Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 22 of 297
Found at i:7579597 original size:39 final size:39
Alignment explanation
Indices: 7579554--7579639 Score: 102
Period size: 39 Copynumber: 2.2 Consensus size: 39
7579544 ACTTAATGTG
* *
7579554 TAGCAGGCCTCGTGTCAGTGATAAATTTAG-GTTTATACC
1 TAGCAGGCCTCGTGCCAGTG-TAAAGTTAGAGTTTATACC
* * * *
7579593 TAGCAGGCCTTGTGCCGGTGTTAAGTTCGAGTTTATACC
1 TAGCAGGCCTCGTGCCAGTGTAAAGTTAGAGTTTATACC
7579632 TAGCAGGC
1 TAGCAGGC
7579640 AAATTGCCGG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
38 6 0.15
39 34 0.85
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (39 bp):
TAGCAGGCCTCGTGCCAGTGTAAAGTTAGAGTTTATACC
Found at i:7589844 original size:3 final size:3
Alignment explanation
Indices: 7589838--7589865 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7589828 ATAGATGATG
7589838 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7589866 GAAAAAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:7591526 original size:97 final size:96
Alignment explanation
Indices: 7591417--7591593 Score: 230
Period size: 97 Copynumber: 1.8 Consensus size: 96
7591407 GATCTGATTT
* * * * * * *
7591417 GTAATTTCTAGCTTTAATTTGTTCCACTGCAACTTTAGGGAAATGAGATTTGCTATCTTCAATCT
1 GTAATTTCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATCTGCTATATTCAATCT
7591482 GCTCCTACTGCAACTTAAGGGAGATAAGACTC
66 GCTCC-ACTGCAACTTAAGGGAGATAAGACTC
* * *
7591514 GTAACTTT-TAGCTTCAATCTGCTCTACTGCAACTTCAGGGAAATAAGATCTGCTATATTTAGTC
1 GTAA-TTTCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATCTGCTATATTCAATC
*
7591578 TGCTCCGCTGCAACTT
65 TGCTCCACTGCAACTT
7591594 TAGAATGATA
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
96 9 0.13
97 56 0.82
98 3 0.04
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (96 bp):
GTAATTTCTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATCTGCTATATTCAATCT
GCTCCACTGCAACTTAAGGGAGATAAGACTC
Found at i:7591700 original size:143 final size:141
Alignment explanation
Indices: 7591473--7592221 Score: 740
Period size: 143 Copynumber: 5.3 Consensus size: 141
7591463 GATTTGCTAT
* * * *
7591473 CTTCAATCTGCTCCTACTGCAACTTAAGGGAGATAAGA-CT--CGTAACTTT-TAGCTTCAATCT
1 CTTCAATCTGCTCC-ACTGCAACTTTAGGAAGATAAGATCTGCCATAA-TTTGTAGCTTTAATCT
* * * * * * * *
7591534 GCTCTACTGCAACTTCAGGGAAATAAGATCTGCTATATTTAGTCTGCTCCGCTGCAACTTTAGAA
64 GTTCCACTGCAACTTCAAGGAAATAAGAT-TGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGA
*
7591599 TGATAAGGCTGATGG
128 -GATAAGGCTGGTGG
* * * *
7591614 CTTCAGTCTGCTCCACTGCAACTTTAGGAAGATAAGATCTGCCACAATTTGTAACTTTAATCTAT
1 CTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGT
*
7591679 TCCACTGCAACGTCAAGGAAATAAGATTTGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAG
66 TCCACTGCAACTTCAAGGAAATAAGA-TTGCTGTCTTCAGTCTGCTCCGCTGCAACTTCA-GGAG
*
7591744 ATAAGGCTAGTGG
129 ATAAGGCTGGTGG
* * * * * *
7591757 CTTCAATCTGCTCCACTACAACTTGAGGAAGATAATATTTGCTATAATTTGTAGCTTCAATCTGT
1 CTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGT
* * * ** ** *
7591822 TCCATTGCAACTTTAAGGAAATAAAATTCGCTGTCTTCAGTCTGCTCTTCTATAACTTTAGGGAG
66 TCCACTGCAACTTCAAGGAAATAAGATT-GCTGTCTTCAGTCTGCTCCGCTGCAACTTCA-GGAG
*
7591887 ACAAGGCTGGTGG
129 ATAAGGCTGGTGG
* * * * * * ** * *
7591900 ATTCAATGTGCTTCACTACAACTTCAGGGAGATAAGAT-TCGCCATGGTTTGCAGCTTGAATCTG
1 CTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCT-GCCATAATTTGTAGCTTTAATCTG
* * * * *
7591964 TTCCAGTGCAATTTTAGGGAAATAAGATTCGCTGTCTTTAGTCTGCTCCGCTGCAACTTCAAGGA
65 TTCCACTGCAACTTCAAGGAAATAAGATT-GCTGTCTTCAGTCTGCTCCGCTGCAACTTC-AGGA
7592029 GATAAGGCTGGTGG
128 GATAAGGCTGGTGG
* * * * * *
7592043 CTTCAATTTGCTCCACTGCAAGTTAAGGAAGATAACATCTACTATAATTTGTAGCTTTAATCTGT
1 CTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGT
* * * * * * * *
7592108 TCCACTGCAACGTCAGGGAAA-ATA-TTTTCTGTATTCAGTCAGCTCCACTACAACTTCAGAGAG
66 TCCACTGCAACTTCAAGGAAATA-AGATTGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAG-GAG
7592171 ATAAGGCTGGTGG
129 ATAAGGCTGGTGG
*
7592184 CTTCAATCTGTTCCACTGCAACTTTA-GAGAGATAAGAT
1 CTTCAATCTGCTCCACTGCAACTTTAGGA-AGATAAGAT
7592222 TCGCCATGGT
Statistics
Matches: 503, Mismatches: 92, Indels: 26
0.81 0.15 0.04
Matches are distributed among these distances:
140 25 0.05
141 85 0.17
142 9 0.02
143 379 0.75
144 5 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (141 bp):
CTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGT
TCCACTGCAACTTCAAGGAAATAAGATTGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGAGAT
AAGGCTGGTGG
Found at i:7591881 original size:286 final size:285
Alignment explanation
Indices: 7591473--7592227 Score: 833
Period size: 286 Copynumber: 2.7 Consensus size: 285
7591463 GATTTGCTAT
* * * * *
7591473 CTTCAATCTGCTCCTACTGCAACTTAAGGGAGATAAGACTCG-TA-ACTTT-TAGCTTCAATCTG
1 CTTCAATCTGCTCC-ACTGCAACTTAAGGAAGATAACATTTGCTATAATTTGTAGCTTCAATCTG
* * * * * * * * *
7591535 CTCTACTGCAACTTCAGGGAAATAAGA-TCTGCTATATTTAGTCTGCTCCGCTGCAACTTTAGAA
65 TTCCACTGCAACTTTAAGGAAATAAAATTC-GCTGTATTCAGTCTGCTCCACTACAACTTTAGAA
* *
7591599 TGATAAGGCTGATGGCTTCAGTCTGCTCCACTGCAACTTTAGGAAGATAAGA-TCTGCCACAATT
129 -GATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATTC-GCCACAATT
* * *
7591663 TGTAACTTTAATCTATTCCACTGCAACGTCAAGGAAATAAGATTTGCTGTCTTCAGTCTGCTCCG
192 TGCAACTTGAATCTATTCCACTGCAACGTCAAGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCG
*
7591728 CTGCAACTTCAGGGAGATAAGGCTAGTGG
257 CTGCAACTTCAAGGAGATAAGGCTAGTGG
* * *
7591757 CTTCAATCTGCTCCACTACAACTTGAGGAAGATAATATTTGCTATAATTTGTAGCTTCAATCTGT
1 CTTCAATCTGCTCCACTGCAACTTAAGGAAGATAACATTTGCTATAATTTGTAGCTTCAATCTGT
* * ** * *
7591822 TCCATTGCAACTTTAAGGAAATAAAATTCGCTGTCTTCAGTCTGCTCTTCTATAACTTTAGGGAG
66 TCCACTGCAACTTTAAGGAAATAAAATTCGCTGTATTCAGTCTGCTCCACTACAACTTTA-GAAG
* * * * * * * ***
7591887 ACAAGGCTGGTGGATTCAATGTGCTTCACTACAACTTCAGGGAGATAAGATTCGCCATGGTTTGC
130 ATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATTCGCCACAATTTGC
* * * ** * * *
7591952 AGCTTGAATCTGTTCCAGTGCAATTTTAGGGAAATAAGATTCGCTGTCTTTAGTCTGCTCCGCTG
195 AACTTGAATCTATTCCACTGCAACGTCAAGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTG
*
7592017 CAACTTCAAGGAGATAAGGCTGGTGG
260 CAACTTCAAGGAGATAAGGCTAGTGG
* * * * *
7592043 CTTCAATTTGCTCCACTGCAAGTTAAGGAAGATAACATCTACTATAATTTGTAGCTTTAATCTGT
1 CTTCAATCTGCTCCACTGCAACTTAAGGAAGATAACATTTGCTATAATTTGTAGCTTCAATCTGT
* * * * ** * *
7592108 TCCACTGCAAC-GTCAGGGAA-AATATTTTCTGTATTCAGTCAGCTCCACTACAACTTCAGAGAG
66 TCCACTGCAACTTTAAGGAAATAAAATTCGCTGTATTCAGTCTGCTCCACTACAACTTTAGA-AG
*
7592171 ATAAGGCTGGTGGCTTCAATCTGTTCCACTGCAACTTTA-GAGAGATAAGATTCGCCA
130 ATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTTAGGA-AGATAAGATTCGCCA
7592228 TGGTATATTT
Statistics
Matches: 387, Mismatches: 76, Indels: 16
0.81 0.16 0.03
Matches are distributed among these distances:
283 23 0.06
284 94 0.24
285 10 0.03
286 254 0.66
287 6 0.02
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (285 bp):
CTTCAATCTGCTCCACTGCAACTTAAGGAAGATAACATTTGCTATAATTTGTAGCTTCAATCTGT
TCCACTGCAACTTTAAGGAAATAAAATTCGCTGTATTCAGTCTGCTCCACTACAACTTTAGAAGA
TAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTTAGGAAGATAAGATTCGCCACAATTTGCA
ACTTGAATCTATTCCACTGCAACGTCAAGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGC
AACTTCAAGGAGATAAGGCTAGTGG
Found at i:7599913 original size:3 final size:3
Alignment explanation
Indices: 7599900--7599958 Score: 109
Period size: 3 Copynumber: 19.3 Consensus size: 3
7599890 AAAATGCATC
7599900 AAT AGAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7599946 AAT AAT AAT AAT A
1 AAT AAT AAT AAT A
7599959 GTAAGAAAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 52 0.95
4 3 0.05
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7603928 original size:39 final size:39
Alignment explanation
Indices: 7603833--7604172 Score: 449
Period size: 39 Copynumber: 8.6 Consensus size: 39
7603823 TTGAATGATG
*
7603833 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
7603871 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
*
7603912 TCCGGGCTAAGCCCGAAGGCATTCGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
7603951 TGCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
7603990 TCCGGGCTAAGCCCGAAGGCATTCGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
7604029 TGCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
7604068 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
7604107 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
7604146 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
7604173 AACGAGGAGC
Statistics
Matches: 272, Mismatches: 22, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
39 202 0.74
40 58 0.21
41 11 0.04
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:7604194 original size:79 final size:79
Alignment explanation
Indices: 7603885--7604205 Score: 334
Period size: 78 Copynumber: 4.1 Consensus size: 79
7603875 GGACTAAGAT
* * **
7603885 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTCGTGCGAGAT-ACTA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TGACTA
* * *
7603949 ATTGCGGGCTAAG-C
65 AATCCGGGTTAAGTC
* * **
7603963 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTCGTGCGAGAT-ACTA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TGACTA
* * *
7604027 ATTGCGGGCTAAG-C
65 AATCCGGGTTAAGTC
* ** *
7604041 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
7604106 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
*
7604120 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* * *
7604182 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAGTC
7604199 CCGAAGG
1 CCGAAGG
7604206 TACGTGATTT
Statistics
Matches: 225, Mismatches: 12, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
77 1 0.00
78 152 0.68
79 47 0.21
80 25 0.11
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.23
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAGTC
Found at i:7611968 original size:39 final size:39
Alignment explanation
Indices: 7611872--7612094 Score: 224
Period size: 39 Copynumber: 5.6 Consensus size: 39
7611862 TTGAATGATG
*
7611872 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
7611910 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
7611951 TCCGGGCTAAGCTCGAAGGCATTCGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
7611990 TGCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
7612029 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
7612068 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
7612095 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 20, Indels: 13
0.83 0.11 0.07
Matches are distributed among these distances:
39 87 0.55
40 58 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:7612010 original size:78 final size:80
