Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 220 of 297
Found at i:74707880 original size:27 final size:27
Alignment explanation
Indices: 74707792--74707963 Score: 213
Period size: 27 Copynumber: 6.4 Consensus size: 27
74707782 GGGGCAAAAT
* * *
74707792 GGTAATTTTACTCC-ACAAGGATATCTC
1 GGTAATTCTAC-CCTACAAGGGTATTTC
*
74707819 GGTAATTCTACCCTACAGGGGT-TTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
74707845 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
74707872 GGTAATTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
74707899 GGTAATTCTACCCTACAGGGGTACTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
74707926 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
74707953 GGTAATTCTAC
1 GGTAATTCTAC
74707964 AACTTATCTA
Statistics
Matches: 125, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 24 0.19
27 101 0.81
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:74707907 original size:80 final size:81
Alignment explanation
Indices: 74707792--74707963 Score: 258
Period size: 80 Copynumber: 2.1 Consensus size: 81
74707782 GGGGCAAAAT
* * * *
74707792 GGTAATTTTACTCCACAAGGATATCTCGGTAATTCTACCCTACAGGGGT-TTTCAGTATTTCTAC
1 GGTAATTCTACTCCACAAGGATATCTCGGTAATTCTACCCTACAGGGGTACTTCAATAATTCTAC
74707856 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* *
74707872 GGTAATTCTA-TCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTACTTCAATAATTCTA
1 GGTAATTCTACTCC-ACAAGGATATCTCGGTAATTCTACCCTACAGGGGTACTTCAATAATTCTA
*
74707936 CCCTACAGGGGTATTTC
65 CCCTACAAGGGTATTTC
74707953 GGTAATTCTAC
1 GGTAATTCTAC
74707964 AACTTATCTA
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 3 0.04
80 42 0.51
81 37 0.45
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (81 bp):
GGTAATTCTACTCCACAAGGATATCTCGGTAATTCTACCCTACAGGGGTACTTCAATAATTCTAC
CCTACAAGGGTATTTC
Found at i:74713368 original size:12 final size:12
Alignment explanation
Indices: 74713331--74713359 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
74713321 AGCATTACCT
74713331 CGGCCACGTCCA
1 CGGCCACGTCCA
74713343 CGGCCACGTCCA
1 CGGCCACGTCCA
74713355 CGGCC
1 CGGCC
74713360 TCTTCCACGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.14, C:0.52, G:0.28, T:0.07
Consensus pattern (12 bp):
CGGCCACGTCCA
Found at i:74715434 original size:27 final size:27
Alignment explanation
Indices: 74715404--74715576 Score: 202
Period size: 27 Copynumber: 6.4 Consensus size: 27
74715394 GAGGTAAAAT
* * *
74715404 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
74715431 GGTAATTCTACCCTACAAGGTTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
74715458 GATAGTTCTACCCTACGAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
74715485 GATAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
74715512 AGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
74715539 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
74715566 GGTAATTCTAC
1 GGTAATTCTAC
74715577 AACTTATCCA
Statistics
Matches: 128, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:74721802 original size:43 final size:43
Alignment explanation
Indices: 74721755--74721839 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
74721745 AGTTTTACAT
*
74721755 GTAATCACATATTGATGCCACTGACCCAGACAGGGTCTTACTC
1 GTAATCACATATCGATGCCACTGACCCAGACAGGGTCTTACTC
* *
74721798 GTAATCACATATCGATGCCGCTGTCCCAGACAGGGTCTTACT
1 GTAATCACATATCGATGCCACTGACCCAGACAGGGTCTTACT
74721840 TGCACACATA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (43 bp):
GTAATCACATATCGATGCCACTGACCCAGACAGGGTCTTACTC
Found at i:74721853 original size:43 final size:43
Alignment explanation
Indices: 74721760--74721854 Score: 115
Period size: 43 Copynumber: 2.3 Consensus size: 43
74721750 TACATGTAAT
*
74721760 CACATAT-T-GATGCCACTGACCCAGACAGGGTCTTACTCGTA
1 CACATATATCGATGCCACTGACCCAGACAGGGTCTTACTCGCA
* * * *
74721801 -ATCACATATCGATGCCGCTGTCCCAGACAGGGTCTTACTTGCA
1 CA-CATATATCGATGCCACTGACCCAGACAGGGTCTTACTCGCA
74721844 CACATATATCG
1 CACATATATCG
74721855 GAATCACATA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
40 1 0.02
41 4 0.09
42 1 0.02
43 37 0.84
44 1 0.02
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (43 bp):
CACATATATCGATGCCACTGACCCAGACAGGGTCTTACTCGCA
Found at i:74721891 original size:56 final size:56
Alignment explanation
Indices: 74721831--74721968 Score: 195
Period size: 56 Copynumber: 2.5 Consensus size: 56
74721821 TCCCAGACAG
* * * * *
74721831 GGTCTTACTTGCACACATATATCGGAATCACATATCGATGTCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGAAACCACATATCGATGCCAACGTATTAAACAT
** * *
74721887 GGTCTTACTCATACACATATATTGAAACCATATATCGATGCCAACGTATTAAACAT
1 GGTCTTACTCGCACACATATATCGAAACCACATATCGATGCCAACGTATTAAACAT
74721943 GGTCTTACTCGCACACATATATCGAA
1 GGTCTTACTCGCACACATATATCGAA
74721969 GCCATGGTCT
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 70 1.00
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAACCACATATCGATGCCAACGTATTAAACAT
Found at i:74722589 original size:15 final size:15
Alignment explanation
Indices: 74722566--74722595 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
74722556 TCAAAAATTC
74722566 CAATACAAAACATAT
1 CAATACAAAACATAT
*
74722581 CAATCCAAAACATAT
1 CAATACAAAACATAT
74722596 ATTTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.23, G:0.00, T:0.20
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:74723433 original size:49 final size:49
Alignment explanation
Indices: 74723275--74723682 Score: 170
Period size: 48 Copynumber: 8.5 Consensus size: 49
74723265 NNNACACGAC
* ** *
74723275 GCCATGTCCCAGACATGGTCTTACACTAGCTAGCACATCA-A-A-GTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATAT-ATAGAGGTCGAT
* * *
74723323 GCCATGTCCCAGACAGGTCTTACATTGAGTGGCTTTTATATATAGAGGTCGAT
1 GCCATGTCCCAGACAGGTCTTAC----ACTGGCTCTCATATATAGAGGTCGAT
** * * *
74723376 GCTGTGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCG-GTGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATAGAG-GTCGAT
** * * * * *
74723425 GCCATGTCCCAGACAGGTCTTACACT--AACACACA-ACA-AGCT-GAC
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATAGAGGTCGAT
* * * * * * *
74723469 GCCATGTCCCAGACAGGTTTTACACTAGCT-TGTATATCTCGAGGCCAAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCT-CATATATAGAGGTCGAT
* * * * * * * * *
74723518 G-CATGTCCTAGACATGTCTTACACTAGTTCTCGTCT-CA-ATGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATAGAGGTCGAT
* * * * * * *
74723564 G-CATGTCCCAGGCATGTCTTACACCGGCT-TGTATATCTCGAGGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCT-CATATATAGAGGTCGAT
* * * *
74723612 G-CATGTCCCAGACATGTCTTACATTGGCTCTCATA-AT-GTGGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATAGAGGTCGAT
* *
74723658 G-CATGTTCCAGACATGTCTTACACT
1 GCCATGTCCCAGACAGGTCTTACACT
74723683 AGCACACATA
Statistics
Matches: 271, Mismatches: 69, Indels: 42
0.71 0.18 0.11
Matches are distributed among these distances:
44 27 0.10
45 2 0.01
46 67 0.25
47 12 0.04
48 80 0.30
49 46 0.17
50 1 0.00
51 9 0.03
52 1 0.00
53 26 0.10
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (49 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATAGAGGTCGAT
Found at i:74723531 original size:48 final size:48
Alignment explanation
Indices: 74723471--74723685 Score: 224
Period size: 46 Copynumber: 4.6 Consensus size: 48
74723461 AAGCTGACGC
* * *
74723471 CATGTCCCAGACAGGTTTTACACTAGCTTGTATATCTCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * ** * *
74723519 CATGTCCTAGACATGTCTTACACTAG-TTCT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* **
74723565 CATGTCCCAGGCATGTCTTACACCGGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * * * *
74723613 CATGTCCCAGACATGTCTTACATTGGCTCT-CATA-AT-GTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTCGAGGCCGATG
*
74723659 CATGTTCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
74723686 ACACATATCA
Statistics
Matches: 137, Mismatches: 27, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
46 66 0.48
47 7 0.05
48 63 0.46
49 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
Found at i:74723656 original size:94 final size:94
Alignment explanation
Indices: 74723471--74723681 Score: 268
Period size: 94 Copynumber: 2.2 Consensus size: 94
74723461 AAGCTGACGC
* * * *
74723471 CATGTCCCAGACAGGTTTTACACTAGCTTGTATATCTCGAGGCCAATGCATGTCCTAGACATGTC
