACTAATTAGCACTATGATGCCTAC
74591738 TA
65 TA
* * * * * * *
74591740 ATTTGCACTACGGTGTGTACTGATTAGCACTT-CGATGCCTAC-AGATTTGCACTGTGATGCCTA
1 ATTAGCACTTCGGTGTCTACTGATTTGCA-TTACGGTGCCTACTA-ATTAGCACTATGATGCCTA
74591803 CTA
64 CTA
74591806 ATTAGCACTTCGGTGTCTACTGATTTGCATTACGGTGCCT
1 ATTAGCACTTCGGTGTCTACTGATTTGCATTACGGTGCCT
74591846 GCTCAGCACT
Statistics
Matches: 83, Mismatches: 19, Indels: 8
0.75 0.17 0.07
Matches are distributed among these distances:
65 3 0.04
66 78 0.94
67 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.35
Consensus pattern (66 bp):
ATTAGCACTTCGGTGTCTACTGATTTGCATTACGGTGCCTACTAATTAGCACTATGATGCCTACT
A
Found at i:74603662 original size:52 final size:51
Alignment explanation
Indices: 74603585--74603682 Score: 178
Period size: 52 Copynumber: 1.9 Consensus size: 51
74603575 CATAGTAGTG
74603585 AAAGCTACCTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGACC
1 AAAGCTACCTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGACC
*
74603636 AAAGCTATCTTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTG
1 AAAGCTA-CCTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTG
74603683 AGTCACTAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 7 0.16
52 38 0.84
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.28
Consensus pattern (51 bp):
AAAGCTACCTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGACC
Found at i:74604216 original size:21 final size:22
Alignment explanation
Indices: 74604187--74604227 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
74604177 AGTAAAAGTC
74604187 ATTTCTCTAACCA-TAAACATTT
1 ATTTCTCT-ACCATTAAACATTT
74604209 ATTT-TCTACCATTAAACAT
1 ATTTCTCTACCATTAAACAT
74604228 CAATATACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 10 0.56
22 4 0.22
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (22 bp):
ATTTCTCTACCATTAAACATTT
Found at i:74604945 original size:49 final size:47
Alignment explanation
Indices: 74604856--74604997 Score: 160
Period size: 49 Copynumber: 2.9 Consensus size: 47
74604846 CCCATGAGTA
* **
74604856 ATGTGATCCCATGTACAACCATGCCTGGGACATGACATTGGCATCGAT
1 ATGTGATCCCATGTACGACCATATCTGGGACATG-CATTGGCATCGAT
* * *
74604904 ATGTGAGGTCCCATGTAGGACCAT-TTTGGGACATAGCATTGGCATCGTT
1 ATGTGA--TCCCATGTACGACCATATCTGGGACAT-GCATTGGCATCGAT
* *
74604953 ATGTGATCCCATGTACGACCATATCTGGGATATGGCCTTGGCATC
1 ATGTGATCCCATGTACGACCATATCTGGGACAT-GCATTGGCATC
74604998 TTATTATGTG
Statistics
Matches: 80, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
47 15 0.19
48 24 0.30
49 26 0.32
50 15 0.19
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (47 bp):
ATGTGATCCCATGTACGACCATATCTGGGACATGCATTGGCATCGAT
Found at i:74607686 original size:47 final size:45
Alignment explanation
Indices: 74607612--74607879 Score: 175
Period size: 47 Copynumber: 5.8 Consensus size: 45
74607602 ATTTGTTTGT
* * * *
74607612 GAGCTAGTGTAAGACATGTCTGAGACATGTATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TACGA
* *
74607658 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CATACGA
* * *
74607706 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATACG-A
* * * * *
74607753 -AGCCAGTGTAAGACATGTCTGAGACGTGGATCGACTAC-TA-GA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATACGA
* * * *** * * *
74607795 TGATGCCAGTGTAAGACCATGTTTGGGAAATGGCATCGACTTGAGATGT
1 -GA-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATACGA
*
74607844 GAGCTAGTGTAAGACCATGTCTGGGACATGACATCG
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCG
74607880 ACACCTTACC
Statistics