Alignment explanation
Indices: 7611872--7612094 Score: 244
Period size: 79 Copynumber: 2.8 Consensus size: 80
7611862 TTGAATGATG
* * * * *
7611872 TCCGGGCTAAGTCCCGAAGGC-TT-GTGCTAAGTGACAATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
7611934 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* **
7611951 TCCGGGCTAAG-CTCGAAGGCATTCGTGCGAGA-TACTA-ATTGCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCAT
*
7612012 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* * *
7612029 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
7612094 G
66 G
7612095 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 14, Indels: 17
0.80 0.09 0.11
Matches are distributed among these distances:
78 45 0.37
79 55 0.45
80 20 0.17
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:7629510 original size:14 final size:15
Alignment explanation
Indices: 7629488--7629517 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7629478 GAATATTAAA
7629488 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
7629503 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
7629517 A
1 A
7629518 AGTCAAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:7636201 original size:43 final size:42
Alignment explanation
Indices: 7636136--7636219 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 42
7636126 CATAAGCTCG
7636136 TACAATGCCATATCCCAGACATGGTCTTACACGTAATCACAA
1 TACAATGCCATATCCCAGACATGGTCTTACACGTAATCACAA
* * *
7636178 TACAATGCCAATGTCCCATACATGGTCTTACATGTAATCACA
1 TACAATGCC-ATATCCCAGACATGGTCTTACACGTAATCACA
7636220 TCTTGGTAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
42 9 0.24
43 29 0.76
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.26
Consensus pattern (42 bp):
TACAATGCCATATCCCAGACATGGTCTTACACGTAATCACAA
Found at i:7636408 original size:35 final size:35
Alignment explanation
Indices: 7636342--7636408 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 35
7636332 TTCATAACAG
* *
7636342 TTTAATAACAAATAAACGTTTATAATTCAATTCAA
1 TTTAATAACAAATAAACATTTATAATACAATTCAA
* *
7636377 TTTAATAATAAATAAGCATTTATAATACAATT
1 TTTAATAACAAATAAACATTTATAATACAATT
7636409 TAAATACGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.49, C:0.09, G:0.03, T:0.39
Consensus pattern (35 bp):
TTTAATAACAAATAAACATTTATAATACAATTCAA
Found at i:7648079 original size:46 final size:46
Alignment explanation
Indices: 7648027--7648151 Score: 157
Period size: 46 Copynumber: 2.7 Consensus size: 46
7648017 TGAGACGAGT
* *
7648027 GCTAGTGTAAGACATGTCTAGGACATGCTTCAGCCT-CAAGACG-TAA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAG-CTACAAGAGGAT-A
7648073 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCTACAAGAGGATA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCTACAAGAGGATA
*
7648119 G-TCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCT-AGTGTAAGA-CATGTCTAGGACAT-GCATC
7648152 GACTTGAGAT
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
45 3 0.04
46 49 0.69
47 14 0.20
48 5 0.07
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCAGCTACAAGAGGATA
Found at i:7649164 original size:40 final size:42
Alignment explanation
Indices: 7649120--7649199 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 42
7649110 AGGTTTTTGC
* *
7649120 ACACGGGCTA-GGACACGGGCATGTCAT-GGCCGTGTGAAGG
1 ACACGGGCCAGGGACACGAGCATGTCATAGGCCGTGTGAAGG
**
7649160 ACACGGGCCAGGGACACGAGCATGTGTTAGGCCGTGTGAA
1 ACACGGGCCAGGGACACGAGCATGTCATAGGCCGTGTGAA
7649200 AACCCTTGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 9 0.26
41 14 0.41
42 11 0.32
ACGTcount: A:0.24, C:0.23, G:0.39, T:0.15
Consensus pattern (42 bp):
ACACGGGCCAGGGACACGAGCATGTCATAGGCCGTGTGAAGG
Found at i:7656133 original size:3 final size:3
Alignment explanation
Indices: 7656125--7656158 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
7656115 GGATGATTTA
* *
7656125 ATT ATT ATT ATT ATC ATT ATT ATT ATT ATA ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
7656159 AGTATGTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:7658272 original size:27 final size:26
Alignment explanation
Indices: 7658200--7658315 Score: 117
Period size: 27 Copynumber: 4.3 Consensus size: 26
7658190 ATGGGGGAAG
*
7658200 TGTTCTGGTGGCTATGCTACCAATATCT
1 TGTTCTGGTGGCTATGCCA-CAATAT-T
*
7658228 AT-TTCTAGTGGCTATGCCACAAATATT
1 -TGTTCTGGTGGCTATGCCAC-AATATT
* *
7658255 TGTTCTGGTGGCTCTGCCACAATATC
1 TGTTCTGGTGGCTATGCCACAATATT
* * *
7658281 TGTATCTGGTGACTCTGTCACAATATT
1 TGT-TCTGGTGGCTATGCCACAATATT
7658308 TGTTCTGG
1 TGTTCTGG
7658316 CAGCCCTGCT
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
26 14 0.18
27 41 0.54
28 20 0.26
29 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.39
Consensus pattern (26 bp):
TGTTCTGGTGGCTATGCCACAATATT
Found at i:7658303 original size:54 final size:54
Alignment explanation
Indices: 7658200--7658315 Score: 144
Period size: 54 Copynumber: 2.1 Consensus size: 54
7658190 ATGGGGGAAG
* * *
7658200 TGTTCTGGTGGCTATGCTACCAATATCTATTTCTAGTGGCTATGCCACAAATATT
1 TGTTCTGGTGGCTATGCCACCAATATCTATATCTAGTGACTATGCCAC-AATATT
* * * * *
7658255 TGTTCTGGTGGCTCTGCCA-CAATATCTGTATCTGGTGACTCTGTCACAATATT
1 TGTTCTGGTGGCTATGCCACCAATATCTATATCTAGTGACTATGCCACAATATT
7658308 TGTTCTGG
1 TGTTCTGG
7658316 CAGCCCTGCT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 14 0.26
54 22 0.42
55 17 0.32
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.39
Consensus pattern (54 bp):
TGTTCTGGTGGCTATGCCACCAATATCTATATCTAGTGACTATGCCACAATATT
Found at i:7667273 original size:28 final size:28
Alignment explanation
Indices: 7667236--7667350 Score: 121
Period size: 27 Copynumber: 4.2 Consensus size: 28
7667226 GGGGGAAGTG
*
7667236 TTCTGGTGGCTATGCTACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
7667264 TTCTGCTGGCTATGCCACAAATATCTG-
1 TTCTGGTGGCTATGCCACAAATATCTGT
* *
7667291 TTCTGGTAGCTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
* * * * *
7667318 ATCTAGTGACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCTATGCCACAAATATCTGT
7667344 TTCTGGT
1 TTCTGGT
7667351 AGCCCTGCTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
26 13 0.18
27 36 0.49
28 25 0.34
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:7667349 original size:53 final size:55
Alignment explanation
Indices: 7667234--7667358 Score: 148
Period size: 53 Copynumber: 2.3 Consensus size: 55
7667224 ATGGGGGAAG
* * * * *
7667234 TGTTCTGGTGGCTATGCTACAAATATCTGTTTCTGCTGGCTATGCCACAAATATC
1 TGTTCTGGTAGCTCTGCCACAAATATCTGTATCTGCTGACTATGCCACAAATATC
* *
7667289 TGTTCTGGTAGCTCTGCCAC-AATATCTGTATCTAG-TGACTCTGTCAC-AATATC
1 TGTTCTGGTAGCTCTGCCACAAATATCTGTATCT-GCTGACTATGCCACAAATATC
*
7667342 TGTTCTGGTAGCCCTGC
1 TGTTCTGGTAGCTCTGC
7667359 TGCAAATTCT
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
53 22 0.36
54 21 0.34
55 18 0.30
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (55 bp):
TGTTCTGGTAGCTCTGCCACAAATATCTGTATCTGCTGACTATGCCACAAATATC
Found at i:7683667 original size:46 final size:48
Alignment explanation
Indices: 7683563--7683682 Score: 154
Period size: 48 Copynumber: 2.5 Consensus size: 48
7683553 TGTCTTCGAC
** * *
7683563 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
* * *
7683611 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
*
7683657 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
7683683 CTGTCCCGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 27 0.43
47 1 0.02
48 35 0.56
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
Found at i:7694573 original size:31 final size:31
Alignment explanation
Indices: 7694530--7694608 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
7694520 TTTAACGGTT
7694530 ATTGGGCCGAAGCCTTTTCATAAATCATATC
1 ATTGGGCCGAAGCCTTTTCATAAATCATATC
* * *
7694561 ATTGGGCTGAAGCTTTTTCATAAATCATTTC
1 ATTGGGCCGAAGCCTTTTCATAAATCATATC
*
7694592 ACTGGGCCGAAGCCTTT
1 ATTGGGCCGAAGCCTTT
7694609 ACTGTAAACG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (31 bp):
ATTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:7694677 original size:42 final size:42
Alignment explanation
Indices: 7694630--7694723 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 42
7694620 TATGGCCCAT
* **
7694630 AAGCCCATTTCAATATCACATGTAATGTCAATGGATATATGC
1 AAGCCCATTTCAATATCACATGAAATACCAATGGATATATGC
* * *
7694672 AAGCCCTTTTCAATATCATATGAAATACCAATGGATGTATGC
1 AAGCCCATTTCAATATCACATGAAATACCAATGGATATATGC
7694714 AAGCCCATTT
1 AAGCCCATTT
7694724 GGGGATACTA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (42 bp):
AAGCCCATTTCAATATCACATGAAATACCAATGGATATATGC
Found at i:7694940 original size:26 final size:26
Alignment explanation
Indices: 7694856--7694991 Score: 199
Period size: 26 Copynumber: 5.3 Consensus size: 26
7694846 CTGGAGGCCT
7694856 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
7694880 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
7694905 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
7694931 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
7694957 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
7694983 AGCCCTTTT
1 AGCCCTTTT
7694992 GCACTTCCTC
Statistics
Matches: 101, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 33 0.33
26 58 0.57
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:7694980 original size:52 final size:51
Alignment explanation
Indices: 7694856--7694991 Score: 233
Period size: 52 Copynumber: 2.7 Consensus size: 51
7694846 CTGGAGGCCT
7694856 AGCCTCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
7694905 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-A
7694957 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
7694992 GCACTTCCTC
Statistics
Matches: 83, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
48 5 0.06
49 7 0.08
50 10 0.12
51 25 0.30
52 36 0.43
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (51 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
Found at i:7695856 original size:27 final size:27
Alignment explanation
Indices: 7695797--7695858 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
7695787 CATATTCATT
*
7695797 ATTTTACCATATAGGGGTATTACGGTC
1 ATTTTACCATACAGGGGTATTACGGTC
* *
7695824 ACTTTACCCTACAGGGGCT-TTACGGTC
1 ATTTTACCATACAGGGG-TATTACGGTC
*
7695851 TTTTTACC
1 ATTTTACC
7695859 TAATAGGCAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (27 bp):
ATTTTACCATACAGGGGTATTACGGTC
Found at i:7695942 original size:27 final size:27
Alignment explanation
Indices: 7695890--7696191 Score: 200
Period size: 27 Copynumber: 11.1 Consensus size: 27
7695880 TTCATCCTAC
* * * *
7695890 AAGGGTGTTTTGGTAAATCTACAAACT
1 AAGGGTATTTCGGTAATTTTACAAACT
* **
7695917 AAGGGTATTTCAGTAATTTTGTAAACT