1 CATGTCCCAGACATGTCTTACACCAGCTTGTATATCTCGAGGCCAATGCATGTCCCAGACATGTC
*
74723536 TTACACTAGTTCTCGTCTCAATGCCGATG
66 TTACACTAGTGCTCGTCTCAATGCCGATG
* * *
74723565 CATGTCCCAGGCATGTCTTACACCGGCTTGTATATCTCGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACCAGCTTGTATATCTCGAGGCCAATGCATGTCCCAGACATGTC
*
74723630 TTACA-TTG-GCTC-TCAT-AATGTGGCCGATG
66 TTACACTAGTGCTCGTC-TCAA--T-GCCGATG
*
74723659 CATGTTCCAGACATGTCTTACAC
1 CATGTCCCAGACATGTCTTACAC
74723682 TAGCACACAT
Statistics
Matches: 102, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
91 4 0.04
92 4 0.04
93 3 0.03
94 91 0.89
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACCAGCTTGTATATCTCGAGGCCAATGCATGTCCCAGACATGTC
TTACACTAGTGCTCGTCTCAATGCCGATG
Found at i:74724360 original size:20 final size:20
Alignment explanation
Indices: 74724335--74724373 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
74724325 ACAATTTCAA
74724335 TTATTTTAC-ACATTTACAAC
1 TTATTTTACAAC-TTTACAAC
74724355 TTATTTTACAACTTTACAA
1 TTATTTTACAACTTTACAA
74724374 AATGCCCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.46
Consensus pattern (20 bp):
TTATTTTACAACTTTACAAC
Found at i:74725152 original size:25 final size:25
Alignment explanation
Indices: 74725134--74725224 Score: 155
Period size: 25 Copynumber: 3.6 Consensus size: 25
74725124 AGCTGTGAAC
74725134 CGGTATGCTCTCACGAGCTATAAAT
1 CGGTATGCTCTCACGAGCTATAAAT
74725159 CGGTATGCTCTCACGAGCTATAAAT
1 CGGTATGCTCTCACGAGCTATAAAT
74725184 CGGTATGCTCTCACGAGCTATAAAT
1 CGGTATGCTCTCACGAGCTATAAAT
** *
74725209 TAGTATCCTCTCACGA
1 CGGTATGCTCTCACGA
74725225 CCTGTGGAGT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (25 bp):
CGGTATGCTCTCACGAGCTATAAAT
Found at i:74730091 original size:42 final size:43
Alignment explanation
Indices: 74729981--74730095 Score: 128
Period size: 43 Copynumber: 2.7 Consensus size: 43
74729971 AAAGGTCATA
* * *
74729981 CAATGCCAACGTCCCAAACGTGGTCTTACATGTAATCAAATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATAT
* * *
74730024 CAATGCC-ACTGTCCTAGATAG-GGTCTTACACGAAATCAAGTA-
1 CAATGCCAAC-GTCCCAGA-CGTGGTCTTACACGAAATCAAATAT
*
74730066 CGATGCCAACGTCCCAGACGTGGTCTTACA
1 CAATGCCAACGTCCCAGACGTGGTCTTACA
74730096 TGATAATACA
Statistics
Matches: 59, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
41 1 0.02
42 24 0.41
43 33 0.56
44 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATAT
Found at i:74733045 original size:16 final size:16
Alignment explanation
Indices: 74733024--74733054 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
74733014 TACCAAATCA
74733024 AATCCTTAATCATTAC
1 AATCCTTAATCATTAC
74733040 AATCCTTAATCATTA
1 AATCCTTAATCATTA
74733055 TGTACATGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (16 bp):
AATCCTTAATCATTAC
Found at i:74734520 original size:12 final size:12
Alignment explanation
Indices: 74734497--74734529 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
74734487 TTAATTAGTA
74734497 ATATGT-TATAT
1 ATATGTATATAT
74734508 ATATGTATATAT
1 ATATGTATATAT
*
74734520 ATATGAATAT
1 ATATGTATAT
74734530 GATCTATGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.48
Consensus pattern (12 bp):
ATATGTATATAT
Found at i:74740313 original size:49 final size:49
Alignment explanation
Indices: 74740241--74740414 Score: 237
Period size: 49 Copynumber: 3.5 Consensus size: 49
74740231 TGAGGTCACG
74740241 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCA
* * * *
74740290 TGTGTAGTACTAAGTGCAGGCTACT--ATGCATACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATG--TACCGGATAA-TT-GGTCGCA
* *
74740341 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CGGATAATTGGTCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCA
74740389 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
74740415 TGCGTACCAG
Statistics
Matches: 109, Mismatches: 10, Indels: 13
0.83 0.08 0.10
Matches are distributed among these distances:
47 3 0.03
48 29 0.27
49 36 0.33
50 8 0.07
51 31 0.28
53 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCA
Found at i:74740410 original size:99 final size:100
Alignment explanation
Indices: 74740236--74740427 Score: 341
Period size: 99 Copynumber: 1.9 Consensus size: 100
74740226 TATTGTGAGG
74740236 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGTACT
*
74740301 AAGTGCAGGCTACTATGCATACCCGATAACTTCGA
66 AAGTGCAGGCTACTATGCATACCAGATAACTTCGA
* *
74740336 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CGGATAATTGGTCGTATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGTACT
*
74740400 AAGTGCAGGCTACTATGCGTACCAGATA
66 AAGTGCAGGCTACTATGCATACCAGATA
74740428 GCTTTGGCTA
Statistics
Matches: 88, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
99 52 0.59
100 36 0.41
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCATACCAGATAACTTCGA
Found at i:74743335 original size:44 final size:43
Alignment explanation
Indices: 74743252--74743391 Score: 165
Period size: 42 Copynumber: 3.3 Consensus size: 43
74743242 ATAGGATTCT
* * **
74743252 GATATGTGATTTTGTGTAAGACCACGTCTGGAATGTTGGCATC
1 GATATGTGATTTTGTGTAAGACCATGTCTGGGACATTGGCATC
* *
74743295 GATTTGTGATTTATGTGTAAGACCATGTCTGGGACATTGGCATT
1 GATATGTGATTT-TGTGTAAGACCATGTCTGGGACATTGGCATC
* * * * *
74743339 G-TATATGAGTTCGTGTAAGACCCTGTCTGGGACAGTGGCATC
1 GATATGTGATTTTGTGTAAGACCATGTCTGGGACATTGGCATC
74743381 GATATGTGATT
1 GATATGTGATT
74743392 ACATGTAAGA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 28 0.35
43 25 0.31
44 27 0.34
ACGTcount: A:0.23, C:0.14, G:0.29, T:0.35
Consensus pattern (43 bp):
GATATGTGATTTTGTGTAAGACCATGTCTGGGACATTGGCATC
Found at i:74759920 original size:10 final size:10
Alignment explanation
Indices: 74759896--74759926 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
74759886 AAGGCCGTAA
74759896 TGACCGAAGAG
1 TGACCGAA-AG
74759907 TGACCGAAAG
1 TGACCGAAAG
74759917 TGACCGAAAG
1 TGACCGAAAG
74759927 GTCGACACTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 12 0.60
11 8 0.40
ACGTcount: A:0.39, C:0.19, G:0.32, T:0.10
Consensus pattern (10 bp):
TGACCGAAAG
Found at i:74760563 original size:27 final size:26
Alignment explanation
Indices: 74760519--74760570 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
74760509 CTCGCTACAA
*
74760519 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
74760546 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
74760571 GTAGCCTCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:74767302 original size:48 final size:48
Alignment explanation
Indices: 74767127--74767320 Score: 246
Period size: 48 Copynumber: 4.0 Consensus size: 48
74767117 GCCGAAGCTA
* * *
74767127 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT-AG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC--TCAG
* * *
74767176 TCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTCA--G
** * *
74767226 TCTAATACACGTAGCAGCCTGCACTTAGTACTACACATGCGACCTCAG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTCAG
*
74767274 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTCA
74767321 CCATAGATCA
Statistics
Matches: 124, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
47 1 0.01
48 43 0.35
49 39 0.31
50 41 0.33
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (48 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTCAG
Found at i:74767312 original size:98 final size:98
Alignment explanation
Indices: 74767142--74767324 Score: 332
Period size: 98 Copynumber: 1.9 Consensus size: 98
74767132 TACGCATAGT
*
74767142 AGCCTGCACTTAGTACTACACATGCGACCAATAGTCTGGTACATGTAGTAGCCTGCACTTAGTAC
1 AGCCTGCACTTAGTACTACACATGCGACC-ATAGTCTGGTACACGTAGTAGCCTGCACTTAGTAC
74767207 TACACACGTGACCTCACCATCTAATACACGTAGC
65 TACACACGTGACCTCACCATCTAATACACGTAGC
74767241 AGCCTGCACTTAGTACTACACATGCGACC-TCAGTCTGGTACACGTAGTAGCCTGCACTTAGTAC
1 AGCCTGCACTTAGTACTACACATGCGACCAT-AGTCTGGTACACGTAGTAGCCTGCACTTAGTAC
74767305 TACACACGTGACCTCACCAT
65 TACACACGTGACCTCACCAT
74767325 AGATCATTCG
Statistics
Matches: 82, Mismatches: 1, Indels: 3
0.95 0.01 0.03
Matches are distributed among these distances:
97 1 0.01
98 52 0.63
99 29 0.35
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (98 bp):
AGCCTGCACTTAGTACTACACATGCGACCATAGTCTGGTACACGTAGTAGCCTGCACTTAGTACT
ACACACGTGACCTCACCATCTAATACACGTAGC
Found at i:74778966 original size:9 final size:9
Alignment explanation