Matches: 178, Mismatches: 29, Indels: 29
0.75 0.12 0.12
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 2 0.01
45 12 0.07
46 67 0.38
47 68 0.38
48 25 0.14
49 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATACGA
Found at i:74607880 original size:47 final size:45
Alignment explanation
Indices: 74607609--74607881 Score: 201
Period size: 46 Copynumber: 5.9 Consensus size: 45
74607599 GTCATTTGTT
* * * * *** *
74607609 TGTGAGCTAGTGTAAGACATGTCTGAGACATGTATCGGCCACATTA
1 TGTGAGCCAGTGTAAGACATGTCTGGGACATGCATCGACTTGA-GA
* *
74607655 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
1 TGTGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-TTGAGA
* * * * **
74607703 CGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGA
1 TGTGAGCCAGTGTAAGACATGTCTGGGACATGCATC-GACTTGAGA
* * * * *
74607749 CGTAAGCCAGTGTAAGACATGTCTGAGACGTGGATCGACTACT-AGA
1 TGTGAGCCAGTGTAAGACATGTCTGGGACATGCATCGACT--TGAGA
* *
74607795 --TGATGCCAGTGTAAGACCATGTTTGGGAAATGGCATCGACTTGAGA
1 TGTGA-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACTTGAGA
*
74607841 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGACATCGAC
1 TGTGAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGAC
74607882 ACCTTACCCA
Statistics
Matches: 184, Mismatches: 30, Indels: 25
0.77 0.13 0.10
Matches are distributed among these distances:
44 2 0.01
45 16 0.09
46 71 0.39
47 68 0.37
48 26 0.14
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
TGTGAGCCAGTGTAAGACATGTCTGGGACATGCATCGACTTGAGA
Found at i:74608999 original size:20 final size:21
Alignment explanation
Indices: 74608961--74608999 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
74608951 CCGAGTCGGT
*
74608961 CACACGGGCGTGTTGCCCTTC
1 CACACGGGCGTGATGCCCTTC
74608982 CACACGGGCGT-ATGCCCT
1 CACACGGGCGTGATGCCCT
74609000 ATTTTAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.13, C:0.38, G:0.28, T:0.21
Consensus pattern (21 bp):
CACACGGGCGTGATGCCCTTC
Found at i:74611363 original size:18 final size:16
Alignment explanation
Indices: 74611342--74611375 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 16
74611332 GTTGAGAAAA
74611342 TAATTTAATTTGAAATTT
1 TAATTT-ATTT-AAATTT
74611360 TAATTTATTTAAATTT
1 TAATTTATTTAAATTT
74611376 ATTTAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 4 0.25
18 6 0.38
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TAATTTATTTAAATTT
Found at i:74613112 original size:138 final size:138
Alignment explanation
Indices: 74612855--74613115 Score: 346
Period size: 138 Copynumber: 1.9 Consensus size: 138
74612845 CCTGGGTTTC
* * * * *
74612855 ATTTTTCTCCTACTCACATTTGTATTTTTTATTTTATATTGTTTTAAACTTTTAAACTTTTTAAT
1 ATTTTTCTCCTACTCAAATTTATATTTTTTATTATATATTGCTTCAAACTTTTAAACTTTTTAAT
* * *
74612920 TAATTTTTTAACATATTAGTTCTTTAGTTAGATGATTAGATAGTTGCAAATACATCATTGATTCT
66 TAATTTTTTAACATATTAGTACTTTAGTTAGATGATTAGATAGCTACAAATACATCATTGATTCT
74612985 CGTGTTCA
131 CGTGTTCA
* * **
74612993 ATTTTT-TCCTATTCAAATTTATATTTTTTATTATATGTTGCTTCAAGTTTTTTAAA-TTTTTAA
1 ATTTTTCTCCTACTCAAATTTATATTTTTTATTATATATTGCTTCAA-ACTTTTAAACTTTTTAA
* * * *
74613056 TTAATTTTTTTAACATATTAGTACTTTTGTTAGATGATTATATTGCTACAATTACATCAT
65 TTAA-TTTTTTAACATATTAGTACTTTAGTTAGATGATTAGATAGCTACAAATACATCAT
74613116 CAAGTCGGAG
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
137 44 0.42
138 61 0.58
ACGTcount: A:0.28, C:0.10, G:0.08, T:0.54
Consensus pattern (138 bp):
ATTTTTCTCCTACTCAAATTTATATTTTTTATTATATATTGCTTCAAACTTTTAAACTTTTTAAT
TAATTTTTTAACATATTAGTACTTTAGTTAGATGATTAGATAGCTACAAATACATCATTGATTCT