1 AAGGGTATTTCGGTAATTTTACAAACT
** ** * *
7695944 AATTGTATTTCTATAATTTTTAGAAAGT
1 AAGGGTATTTCGGTAA-TTTTACAAACT
** *
7695972 CAAGGGTATTTTTGTAACTTTGTA-AATC-
1 -AAGGGTATTTCGGTAA-TTT-TACAAACT
* * *
7696000 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTCGGTAATTTTACAAACT
* *
7696027 GAGGGTATTTCGGTAATTTCACAAAC-
1 AAGGGTATTTCGGTAATTTTACAAACT
* *
7696053 CAGTGGTATTTTGGTAATTTTACAAACT
1 AAG-GGTATTTCGGTAATTTTACAAACT
* * * *
7696081 AGGGGTATTTTGGTAATTTTACAAGTCG
1 AAGGGTATTTCGGTAATTTTACAA-ACT
*
7696109 AA-GGTATTTCAGTAATTTTACAAA-T
1 AAGGGTATTTCGGTAATTTTACAAACT
* * * *
7696134 CGAGAGTATTTCAGTATTTTTACAAACT
1 -AAGGGTATTTCGGTAATTTTACAAACT
*
7696162 AAGGGTATTTCGGTAATTTTAGTAAACT
1 AAGGGTATTTCGGTAATTTTA-CAAACT
7696190 AA
1 AA
7696192 AATATTCTAA
Statistics
Matches: 213, Mismatches: 50, Indels: 23
0.74 0.17 0.08
Matches are distributed among these distances:
25 2 0.01
26 8 0.04
27 165 0.77
28 19 0.09
29 17 0.08
30 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTCGGTAATTTTACAAACT
Found at i:7696093 original size:81 final size:81
Alignment explanation
Indices: 7696000--7696182 Score: 242
Period size: 81 Copynumber: 2.3 Consensus size: 81
7695990 TTTGTAAATC
* * * *
7696000 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-CCAGTGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTCACAAATCCAG-AGTATTT
**
7696064 TGGTAATTTTACAAACT
65 CAGTAATTTTACAAACT
* * *
7696081 AGGGGTATTTTGGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGAGTATTTC
1 AGGGGTATTTTGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTCACAAATCCAGAGTATTTC
*
7696146 AGTATTTTTACAAACT
66 AGTAATTTTACAAACT
* *
7696162 AAGGGTATTTCGGTAATTTTA
1 AGGGGTATTTTGGTAATTTTA
7696183 GTAAACTAAA
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
81 86 0.97
82 3 0.03
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTCACAAATCCAGAGTATTTC
AGTAATTTTACAAACT
Found at i:7699528 original size:32 final size:32
Alignment explanation
Indices: 7699492--7699603 Score: 152
Period size: 32 Copynumber: 3.5 Consensus size: 32
7699482 TGGGCCAGGT
* *
7699492 CATGTGGGCCACACGGGCAAGGCCAATTTGGG
1 CATGTAGGCCACACGGGCAAGGCCAATCTGGG
* * *
7699524 CATGTAGGCCACAAGAGCAAGGGCAATCTGGG
1 CATGTAGGCCACACGGGCAAGGCCAATCTGGG
*
7699556 CATGTAGGCCACACGGGTAAGGCCAATCTGGG
1 CATGTAGGCCACACGGGCAAGGCCAATCTGGG
* *
7699588 CTTGCAGGCCACACGG
1 CATGTAGGCCACACGG
7699604 TCATGTGGGC
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 69 1.00
ACGTcount: A:0.25, C:0.26, G:0.35, T:0.14
Consensus pattern (32 bp):
CATGTAGGCCACACGGGCAAGGCCAATCTGGG
Found at i:7700392 original size:19 final size:20
Alignment explanation
Indices: 7700341--7700392 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
7700331 AAGGGCTATT
*
7700341 TTGTAAA-GTTGTAAAATAAG
1 TTGTAAATG-TGTGAAATAAG
7700361 TTGTAAATGTGTGAAATAA-
1 TTGTAAATGTGTGAAATAAG
7700380 TTG-AAATTGTGTG
1 TTGTAAA-TGTGTG
7700393 TTGCTATAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 3 0.10
19 9 0.31
20 16 0.55
21 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (20 bp):
TTGTAAATGTGTGAAATAAG
Found at i:7701187 original size:97 final size:98
Alignment explanation
Indices: 7701073--7701307 Score: 255
Period size: 98 Copynumber: 2.4 Consensus size: 98
7701063 CGGCCACATT
* *
7701073 ATGAAAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCTAGATATGCAAGAT-AGTGTA
1 ATGAAAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATATGAAAG-TCAGTGTA
* * *
7701136 AGACCTGTCTGGGATATGGCATCGACACCGATAG
65 AGACCTATCTGGAACATGGCATCGACACCGATAG
* * * * *
7701170 ATGAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATTGGCTTCGATATATGAAAGTCAGTGTAA
1 ATGAAAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATATGAAAGTCAGTGTAA
* ***
7701235 GACCTATCTGGAACATGGCATCCACTTAGATATG
66 GACCTATCTGGAACATGGCATCGACACCGATA-G
* * *
7701269 -TG--AGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 ATGAAAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGC
7701308 ATCGTACTCT
Statistics
Matches: 115, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
96 12 0.10
97 50 0.43
98 52 0.45
99 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (98 bp):
ATGAAAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATATGAAAGTCAGTGTAA
GACCTATCTGGAACATGGCATCGACACCGATAG
Found at i:7701267 original size:49 final size:49
Alignment explanation
Indices: 7701072--7701304 Score: 190
Period size: 49 Copynumber: 4.8 Consensus size: 49
7701062 TCGGCCACAT
*
7701072 TATGAAAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGC-CTCTAG--A
1 TATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATC--CACT-TAGATA
* ** * * ***
7701120 TATGCAAGATAGTGTAAGACCTGTCTGGGATATGGCATCGACACCGATA
1 TATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCCACTTAGATA
* * *** *
7701169 GATGAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATTGGCTTCGATA
1 TATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCCACTTAGATA
* * *
7701218 TATGAAAGTCAGTGTAAGACCTATCTGGAACATGGCATCCACTTAGATA
1 TATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCCACTTAGATA
* * * *
7701267 TGTG--AGCTAGTGTAAGACCATGTTTGGAACATGGCATC
1 TATGAAAGCCAGTGTAAGACC-TGTCTGGGACATGGCATC
7701305 GGCATCGTAC
Statistics
Matches: 147, Mismatches: 33, Indels: 10
0.77 0.17 0.05
Matches are distributed among these distances:
47 14 0.10
48 45 0.31
49 88 0.60
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (49 bp):
TATGAAAGCCAGTGTAAGACCTGTCTGGGACATGGCATCCACTTAGATA
Found at i:7716201 original size:34 final size:34
Alignment explanation
Indices: 7716163--7716240 Score: 104
Period size: 34 Copynumber: 2.3 Consensus size: 34
7716153 GTGGCAGTCT
* * *
7716163 AGTATCAGTGTTGGCCTTAGCCCA-TAGCAGTAAC
1 AGTATCAGTATGGGCCTTAGCCCATTA-CAATAAC
*
7716197 AGTATCAATATGGGCCTTAGCCCATTACAATAAC
1 AGTATCAGTATGGGCCTTAGCCCATTACAATAAC
7716231 AGTATCAGTA
1 AGTATCAGTA
7716241 ATGCAATAGA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
34 36 0.95
35 2 0.05
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (34 bp):
AGTATCAGTATGGGCCTTAGCCCATTACAATAAC
Found at i:7716296 original size:22 final size:23
Alignment explanation
Indices: 7716259--7716301 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
7716249 GAAATTCTAC
7716259 CCATCCATCCCCTACACTCCACT
1 CCATCCATCCCCTACACTCCACT
7716282 CCATCCAT-CCCTACACTCCA
1 CCATCCATCCCCTACACTCCA
7716302 TGTGGGGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.23, C:0.56, G:0.00, T:0.21
Consensus pattern (23 bp):
CCATCCATCCCCTACACTCCACT
Found at i:7724061 original size:21 final size:21
Alignment explanation
Indices: 7724036--7724099 Score: 53
Period size: 21 Copynumber: 3.0 Consensus size: 21
7724026 TATAGTATAC
7724036 ATAAAATACAAATAATTTAAT
1 ATAAAATACAAATAATTTAAT
7724057 AT-AAATAACATAAATAA--TAAT
1 ATAAAAT-AC--AAATAATTTAAT
* * *
7724078 ATAAATTACAAGTAGTTTAAT
1 ATAAAATACAAATAATTTAAT
7724099 A
1 A
7724100 ATGATATATA
Statistics
Matches: 34, Mismatches: 3, Indels: 12
0.69 0.06 0.24
Matches are distributed among these distances:
19 4 0.12
20 4 0.12
21 17 0.50
22 3 0.09
23 6 0.18
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (21 bp):
ATAAAATACAAATAATTTAAT
Found at i:7724124 original size:30 final size:27
Alignment explanation
Indices: 7724069--7724129 Score: 77
Period size: 30 Copynumber: 2.1 Consensus size: 27
7724059 AAATAACATA
* *
7724069 AATAATAATATAAATTACAAGTAGTTT
1 AATAATAATATAAAATACAAATAGTTT
7724096 AATAATGATATATAAAAATACAAATAGTTT
1 AATAAT-A-ATAT-AAAATACAAATAGTTT
7724126 AATA
1 AATA
7724130 CACAAGTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 6 0.21
28 1 0.03
29 4 0.14
30 18 0.62
ACGTcount: A:0.56, C:0.03, G:0.07, T:0.34
Consensus pattern (27 bp):
AATAATAATATAAAATACAAATAGTTT
Found at i:7725865 original size:44 final size:43
Alignment explanation
Indices: 7725805--7726044 Score: 203
Period size: 45 Copynumber: 5.4 Consensus size: 43
7725795 TAGTCTTACA
* * * * *
7725805 GCAACTTTAGGAAGATAAGGTTTGTGACTTCAACCTGCTCCACT
1 GCAACTTCAGGGAGATAAGATTTGT-ACTTTAATCTGCTCCACT
* * *
7725849 GCATCTTCAGGGAGATAAGGATTATG-GCTTTGATCTGCTCCACT
1 GCAACTTCAGGGAGATAA-GATT-TGTACTTTAATCTGCTCCACT
* * * * *
7725893 GGAACTTCAGGGAGATAAGATCTGCCATCTTTAGTCTGCTCCATT
1 GCAACTTCAGGGAGATAAGATTTG-TA-CTTTAATCTGCTCCACT
* * *
7725938 GCAACTTTAGGGAGATAAGACTTGCTATCTTTAGTCTGCTCCACT
1 GCAACTTCAGGGAGATAAGATTTG-TA-CTTTAATCTGCTCCACT
* * ** * * *
7725983 GCAAATTCAAGGAGATAAGATTACTACTTCAACCTGCTTCACT
1 GCAACTTCAGGGAGATAAGATTTGTACTTTAATCTGCTCCACT
7726026 GCAACTTCAGGGAGATAAG
1 GCAACTTCAGGGAGATAAG
7726045 GTTTTCAATC
Statistics
Matches: 158, Mismatches: 33, Indels: 11
0.78 0.16 0.05
Matches are distributed among these distances:
42 2 0.01
43 33 0.21
44 47 0.30
45 74 0.47
46 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (43 bp):
GCAACTTCAGGGAGATAAGATTTGTACTTTAATCTGCTCCACT
Found at i:7726043 original size:88 final size:86
Alignment explanation
Indices: 7725831--7726131 Score: 248
Period size: 88 Copynumber: 3.4 Consensus size: 86
7725821 AAGGTTTGTG
* * ** *
7725831 ACTTCAACCTGCTCCACTGCATCTTCAGGGAGATAAGGATTATGGCTTT-GATCTGCTCCACTGG
1 ACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAA-GATTCTATCTTTAG-TCTGCTCCACTGC
* * *
7725895 AACTTCAGGGAGATAAGATCTGCC
64 AACTTCAAGGAGATAAGAT-TACT
* ** * *
7725919 ATCTTTAGTCTGCTCCATTGCAACTTTAGGGAGATAAGACTTGCTATCTTTAGTCTGCTCCACTG
1 A-CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGA-TT-CTATCTTTAGTCTGCTCCACTG
*
7725984 CAAATTCAAGGAGATAAGATTACT
63 CAACTTCAAGGAGATAAGATTACT
* * * * *
7726008 ACTTCAACCTGCTTCACTGCAACTTCAGGGAGATAAGGTTTTCAATCTTCAGTCTGCTTCC-TTG
1 ACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAA-G-ATTCTATCTTTAGTCTGC-TCCACTG
* * * * *
7726072 CTACCTCAAGAAGATAAGACTAGT
63 CAACTTCAAGGAGATAAGATTACT
* * * *
7726096 -CTTCAACCTGCTCTATTGCTACTTTAGGGAGATAAG
1 ACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAG
7726132 GCTGGTGGCT
Statistics
Matches: 171, Mismatches: 35, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
86 1 0.01
87 30 0.18
88 65 0.38
89 40 0.23
90 34 0.20
91 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (86 bp):
ACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGATTCTATCTTTAGTCTGCTCCACTGCAA
CTTCAAGGAGATAAGATTACT
Found at i:7726087 original size:133 final size:134
Alignment explanation
Indices: 7725839--7726092 Score: 298
Period size: 133 Copynumber: 1.9 Consensus size: 134
7725829 TGACTTCAAC
** * * ** * *
7725839 CTGCTCCACTGCATCTTCAGGGAGATAAGGATTATGGCTTTGATCTGCTCCACTGGAACTTCAGG
1 CTGCTCCACTGCAAATTCAAGGAGATAAGGATTATGACTTCAACCTGCTCCACTGCAACTTCAGG
* * * * * *
7725904 GAGATAAGATCTGCCATCTTTAGTCTGCTCCATTGCAACTTTAGGGAGATAAGACTTGCTATCTT