Indices: 74778948--74779020 Score: 61
Period size: 9 Copynumber: 8.6 Consensus size: 9
74778938 TTTATTTATG
74778948 TTAA-GTGT
1 TTAATGTGT
74778956 TTAATGTGT
1 TTAATGTGT
74778965 TT--TGTGT
1 TTAATGTGT
74778972 TTAATAAGTGT
1 TTAAT--GTGT
74778983 TTAAATGTGT
1 TT-AATGTGT
*
74778993 TTAATATG-
1 TTAATGTGT
74779001 TT--TGT-T
1 TTAATGTGT
74779007 TTAATGTGT
1 TTAATGTGT
74779016 TTAAT
1 TTAAT
74779021 TGCAGGTGTC
Statistics
Matches: 53, Mismatches: 2, Indels: 19
0.72 0.03 0.26
Matches are distributed among these distances:
6 4 0.08
7 7 0.13
8 9 0.17
9 18 0.34
10 6 0.11
11 6 0.11
12 3 0.06
ACGTcount: A:0.25, C:0.00, G:0.19, T:0.56
Consensus pattern (9 bp):
TTAATGTGT
Found at i:74778993 original size:21 final size:22
Alignment explanation
Indices: 74778967--74779020 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
74778957 TAATGTGTTT
74778967 TGTGTTTAATAAG-TGTTTAAA
1 TGTGTTTAATAAGTTGTTTAAA
* *
74778988 TGTGTTTAATATGTTTGTTTTAA
1 TGTGTTTAATAAG-TTGTTTAAA
74779011 TGTGTTTAAT
1 TGTGTTTAAT
74779021 TGCAGGTGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 12 0.41
23 17 0.59
ACGTcount: A:0.26, C:0.00, G:0.19, T:0.56
Consensus pattern (22 bp):
TGTGTTTAATAAGTTGTTTAAA
Found at i:74779144 original size:24 final size:24
Alignment explanation
Indices: 74779097--74779146 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
74779087 TTCAAGTGAT
* **
74779097 TTTCGGTTACATACAAGGGGGACA
1 TTTCCGTTACATACAAGGAAGACA
74779121 TTTCCGTTACATACAAGGAAGACA
1 TTTCCGTTACATACAAGGAAGACA
74779145 TT
1 TT
74779147 ATACATCATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (24 bp):
TTTCCGTTACATACAAGGAAGACA
Found at i:74789822 original size:18 final size:18
Alignment explanation
Indices: 74789799--74789834 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
74789789 CGACCTAAAT
74789799 CCAATTCATAACATATGC
1 CCAATTCATAACATATGC
74789817 CCAATTCATAACATATGC
1 CCAATTCATAACATATGC
74789835 TCAAGAGGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.28, G:0.06, T:0.28
Consensus pattern (18 bp):
CCAATTCATAACATATGC
Found at i:74806539 original size:17 final size:17
Alignment explanation
Indices: 74806517--74806574 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
74806507 ACTGAAACAG
74806517 AAATAAAAATAAAAGAA
1 AAATAAAAATAAAAGAA
* *
74806534 AAATAAAAACAAAAGGA
1 AAATAAAAATAAAAGAA
**
74806551 AAAGCAAAAT-AAAGTAA
1 AAATAAAAATAAAAG-AA
74806568 AAATAAA
1 AAATAAA
74806575 TGGACTCAAA
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
16 4 0.12
17 28 0.88
ACGTcount: A:0.78, C:0.03, G:0.09, T:0.10
Consensus pattern (17 bp):
AAATAAAAATAAAAGAA
Found at i:74819065 original size:46 final size:46
Alignment explanation
Indices: 74818998--74819087 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
74818988 CCAGATTCCC
74818998 TCTATGAGGAAAAAATTAAAACAATTTTTTCCTAGAGTTTAAACCA
1 TCTATGAGGAAAAAATTAAAACAATTTTTTCCTAGAGTTTAAACCA
*
74819044 TCTATGAGGCAAAAATTAAAACAATTTTTTCCTAGAGTTTAAAC
1 TCTATGAGGAAAAAATTAAAACAATTTTTTCCTAGAGTTTAAAC
74819088 AACAAAACAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.33
Consensus pattern (46 bp):
TCTATGAGGAAAAAATTAAAACAATTTTTTCCTAGAGTTTAAACCA
Found at i:74820406 original size:20 final size:20
Alignment explanation
Indices: 74820381--74820421 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
74820371 TTGACTACAC
74820381 TATTAATGATATTACTTAAA
1 TATTAATGATATTACTTAAA
74820401 TATTAATGATATTACTTAAA
1 TATTAATGATATTACTTAAA
74820421 T
1 T
74820422 GAATAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (20 bp):
TATTAATGATATTACTTAAA
Found at i:74825055 original size:9 final size:9
Alignment explanation
Indices: 74825041--74825069 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
74825031 GAATAGCATG
74825041 ATCAATAAA
1 ATCAATAAA
74825050 ATCAATAAA
1 ATCAATAAA
74825059 ATCAATAAA
1 ATCAATAAA
74825068 AT
1 AT
74825070 AACAGGAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.66, C:0.10, G:0.00, T:0.24
Consensus pattern (9 bp):
ATCAATAAA
Found at i:74829140 original size:44 final size:43
Alignment explanation
Indices: 74829091--74829203 Score: 113
Period size: 43 Copynumber: 2.6 Consensus size: 43
74829081 TTTGACATGT
74829091 AATCAAATCTCGATGCCACTGTCCCAAACAGGGTCTTACACG-AA
1 AATCAAAT-TCGATGCCA-TGTCCCAAACAGGGTCTTACACGTAA
* * * * *
74829135 AATCAAATACGATGTCGATGTCCTAGACATGGTCTTACACGTAA
1 AATCAAATTCGATG-CCATGTCCCAAACAGGGTCTTACACGTAA
*
74829179 ATCTCAAA-TCGATGCCAATGTCCCA
1 A-ATCAAATTCGATGCC-ATGTCCCA
74829204 GACGTGATTT
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
43 26 0.46
44 25 0.45
45 5 0.09
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.24
Consensus pattern (43 bp):
AATCAAATTCGATGCCATGTCCCAAACAGGGTCTTACACGTAA
Found at i:74836576 original size:50 final size:50
Alignment explanation
Indices: 74836459--74837389 Score: 1747
Period size: 50 Copynumber: 18.8 Consensus size: 50
74836449 CAAGATAAAT
* *
74836459 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
74836507 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
74836557 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
74836607 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
74836657 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
74836707 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
74836757 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
74836807 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
74836857 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
74836907 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
74836957 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
74837007 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
74837055 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
*
74837105 ATATGTATATGTGGTAAAGTCGAATGGCTAGTGTG-AA-ATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
74837153 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
*
74837203 ATATGTATATGTGGTAAAGTCGAATGGCTAGTGTG-AA-ATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
74837251 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
*
74837301 ATATGTATATGTGGTAAAGTCGAATGGCTAGTGTG-AA-ATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
74837349 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
74837390 GTAGGAGATG
Statistics
Matches: 865, Mismatches: 8, Indels: 18
0.97 0.01 0.02
Matches are distributed among these distances:
48 215 0.25
49 18 0.02
50 632 0.73
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (50 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
Found at i:74837647 original size:37 final size:37
Alignment explanation
Indices: 74837542--74837647 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
74837532 AATATATTCT
*
74837542 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
*
74837579 GAGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
* *
74837616 GGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 GGGTAAGACCCGATGACTACGTGTGGAGATTT
74837648 CATCTGAGTT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
Found at i:74855230 original size:46 final size:46
Alignment explanation
Indices: 74855158--74855254 Score: 167
Period size: 46 Copynumber: 2.1 Consensus size: 46
74855148 TTAGCCATAT
* *
74855158 TTATGAAAGTAGGAATGCTTATAAGCTATGTGCATAAAAGCTGTTA
1 TTATGAAAGTAGGAATACTTATAAGCTATGTGCATAAAAGCTATTA
*
74855204 TTATTAAAGTAGGAATACTTATAAGCTATGTGCATAAAAGCTATTA
1 TTATGAAAGTAGGAATACTTATAAGCTATGTGCATAAAAGCTATTA
74855250 TTATG
1 TTATG
74855255 TGGTTATCCA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (46 bp):
TTATGAAAGTAGGAATACTTATAAGCTATGTGCATAAAAGCTATTA
Found at i:74855450 original size:17 final size:16
Alignment explanation
Indices: 74855428--74855459 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
74855418 TTTTAGATAA
74855428 TTGGAAGCTTGATCAGT
1 TTGGAAGCTTG-TCAGT
74855445 TTGGAAGCTTGTCAG
1 TTGGAAGCTTGTCAG
74855460 AGATCCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.22, C:0.12, G:0.31, T:0.34
Consensus pattern (16 bp):
TTGGAAGCTTGTCAGT
Found at i:74859602 original size:26 final size:25
Alignment explanation
Indices: 74859568--74859617 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
74859558 CAAAGTCCAT
74859568 TGTTACTCTTTCCCACTTCCATAGC
1 TGTTACTCTTTCCCACTTCCATAGC