CGTGTTCA
Found at i:74619421 original size:17 final size:17
Alignment explanation
Indices: 74619399--74619432 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
74619389 TATTTAATTT
*
74619399 TTTTAAATTAATTTTTA
1 TTTTAAAATAATTTTTA
*
74619416 TTTTAAAATATTTTTTA
1 TTTTAAAATAATTTTTA
74619433 AAAATATAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTAAAATAATTTTTA
Found at i:74619574 original size:38 final size:41
Alignment explanation
Indices: 74619501--74619584 Score: 104
Period size: 38 Copynumber: 2.1 Consensus size: 41
74619491 ATACTAAAAA
* *
74619501 GTATTAATATTAAAAACATTACCATAAATATAATAAA-ATTT
1 GTATTAATATTAAAAACATCACAATAAATATAATAAATA-TT
*
74619542 GTATT-ATATTAAAAACA-CA-AATAAATGTAATAAATATT
1 GTATTAATATTAAAAACATCACAATAAATATAATAAATATT
74619580 GTATT
1 GTATT
74619585 GTCTTAAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
38 20 0.51
39 2 0.05
40 12 0.31
41 5 0.13
ACGTcount: A:0.52, C:0.06, G:0.05, T:0.37
Consensus pattern (41 bp):
GTATTAATATTAAAAACATCACAATAAATATAATAAATATT
Found at i:74622872 original size:22 final size:21
Alignment explanation
Indices: 74622847--74622889 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
74622837 AAAAACTTCT
74622847 CTTTCCATCAAATCTTCACTC
1 CTTTCCATCAAATCTTCACTC
* *
74622868 NCTTTCCCTCAATTCTTCACTC
1 -CTTTCCATCAAATCTTCACTC
74622890 ATATCCAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.40, G:0.00, T:0.40
Consensus pattern (21 bp):
CTTTCCATCAAATCTTCACTC
Found at i:74624471 original size:22 final size:22
Alignment explanation
Indices: 74624443--74624484 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
74624433 ATGGACAAAT
* *
74624443 AGAATAAGATAAGATACATAAC
1 AGAATAACATAAAATACATAAC
74624465 AGAATAACATAAAATACATA
1 AGAATAACATAAAATACATA
74624485 CCTCATTGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.62, C:0.10, G:0.10, T:0.19
Consensus pattern (22 bp):
AGAATAACATAAAATACATAAC
Found at i:74626651 original size:6 final size:6
Alignment explanation
Indices: 74626642--74626669 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
74626632 AAATGTAAAT
74626642 TTGGAA TTGGAA TTGGAA TTGGAA TTGG
1 TTGGAA TTGGAA TTGGAA TTGGAA TTGG
74626670 GTGGAAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.36, T:0.36
Consensus pattern (6 bp):
TTGGAA
Found at i:74627036 original size:20 final size:19
Alignment explanation
Indices: 74627006--74627047 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
74626996 ATTTTCATAA
74627006 TTAAAATAATTT-ATATTAT
1 TTAAAATAATTTAATATT-T
74627025 TTAAATATAATTTAATATTT
1 TTAAA-ATAATTTAATATTT
74627045 TTA
1 TTA
74627048 TTAAAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.24
20 11 0.52
21 5 0.24
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTAAAATAATTTAATATTT
Found at i:74627043 original size:18 final size:18
Alignment explanation
Indices: 74626990--74627044 Score: 58
Period size: 18 Copynumber: 3.0 Consensus size: 18
74626980 AAAAATTTAA
* * *
74626990 AAATATATTTTCATAATT
1 AAATATAATTTAATATTT
74627008 AAA-ATAATTTATATTATTT
1 AAATATAATTTA-A-TATTT
74627027 AAATATAATTTAATATTT
1 AAATATAATTTAATATTT
74627045 TTATTAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 6 0.19
18 9 0.29
19 8 0.26
20 8 0.26
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
AAATATAATTTAATATTT
Found at i:74633179 original size:19 final size:19
Alignment explanation
Indices: 74633155--74633191 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
74633145 ACACTTGGGT
74633155 TTGGTGTTTCTAACACTTA