66 GAGATAAGATCTGCAATCTTCAGTCTGCTCCATTGCAACCTCAAGAAGATAAGACTTGCTATCTT
7725969 TAGT
131 TAGT
*
7725973 CTGCTCCACTGCAAATTCAAGGAGATAA-GATTACT-ACTTCAACCTGCTTCACTGCAACTTCAG
1 CTGCTCCACTGCAAATTCAAGGAGATAAGGATTA-TGACTTCAACCTGCTCCACTGCAACTTCAG
* * * *
7726036 GGAGATAAGGTTTTCAATCTTCAGTCTGCTTCC-TTGCTACCTCAAGAAGATAAGACT
65 GGAGATAAGATCTGCAATCTTCAGTCTGC-TCCATTGCAACCTCAAGAAGATAAGACT
7726093 AGTCTTCAAC
Statistics
Matches: 99, Mismatches: 19, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
133 70 0.71
134 29 0.29
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (134 bp):
CTGCTCCACTGCAAATTCAAGGAGATAAGGATTATGACTTCAACCTGCTCCACTGCAACTTCAGG
GAGATAAGATCTGCAATCTTCAGTCTGCTCCATTGCAACCTCAAGAAGATAAGACTTGCTATCTT
TAGT
Found at i:7726672 original size:177 final size:177
Alignment explanation
Indices: 7726034--7726751 Score: 869
Period size: 174 Copynumber: 4.1 Consensus size: 177
7726024 CTGCAACTTC
* * * *
7726034 AGGGAGATAAGGTTTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTA--GTC
1 AGGGAGATAAGATCTTCAATATTCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTACCATC
* * * * *
7726097 TTCAACCTGCTCTATTGCTACTTTAGGGAGATAAGGCTGGTGGCTAAAATCTTCTCCCCTGCTAC
66 TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTAC
* * *
7726162 CTCGGGAAGATAAGATTCGCCATCCTCGATCTACTCTACTACTGCTT
131 CTCGGGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTGCTT
* * * * *
7726209 AGGGAGATAGGATCTTCAAT-CTCAGTCTGCTTCCTTGCTACCTCAAGAAGGTAAGACT-TCA-A
1 AGGGAGATAAGATCTTCAATATTCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTACCATC
* * * * *
7726271 TTCAGCCTGCTCCCTTTCTACCTTAG-GAAGATAAGGCTGGTGGCTAAAATCTACTCCCCTGCTA
66 TTCAACCTGCTCTCTTGCTACCTCAGAG-AGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTA
* * * * ** **
7726335 CCTTGGGAAGATGAGATTCACCACCTTTGATCTACTCCACTACTATTT
130 CCTCGGGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTGCTT
* * *
7726383 AGGGAGATAAGATCTTC-ATCATT-AGTCTGCTTCCTTGTTACCT-AAGTAATATAAGACTACAA
1 AGGGAGATAAGATCTTCAAT-ATTCAGTCTGCTTCCTTGCTACCTCAAG-AAGATAAGACTACCA
* *
7726445 TCTTCAACATGCTCTCTTGCTACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCT
64 TCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCT
* * * **
7726510 ACCTCGGGAAGATAAGATTTGCAATCTTCAATCTGCTCCACTGTTGCTT
129 ACCTCGGGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTGCTT
* * * *
7726559 AGGGAGATAAGATCTTCAATATTCAGTTTGTTTCCTTGTTACCTCAGGAAGATAAGACTACCATC
1 AGGGAGATAAGATCTTCAATATTCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTACCATC
7726624 TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTAC
66 TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTAC
* ** * * * *
7726689 ATCGAAAAGATAAGATTCTCCATCTTCAATCTACTCCACTTCTATCTC
131 CTCGGGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACT-GCTT
*
7726737 AGGGAGATGAGATCT
1 AGGGAGATAAGATCT
7726752 GTGAATTCAC
Statistics
Matches: 461, Mismatches: 69, Indels: 23
0.83 0.12 0.04
Matches are distributed among these distances:
173 6 0.01
174 175 0.38
175 19 0.04
176 110 0.24
177 133 0.29
178 18 0.04
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (177 bp):
AGGGAGATAAGATCTTCAATATTCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTACCATC
TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTAC
CTCGGGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTGCTT
Found at i:7731439 original size:19 final size:19
Alignment explanation
Indices: 7731415--7731460 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
7731405 GTGAAAAGCT
7731415 AATGCAAATG-ATGCAATG
1 AATGCAAATGCATGCAATG
*
7731433 CAATGCAAATGCATGGAATG
1 -AATGCAAATGCATGCAATG
7731453 AATGCAAA
1 AATGCAAA
7731461 AGAATGAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.46, C:0.13, G:0.22, T:0.20
Consensus pattern (19 bp):
AATGCAAATGCATGCAATG
Found at i:7732097 original size:22 final size:22
Alignment explanation
Indices: 7732072--7732116 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
7732062 TTCACTATAT
7732072 GTGGCTCGGCTCTAAAGAAAGG
1 GTGGCTCGGCTCTAAAGAAAGG
7732094 GTGGCTCGGCTCTAAAGAAAGG
1 GTGGCTCGGCTCTAAAGAAAGG
7732116 G
1 G
7732117 CACTTGAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.38, T:0.18
Consensus pattern (22 bp):
GTGGCTCGGCTCTAAAGAAAGG
Found at i:7738826 original size:18 final size:18
Alignment explanation
Indices: 7738789--7738827 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7738779 TTGGAAATCA
*
7738789 AAATTATTAAAAGATGAT
1 AAATTATTAAAAGATAAT
7738807 AAATTATTAAATAGA-AAT
1 AAATTATTAAA-AGATAAT
7738825 AAA
1 AAA
7738828 AATCATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (18 bp):
AAATTATTAAAAGATAAT
Found at i:7739140 original size:18 final size:18
Alignment explanation
Indices: 7739095--7739132 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
7739085 CAACTTTTAC
7739095 AAAGTGATTTTTGATGAA
1 AAAGTGATTTTTGATGAA
7739113 AAAGTGATTTTTGATGAA
1 AAAGTGATTTTTGATGAA
7739131 AA
1 AA
7739133 CATGATTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (18 bp):
AAAGTGATTTTTGATGAA
Found at i:7759793 original size:34 final size:34
Alignment explanation
Indices: 7759754--7759822 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
7759744 TCAGCTACCT
* *
7759754 TAGAAGAATACATATGCACTGATTAAGTATTGCA
1 TAGAAGAATAAAAATGCACTGATTAAGTATTGCA
*
7759788 TAGAAGGATAAAAATGCACTGATTAAGTATTGCA
1 TAGAAGAATAAAAATGCACTGATTAAGTATTGCA
7759822 T
1 T
7759823 CCATTAATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.42, C:0.10, G:0.19, T:0.29
Consensus pattern (34 bp):
TAGAAGAATAAAAATGCACTGATTAAGTATTGCA
Found at i:7763939 original size:30 final size:31
Alignment explanation
Indices: 7763905--7763962 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
7763895 CATTTAATCT
7763905 AACTTTGGAAAAATTACA-TTTTTCCCCCTA
1 AACTTTGGAAAAATTACACTTTTTCCCCCTA
* * *
7763935 AACTTTTGCATAATTACACTTTTTCCCC
1 AACTTTGGAAAAATTACACTTTTTCCCC
7763963 TAGGCTCGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 15 0.62
31 9 0.38
ACGTcount: A:0.29, C:0.26, G:0.05, T:0.40
Consensus pattern (31 bp):
AACTTTGGAAAAATTACACTTTTTCCCCCTA
Found at i:7771427 original size:30 final size:30
Alignment explanation
Indices: 7771382--7771441 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
7771372 ATTTAATACG
7771382 AACTTTGGCAAAATTACA-TTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTT-CCCCTA
* *
7771412 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTTCCCCTA
7771442 GGCTCGAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTTCCCCTA
Found at i:7774080 original size:25 final size:25
Alignment explanation
Indices: 7774015--7774080 Score: 64
Period size: 25 Copynumber: 2.6 Consensus size: 25
7774005 TCTCAAAAAT
* *
7774015 TTAATTAAA-TAAAAATTATTAATGA
1 TTAAATAAATTAAAAATTA-TAATAA
*
7774040 TTCAATAAATTGAAAAATTA-AATAA
1 TTAAATAAATT-AAAAATTATAATAA
7774065 TTAAATAAAATTAAAA
1 TTAAAT-AAATTAAAA
7774081 TCTAGGAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
25 20 0.59
26 6 0.18
27 8 0.24
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.35
Consensus pattern (25 bp):
TTAAATAAATTAAAAATTATAATAA
Found at i:7774720 original size:18 final size:18
Alignment explanation
Indices: 7774683--7774716 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7774673 AATCAAATAT
7774683 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
7774701 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
7774717 TAATCAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:7777663 original size:20 final size:20
Alignment explanation
Indices: 7777640--7777678 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
7777630 TAAACATGGT
7777640 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
7777660 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
7777679 TGTATTCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:7777820 original size:25 final size:24
Alignment explanation
Indices: 7777729--7777824 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
7777719 GAGGAAGTGC
* * *
7777729 AAAAGGGCTTACGCCCAAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
7777753 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
7777777 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
7777801 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
7777825 ATGATAAAGT
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
24 55 0.83
25 11 0.17
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:7782820 original size:20 final size:19
Alignment explanation
Indices: 7782795--7782835 Score: 73
Period size: 20 Copynumber: 2.1 Consensus size: 19
7782785 GTGGGAAAGG
7782795 GTAACTATGGACTTTGTAA
1 GTAACTATGGACTTTGTAA
7782814 NGTAACTATGGACTTTGTAA
1 -GTAACTATGGACTTTGTAA
7782834 GT
1 GT
7782836 GGGTTGCCGT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.37
Consensus pattern (19 bp):
GTAACTATGGACTTTGTAA
Found at i:7785822 original size:25 final size:25
Alignment explanation
Indices: 7785788--7785837 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
7785778 CCTTATAATA
*
7785788 TGAAACTGACCGTTTTGCCCCTAGG
1 TGAAAATGACCGTTTTGCCCCTAGG
7785813 TGAAAATGACCGTTTTGCCCCTAGG
1 TGAAAATGACCGTTTTGCCCCTAGG
7785838 GTTTAAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (25 bp):
TGAAAATGACCGTTTTGCCCCTAGG
Found at i:7785904 original size:20 final size:20
Alignment explanation
Indices: 7785881--7785939 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
7785871 TAAACATGGT
*
7785881 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAA
7785901 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
7785921 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
7785940 TGTATTCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:7786016 original size:24 final size:24
Alignment explanation
Indices: 7785989--7786085 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
7785979 GGAGGAAGTG
7785989 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
7786013 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
7786037 CAAAAGGGATTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
7786061 TAAAAGAGG-TTAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
7786086 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
24 54 0.84
25 10 0.16
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:7786196 original size:24 final size:23
Alignment explanation
Indices: 7786164--7786264 Score: 130
Period size: 24 Copynumber: 4.2 Consensus size: 23
7786154 TTGTTGGTAA
7786164 TTATTAAAAGGGCTTATGCCCCAG
1 TTATTAAAAGGG-TTATGCCCCAG
*
7786188 TTATCAAAAGGGTTTATGCCCCAG
1 TTATTAAAAGGG-TTATGCCCCAG
*
7786212 TTATTAAAAGGGATTTTGCCCCAG
1 TTATTAAAAGGG-TTATGCCCCAG
*
7786236 TTATTAAAAGAGGTTAGGCCTCCAG