* *
74859593 NTGTTTCTCTTTCCCATTTCCATAG
1 -TGTTACTCTTTCCCACTTCCATAG
74859618 TGGAATTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.14, C:0.32, G:0.08, T:0.44
Consensus pattern (25 bp):
TGTTACTCTTTCCCACTTCCATAGC
Found at i:74862499 original size:22 final size:22
Alignment explanation
Indices: 74862471--74862545 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
74862461 TTCCACATCC
74862471 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
74862493 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
74862517 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
74862540 ATCACA
1 ATCACA
74862546 CATACACATG
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 17 0.45
23 5 0.13
24 5 0.13
25 11 0.29
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:74862506 original size:47 final size:47
Alignment explanation
Indices: 74862464--74862666 Score: 363
Period size: 47 Copynumber: 4.3 Consensus size: 47
74862454 TATACACTTC
* * *
74862464 CACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA-TGTT
74862511 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
74862558 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
74862605 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
74862652 CACATTCATCACATT
1 CACATTCATCACATT
74862667 CACATTCATC
Statistics
Matches: 152, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
46 1 0.01
47 151 0.99
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.31
Consensus pattern (47 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
Found at i:74862639 original size:31 final size:31
Alignment explanation
Indices: 74862604--74862701 Score: 96
Period size: 31 Copynumber: 3.2 Consensus size: 31
74862594 ATACACATGT
74862604 TCACATTCATCACATTGGCCATTCGGCCTTA
1 TCACATTCATCACATTGGCCATTCGGCCTTA
* ** *
74862635 TCACA--CATACACA-TGTTCACATTCATCACAT-
1 TCACATTCAT-CACATTG-GC-CATTCGGC-CTTA
74862666 TCACATTCATCACATTGGCCATTCGGCCTTA
1 TCACATTCATCACATTGGCCATTCGGCCTTA
74862697 TCACA
1 TCACA
74862702 CATACACATG
Statistics
Matches: 51, Mismatches: 8, Indels: 16
0.68 0.11 0.21
Matches are distributed among these distances:
29 5 0.10
30 7 0.14
31 27 0.53
32 7 0.14
33 5 0.10
ACGTcount: A:0.28, C:0.33, G:0.09, T:0.31
Consensus pattern (31 bp):
TCACATTCATCACATTGGCCATTCGGCCTTA
Found at i:74862670 original size:15 final size:15
Alignment explanation
Indices: 74862650--74862681 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
74862640 CATACACATG
74862650 TTCACATTCATCACA
1 TTCACATTCATCACA
74862665 TTCACATTCATCACA
1 TTCACATTCATCACA
74862680 TT
1 TT
74862682 GGCCATTCGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.38
Consensus pattern (15 bp):
TTCACATTCATCACA
Found at i:74862674 original size:62 final size:62
Alignment explanation
Indices: 74862603--74862728 Score: 252
Period size: 62 Copynumber: 2.0 Consensus size: 62
74862593 CATACACATG
74862603 TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
1 TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
74862665 TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
1 TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
74862727 TT
1 TT
74862729 GGCCACTCGG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.32
Consensus pattern (62 bp):
TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
Found at i:74862720 original size:31 final size:31
Alignment explanation
Indices: 74862623--74862720 Score: 96
Period size: 31 Copynumber: 3.2 Consensus size: 31
74862613 TCACATTGGC
74862623 CATTCGGCCTTATCACACATACACATGTTCA
1 CATTCGGCCTTATCACACATACACATGTTCA
** * *
74862654 CATTCATCACAT-TCACATTCAT-CACAT-TGGC-
1 CATTCGGC-CTTATCACA--CATACACATGT-TCA
74862685 CATTCGGCCTTATCACACATACACATGTTCA
1 CATTCGGCCTTATCACACATACACATGTTCA
74862716 CATTC
1 CATTC
74862721 ATCACATTGG
Statistics
Matches: 51, Mismatches: 8, Indels: 16
0.68 0.11 0.21
Matches are distributed among these distances:
29 3 0.06
30 8 0.16
31 29 0.57
32 8 0.16
33 3 0.06
ACGTcount: A:0.29, C:0.33, G:0.08, T:0.31
Consensus pattern (31 bp):
CATTCGGCCTTATCACACATACACATGTTCA
Found at i:74869532 original size:36 final size:36
Alignment explanation
Indices: 74869485--74869557 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
74869475 AGTAATTTTT
74869485 AGCCATTTTATGCAATTTGGTTCCACCATCTAACTA
1 AGCCATTTTATGCAATTTGGTTCCACCATCTAACTA
*
74869521 AGCCATTTTATGTAATTTGGTTCCACCATCTAACTA
1 AGCCATTTTATGCAATTTGGTTCCACCATCTAACTA
74869557 A
1 A
74869558 CATGCTACTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (36 bp):
AGCCATTTTATGCAATTTGGTTCCACCATCTAACTA
Found at i:74877531 original size:94 final size:91
Alignment explanation
Indices: 74877366--74877636 Score: 305
Period size: 94 Copynumber: 2.9 Consensus size: 91
74877356 TTATTTGTGT
* *
74877366 GCTAGTGTAAGACATGTCTGGGACAGGCATCGGCCAC-ATTATGAGAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-CGA-TATGTGAGCCAGTGTAAGACCATGT
* *
74877430 CTAGGACATGGCATCGGC-ATTGAGACGAGA
64 CTGGGACATGGCATCGACTA-TGAGA--AGA
*
74877460 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-CGATATGTGAGCCAGTGTAAGACCATGTC
* *
74877525 TGGGACATGGCATCGACTATGAGATGT
65 TGGGACATGGCATCGACTATGAGAAGA
* * * *
74877552 GTTAGTGTAAGACCAAGTCTGGGACATGGCAT-GACACAGATATGTGAGAGCCAGTGTAAGACCA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CCGATATGT--GAGCCAGTGTAAGACCA
* *
74877616 TGTCTGGGACATTGCGTCGAC
61 TGTCTGGGACATGGCATCGAC
74877637 CTCGATTATA
Statistics
Matches: 155, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
92 12 0.08
93 21 0.14
94 84 0.54
95 38 0.25
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (91 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCGATATGTGAGCCAGTGTAAGACCATGTCT
GGGACATGGCATCGACTATGAGAAGA
Found at i:74877656 original size:49 final size:50
Alignment explanation
Indices: 74877369--74877684 Score: 265
Period size: 46 Copynumber: 6.6 Consensus size: 50
74877359 TTTGTGTGCT
* * *
74877369 AGTGTAAGA-CATGTCTGGGACA-GGCATCGGCCAC-ATTATGA-GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATGAGCC
* * * * * *
74877415 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGA-GACGA-GAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATGAGCC
*
74877463 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA-GATG-TGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATGAGCC
* **
74877509 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CT--ATGA-GATGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATGAGCC
* *
74877555 AGTGTAAGACCAAGTCTGGGACATGGCAT-GACAC-AGAT-ATG-TGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-CTCGATGATGAT--GAGCC
* * * * *
74877604 AGTGTAAGACCATGTCTGGGACATTGCGTCGACCTCGATTATAAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATGAGCC
* * *
74877653 AGTGTAAGATCATGTCTAGGACATGACATCGA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA
74877685 GATCATGTTT
Statistics
Matches: 220, Mismatches: 31, Indels: 35
0.77 0.11 0.12
Matches are distributed among these distances:
45 4 0.02
46 69 0.31
47 44 0.20
48 34 0.15
49 60 0.27
50 6 0.03
51 2 0.01
52 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATGAGCC
Found at i:74877699 original size:25 final size:25
Alignment explanation
Indices: 74877659--74877709 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
74877649 AGTCAGTGTA
74877659 AGATCATGTCTAGGACATGACATCG
1 AGATCATGTCTAGGACATGACATCG
* *
74877684 AGATCATGTTTGGGACATGACATCG
1 AGATCATGTCTAGGACATGACATCG
74877709 A
1 A
74877710 CTTAATGGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (25 bp):
AGATCATGTCTAGGACATGACATCG
Found at i:74879517 original size:262 final size:262
Alignment explanation
Indices: 74879043--74879576 Score: 971
Period size: 262 Copynumber: 2.0 Consensus size: 262
74879033 TGGCCAAGAG
*
74879043 GTGTGTCT-TATTTTGATTATGGTTTGTGAACCTATCTATCTATGCTATGTTCTAATGCTTGTGA
1 GTGTGTCTCAATTTTGATTATGGTTTGTGAACCTATCTATCTATGCTATGTTCTAATGCTTGTGA
74879107 TAAGGTGGTGTGATTATGCTTGTTGGCCATATATTGTTGGCATTAATGTTATGAATGTGTCTTAA
66 TAAGGTGGTGTGATTATGCTTGTTGGCCATATATTGTTGGCATTAATGTTATGAATGTGTCTTAA
* * *
74879172 TATGAGATGCTAAATCATTAAAATGATGTCATGATATGTGTTCCTAGTATGTATAAAGATGTGAA
131 TATGAGATGATAAATCACTAAAATGATGTCATGATATGTGTTACTAGTATGTATAAAGATGTGAA
* *
74879237 GGATTAAGGGTAACATAAAGGCTTGGAAAATAGCCTAAGTGTTAACCACACAGGCAGAGACACGG