1 TTGGTGTTTCTAACACTTA
74633174 TTGGTGTTTCTAACACTT
1 TTGGTGTTTCTAACACTT
74633192 CTACACTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.49
Consensus pattern (19 bp):
TTGGTGTTTCTAACACTTA
Found at i:74635834 original size:25 final size:25
Alignment explanation
Indices: 74635806--74635877 Score: 99
Period size: 25 Copynumber: 2.9 Consensus size: 25
74635796 TGTGAGTTAT
* * *
74635806 ATATCAGGAAGCTCTTGCGAGCCAA
1 ATATCGGGAAGCTCATGAGAGCCAA
74635831 ATATCGGGAAGCTCATGAGAGCCAA
1 ATATCGGGAAGCTCATGAGAGCCAA
* *
74635856 GTATCGGGAAGCTCAAGAGAGC
1 ATATCGGGAAGCTCATGAGAGC
74635878 TGTGGTTTGT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.29, T:0.17
Consensus pattern (25 bp):
ATATCGGGAAGCTCATGAGAGCCAA
Found at i:74638459 original size:38 final size:37
Alignment explanation
Indices: 74638414--74638512 Score: 108
Period size: 38 Copynumber: 2.6 Consensus size: 37
74638404 GAAATCCTTG
** *
74638414 TTATAATTATTGTAATTATAATTTAGGATGGAATATTA
1 TTATAATTATTGTAATTATAATTTAGG-TCAAACATTA
* * **
74638452 TTATAATTACTGTAATTGTAATTTTTTGTCAAACATTA
1 TTATAATTATTGTAATTATAA-TTTAGGTCAAACATTA
*
74638490 TTATAATTATGGTAATTATAATT
1 TTATAATTATTGTAATTATAATT
74638513 ATTATATTCA
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
37 2 0.04
38 44 0.88
39 4 0.08
ACGTcount: A:0.37, C:0.03, G:0.10, T:0.49
Consensus pattern (37 bp):
TTATAATTATTGTAATTATAATTTAGGTCAAACATTA
Found at i:74640579 original size:93 final size:93
Alignment explanation
Indices: 74640419--74640600 Score: 292
Period size: 93 Copynumber: 2.0 Consensus size: 93
74640409 CAAAAGCATA
* * *
74640419 TTTGGAGTCAAACTCCATCCTACTCTCTAAATGGTCAAAATTTGTTGAAGAAGACGCATGCCCTA
1 TTTGGAGTCAAACTCCATCCCAATCTCTAAATGATCAAAATTTGTTGAAGAAGACGCATGCCCTA
74640484 GTCTTCTACGAGGGAGGTCTAGAACATC
66 GTCTTCTACGAGGGAGGTCTAGAACATC
* * * *
74640512 TTTGGAGTCAAGCTCCATCCCAATCTCTAAATGATCGAAATTTGTTGAAGAAGATGCATGCCTTA
1 TTTGGAGTCAAACTCCATCCCAATCTCTAAATGATCAAAATTTGTTGAAGAAGACGCATGCCCTA
*
74640577 GTCTTCTATGAGGGAGGTCTAGAA
66 GTCTTCTACGAGGGAGGTCTAGAA
74640601 ATACTAGACC
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 81 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.29
Consensus pattern (93 bp):
TTTGGAGTCAAACTCCATCCCAATCTCTAAATGATCAAAATTTGTTGAAGAAGACGCATGCCCTA
GTCTTCTACGAGGGAGGTCTAGAACATC
Found at i:74643291 original size:20 final size:20
Alignment explanation
Indices: 74643268--74643308 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
74643258 AATGTGTAAT
*
74643268 TAGAGGCACCGAAGTGAAAA
1 TAGAGGCACCAAAGTGAAAA
*
74643288 TAGAGGCACCAAAGTGCAAA
1 TAGAGGCACCAAAGTGAAAA
74643308 T
1 T
74643309 CCCATACAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.44, C:0.17, G:0.27, T:0.12
Consensus pattern (20 bp):
TAGAGGCACCAAAGTGAAAA
Found at i:74648792 original size:79 final size:81
Alignment explanation
Indices: 74648656--74648838 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
74648646 TCGAATGATG
* *
74648656 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
74648720 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
74648735 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
74648797 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
74648815 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
74648839 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:74648854 original size:40 final size:40
Alignment explanation
Indices: 74648657--74648840 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
74648647 CGAATGATGT
* * * *