1 TTATTAAAAG-GGTTATGCC-CCAG
7786261 TTAT
1 TTAT
7786265 ATGATAAAGC
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
24 58 0.85
25 10 0.15
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32
Consensus pattern (23 bp):
TTATTAAAAGGGTTATGCCCCAG
Found at i:7786207 original size:179 final size:179
Alignment explanation
Indices: 7785990--7786340 Score: 675
Period size: 179 Copynumber: 2.0 Consensus size: 179
7785980 GAGGAAGTGC
*
7785990 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCTAGTTATCAAAAGGGATTTTGCCCC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGATTTTGCCCC
7786055 AGTTATTAAAAGAGGTTAGGCCTCCAGTTATATGATAAAGCAGCTATGCTGCCAGTGGAGAGTTA
66 AGTTATTAAAAGAGGTTAGGCCTCCAGTTATATGATAAAGCAGCTATGCTGCCAGTGGAGAGTTA
7786120 TGGTTGGGTGGGTTTGAGTTATTCCCCACATGGTTTGTTGGTAATTATT
131 TGGTTGGGTGGGTTTGAGTTATTCCCCACATGGTTTGTTGGTAATTATT
* *
7786169 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGTTTATGCCCCAGTTATTAAAAGGGATTTTGCCCC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGATTTTGCCCC
7786234 AGTTATTAAAAGAGGTTAGGCCTCCAGTTATATGATAAAGCAGCTATGCTGCCAGTGGAGAGTTA
66 AGTTATTAAAAGAGGTTAGGCCTCCAGTTATATGATAAAGCAGCTATGCTGCCAGTGGAGAGTTA
7786299 TGGTTGGGTGGGTTTGAGTTATTCCCCACATGGTTTGTTGGT
131 TGGTTGGGTGGGTTTGAGTTATTCCCCACATGGTTTGTTGGT
7786341 TTGTACGAGT
Statistics
Matches: 169, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
179 169 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (179 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGATTTTGCCCC
AGTTATTAAAAGAGGTTAGGCCTCCAGTTATATGATAAAGCAGCTATGCTGCCAGTGGAGAGTTA
TGGTTGGGTGGGTTTGAGTTATTCCCCACATGGTTTGTTGGTAATTATT
Found at i:7791508 original size:20 final size:20
Alignment explanation
Indices: 7791483--7791522 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7791473 CGAGGACTCA
7791483 AAAGGATTGGAAGACGATTG
1 AAAGGATTGGAAGACGATTG
7791503 AAAGGATTGGAAGACGATTG
1 AAAGGATTGGAAGACGATTG
7791523 GAGAGTCAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.35, T:0.20
Consensus pattern (20 bp):
AAAGGATTGGAAGACGATTG
Found at i:7791521 original size:11 final size:11
Alignment explanation
Indices: 7791487--7791524 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
7791477 GACTCAAAAG
7791487 GATTGGAAGAC
1 GATTGGAAGAC
*
7791498 GATT-GAA-AG
1 GATTGGAAGAC
7791507 GATTGGAAGAC
1 GATTGGAAGAC
7791518 GATTGGA
1 GATTGGA
7791525 GAGTCAACAC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 5 0.22
10 6 0.26
11 12 0.52
ACGTcount: A:0.37, C:0.05, G:0.37, T:0.21
Consensus pattern (11 bp):
GATTGGAAGAC
Found at i:7795241 original size:46 final size:48
Alignment explanation
Indices: 7795174--7795388 Score: 223
Period size: 46 Copynumber: 4.6 Consensus size: 48
7795164 TAAGTTGCCA
*
7795174 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAAG-TG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGCCG
* *
7795220 ATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-AAGCCG
* * *
7795268 ATG-CATGTCCCAGACGT-ATCTTACACTGGCTTA-CATCTCAAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA-GCCG
* * ** * **
7795314 ATG-CATGTCCCAGACAT-GTCTTACACTAGCAC-TCGCCTCAGTGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCA-AGCCG
7795360 ATGCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
7795389 AGCTTCTCTA
Statistics
Matches: 143, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
45 3 0.02
46 96 0.67
47 30 0.21
48 14 0.10
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGCCG
Found at i:7795377 original size:47 final size:47
Alignment explanation
Indices: 7795309--7795438 Score: 158
Period size: 47 Copynumber: 2.8 Consensus size: 47
7795299 TACATCTCAA
*
7795309 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGCCTCA-GT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTC-CCTAATGT
** * *
7795356 -GTTGATGCCATGTCCCAGACATGGTCTTACACTAGC-TTCTCTAATGT
1 GGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCCCTAATGT
*
7795403 GGCCGATGCATGTCCCATACATGTCTTACACTAGCA
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCA
7795439 AATACAAGTG
Statistics
Matches: 70, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
46 21 0.30
47 31 0.44
48 18 0.26
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (47 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCCCTAATGT
Found at i:7795792 original size:30 final size:30
Alignment explanation
Indices: 7795751--7795809 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
7795741 AAATTCACAT
* * *
7795751 CCTTGGTAAAATGACCATTTTGTCCCTAGA
1 CCTTGGCAAAATAACCATTTTGCCCCTAGA
7795781 CCTTGGCAAAATAACCATTTTGCCCCTAG
1 CCTTGGCAAAATAACCATTTTGCCCCTAG
7795810 GCTCGAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (30 bp):
CCTTGGCAAAATAACCATTTTGCCCCTAGA
Found at i:7798440 original size:27 final size:27
Alignment explanation
Indices: 7798409--7798460 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
7798399 TGTAGCAATT
* *
7798409 CATACAACCCATGTAATAGTAATTTAA
1 CATACAACCCATGTAACAATAATTTAA
**
7798436 CATACAATTCATGTAACAATAATTT
1 CATACAACCCATGTAACAATAATTT
7798461 GCCATTCAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.33
Consensus pattern (27 bp):
CATACAACCCATGTAACAATAATTTAA
Found at i:7812271 original size:19 final size:20
Alignment explanation
Indices: 7812232--7812271 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
7812222 CCATCCCAAT
7812232 CCAACCAACACACCACCTGTA
1 CCAACCAACACACCA-CTGTA
7812253 CCAACCAACACACCA-TGTA
1 CCAACCAACACACCACTGTA
7812272 GGGATAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.21
21 15 0.79
ACGTcount: A:0.40, C:0.45, G:0.05, T:0.10
Consensus pattern (20 bp):
CCAACCAACACACCACTGTA
Found at i:7812474 original size:32 final size:32
Alignment explanation
Indices: 7812423--7812493 Score: 94
Period size: 32 Copynumber: 2.2 Consensus size: 32
7812413 ATAAGCTATA
7812423 AATATGA-TGGCACAAAGCCATCAGTAGCTG-T
1 AATATGATTGGCACAAAGCCATCAGTA-CTGCT
*
7812454 AGTATGATTGGCA-AAGAGCCATCAGTACTGCT
1 AATATGATTGGCACAA-AGCCATCAGTACTGCT
7812486 AATATGAT
1 AATATGAT
7812494 CGACACAGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
31 11 0.31
32 24 0.69
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (32 bp):
AATATGATTGGCACAAAGCCATCAGTACTGCT
Found at i:7812529 original size:22 final size:21
Alignment explanation
Indices: 7812497--7812577 Score: 99
Period size: 22 Copynumber: 3.7 Consensus size: 21
7812487 ATATGATCGA
* *
7812497 CACAGAACCATGATCAAGATGG
1 CACAGAGCCATAATC-AGATGG
7812519 CACAGAGCCATAATCGAGATGG
1 CACAGAGCCATAATC-AGATGG
**
7812541 CACAGAGCCATCTTCAGAATGG
1 CACAGAGCCATAATCAG-ATGG
7812563 CACAGAGCCATAATC
1 CACAGAGCCATAATC
7812578 GGATCAAGTG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
21 2 0.04
22 49 0.96
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.15
Consensus pattern (21 bp):
CACAGAGCCATAATCAGATGG
Found at i:7814552 original size:24 final size:24
Alignment explanation
Indices: 7814507--7814552 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
7814497 CCTAAAATCC
*
7814507 CTCCATGATTTCCTCCCCAATCTT
1 CTCCATGATTTCCTCCACAATCTT
* * *
7814531 CTCCTTGATTTTCTCCATAATC
1 CTCCATGATTTCCTCCACAATC
7814553 CATTCCTTGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.17, C:0.37, G:0.04, T:0.41
Consensus pattern (24 bp):
CTCCATGATTTCCTCCACAATCTT
Found at i:7816492 original size:22 final size:22
Alignment explanation
Indices: 7816438--7816522 Score: 75
Period size: 22 Copynumber: 4.0 Consensus size: 22
7816428 AATATGATCA
* * *
7816438 GCACAGAACCATGATCAAGATG
1 GCACAGAGCCATAATCAGGATG
* *
7816460 GCA-GGAGCCATAATCGGGATG
1 GCACAGAGCCATAATCAGGATG
** * *
7816481 GCACAGAGCCATCTTTAGAATG
1 GCACAGAGCCATAATCAGGATG
7816503 GCACAGAGCCATAATC-GGAT
1 GCACAGAGCCATAATCAGGAT
7816523 CAAGTAGCTT
Statistics
Matches: 47, Mismatches: 15, Indels: 3
0.72 0.23 0.05
Matches are distributed among these distances:
21 19 0.40
22 28 0.60
ACGTcount: A:0.34, C:0.22, G:0.27, T:0.16
Consensus pattern (22 bp):
GCACAGAGCCATAATCAGGATG
Found at i:7816595 original size:43 final size:43
Alignment explanation
Indices: 7816547--7816629 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
7816537 CCGTCGGCAG
* * **
7816547 GTCCACAGTCGTCTCGTGTGACCCGTGTAACCTTAACAGAATA
1 GTCCACAGTCATCTCGTGCGACCCGTACAACCTTAACAGAATA
7816590 GTCCACAGTCATCTCGTGCGACCCGTACAACCTTAACAGA
1 GTCCACAGTCATCTCGTGCGACCCGTACAACCTTAACAGA
7816630 TCAATACTGG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (43 bp):
GTCCACAGTCATCTCGTGCGACCCGTACAACCTTAACAGAATA
Found at i:7817010 original size:27 final size:27
Alignment explanation
Indices: 7816927--7817012 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 27
7816917 TACCCTACAA
* *
7816927 GGGGTATTTCGGTAATTTTAAAAATTA
1 GGGGTATTTCGGTAATTTTACAAATTG
* *
7816954 GAGGTATTTCGATAATTTTACAAATTG
1 GGGGTATTTCGGTAATTTTACAAATTG
* * *
7816981 GGGGTATTTTGGTAATCTTACAAATCG
1 GGGGTATTTCGGTAATTTTACAAATTG
7817008 GGGGT
1 GGGGT
7817013 CTTAACTACC
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.29, C:0.07, G:0.26, T:0.38
Consensus pattern (27 bp):
GGGGTATTTCGGTAATTTTACAAATTG
Found at i:7833035 original size:14 final size:14
Alignment explanation
Indices: 7833016--7833045 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7833006 TTGAAAGTTT
7833016 GTCCTTGGAGGAAA
1 GTCCTTGGAGGAAA
*
7833030 GTCCTTGGAGGCAA
1 GTCCTTGGAGGAAA
7833044 GT
1 GT
7833046 TGAGTCCTCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.17, G:0.37, T:0.23
Consensus pattern (14 bp):
GTCCTTGGAGGAAA
Found at i:7833600 original size:16 final size:17
Alignment explanation
Indices: 7833579--7833613 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7833569 AAAAATTATG
7833579 AAATAAA-AACAAACAA
1 AAATAAACAACAAACAA
*
7833595 AAATAAACATCAAACAA
1 AAATAAACAACAAACAA
7833612 AA
1 AA
7833614 GTCATCCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.77, C:0.14, G:0.00, T:0.09
Consensus pattern (17 bp):
AAATAAACAACAAACAA
Found at i:7836858 original size:69 final size:69
Alignment explanation
Indices: 7836781--7836915 Score: 243
Period size: 69 Copynumber: 2.0 Consensus size: 69
7836771 TATTTTTGTG
* *
7836781 TACTTTTGAGAATAATTTTAGGTGAATTGAGAGAGTATTTTGATAACAAAATTGGTTGGATCTAT
1 TACTTTTGAGAATAATTTCAGGTGAATTGAGAGAGTATTTTGAGAACAAAATTGGTTGGATCTAT
7836846 TGGC
66 TGGC
*
7836850 TACTTTTGAGAATAATTTCAGGTGAATTGAGAGGGTATTTTGAGAACAAAATTGGTTGGATCTAT
1 TACTTTTGAGAATAATTTCAGGTGAATTGAGAGAGTATTTTGAGAACAAAATTGGTTGGATCTAT
7836915 T
66 T
7836916 CTCTAATGAT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 63 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.39
Consensus pattern (69 bp):
TACTTTTGAGAATAATTTCAGGTGAATTGAGAGAGTATTTTGAGAACAAAATTGGTTGGATCTAT
TGGC