196 GGATTAAGGGTAACATAAAGGATTGGAAAATAGCCTAAGTGTTAACCACACAGGCAAAGACACGG
*
74879302 CT
261 CA
74879304 GTGTGTCTCAATTTTGATTATGGTTTGTGAACCTATCTATCTATGCTATGTTCTAATGCTTGTGA
1 GTGTGTCTCAATTTTGATTATGGTTTGTGAACCTATCTATCTATGCTATGTTCTAATGCTTGTGA
*
74879369 TAAGGTGGTGTGATTATGCTTGTTGGCCATATATTGTTGGCATTATTGTTATGAATGTGTCTTAA
66 TAAGGTGGTGTGATTATGCTTGTTGGCCATATATTGTTGGCATTAATGTTATGAATGTGTCTTAA
*
74879434 TATGAGATGATAAATCACTAAAATGATGTCATGATATGTGTTATTAGTATGTATAAAGATGTGAA
131 TATGAGATGATAAATCACTAAAATGATGTCATGATATGTGTTACTAGTATGTATAAAGATGTGAA
*
74879499 GGATTAAGGGTAACATAAAGGATTGGAAAATAGCCTAAGTGTTAACCACACGGGCAAAGACACGG
196 GGATTAAGGGTAACATAAAGGATTGGAAAATAGCCTAAGTGTTAACCACACAGGCAAAGACACGG
74879564 CA
261 CA
74879566 GTGTGTCTCAA
1 GTGTGTCTCAA
74879577 CTGTGTGGGG
Statistics
Matches: 262, Mismatches: 10, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
261 8 0.03
262 254 0.97
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (262 bp):
GTGTGTCTCAATTTTGATTATGGTTTGTGAACCTATCTATCTATGCTATGTTCTAATGCTTGTGA
TAAGGTGGTGTGATTATGCTTGTTGGCCATATATTGTTGGCATTAATGTTATGAATGTGTCTTAA
TATGAGATGATAAATCACTAAAATGATGTCATGATATGTGTTACTAGTATGTATAAAGATGTGAA
GGATTAAGGGTAACATAAAGGATTGGAAAATAGCCTAAGTGTTAACCACACAGGCAAAGACACGG
CA
Found at i:74886049 original size:40 final size:40
Alignment explanation
Indices: 74885994--74886135 Score: 207
Period size: 40 Copynumber: 3.6 Consensus size: 40
74885984 TATTCGAATG
74885994 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
74886034 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
** *
74886074 ATATCCGGGCTAACACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
* *
74886114 ATATCC-GACTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
74886136 TACTTGGGTT
Statistics
Matches: 93, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 13 0.14
40 77 0.83
41 3 0.03
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:74894200 original size:40 final size:40
Alignment explanation
Indices: 74894140--74894321 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
74894130 TATTCGAATG
*
74894140 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
74894180 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
74894220 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* ** *
74894260 ATATCCAGGCTAACACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
74894300 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
74894322 TACTTGGGTT
Statistics
Matches: 130, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 14 0.11
40 113 0.87
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:74896446 original size:56 final size:56
Alignment explanation
Indices: 74896378--74896489 Score: 163
Period size: 56 Copynumber: 2.0 Consensus size: 56
74896368 CTATGTTAGC
* *
74896378 AGGAATACCTCTTCTCATGCACTGATGGCAAACCTGTGAAAAA-TAAATACACTAAG
1 AGGAATACCTCTTCTCATGCACCGATGGAAAACCTGT-AAAAAGTAAATACACTAAG
* * *
74896434 AGGAATGCCTCTTCTTATGCACCGATGGAAAACTTGTAAAAAGTAAATACACTAAG
1 AGGAATACCTCTTCTCATGCACCGATGGAAAACCTGTAAAAAGTAAATACACTAAG
74896490 TTAAAAAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
55 5 0.10
56 45 0.90
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (56 bp):
AGGAATACCTCTTCTCATGCACCGATGGAAAACCTGTAAAAAGTAAATACACTAAG
Found at i:74897944 original size:23 final size:21
Alignment explanation
Indices: 74897917--74897958 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
74897907 AATGCAATAT
74897917 TAAAAATGCTAACTAAAATGTGC
1 TAAAAATGC-AAC-AAAATGTGC
74897940 TAAAAATGCAACAAAATGT
1 TAAAAATGCAACAAAATGT
74897959 ACTTAAGTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 3 0.16
23 9 0.47
ACGTcount: A:0.52, C:0.12, G:0.12, T:0.24
Consensus pattern (21 bp):
TAAAAATGCAACAAAATGTGC
Found at i:74898856 original size:46 final size:46
Alignment explanation
Indices: 74898789--74898889 Score: 157
Period size: 46 Copynumber: 2.2 Consensus size: 46
74898779 AAAATTATTG
* * *
74898789 TTGGGCCTTGAGGTAGTGTGAACCTATTACATCCATGGGTCAATAA
1 TTGGGCCTTGAGGTAGCGTGAACCCATTACATCCATGGGTCAAAAA
* *
74898835 TTGGGCTTTGAGGTAGCGTGAACCCATTGCATCCATGGGTCAAAAA
1 TTGGGCCTTGAGGTAGCGTGAACCCATTACATCCATGGGTCAAAAA
74898881 TTGGGCCTT
1 TTGGGCCTT
74898890 AAGACTCATA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
TTGGGCCTTGAGGTAGCGTGAACCCATTACATCCATGGGTCAAAAA
Found at i:74904274 original size:76 final size:76
Alignment explanation
Indices: 74904146--74904300 Score: 292
Period size: 76 Copynumber: 2.0 Consensus size: 76
74904136 TATCCCCCTC
* *
74904146 ATAAGTATTATGAATGCTCAATTTAGTGCGATACATCTCAGTGGGAGGACATGATGTTTCTATCT
1 ATAAGTATTATGAATGCTCAATTTAGTGCAATACATCTCAGTGGGAGAACATGATGTTTCTATCT
74904211 CATCTAACTCT
66 CATCTAACTCT
74904222 ATAAGTATTATGAATGCTCAATTTAGTGCAATACATCTCAGTGGGAGAACATGATGTTTCTATCT
1 ATAAGTATTATGAATGCTCAATTTAGTGCAATACATCTCAGTGGGAGAACATGATGTTTCTATCT
74904287 CATCTAACTCT
66 CATCTAACTCT
74904298 ATA
1 ATA
74904301 GATTTGAGGA
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 77 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (76 bp):
ATAAGTATTATGAATGCTCAATTTAGTGCAATACATCTCAGTGGGAGAACATGATGTTTCTATCT
CATCTAACTCT
Found at i:74905971 original size:65 final size:65
Alignment explanation
Indices: 74905864--74905995 Score: 255
Period size: 65 Copynumber: 2.0 Consensus size: 65
74905854 CAAGCTCCAT
74905864 AGTAAGTGATTCCAAGCCCCGTTTTTAATGATTTTTACGTTTTTGAGATCCCGGTAGCTCGATTA
1 AGTAAGTGATTCCAAGCCCCGTTTTTAATGATTTTTACGTTTTTGAGATCCCGGTAGCTCGATTA
*
74905929 AGTAAGTGATTCCAAGCCCCGTTTTTAATGATTTTTATGTTTTTGAGATCCCGGTAGCTCGATTA
1 AGTAAGTGATTCCAAGCCCCGTTTTTAATGATTTTTACGTTTTTGAGATCCCGGTAGCTCGATTA
74905994 AG
1 AG
74905996 CTTATGCTAA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.39
Consensus pattern (65 bp):
AGTAAGTGATTCCAAGCCCCGTTTTTAATGATTTTTACGTTTTTGAGATCCCGGTAGCTCGATTA
Found at i:74906808 original size:46 final size:46
Alignment explanation
Indices: 74906756--74907024 Score: 266
Period size: 46 Copynumber: 5.8 Consensus size: 46
74906746 TGGTTGAGCA
74906756 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
74906802 TTCGAACTCGTTGAGTTAAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
74906847 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
74906895 TTCGAACTCGTTGAGTTAAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
74906940 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
74906988 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74907025 GCGGGTTACA
Statistics
Matches: 181, Mismatches: 24, Indels: 36
0.75 0.10 0.15
Matches are distributed among these distances:
42 4 0.02
43 10 0.06
45 6 0.03
46 88 0.49
47 54 0.30
48 6 0.03
50 9 0.05
51 4 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:74906864 original size:47 final size:47
Alignment explanation
Indices: 74906804--74906970 Score: 209
Period size: 47 Copynumber: 3.6 Consensus size: 47
74906794 TGCGAATGTT
74906804 CGAACTCGTTGAGTTAAGTCCGAGTTCGTGAGATGTAACTAGGCATC
1 CGAACTCGTTGAGTTAAGTCCGAGTTCGTGAGATGTAACTAGGCATC
* * * * *
74906851 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TT
1 CGAACTCGTTGAGTTAAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
74906897 CGAACTCGTTGAGTTAAGTCCGAGTTCGTGAGATGTAACTAGGCATC
1 CGAACTCGTTGAGTTAAGTCCGAGTTCGTGAGATGTAACTAGGCATC
*
74906944 CGAACTCGTTGAGTTGAGTCCGAGTTC
1 CGAACTCGTTGAGTTAAGTCCGAGTTC
74906971 ACTTATGGAT
Statistics
Matches: 100, Mismatches: 11, Indels: 18
0.78 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 27 0.27
47 53 0.53
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.29
Consensus pattern (47 bp):
CGAACTCGTTGAGTTAAGTCCGAGTTCGTGAGATGTAACTAGGCATC
Found at i:74906912 original size:93 final size:93
Alignment explanation
Indices: 74906753--74907017 Score: 485
Period size: 93 Copynumber: 2.8 Consensus size: 93
74906743 GGATGGTTGA
74906753 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
74906818 TAAGTCCGAGTTCGTGAGATGTAACTAG
66 TAAGTCCGAGTTCGTGAGATGTAACTAG
74906846 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
74906911 TAAGTCCGAGTTCGTGAGATGTAACTAG
66 TAAGTCCGAGTTCGTGAGATGTAACTAG
* ** *
74906939 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
*
74907004 TGAGTCCGAGTTCG
66 TAAGTCCGAGTTCG
74907018 CTTATGGGCG
Statistics