74648657 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
74648697 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
74648737 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
74648775 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
74648816 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
74648841 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:74648862 original size:79 final size:79
Alignment explanation
Indices: 74648709--74648873 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
74648699 GGACTAAGAT
* **
74648709 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
74648774 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
74648788 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
74648851 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
74648867 CCGAAGG
1 CCGAAGG
74648874 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:74659960 original size:50 final size:52
Alignment explanation
Indices: 74659850--74659969 Score: 163
Period size: 50 Copynumber: 2.3 Consensus size: 52
74659840 ATGAACAAAT
* * *
74659850 GAGTTACTTAATGCATGACTTAATTTAATGATACAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACATAATTTAATGATACAAACTTTAACTAACATGA
* * *
74659902 GAGTTACATAATGCATGTCATAATTT-ATGATGCAAAC-TTAACTTACATGA
1 GAGTTACATAATGCATGACATAATTTAATGATACAAACTTTAACTAACATGA
*
74659952 GAGTTACATAATGAATGA
1 GAGTTACATAATGCATGA
74659970 TTTTATTAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
50 27 0.45
51 10 0.17
52 23 0.38
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.33
Consensus pattern (52 bp):
GAGTTACATAATGCATGACATAATTTAATGATACAAACTTTAACTAACATGA
Found at i:74660056 original size:39 final size:39
Alignment explanation
Indices: 74659989--74660064 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
74659979 ATGCAGAACA
* *
74659989 CATATTAATGATATTCAAACTATGACATAATTAAAGACT
1 CATACTAATGATATTCAAACTATAACATAATTAAAGACT
* *
74660028 CATACTAATGATGTTCAAATTATAACATAATTAAAGA
1 CATACTAATGATATTCAAACTATAACATAATTAAAGA
74660065 TAATTAAAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.47, C:0.12, G:0.08, T:0.33
Consensus pattern (39 bp):
CATACTAATGATATTCAAACTATAACATAATTAAAGACT
Found at i:74665602 original size:46 final size:43
Alignment explanation
Indices: 74665459--74665594 Score: 132
Period size: 47 Copynumber: 3.0 Consensus size: 43
74665449 CCCGCCCCTA
74665459 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TT
* * * *
74665506 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATT
74665552 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT
74665595 CCTAGTGACA
Statistics
Matches: 75, Mismatches: 8, Indels: 14
0.77 0.08 0.14
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 29 0.39
47 30 0.40
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (43 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATT
Found at i:74666038 original size:30 final size:30
Alignment explanation
Indices: 74666004--74666063 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
74665994 ATTTAATACG
74666004 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
74666034 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
74666064 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:74670577 original size:26 final size:27
Alignment explanation
Indices: 74670517--74670569 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
74670507 CCAAAGTGAT
* *
74670517 AAATGACTGTTATGCCCCTATGAGTTA
1 AAATGACTATTATGCCCCTATGAGATA
*
74670544 AAATGACTATTATGCCCTTATGAGAT