Found at i:7836892 original size:34 final size:33
Alignment explanation
Indices: 7836784--7836895 Score: 84
Period size: 34 Copynumber: 3.3 Consensus size: 33
7836774 TTTTGTGTAC
*
7836784 TTTTGAGAATAATTTTAGGTGAATTGAGAGAGTA
1 TTTTGAGAATAA-TTTAGGTGAATTGAGAGGGTA
* * * * ** *
7836818 TTTTGATAACAAAATT-GGTTGGATCT-ATTGGCTA
1 TTTTGAGAA-TAATTTAGG-TGAAT-TGAGAGGGTA
7836852 CTTTTGAGAATAATTTCAGGTGAATTGAGAGGGTA
1 -TTTTGAGAATAATTT-AGGTGAATTGAGAGGGTA
7836887 TTTTGAGAA
1 TTTTGAGAA
7836896 CAAAATTGGT
Statistics
Matches: 56, Mismatches: 15, Indels: 14
0.66 0.18 0.16
Matches are distributed among these distances:
33 2 0.04
34 32 0.57
35 20 0.36
36 2 0.04
ACGTcount: A:0.32, C:0.04, G:0.25, T:0.38
Consensus pattern (33 bp):
TTTTGAGAATAATTTAGGTGAATTGAGAGGGTA
Found at i:7837281 original size:16 final size:16
Alignment explanation
Indices: 7837260--7837290 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7837250 CAACCCAAAT
*
7837260 TAATTATTTTCATTAA
1 TAATTATTTTAATTAA
7837276 TAATTATTTTAATTA
1 TAATTATTTTAATTA
7837291 CTTTAAAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
TAATTATTTTAATTAA
Found at i:7841562 original size:40 final size:40
Alignment explanation
Indices: 7841518--7841598 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
7841508 TATTTGATTG
7841518 AGTAAAACTATGATTATGGTATAATTGTATTATAATTGTA
1 AGTAAAACTATGATTATGGTATAATTGTATTATAATTGTA
*
7841558 AGTAAAATTATGATTATGGTATAATTGTATTATAATTGTA
1 AGTAAAACTATGATTATGGTATAATTGTATTATAATTGTA
7841598 A
1 A
7841599 CATAACTAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.41, C:0.01, G:0.15, T:0.43
Consensus pattern (40 bp):
AGTAAAACTATGATTATGGTATAATTGTATTATAATTGTA
Found at i:7842483 original size:37 final size:37
Alignment explanation
Indices: 7842424--7842532 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
7842414 AGCTCAGACG
* *
7842424 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
7842461 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
7842498 TAATCTCCACACGTAGTCATCGGGTCTTACTCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
7842533 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:7842926 original size:47 final size:47
Alignment explanation
Indices: 7842873--7843066 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
7842863 CATACATATT
* * * *
7842873 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
7842920 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
7842967 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
7843014 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
7843061 TCACAT
1 TCACAT
7843067 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:7842993 original size:22 final size:22
Alignment explanation
Indices: 7842966--7843037 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
7842956 GCTCACATTC
7842966 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
7842988 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
7843012 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
7843035 ATC
1 ATC
7843038 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:7846902 original size:31 final size:31
Alignment explanation
Indices: 7846864--7846923 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
7846854 ATACTTCCAC
7846864 TCGCTAATCCCCCATAGAAGGATTAGTTCGT
1 TCGCTAATCCCCCATAGAAGGATTAGTTCGT
7846895 TCGCTAATCCCCCATAGAAGGATTAGTTC
1 TCGCTAATCCCCCATAGAAGGATTAGTTC
7846924 ATCATGACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (31 bp):
TCGCTAATCCCCCATAGAAGGATTAGTTCGT
Found at i:7851950 original size:16 final size:17
Alignment explanation
Indices: 7851915--7851951 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
7851905 AAAATTTAAT
7851915 AAAATAAAACCTAAGAA
1 AAAATAAAACCTAAGAA
7851932 AAAATAAAACCTAAGAA
1 AAAATAAAACCTAAGAA
7851949 AAA
1 AAA
7851952 GGCTATCATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.73, C:0.11, G:0.05, T:0.11
Consensus pattern (17 bp):
AAAATAAAACCTAAGAA
Found at i:7852940 original size:46 final size:49
Alignment explanation
Indices: 7852801--7853027 Score: 210
Period size: 46 Copynumber: 4.8 Consensus size: 49
7852791 CCACATTATG
*
7852801 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGACG-
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-TGAGATGT
* *
7852849 AGAGCTC-GTGTAAGA-CATGTTTGGGACAT-GCAACGGCCT-TGAGATGT
1 AGAGC-CAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTATGAGATGT
* **
7852896 A-AGCCAGTGTAAGA-CATGTCTGGGACAT-GCGTCGGCTACAAGATGT
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGATGT
* * *
7852942 ---GTCAGTGTAAGACCATGCCTGGGACATGGCATCGGC-ATAGATATGT
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAT-GAGATGT
** *
7852988 GAGAGGTAGTGTAAGACCATGTCTGGGACATGGCGTCGGC
1 -AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
7853028 CTCGATTTCG
Statistics
Matches: 148, Mismatches: 18, Indels: 24
0.78 0.09 0.13
Matches are distributed among these distances:
44 11 0.07
45 17 0.11
46 59 0.40
47 15 0.10
48 13 0.09
49 1 0.01
50 32 0.22
ACGTcount: A:0.26, C:0.19, G:0.33, T:0.22
Consensus pattern (49 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGATGT
Found at i:7856855 original size:26 final size:26
Alignment explanation
Indices: 7856811--7856862 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
7856801 AAGGGTTAAG
*
7856811 AAGCAAGATGTACCAAAAATCGCATT
1 AAGCAAGATGTACCAAAAACCGCATT
**
7856837 AAGCAAGATGTACTGAAAACCGCATT
1 AAGCAAGATGTACCAAAAACCGCATT
7856863 TAGGATGAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.44, C:0.19, G:0.17, T:0.19
Consensus pattern (26 bp):
AAGCAAGATGTACCAAAAACCGCATT
Found at i:7862922 original size:46 final size:46
Alignment explanation
Indices: 7862735--7862959 Score: 176
Period size: 46 Copynumber: 4.8 Consensus size: 46
7862725 TCAGGTTATT
* * * **
7862735 TGTATGCTAGTGTAAGACATGTCTGGGACATGCATCGACCACATTA
1 TGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGA
* * * **
7862781 TG-AGAGCCAGTGTAAGACCATGTTTGGGAAATGGCATCGGC-ATTGAGA
1 TGTA-AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CAAGA
* * * *
7862829 TG-AGAGCTAGTGTAAGACATGTCTAGGACATGTATCAGCCT-CGAGA
1 TGTA-AGCTAGTGTAAGACATGTCTGGGACATGCATC-GGCTACAAGA
7862875 TGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGA
1 TGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGA
* *
7862921 TGT--G-TCAGTGTAAGACCATGCCTAGGACATGGCATCGGC
1 TGTAAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
7862960 ACGGATATGT
Statistics
Matches: 146, Mismatches: 22, Indels: 22
0.77 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 10 0.07
45 16 0.11
46 68 0.47
47 27 0.18
48 24 0.16
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (46 bp):
TGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGA
Found at i:7865388 original size:46 final size:47
Alignment explanation
Indices: 7865209--7865467 Score: 160
Period size: 46 Copynumber: 5.5 Consensus size: 47
7865199 TTTGTATGCT
* * * * **
7865209 AGTGTAAGCCGTGTCTGGGACATGCGTCGGCCACATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGTAGAGCC
** ** *
7865255 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGA-CAAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CAAGATGTAGAGCC
* ** *
7865303 AGTGTAAGACATGACTAAGACATGCATCGGGCT-CGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCTACAAGATGTAGAGCC
* *
7865349 AGTGTAAGACATGTCTGGGACATGCATTGGCTACAAGATGT---GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGTAGAGCC
* * *
7865393 AGTGTAAGACCATG-CATGGGACATGGCATCGGC-ACGGATATGTGAGAGCT
1 AGTGTAAGA-CATGTC-TGGGACAT-GCATCGGCTAC-AAGATGT-AGAGCC
* *
7865443 AGTGGAAGATCATGTCTAGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
7865468 GCGTTGGCCT
Statistics
Matches: 166, Mismatches: 30, Indels: 31
0.73 0.13 0.14
Matches are distributed among these distances:
44 12 0.07
45 18 0.11
46 63 0.38
47 29 0.17
48 22 0.13
49 1 0.01
50 20 0.12
51 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGTAGAGCC
Found at i:7868980 original size:98 final size:100
Alignment explanation
Indices: 7868804--7868997 Score: 268
Period size: 98 Copynumber: 2.0 Consensus size: 100
7868794 TTTGAGATTT
* * *
7868804 TCTTTAATAAATTGTATGTAATTGTTTGGTAATTATTCATAACATCTCATTACTCGGGTCCGGTG
1 TCTTTAATAAATTGTATGCAATTGTTTGGTAATTATTCATAACATCTCATTACTCAGGTCCGATG
***
7868869 ATCGGATTGGGTAA-GGGGT-GTTACATTTATTGA
66 ATCGGACCAGGTAATGGGGTAGTTACATTTATTGA
* * *
7868902 TCTTTAATAAATTGTGTGCAGTTGTTTGGTAATTGTTCATAACATCTCATTACTCAGGTCCGATG
1 TCTTTAATAAATTGTATGCAATTGTTTGGTAATTATTCATAACATCTCATTACTCAGGTCCGATG
*
7868967 A-CTGGACCAGGTAATGGGGTATTTACATTTA
66 ATC-GGACCAGGTAATGGGGTAGTTACATTTA
7868998 GAACATGCAA
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
97 1 0.01
98 68 0.82
99 5 0.06
100 9 0.11
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.40
Consensus pattern (100 bp):
TCTTTAATAAATTGTATGCAATTGTTTGGTAATTATTCATAACATCTCATTACTCAGGTCCGATG
ATCGGACCAGGTAATGGGGTAGTTACATTTATTGA
Found at i:7870407 original size:42 final size:43
Alignment explanation
Indices: 7870342--7870423 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 43
7870332 TCTTCCATGT
* ** *
7870342 AATTCAATATCGATGCCTCTGTCCTAGACAGGGTCTTACACAA
1 AATTAAATATCGATGCCAATGTCCCAGACAGGGTCTTACACAA
*
7870385 AATTAAATAT-GATGCCAATGTCCCAGACATGGTCTTACA
1 AATTAAATATCGATGCCAATGTCCCAGACAGGGTCTTACA
7870424 TGTAAATCTC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
42 25 0.74
43 9 0.26
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (43 bp):
AATTAAATATCGATGCCAATGTCCCAGACAGGGTCTTACACAA
Found at i:7870785 original size:69 final size:69
Alignment explanation
Indices: 7870706--7870837 Score: 255
Period size: 69 Copynumber: 1.9 Consensus size: 69
7870696 TTTCCCCGAT
7870706 CTAAGTCTGATTTTCTTTGTTCTTGATCTAATAAAATTCAAATTCAACCATTCAATCATTCATCC
1 CTAAGTCTGATTTTCTTTGTTCTTGATCTAATAAAATTCAAATTCAACCATTCAATCATTCATCC
7870771 CGGG
66 CGGG
*
7870775 CTAAGTCTGATTTTCTTTGTTCTTGATCTAATAAAATTCAAATTCAACCATTCAATTATTCAT
1 CTAAGTCTGATTTTCTTTGTTCTTGATCTAATAAAATTCAAATTCAACCATTCAATCATTCAT
7870838 TTCATTCAAA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (69 bp):
CTAAGTCTGATTTTCTTTGTTCTTGATCTAATAAAATTCAAATTCAACCATTCAATCATTCATCC
CGGG
Found at i:7884007 original size:289 final size:289
Alignment explanation
Indices: 7883488--7884066 Score: 1140
Period size: 289 Copynumber: 2.0 Consensus size: 289
7883478 GAGTTTGATT
7883488 CATGATTCCGTACATATGTGACTTTAATGTCTAATGAATATATGTGGGCCAAGTACCTTGAGTTC
1 CATGATTCCGTACATATGTGACTTTAATGTCTAATGAATATATGTGGGCCAAGTACCTTGAGTTC
7883553 CTCTTTTCGATGCTCAAATGATTAAATCAATTTATTTGTTAAATTAAGCTCAAGAGCAAAAGGGA
66 CTCTTTTCGATGCTCAAATGATTAAATCAATTTATTTGTTAAATTAAGCTCAAGAGCAAAAGGGA