Matches: 167, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 167 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
TAAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:74910121 original size:28 final size:28
Alignment explanation
Indices: 74910089--74910172 Score: 98
Period size: 29 Copynumber: 3.0 Consensus size: 28
74910079 CCTGTACCTA
*
74910089 GCCCATTAAGCCCAATCATATTCATATG
1 GCCCATTAGGCCCAATCATATTCATATG
*
74910117 GCCCATTAGGCCCAAATCACT-TTTATATG
1 GCCCATTAGGCCC-AATCA-TATTCATATG
* **
74910146 GCCCGTTAGGCCCAGCCATATTCATAT
1 GCCCATTAGGCCCAATCATATTCATAT
74910173 TCATGCTCAC
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
27 1 0.02
28 21 0.45
29 24 0.51
30 1 0.02
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (28 bp):
GCCCATTAGGCCCAATCATATTCATATG
Found at i:74910404 original size:16 final size:16
Alignment explanation
Indices: 74910383--74910417 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
74910373 GTAGCCAAAC
*
74910383 TTTTAGCTTTTTGGTA
1 TTTTAGCTTTTTAGTA
74910399 TTTTAGCTTTTTAGTA
1 TTTTAGCTTTTTAGTA
74910415 TTT
1 TTT
74910418 CGACTTTTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.14, C:0.06, G:0.14, T:0.66
Consensus pattern (16 bp):
TTTTAGCTTTTTAGTA
Found at i:74917888 original size:39 final size:40
Alignment explanation
Indices: 74917788--74917972 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
74917778 TCGAATGATG
* * *
74917788 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
74917827 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
74917868 TCCAGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
74917907 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
74917946 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
74917973 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:74917994 original size:79 final size:79
Alignment explanation
Indices: 74917841--74918005 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
74917831 GGACTAAGAT
* **
74917841 CCGAAGGCATTTGTGCGAGTTACTAATTCCAGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
74917906 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
74917920 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCAGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
74917983 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
74917999 CCGAAGG
1 CCGAAGG
74918006 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:74920170 original size:29 final size:28
Alignment explanation
Indices: 74920137--74920251 Score: 115
Period size: 29 Copynumber: 4.0 Consensus size: 28
74920127 TACTTGTATC
* *
74920137 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* * *
74920165 TGGGCCATTAGGCCTAAATCACCTGT-ATA
1 TGGCCCATTAGGCC-CAATCACAT-TCATA
* *
74920194 TGGCCCATTAGGCCCAAATCATATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
74920223 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
74920251 T
1 T
74920252 TCATGCTCAC
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
28 24 0.34
29 45 0.64
30 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:74922204 original size:46 final size:46
Alignment explanation
Indices: 74922154--74922323 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
74922144 TTGAGCATCT
*
74922154 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
* * * * *
74922200 GAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCC
* * *
74922247 TAACTCGTTGAGTTGAGTCCGAGTTCA-TCTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACT-TATGGATGCAAACGTCC
*
74922293 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
74922324 AGGGCGGGTT
Statistics
Matches: 100, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 55 0.55
47 29 0.29
48 2 0.02
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
Found at i:74927001 original size:29 final size:29
Alignment explanation
Indices: 74926910--74926994 Score: 161
Period size: 29 Copynumber: 2.9 Consensus size: 29
74926900 AGCATGTATG
74926910 AATGTGATTTGGGCCTAATGGGCCATACA
1 AATGTGATTTGGGCCTAATGGGCCATACA
74926939 AATGTGATTTGGGCCTAATGGGCCATACA
1 AATGTGATTTGGGCCTAATGGGCCATACA
*
74926968 AATGTGATTTGGGCCTAGTGGGCCATA
1 AATGTGATTTGGGCCTAATGGGCCATA
74926995 TGCATGTATG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 55 1.00
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.28
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATACA
Found at i:74929587 original size:28 final size:27
Alignment explanation
Indices: 74929545--74929606 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
74929535 TTTACACTTG
74929545 TTTTTTTCAACTTCAGAATTTTTTCGAAT
1 TTTTTTTCAACTTCAG-ATTTTTTCG-AT
* * *
74929574 TTTTTTTC-ATTTCAGTTTTTTTTGAT
1 TTTTTTTCAACTTCAGATTTTTTCGAT
74929600 TTTTTTT
1 TTTTTTT
74929607 ATATTTCGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 9 0.30
27 7 0.23
28 6 0.20
29 8 0.27
ACGTcount: A:0.16, C:0.10, G:0.06, T:0.68
Consensus pattern (27 bp):
TTTTTTTCAACTTCAGATTTTTTCGAT
Found at i:74932160 original size:79 final size:81
Alignment explanation
Indices: 74932058--74932241 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
74932048 GCTCCTCGTT
* *
74932058 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
74932120 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
**
74932138 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
74932202 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
74932218 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74932242 CATCATTCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 14 0.15
79 56 0.61
80 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:74932175 original size:39 final size:41
Alignment explanation
Indices: 74932058--74932241 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
74932048 GCTCCTCGTT
* *
74932058 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
74932098 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
74932138 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
74932177 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
74932218 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74932242 CATCATTCAA
Statistics
Matches: 128, Mismatches: 7, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
38 3 0.02
39 48 0.38
40 66 0.52
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:74940133 original size:79 final size:78
Alignment explanation
Indices: 74940031--74940253 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
74940021 GCTCCTCGTT
* *
74940031 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
74940096 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
74940111 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
74940174 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
74940189 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
74940252 GA
63 GA
74940254 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:74940148 original size:39 final size:40
Alignment explanation
Indices: 74940031--74940253 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
74940021 GCTCCTCGTT
* *
74940031 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
74940071 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
74940111 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
74940150 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
74940189 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
74940230 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74940254 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:74942108 original size:49 final size:52
Alignment explanation
Indices: 74941999--74942128 Score: 176
Period size: 49 Copynumber: 2.6 Consensus size: 52
74941989 ATGAACAAAT
* * *
74941999 GAGTTACTTAATGCATGACTTAATTTAATAATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACATAATTTAATAATGCAAACTTTAACTAACATGA
* *
74942051 GAGTTACATAATGCATGTCATAA-TT-ATGATGCAAAC-TTAACTAACATGA
1 GAGTTACATAATGCATGACATAATTTAATAATGCAAACTTTAACTAACATGA
* *
74942100 GAGTTACATAATGCATGACCTTATTTAAT
1 GAGTTACATAATGCATGACATAATTTAAT
74942129 CCAGAACACA
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
49 32 0.47
50 12 0.18
51 4 0.06
52 20 0.29
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (52 bp):
GAGTTACATAATGCATGACATAATTTAATAATGCAAACTTTAACTAACATGA
Found at i:74955760 original size:70 final size:70