1 AAATGACTATTATGCCCCTATGAGAT
74670570 GTATGACTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (27 bp):
AAATGACTATTATGCCCCTATGAGATA
Found at i:74670821 original size:22 final size:22
Alignment explanation
Indices: 74670779--74670823 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
74670769 CCCTCACATG
*
74670779 GAGTGTAGGGCTGGATGGAGTA
1 GAGTATAGGGCTGGATGGAGTA
*
74670801 GAGTATAGAGGCTGG-TTGAGTA
1 GAGTATAG-GGCTGGATGGAGTA
74670823 G
1 G
74670824 GATTCTGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.24, C:0.04, G:0.47, T:0.24
Consensus pattern (22 bp):
GAGTATAGGGCTGGATGGAGTA
Found at i:74672298 original size:42 final size:42
Alignment explanation
Indices: 74672239--74672370 Score: 131
Period size: 42 Copynumber: 3.1 Consensus size: 42
74672229 CATCAGAAAA
*
74672239 GTACTTGATTTTATGTAAGACCACGTCTGGGATGTTGGCATC
1 GTACTTGATTTCATGTAAGACCACGTCTGGGATGTTGGCATC
* ****
74672281 GTACTTGATTTCGTGTAAGACTTTTTCTGGGATAG-TGGCATC
1 GTACTTGATTTCATGTAAGACCACGTCTGGGAT-GTTGGCATC
* * * * * *
74672323 GATATTTAATTACATGTAAGAGCACGTCTAGGATGTTGGCATT
1 G-TACTTGATTTCATGTAAGACCACGTCTGGGATGTTGGCATC
74672366 GTACT
1 GTACT
74672371 AGCTTTCTGA
Statistics
Matches: 69, Mismatches: 18, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
42 39 0.57
43 30 0.43
ACGTcount: A:0.23, C:0.14, G:0.25, T:0.37
Consensus pattern (42 bp):
GTACTTGATTTCATGTAAGACCACGTCTGGGATGTTGGCATC
Found at i:74672363 original size:43 final size:41
Alignment explanation
Indices: 74672251--74672370 Score: 107
Period size: 43 Copynumber: 2.8 Consensus size: 41
74672241 ACTTGATTTT
* *
74672251 ATGTAAGACCACGTCTGGGATGTTGGCATCGTACTTGATTTC
1 ATGTAAGA-CACGTCTGGGATGTTGGCATCGTACTTAATTAC
* *** *
74672293 GTGTAAGACTTTTTCTGGGATAG-TGGCATCGATATTTAATTAC
1 ATGTAAGAC-ACGTCTGGGAT-GTTGGCATCG-TACTTAATTAC
* *
74672336 ATGTAAGAGCACGTCTAGGATGTTGGCATTGTACT
1 ATGTAAGA-CACGTCTGGGATGTTGGCATCGTACT
74672371 AGCTTTCTGA
Statistics
Matches: 59, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
41 1 0.02
42 27 0.46
43 30 0.51
44 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (41 bp):
ATGTAAGACACGTCTGGGATGTTGGCATCGTACTTAATTAC
Found at i:74676637 original size:18 final size:18
Alignment explanation
Indices: 74676614--74676653 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
74676604 TGGAAGTTTC
*
74676614 GAAATATTTAAAAAATTT
1 GAAATATTAAAAAAATTT
74676632 GAAATATTAAAAAAATTT
1 GAAATATTAAAAAAATTT
74676650 GAAA
1 GAAA
74676654 AAAAATATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (18 bp):
GAAATATTAAAAAAATTT
Found at i:74676794 original size:18 final size:18
Alignment explanation
Indices: 74676771--74676806 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
74676761 TCGCACTAAT
*
74676771 GAAATCTTTCGATTAAAA
1 GAAATCTTTCGATCAAAA
74676789 GAAATCTTTCGATCAAAA
1 GAAATCTTTCGATCAAAA
74676807 TTTTTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.31
Consensus pattern (18 bp):
GAAATCTTTCGATCAAAA
Found at i:74677159 original size:47 final size:47
Alignment explanation
Indices: 74677090--74677226 Score: 238
Period size: 47 Copynumber: 2.9 Consensus size: 47
74677080 TTGTTTTTCA
*
74677090 ATCTTTTCAATAAATCATGTTTCAAGAAGAGCTTTCAAATTCTGAAC
1 ATCTTTTCAATAAATCATGTTTCAAGAAGAGCTTTCAGATTCTGAAC
*
74677137 ATCTTTTCAATAAATCATGTTTCAAGAAGAGTTTTCAGATTCTGAAC
1 ATCTTTTCAATAAATCATGTTTCAAGAAGAGCTTTCAGATTCTGAAC
* *
74677184 ATCTTTTCAATAAATCATGTTTTAAGAAGAGCATTCAGATTCT
1 ATCTTTTCAATAAATCATGTTTCAAGAAGAGCTTTCAGATTCT
74677227 AAACTTCAAG