7883618 ACTAAATCCGATAAAGGGAAGGAAAAAGTGGTCGAATAGCCATCGGAATCGTTCGACAACATCCG
131 ACTAAATCCGATAAAGGGAAGGAAAAAGTGGTCGAATAGCCATCGGAATCGTTCGACAACATCCG
7883683 AGGTAAGTTTTCGAGTAATGGGACTTAAATTATGATTCGATTAGATTATGTCTTAAGTAAATCAA
196 AGGTAAGTTTTCGAGTAATGGGACTTAAATTATGATTCGATTAGATTATGTCTTAAGTAAATCAA
*
7883748 AATCATGCTCTTATATGTGGCTATTTAGC
261 AATCATGCTCTTATATGTGGCTATTGAGC
7883777 CATGATTCCGTACATATGTGACTTTAATGTCTAATGAATATATGTGGGCCAAGTACCTTGAGTTC
1 CATGATTCCGTACATATGTGACTTTAATGTCTAATGAATATATGTGGGCCAAGTACCTTGAGTTC
7883842 CTCTTTTCGATGCTCAAATGATTAAATCAATTTATTTGTTAAATTAAGCTCAAGAGCAAAAGGGA
66 CTCTTTTCGATGCTCAAATGATTAAATCAATTTATTTGTTAAATTAAGCTCAAGAGCAAAAGGGA
7883907 ACTAAATCCGATAAAGGGAAGGAAAAAGTGGTCGAATAGCCATCGGAATCGTTCGACAACATCCG
131 ACTAAATCCGATAAAGGGAAGGAAAAAGTGGTCGAATAGCCATCGGAATCGTTCGACAACATCCG
7883972 AGGTAAGTTTTCGAGTAATGGGACTTAAATTATGATTCGATTAGATTATGTCTTAAGTAAATCAA
196 AGGTAAGTTTTCGAGTAATGGGACTTAAATTATGATTCGATTAGATTATGTCTTAAGTAAATCAA
*
7884037 AATCATGCTCTTGTATGTGGCTATTGAGC
261 AATCATGCTCTTATATGTGGCTATTGAGC
7884066 C
1 C
7884067 GAAATTGTAA
Statistics
Matches: 288, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
289 288 1.00
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (289 bp):
CATGATTCCGTACATATGTGACTTTAATGTCTAATGAATATATGTGGGCCAAGTACCTTGAGTTC
CTCTTTTCGATGCTCAAATGATTAAATCAATTTATTTGTTAAATTAAGCTCAAGAGCAAAAGGGA
ACTAAATCCGATAAAGGGAAGGAAAAAGTGGTCGAATAGCCATCGGAATCGTTCGACAACATCCG
AGGTAAGTTTTCGAGTAATGGGACTTAAATTATGATTCGATTAGATTATGTCTTAAGTAAATCAA
AATCATGCTCTTATATGTGGCTATTGAGC
Found at i:7884264 original size:40 final size:40
Alignment explanation
Indices: 7884170--7884314 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
7884160 TACTCGAATG
* *
7884170 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
7884211 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
7884251 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
7884291 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
7884315 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:7910997 original size:28 final size:27
Alignment explanation
Indices: 7910933--7911057 Score: 187
Period size: 28 Copynumber: 4.6 Consensus size: 27
7910923 TTATTAAGTC
* *
7910933 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
7910960 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
7910988 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
7911016 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
7911043 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7911058 GCACAATTTA
Statistics
Matches: 91, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
27 40 0.44
28 50 0.55
29 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:7911046 original size:55 final size:55
Alignment explanation
Indices: 7910933--7911057 Score: 189
Period size: 55 Copynumber: 2.3 Consensus size: 55
7910923 TTATTAAGTC
* *
7910933 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCATACT
* * *
7910988 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATATTCA-ATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCTACATAATCATACT
7911043 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7911058 GCACAATTTA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
55 37 0.58
56 27 0.42
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCATACT
Found at i:7911076 original size:56 final size:56
Alignment explanation
Indices: 7910933--7911082 Score: 180
Period size: 56 Copynumber: 2.7 Consensus size: 56
7910923 TTATTAAGTC
* * * *
7910933 CGCACACTCAGTGCTATATAATC-AACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCTACATAATCATACT
* * *
7910988 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATATTCA-ATT
1 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCTACATAATCATACT
* *
7911043 CGCACACTTAGTGCTGCACA-ATTTAAACCCGCACACTTAG
1 CGCACACTTAGTGCT--ACATAGTCAAACCCGCACACTTAG
7911083 CGCCAATCTC
Statistics
Matches: 84, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
55 37 0.44
56 44 0.52
57 3 0.04
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (56 bp):
CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCTACATAATCATACT
Found at i:7920790 original size:40 final size:40
Alignment explanation
Indices: 7920745--7920835 Score: 103
Period size: 40 Copynumber: 2.3 Consensus size: 40
7920735 AGCTATGTTG
* *
7920745 GCACTTGGTGTACG-TTTCGAGATAGCTTCGGCTATATATA
1 GCACTTAGTGTACGAATTCGA-ATAGCTTCGGCTATATATA
* * * *
7920785 GCACTTAGTGTGCGAATTGGAATAGCTTCGGCTATATGTG
1 GCACTTAGTGTACGAATTCGAATAGCTTCGGCTATATATA
*
7920825 GCACTGAGTGT
1 GCACTTAGTGT
7920836 GCGATATTGA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 39 0.91
41 4 0.09
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (40 bp):
GCACTTAGTGTACGAATTCGAATAGCTTCGGCTATATATA
Found at i:7920836 original size:40 final size:41
Alignment explanation
Indices: 7920766--7920844 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 41
7920756 ACGTTTCGAG
*
7920766 ATAGCTTCGGCTATATATAGCACTTAGTGTGCGA-ATTGGA
1 ATAGCTTCGGCTATATATAGCACTGAGTGTGCGATATTGGA
* *
7920806 ATAGCTTCGGCTATATGTGGCACTGAGTGTGCGATATTG
1 ATAGCTTCGGCTATATATAGCACTGAGTGTGCGATATTG
7920845 AGATAGTTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
40 31 0.89
41 4 0.11
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (41 bp):
ATAGCTTCGGCTATATATAGCACTGAGTGTGCGATATTGGA
Found at i:7921843 original size:30 final size:30
Alignment explanation
Indices: 7921809--7921867 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
7921799 GGGCAGAGAC
*
7921809 ACGGGAGTGTGTCTCAGCCGTGTATGACAT
1 ACGGGAGTGTGTCTCAACCGTGTATGACAT
7921839 ACGGGAGTGTGTCTCAACCGTGTATGACA
1 ACGGGAGTGTGTCTCAACCGTGTATGACA
7921868 CACGTTAATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.25
Consensus pattern (30 bp):
ACGGGAGTGTGTCTCAACCGTGTATGACAT
Found at i:7923195 original size:36 final size:36
Alignment explanation
Indices: 7923148--7923221 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
7923138 CACTGAGTAC
7923148 GAAAGAGAATTCTTACGATTAAACAAATACGCTCGG
1 GAAAGAGAATTCTTACGATTAAACAAATACGCTCGG
*
7923184 GAAAGAGAATTCTTACGATTAAACAAATATGCTCGG
1 GAAAGAGAATTCTTACGATTAAACAAATACGCTCGG
7923220 GA
1 GA
7923222 GTATGTATCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.23
Consensus pattern (36 bp):
GAAAGAGAATTCTTACGATTAAACAAATACGCTCGG
Found at i:7929474 original size:15 final size:14
Alignment explanation
Indices: 7929441--7929475 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
7929431 AATCAATCGA
7929441 TTTTTCCCAAAATT
1 TTTTTCCCAAAATT
*
7929455 ATTTTCCCAAAAATT
1 TTTTTCCC-AAAATT
7929470 TTTTTC
1 TTTTTC
7929476 TGTGCATTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.29, C:0.20, G:0.00, T:0.51
Consensus pattern (14 bp):
TTTTTCCCAAAATT
Found at i:7943988 original size:55 final size:55
Alignment explanation
Indices: 7943872--7943989 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 55
7943862 TGTGATATGG
* * * * *
7943872 CCGTGGTCGAGCCTACCAAAACAACACGGGCGTGCAACATGCCCATGTGGAAGAA
1 CCGTGGTCGAGCCTACCAAAACAACACAGGCATGCAACACGCCCATGTGAAACAA
* * * * *
7943927 CTGTGGTCGAGCCTACCAAAACAACACAGGCATTCGACACGCCCGTGTGAAACAC
1 CCGTGGTCGAGCCTACCAAAACAACACAGGCATGCAACACGCCCATGTGAAACAA
7943982 CCGTGGTC
1 CCGTGGTC
7943990 TAACCTATTA
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.29, C:0.31, G:0.25, T:0.14
Consensus pattern (55 bp):
CCGTGGTCGAGCCTACCAAAACAACACAGGCATGCAACACGCCCATGTGAAACAA
Found at i:7949514 original size:9 final size:9
Alignment explanation
Indices: 7949500--7949524 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7949490 TATCTCTTAA
7949500 CATATGACT
1 CATATGACT
7949509 CATATGACT
1 CATATGACT
7949518 CATATGA
1 CATATGA
7949525 TCGTTTCGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.32
Consensus pattern (9 bp):
CATATGACT
Found at i:7950444 original size:40 final size:40
Alignment explanation
Indices: 7950361--7950496 Score: 168
Period size: 40 Copynumber: 3.4 Consensus size: 40
7950351 AAGCCAAGTA
* * * * * *
7950361 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTCGAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
7950400 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
7950440 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
7950480 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
7950497 NNNNNNNNNN
Statistics
Matches: 84, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 12 0.14
40 72 0.86
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:7959804 original size:40 final size:40
Alignment explanation
Indices: 7959743--7959886 Score: 218
Period size: 40 Copynumber: 3.6 Consensus size: 40
7959733 NNNACTCACT
* *
7959743 CAAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
7959783 CAAATGCCTTCGGGACCTAGCCCGGAAATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
7959823 CAAATGCCTTCGGGACTTAGCCCGAAT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
7959862 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
7959887 TTATCATCCG
Statistics
Matches: 94, Mismatches: 10, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 34 0.36
40 60 0.64
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:7967282 original size:37 final size:37
Alignment explanation
Indices: 7967241--7967315 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
7967231 TAATCATAAG
7967241 ATAGGGAGAGAGGTGAAACTTCCTGAATGATGAATGA
1 ATAGGGAGAGAGGTGAAACTTCCTGAATGATGAATGA
7967278 ATAGGGAGAGAGGTGAAACTTCCTGAATGATGAATGA
1 ATAGGGAGAGAGGTGAAACTTCCTGAATGATGAATGA
7967315 A
1 A
7967316 CTCCTTGAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.39, C:0.08, G:0.32, T:0.21
Consensus pattern (37 bp):
ATAGGGAGAGAGGTGAAACTTCCTGAATGATGAATGA
Found at i:7969944 original size:17 final size:18
Alignment explanation
Indices: 7969901--7969944 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
7969891 AATTAGCTTG
*
7969901 TCATGGTGTGGTTTTGGT
1 TCATAGTGTGGTTTTGGT
* *
7969919 TTATAGTGTGTTTTTGGT
1 TCATAGTGTGGTTTTGGT
7969937 TCAT-GTGT
1 TCATAGTGT
7969945 CCGCCATTCA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.09, C:0.05, G:0.32, T:0.55
Consensus pattern (18 bp):
TCATAGTGTGGTTTTGGT
Found at i:7980601 original size:28 final size:28
Alignment explanation
Indices: 7980570--7980640 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 28
7980560 ACCGATCACA
*
7980570 CACACATAGTGCTCAGTTGAAGAA-CTCG
1 CACACATAGTGCTCAATT-AAGAATCTCG
* **
7980598 CACACACAGTGCCTCAATTACTAATCTCG
1 CACACATAGTG-CTCAATTAAGAATCTCG
*
7980627 TACACATAGTGCTC
1 CACACATAGTGCTC
7980641 GGTTAAAGGA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
28 16 0.46
29 19 0.54
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (28 bp):