Alignment explanation
Indices: 74955647--74955792 Score: 265
Period size: 70 Copynumber: 2.1 Consensus size: 70
74955637 AGGGTTTTTC
74955647 AAGCTTCCAAGCTCAATTGTAAGTCCGTTCTAGCCTCGTTTTTAATGATTTTTACATATTTGGAG
1 AAGCTTCCAAGCTCAATTGTAAGTCCGTTCTAGCCTCGTTTTTAATGATTTTTACATATTTGGAG
74955712 TCCCG
66 TCCCG
* *
74955717 AAGCTTCCAAGCTCAATTGTAAGTCCGTTCTAGCCTCGTTTTTAATGATTTTTACGTTTTTGGAG
1 AAGCTTCCAAGCTCAATTGTAAGTCCGTTCTAGCCTCGTTTTTAATGATTTTTACATATTTGGAG
74955782 TCCCG
66 TCCCG
74955787 ATAGCT
1 A-AGCT
74955793 CGATTTAGCT
Statistics
Matches: 73, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
70 69 0.95
71 4 0.05
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.39
Consensus pattern (70 bp):
AAGCTTCCAAGCTCAATTGTAAGTCCGTTCTAGCCTCGTTTTTAATGATTTTTACATATTTGGAG
TCCCG
Found at i:74959110 original size:15 final size:15
Alignment explanation
Indices: 74959090--74959158 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
74959080 ATATCTTGGG
74959090 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
74959105 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* * *
74959120 TTTTTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
74959135 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
74959150 TTTCTTTAT
1 TTTCTTTAT
74959159 TCGGTTTTCT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 43 1.00
ACGTcount: A:0.12, C:0.16, G:0.13, T:0.59
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:74959150 original size:30 final size:30
Alignment explanation
Indices: 74959081--74959168 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 30
74959071 CATAATATCA
* * * *
74959081 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
* *
74959111 TAT-TCTGGATTTTTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
74959141 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
74959169 TGTTATCTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
29 8 0.17
30 39 0.81
31 1 0.02
ACGTcount: A:0.10, C:0.16, G:0.16, T:0.58
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:74962327 original size:27 final size:27
Alignment explanation
Indices: 74962297--74962518 Score: 270
Period size: 27 Copynumber: 8.2 Consensus size: 27
74962287 NTAATTTTAC
74962297 AAATCGAGGGTAAAACGGTAATTCTGT
1 AAATCGAGGGTAAAACGGTAATTCTGT
**
74962324 AAATCGAGGGTAAAACAATAATTCTGT
1 AAATCGAGGGTAAAACGGTAATTCTGT
*
74962351 AAA-CTGAGGGTAAAACGATAATTCTGT
1 AAATC-GAGGGTAAAACGGTAATTCTGT
* ** *
74962378 AATTCGAGGGTAAAATAGTAATTCTTT
1 AAATCGAGGGTAAAACGGTAATTCTGT
74962405 AAA-CTGAGGGTAAAAACGGT-ATTCTGT
1 AAATC-GAGGGT-AAAACGGTAATTCTGT
* **
74962432 AAATCGAGGGTAAAACGGTAATTTTAA
1 AAATCGAGGGTAAAACGGTAATTCTGT
* *
74962459 AAATCGAGGGTAAAACGATAATTTTGT
1 AAATCGAGGGTAAAACGGTAATTCTGT
**
74962486 AAATTAAGGGTAAAACGGTAATTCTGT
1 AAATCGAGGGTAAAACGGTAATTCTGT
74962513 AAATCG
1 AAATCG
74962519 GGAGTACTTT
Statistics
Matches: 165, Mismatches: 24, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
26 10 0.06
27 147 0.89
28 8 0.05
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AAATCGAGGGTAAAACGGTAATTCTGT
Found at i:74964633 original size:85 final size:85
Alignment explanation
Indices: 74964534--74964720 Score: 320
Period size: 85 Copynumber: 2.2 Consensus size: 85
74964524 AACCAAAATG
* * *
74964534 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATTAGAATCAATATTAGTAACAGAATTAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAACCAATATTAGTAACAGAATCAGAAT
*
74964599 CAGAATCAAAATTACGTGAC
66 CAGAATCAAAATTACGTGAA
*
74964619 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAACCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAACCAATATTAGTAACAGAATCAGAAT
*
74964684 CAGAATCAGAATTACGTGAA
66 CAGAATCAAAATTACGTGAA
74964704 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
74964721 GTGAATGCAA
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 96 1.00
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAACCAATATTAGTAACAGAATCAGAAT
CAGAATCAAAATTACGTGAA
Found at i:74964715 original size:6 final size:6
Alignment explanation
Indices: 74964534--74964695 Score: 138
Period size: 6 Copynumber: 26.8 Consensus size: 6
74964524 AACCAAAATG
* *
74964534 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATT AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * * *
74964582 AGTAA-C AGAATT AGAATC AGAATC AAAATT ACGTGA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* * *
74964631 AGAATC AGTAA-C AGAATC AGAATC AGAACC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
74964679 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
74964696 TACGTGAAAG
Statistics
Matches: 125, Mismatches: 18, Indels: 26
0.74 0.11 0.15
Matches are distributed among these distances:
5 10 0.08
6 106 0.85
7 7 0.06
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:74964875 original size:27 final size:26
Alignment explanation
Indices: 74964838--74964924 Score: 102
Period size: 27 Copynumber: 3.3 Consensus size: 26
74964828 AGCATGGCTG
*
74964838 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
74964864 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
* * *
74964891 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TCGTGACAGAGCCA
74964918 CCAGAAC
1 CCAGAAC
74964925 GCTTCCTCCG
Statistics
Matches: 55, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
26 12 0.22
27 43 0.78
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:74965153 original size:27 final size:27
Alignment explanation
Indices: 74965123--74965318 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
74965113 GGGGCAAAAT
* * * *
74965123 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
74965150 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
74965177 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
74965204 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
74965231 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
74965258 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
74965285 GGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
74965312 AGTAATT
1 GGTAATT
74965319 TCACAATCAA
Statistics
Matches: 143, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 143 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:74965189 original size:54 final size:54
Alignment explanation
Indices: 74965123--74965318 Score: 266
Period size: 54 Copynumber: 3.6 Consensus size: 54
74965113 GGGGCAAAAT
* * * *
74965123 GGTAATTTTACCCCACAAAGGTATCTCGGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
* * * *
74965177 GGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
* * *
74965231 GGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
* * *
74965285 GGAAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATT
74965319 TCACAATCAA
Statistics
Matches: 123, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 123 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
Found at i:74965317 original size:81 final size:81
Alignment explanation
Indices: 74965142--74965318 Score: 257
Period size: 81 Copynumber: 2.2 Consensus size: 81
74965132 ACCCCACAAA
* * * *
74965142 GGTATCTCGGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGAT
1 GGTATTTCGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAT
74965207 AATTCTACCCTACAGG
66 AATTCTACCCTACAGG
* * * *
74965223 GGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGA
1 GGTATTTCGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC-GA
74965288 -AATTCTACCCTACAGG
65 TAATTCTACCCTACAGG
*
74965304 GGTATTTCAGTAATT
1 GGTATTTCGGTAATT
74965319 TCACAATCAA
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 83 0.98
82 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.37
Consensus pattern (81 bp):
GGTATTTCGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAT
AATTCTACCCTACAGG
Found at i:74965353 original size:27 final size:27
Alignment explanation
Indices: 74965323--74965653 Score: 366
Period size: 27 Copynumber: 12.3 Consensus size: 27
74965313 GTAATTTCAC
* * *
74965323 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
74965350 AATCGAGGAG-AAAACGATAATTTTGTA
1 AATCGAGG-GTAAAACGGTAATTCTGTA
* * *
74965377 AA-CTAAGGGT-AAACTAGTAATTTTGTA
1 AATC-GAGGGTAAAAC-GGTAATTCTGTA
* * **
74965404 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