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 85 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (47 bp):
ATCTTTTCAATAAATCATGTTTCAAGAAGAGCTTTCAGATTCTGAAC
Found at i:74677712 original size:19 final size:19
Alignment explanation
Indices: 74677658--74677719 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 19
74677648 AAGAGTTGAT
74677658 AATGAGAGAAAACTAAA-AGA
1 AATGAGAGAAAA--AAATAGA
*
74677678 ATTTGAGAGAAGAAAAATAGA
1 A-ATGAGAGAA-AAAAATAGA
*
74677699 AATGAGAGAAAAAAATTGA
1 AATGAGAGAAAAAAATAGA
74677718 AA
1 AA
74677720 AAGAAAAAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
19 10 0.28
20 12 0.33
21 12 0.33
22 2 0.06
ACGTcount: A:0.63, C:0.02, G:0.21, T:0.15
Consensus pattern (19 bp):
AATGAGAGAAAAAAATAGA
Found at i:74683217 original size:42 final size:42
Alignment explanation
Indices: 74683170--74683251 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
74683160 CACATTAGAA
*
74683170 CCACAC-GACCAGGAACATAGGCATGTACCCAGGCTATGTGAG
1 CCACACGGACAAGG-ACATAGGCATGTACCCAGGCTATGTGAG
* * **
74683212 CCACACGGGCAAGGACATGGGCATGTGTCCAGGCTATGTG
1 CCACACGGACAAGGACATAGGCATGTACCCAGGCTATGTG
74683252 GCATATGAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 29 0.85
43 5 0.15
ACGTcount: A:0.27, C:0.27, G:0.30, T:0.16
Consensus pattern (42 bp):
CCACACGGACAAGGACATAGGCATGTACCCAGGCTATGTGAG
Found at i:74684182 original size:25 final size:25
Alignment explanation
Indices: 74684148--74684201 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
74684138 TAAACATACA
* *
74684148 TGTTCTGTTCTACTATGCTCCGTTT
1 TGTTATGTTCTACTATGCTCCGTTC
* * *
74684173 TGTTATGTTCTGCTCTGTTCCGTTC
1 TGTTATGTTCTACTATGCTCCGTTC
74684198 TGTT
1 TGTT
74684202 CAGTATTGCT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.06, C:0.22, G:0.19, T:0.54
Consensus pattern (25 bp):
TGTTATGTTCTACTATGCTCCGTTC
Found at i:74684239 original size:20 final size:20
Alignment explanation
Indices: 74684211--74684261 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
74684201 TCAGTATTGC
*
74684211 TCTGCTCTGTTCCATCTTGTT
1 TCTGTTCTGTTCCAT-TTGTT
* *
74684232 T-TGTTCTGCTCTATTTGTT
1 TCTGTTCTGTTCCATTTGTT
74684251 TCTGTTCTGTT
1 TCTGTTCTGTT
74684262 TTTCTTTGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
19 6 0.24
20 18 0.72
21 1 0.04
ACGTcount: A:0.04, C:0.22, G:0.16, T:0.59
Consensus pattern (20 bp):
TCTGTTCTGTTCCATTTGTT
Found at i:74684242 original size:30 final size:29
Alignment explanation
Indices: 74684169--74684243 Score: 71
Period size: 30 Copynumber: 2.5 Consensus size: 29
74684159 ACTATGCTCC
* *
74684169 GTTTTGTTATGTTCTGCTCTGTTCCGTTCT
1 GTTTTGTT-TGCTCTGCTCTGTTCCATTCT
**
74684199 GTTCAGTATTGCTCTGCTCTGTTCCA-TCTT
1 GTTTTGT-TTGCTCTGCTCTGTTCCATTC-T
74684229 GTTTTGTTCTGCTCT
1 GTTTTGTT-TGCTCT
74684244 ATTTGTTTCT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
29 3 0.08
30 32 0.89
31 1 0.03
ACGTcount: A:0.05, C:0.23, G:0.19, T:0.53
Consensus pattern (29 bp):
GTTTTGTTTGCTCTGCTCTGTTCCATTCT
Found at i:74685718 original size:32 final size:32
Alignment explanation
Indices: 74685681--74685745 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
74685671 AGATGTAAGA
74685681 ACAATTATACATTTCAATCAAAATTAAAGCTT
1 ACAATTATACATTTCAATCAAAATTAAAGCTT
*
74685713 ACAATTATACATTTCACTCAAAATTAAAGCTT
1 ACAATTATACATTTCAATCAAAATTAAAGCTT
74685745 A
1 A
74685746 ATCAATCAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.46, C:0.17, G:0.03, T:0.34
Consensus pattern (32 bp):
ACAATTATACATTTCAATCAAAATTAAAGCTT
Found at i:74688476 original size:13 final size:13
Alignment explanation