CACACATAGTGCTCAATTAAGAATCTCG
Found at i:7981046 original size:43 final size:43
Alignment explanation
Indices: 7980824--7981045 Score: 327
Period size: 43 Copynumber: 5.2 Consensus size: 43
7980814 CCTTGCTCGA
** * *
7980824 ATCACCGGCATTAAGCCTACTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
7980867 ATCACTGGCACGAAGCCTGCTAGGCACGAAGGCCTGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
7980910 ATCACCGGCATGAAGCCTGCTAGGTACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
7980953 ATCACTGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * * *
7980996 ATCACCGACACAAAGCCCGCTAGGCACGAAGGCTCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
7981039 ATCACCG
1 ATCACCG
7981046 AGTTTCATGC
Statistics
Matches: 161, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 161 1.00
ACGTcount: A:0.32, C:0.32, G:0.23, T:0.13
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:7981300 original size:43 final size:43
Alignment explanation
Indices: 7981252--7981366 Score: 158
Period size: 43 Copynumber: 2.7 Consensus size: 43
7981242 GCATTATGCA
* * * *
7981252 AGGCATTAAGACCCGAATACACATCACTGGCACGAAGCCTACT
1 AGGCATAAAGGCCCGAATACACATCACCGGCACAAAGCCTACT
* * *
7981295 AGGCATGAAGGCCCTAATACACATCACCGGCACAAAGCCTGCT
1 AGGCATAAAGGCCCGAATACACATCACCGGCACAAAGCCTACT
*
7981338 AGGCACAAAGGCCCGAATACACATCACCG
1 AGGCATAAAGGCCCGAATACACATCACCG
7981367 AGTTTCATGC
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.35, C:0.32, G:0.20, T:0.13
Consensus pattern (43 bp):
AGGCATAAAGGCCCGAATACACATCACCGGCACAAAGCCTACT
Found at i:7984684 original size:43 final size:43
Alignment explanation
Indices: 7984553--7984685 Score: 203
Period size: 43 Copynumber: 3.1 Consensus size: 43
7984543 TATATGTGAT
*
7984553 ATTGATATGTAATTATGTGTAAGACCATGTCTGGGACATTGGC
1 ATTGATATGTAATTATGTGTAAGACCAAGTCTGGGACATTGGC
** *
7984596 ATCAATATGTAATTATGTGTAAGACCAAGTCTGGGACCTTGGC
1 ATTGATATGTAATTATGTGTAAGACCAAGTCTGGGACATTGGC
* * *
7984639 ATTGATATGTAATAATGTGTAAGACCACGTCTGGGACGTTGGC
1 ATTGATATGTAATTATGTGTAAGACCAAGTCTGGGACATTGGC
7984682 ATTG
1 ATTG
7984686 TACGATATGT
Statistics
Matches: 81, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 81 1.00
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.32
Consensus pattern (43 bp):
ATTGATATGTAATTATGTGTAAGACCAAGTCTGGGACATTGGC
Found at i:7986909 original size:22 final size:21
Alignment explanation
Indices: 7986861--7986960 Score: 74
Period size: 24 Copynumber: 4.4 Consensus size: 21
7986851 ATAGCTCGTA
* * *
7986861 AGAGCTTTTTGTTCATCTCATT
1 AGAGCTTATT-TTCAACTCAAT
*
7986883 GGAGCTTATTGTTCAACTCAAT
1 AGAGCTTATT-TTCAACTCAAT
*
7986905 AGAGCGTACCATTTTCAACTCAAT
1 AGAGC-T--TATTTTCAACTCAAT
*
7986929 AGAGCTTACCGTTTTCAGCTCAAT
1 AGAGCTTA---TTTTCAACTCAAT
7986953 AGAGCTTA
1 AGAGCTTA
7986961 CTATTTATCA
Statistics
Matches: 64, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
21 1 0.02
22 22 0.34
23 2 0.03
24 36 0.56
25 3 0.05
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (21 bp):
AGAGCTTATTTTCAACTCAAT
Found at i:7986924 original size:24 final size:24
Alignment explanation
Indices: 7986894--7986975 Score: 110
Period size: 24 Copynumber: 3.4 Consensus size: 24
7986884 GAGCTTATTG
*
7986894 TTCAACTCAATAGAGCGTACCATT
1 TTCAACTCAATAGAGCTTACCATT
*
7986918 TTCAACTCAATAGAGCTTACCGTT
1 TTCAACTCAATAGAGCTTACCATT
* *
7986942 TTCAGCTCAATAGAGCTTACTATT
1 TTCAACTCAATAGAGCTTACCATT
*
7986966 TATCAGCTCA
1 T-TCAACTCA
7986976 TGAAGAGCTT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
24 44 0.85
25 8 0.15
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.33
Consensus pattern (24 bp):
TTCAACTCAATAGAGCTTACCATT
Found at i:7986986 original size:26 final size:24
Alignment explanation
Indices: 7986889--7986989 Score: 105
Period size: 24 Copynumber: 4.1 Consensus size: 24
7986879 CATTGGAGCT
* *
7986889 TATTGTTCAACTCAATAGAGCGTAC
1 TATT-TTCAGCTCAATAGAGCTTAC
* *
7986914 CATTTTCAACTCAATAGAGCTTAC
1 TATTTTCAGCTCAATAGAGCTTAC
**
7986938 CGTTTTCAGCTCAATAGAGCTTAC
1 TATTTTCAGCTCAATAGAGCTTAC
7986962 TATTTATCAGCTC-ATGAAGAGCTTAC
1 TATTT-TCAGCTCAAT--AGAGCTTAC
7986988 TA
1 TA
7986990 CCATGTCTCG
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
24 46 0.69
25 10 0.15
26 11 0.16
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.34
Consensus pattern (24 bp):
TATTTTCAGCTCAATAGAGCTTAC
Found at i:7990918 original size:42 final size:43
Alignment explanation
Indices: 7990838--7990941 Score: 113
Period size: 42 Copynumber: 2.4 Consensus size: 43
7990828 CATGGACTTA
7990838 TGATTTACGTGTAAGACCATATATGGGACATCGACATCG-TATT
1 TGATTT-CGTGTAAGACCATATATGGGACATCGACATCGATATT
* * * *
7990881 TGATTTCGTGTAAGACCCTATCTGGGATAGT-GGCATCGATATT
1 TGATTTCGTGTAAGACCATATATGGGACA-TCGACATCGATATT
* * *
7990924 TAATTACATGTAAGACCA
1 TGATTTCGTGTAAGACCA
7990942 CGTCTGGGAC
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 26 0.51
43 25 0.49
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (43 bp):
TGATTTCGTGTAAGACCATATATGGGACATCGACATCGATATT
Found at i:7990958 original size:43 final size:43
Alignment explanation
Indices: 7990801--7990959 Score: 119
Period size: 43 Copynumber: 3.7 Consensus size: 43
7990791 TATGTGTTTT
* * * *
7990801 CATGTAAGACCACGTCTGGGACGTTGGCATGGACT-TATGATTTA
1 CATGTAAGACCACATCTGGGACGTTGGCATCGA-TAT-TTAATTA
* * * * * * * *
7990845 CGTGTAAGACCATATATGGGACATCGACATCG-TATTTGATTT
1 CATGTAAGACCACATCTGGGACGTTGGCATCGATATTTAATTA
* *
7990887 CGTGTAAGACC-CTATCTGGGATAG-TGGCATCGATATTTAATTA
1 CATGTAAGACCAC-ATCTGGGA-CGTTGGCATCGATATTTAATTA
*
7990930 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CATGTAAGACCACATCTGGGACGTTGGCAT
7990960 TGTACGAGCT
Statistics
Matches: 86, Mismatches: 23, Indels: 13
0.70 0.19 0.11
Matches are distributed among these distances:
42 29 0.34
43 32 0.37
44 25 0.29
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (43 bp):
CATGTAAGACCACATCTGGGACGTTGGCATCGATATTTAATTA
Found at i:7998888 original size:26 final size:25
Alignment explanation
Indices: 7998857--7998962 Score: 82
Period size: 24 Copynumber: 4.4 Consensus size: 25
7998847 GACATGGTTG
*
7998857 GTAAGCTCTTCA-TGAGTTGATAAACA
1 GTAAGCTCTT-ATTGAGCTGA-AAACA
*
7998883 GTAAGCTC-TATTGAGCTGAAAACG
1 GTAAGCTCTTATTGAGCTGAAAACA
*
7998907 GTAAGCTC-TATTGAGATG--AACA
1 GTAAGCTCTTATTGAGCTGAAAACA
* * * *
7998929 GTAACCTC-CAATGAGCT-AAAATA
1 GTAAGCTCTTATTGAGCTGAAAACA
7998952 GTAAGCTCTTA
1 GTAAGCTCTTA
7998963 CGAGCTATCG
Statistics
Matches: 65, Mismatches: 11, Indels: 10
0.76 0.13 0.12
Matches are distributed among these distances:
22 16 0.25
23 10 0.15
24 23 0.35
25 8 0.12
26 8 0.12
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (25 bp):
GTAAGCTCTTATTGAGCTGAAAACA
Found at i:8006425 original size:24 final size:24
Alignment explanation
Indices: 8006383--8006464 Score: 112
Period size: 24 Copynumber: 3.4 Consensus size: 24
8006373 AAGCTCTTCA
8006383 TGAGCTGATAAAC-AGTAAGCTCTAT
1 TGAGCTGA-AAACGA-TAAGCTCTAT
*
8006408 TGAGTTGAAAACGATAAGCTCTAT
1 TGAGCTGAAAACGATAAGCTCTAT
* *
8006432 TGAGCTGAAAACGGTGAGCTCTAT
1 TGAGCTGAAAACGATAAGCTCTAT
8006456 TGAGCTGAA
1 TGAGCTGAA
8006465 CAAGAACCTC
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
24 44 0.85
25 8 0.15
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (24 bp):
TGAGCTGAAAACGATAAGCTCTAT
Found at i:8007587 original size:27 final size:27
Alignment explanation
Indices: 8007557--8007651 Score: 122
Period size: 27 Copynumber: 3.5 Consensus size: 27
8007547 TATAGGCTAG
*
8007557 ATTACTGAAATACCCTTGTAGAGTAGA
1 ATTACTGAAATACCCCTGTAGAGTAGA
* *
8007584 ATTACTGAAATGCCCCTATAG-GATAGA
1 ATTACTGAAATACCCCTGTAGAG-TAGA
*
8007611 ATTACTGAAATTCCCCTGTA-AGGTAGA
1 ATTACTGAAATACCCCTGTAGA-GTAGA
8007638 ATTACTGAAATACC
1 ATTACTGAAATACC
8007652 ATTGGTTTAC
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
26 1 0.02
27 57 0.97
28 1 0.02
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (27 bp):
ATTACTGAAATACCCCTGTAGAGTAGA
Found at i:8007617 original size:54 final size:53
Alignment explanation
Indices: 8007546--8007648 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 53
8007536 AATCTCATAT
* *
8007546 CTATAGGCTAGATTACTGAAATACCCTTGT-AGAGTAGAATTACTGAAATGCCC
1 CTATAGGATAGATTACTGAAATACCCCTGTAAG-GTAGAATTACTGAAATGCCC
*
8007599 CTATAGGATAGAATTACTGAAATTCCCCTGTAAGGTAGAATTACTGAAAT
1 CTATAGGATAG-ATTACTGAAATACCCCTGTAAGGTAGAATTACTGAAAT
8007649 ACCATTGGTT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
53 10 0.22
54 33 0.73
55 2 0.04
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (53 bp):
CTATAGGATAGATTACTGAAATACCCCTGTAAGGTAGAATTACTGAAATGCCC
Found at i:8007682 original size:26 final size:27
Alignment explanation
Indices: 8007637--8007704 Score: 102
Period size: 26 Copynumber: 2.6 Consensus size: 27
8007627 TGTAAGGTAG
8007637 AATTACTGAAATACCATTGGTTTACAA
1 AATTACTGAAATACCATTGGTTTACAA
*
8007664 AATTACTG-AATACCCTTGGTTTACAA
1 AATTACTGAAATACCATTGGTTTACAA
**
8007690 AATTACCAAAATACC
1 AATTACTGAAATACC
8007705 CTCAATTAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 23 0.62
27 14 0.38
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACTGAAATACCATTGGTTTACAA
Found at i:8007718 original size:27 final size:27
Alignment explanation
Indices: 8007688--8007839 Score: 112
Period size: 27 Copynumber: 5.6 Consensus size: 27
8007678 CTTGGTTTAC
* *
8007688 AAAATTACCAAAATACCCTCAATTAGAA
1 AAAATTACCAAAATACCCTCAATTTG-T
* *
8007716 AAAAATACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTC-AATTTGT
* * *
8007743 GAAATTACCTAAATACCCTCAATTTCT
1 AAAATTACCAAAATACCCTCAATTTGT
* *
8007770 AAAATTACTAAAATACCC-CTAATTTGG
1 AAAATTACCAAAATACCCTC-AATTTGT
* * * ** *
8007797 AAAATTATCGAAATAACCTTGATTTGG
1 AAAATTACCAAAATACCCTCAATTTGT
8007824 AAAATT-CCAGAAATAC
1 AAAATTACCA-AAATAC
8007840 TCTTGATTTA
Statistics
Matches: 96, Mismatches: 23, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
26 2 0.02
27 72 0.75
28 22 0.23
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCAATTTGT
Found at i:8007811 original size:54 final size:56
Alignment explanation
Indices: 8007688--8007803 Score: 148
Period size: 54 Copynumber: 2.1 Consensus size: 56
8007678 CTTGGTTTAC
*
8007688 AAAATTACCAAAATACCCTCAATTAGAAAAAAATACCAAAATACCCCTAGTTTGTG
1 AAAATTACCAAAATACCCTCAATTAGAAAAAAATACCAAAATACCCCTAATTTGTG
* *** * *
8007744 -AAATTACCTAAATACCCTCAATT-TCTAAAATTACTAAAATACCCCTAATTTG-G
1 AAAATTACCAAAATACCCTCAATTAGAAAAAAATACCAAAATACCCCTAATTTGTG
8007797 AAAATTA
1 AAAATTA
8007804 TCGAAATAAC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
53 1 0.02
54 29 0.56
55 22 0.42
ACGTcount: A:0.47, C:0.21, G:0.05, T:0.28
Consensus pattern (56 bp):
AAAATTACCAAAATACCCTCAATTAGAAAAAAATACCAAAATACCCCTAATTTGTG
Done.