Indices: 74688458--74688484 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
74688448 GGATAGAAAA
74688458 TGATCATCCCTCC
1 TGATCATCCCTCC
74688471 TGATCATCCCTCC
1 TGATCATCCCTCC
74688484 T
1 T
74688485 ATTTTCTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.44, G:0.07, T:0.33
Consensus pattern (13 bp):
TGATCATCCCTCC
Found at i:74699514 original size:25 final size:25
Alignment explanation
Indices: 74699480--74699528 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
74699470 TAAATTGTTC
74699480 GAATTCAAGATTTC-GAAGAATAAGA
1 GAATTCAAGATTTCAG-AGAATAAGA
74699505 GAATTCAAGATTTCAGAGAATAAG
1 GAATTCAAGATTTCAGAGAATAAG
74699529 CTGTTGTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.47, C:0.08, G:0.20, T:0.24
Consensus pattern (25 bp):
GAATTCAAGATTTCAGAGAATAAGA
Found at i:74702639 original size:27 final size:26
Alignment explanation
Indices: 74702591--74702650 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
74702581 GCGAGGCTAC
*
74702591 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
74702618 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
74702644 CAGATAT
1 CAGATAT
74702651 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:74702747 original size:67 final size:70
Alignment explanation
Indices: 74702618--74702759 Score: 191
Period size: 67 Copynumber: 2.1 Consensus size: 70
74702608 TCACCAGATA
* * *
74702618 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCAAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAGA-ATATATATGTGGCAAAGCCACCAGATTGCAGCGA
74702683 GGCTAC
65 GGCTAC
* * *
74702689 CAGATATTGTGACGAAGTCACCAGAACAG-AT-T-TATGTGGCGAGGCCACCAGATTGCAGCGAG
1 CAGATATTGTGACGAAGCCACCAGAACAGAATATATATGTGGCAAAGCCACCAGATTGCAGCGAG
*
74702751 GCTGC
66 GCTAC
74702756 CAGA
1 CAGA
74702760 ACACTTCCTC
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
67 36 0.56
68 1 0.02
69 2 0.03
71 25 0.39
ACGTcount: A:0.31, C:0.23, G:0.27, T:0.19
Consensus pattern (70 bp):
CAGATATTGTGACGAAGCCACCAGAACAGAATATATATGTGGCAAAGCCACCAGATTGCAGCGAG
GCTAC
Found at i:74704428 original size:46 final size:45
Alignment explanation
Indices: 74704372--74704541 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 45
74704362 TGGTTGAGCA
*
74704372 TCCGAACTCGTTAAGTTGAGTCCGAGTTCACATATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGCGAA-G
** * * *
74704418 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACATATG-GA-T-GCGAAG
* *
74704465 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGCGAA-G
* *
74704511 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCAC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC
74704542 TTAGGGGCGG
Statistics
Matches: 101, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 59 0.58
47 32 0.32
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGCGAAG
Found at i:74704528 original size:93 final size:93
Alignment explanation
Indices: 74704369--74704539 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
74704359 GGATGGTTGA
* *
74704369 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACATATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACATATGGATGCGAACGCCCGAACTCGTTGAGT
74704434 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * *
74704462 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACATATGGATGCGAACGCCCGAACTCGTTGAGT
74704527 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
74704540 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACATATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Done.