74965431 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
74965458 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
74965485 AA-CTGAGGGTAAAACGGAAATTTTAAA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
74965512 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
74965539 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
74965566 AA-CTGAGGGTAAAACGGAAATTTTAAA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
74965593 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
74965620 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
74965647 AATCGAG
1 AATCGAG
74965654 AGTACTTTGG
Statistics
Matches: 255, Mismatches: 39, Indels: 20
0.81 0.12 0.06
Matches are distributed among these distances:
26 8 0.03
27 239 0.94
28 8 0.03
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:74965695 original size:81 final size:81
Alignment explanation
Indices: 74965328--74965648 Score: 468
Period size: 81 Copynumber: 4.0 Consensus size: 81
74965318 TTCACAATCA
* * * * * * * *
74965328 AGGGTAAAATGGTAATTCTATAAATCGAGGAG-AAAACGATAATTTTGTAAA-CTAAGGGTAAAC
1 AGGGTAAAACGGAAATTTTAAAAATCGAGG-GTAAAACGGTAATTCTGTAAATC-GAGGGTAAAA
* *
74965391 TAGTAATTTTGTAAA-TCA
64 TAGTAATTCTGTAAACT-G
* *
74965409 AGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATA
1 AGGGTAAAACGGAAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATA
74965474 GTAATTCTGTAAACTG
66 GTAATTCTGTAAACTG
74965490 AGGGTAAAACGGAAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATA
1 AGGGTAAAACGGAAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATA
74965555 GTAATTCTGTAAACTG
66 GTAATTCTGTAAACTG
**
74965571 AGGGTAAAACGGAAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
1 AGGGTAAAACGGAAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATA
74965636 GTAATTCTGTAAA
66 GTAATTCTGTAAA
74965649 TCGAGAGTAC
Statistics
Matches: 224, Mismatches: 13, Indels: 6
0.92 0.05 0.02
Matches are distributed among these distances:
80 1 0.00
81 221 0.99
82 2 0.01
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.27
Consensus pattern (81 bp):
AGGGTAAAACGGAAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATA
GTAATTCTGTAAACTG
Found at i:74968142 original size:27 final size:26
Alignment explanation
Indices: 74968086--74968142 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
74968076 CAACCTTAAC
* *
74968086 CCTAGAGGTATATCAGTAATTTTACT
1 CCTAGAGGTAAATCAGTAATTTTACA
* * *
74968112 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGAGGTAAATCAGT-AATTTTACA
74968139 CCTA
1 CCTA
74968143 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (26 bp):
CCTAGAGGTAAATCAGTAATTTTACA
Found at i:74977152 original size:46 final size:46
Alignment explanation
Indices: 74977102--74977334 Score: 259
Period size: 52 Copynumber: 4.8 Consensus size: 46
74977092 TGTTTGGGCA
* ** *
74977102 TCCGAACTCGTTGAGCTGAGTTTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
74977148 TCCGAACTCGTTGAGTTGAGTCCGAGTTCTAGAGATGTAATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC---A-CT-T-ATGGATGCGAACG
* * *
74977200 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
74977246 TCCGAACTCGTTGAGTTGAGTCCGAGTTCTAGAGATGTAATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC---A-CT-T-ATGGATGCGAACG
* *
74977298 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74977335 GCGGGTTGCA
Statistics
Matches: 159, Mismatches: 16, Indels: 24
0.80 0.08 0.12
Matches are distributed among these distances:
46 69 0.43
47 2 0.01
48 2 0.01
49 4 0.03
50 2 0.01
51 2 0.01
52 78 0.49
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:74977191 original size:52 final size:52
Alignment explanation
Indices: 74977135--74977326 Score: 279
Period size: 52 Copynumber: 3.8 Consensus size: 52
74977125 GAGTTCACTT
* *
74977135 ATGGATGCGAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCTAGAGATGTA
1 ATGGATGCGAACGCCCGAACTCGTTGAGTTGAGTCCGAGTTCTAGAGATGTA
* *
74977187 ATGGATGCGAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTC---A-CT-T-
1 ATGGATGCGAACGCCCGAACTCGTTGAGTTGAGTCCGAGTTCTAGAGATGTA
* *
74977233 ATGGATGCGAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCTAGAGATGTA
1 ATGGATGCGAACGCCCGAACTCGTTGAGTTGAGTCCGAGTTCTAGAGATGTA
*
74977285 ATGGATGCGAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 ATGGATGCGAACGCCCGAACTCGTTGAGTTGAGTCCGAGTTC
74977327 ACTTATGGGC
Statistics
Matches: 123, Mismatches: 11, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
46 39 0.32
47 1 0.01
48 1 0.01
49 2 0.02
50 1 0.01
51 1 0.01
52 78 0.63
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (52 bp):
ATGGATGCGAACGCCCGAACTCGTTGAGTTGAGTCCGAGTTCTAGAGATGTA
Found at i:74977277 original size:98 final size:98
Alignment explanation
Indices: 74977103--74977334 Score: 428
Period size: 98 Copynumber: 2.4 Consensus size: 98
74977093 GTTTGGGCAT
* * **
74977103 CCGAACTCGTTGAGCTGAGTTTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTGAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTGAG
74977168 TCCGAGTTCTAGAGATGTAATGGATGCGAACGC
66 TCCGAGTTCTAGAGATGTAATGGATGCGAACGC
74977201 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTGAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTGAG
74977266 TCCGAGTTCTAGAGATGTAATGGATGCGAACGC
66 TCCGAGTTCTAGAGATGTAATGGATGCGAACGC
74977299 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74977335 GCGGGTTGCA
Statistics
Matches: 130, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 130 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.28
Consensus pattern (98 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTGAG
TCCGAGTTCTAGAGATGTAATGGATGCGAACGC
Found at i:74979173 original size:27 final size:26
Alignment explanation
Indices: 74979117--74979173 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
74979107 CAACCTTAAC
* *
74979117 CCTAGAGGTATATCAGTAATTTTACT
1 CCTAGAGGTAAATCAGTAATTTTACA
* * *
74979143 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGAGGTAAATCAGT-AATTTTACA
74979170 CCTA
1 CCTA
74979174 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (26 bp):
CCTAGAGGTAAATCAGTAATTTTACA
Found at i:74979486 original size:20 final size:21
Alignment explanation
Indices: 74979461--74979499 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
74979451 TGGGCCCGTA
*
74979461 AGCCTATTG-GGCCCAATTTT
1 AGCCTATCGAGGCCCAATTTT
74979481 AGCCTATCGAGGCCCAATT
1 AGCCTATCGAGGCCCAATT
74979500 ACCAAAGTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (21 bp):
AGCCTATCGAGGCCCAATTTT
Found at i:74981992 original size:39 final size:40
Alignment explanation
Indices: 74981789--74982011 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
74981779 TTGAATGCTG
* * * * * *
74981789 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
74981829 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
74981869 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
74981909 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
74981949 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
74981988 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
74982012 TGAACGAGGA
Statistics
Matches: 162, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
39 36 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:74982031 original size:79 final size:80
Alignment explanation
Indices: 74981864--74982046 Score: 235
Period size: 79 Copynumber: 2.3 Consensus size: 80
74981854 GTGCGAGATA
* *
74981864 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
** **
74981929 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
74981944 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
*
74982008 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
74982023 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
74982047 TACGTGATTT
Statistics
Matches: 88, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
78 14 0.16
79 47 0.53
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:74983742 original size:11 final size:10
Alignment explanation
Indices: 74983726--74983755 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
74983716 TTCGTAATGT
74983726 AAAAAAAAGTC
1 AAAAAAAA-TC
74983737 AAAAAAAATC
1 AAAAAAAATC
74983747 AAAAAAAAT
1 AAAAAAAAT
74983756 TTGAGTTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 11 0.58
11 8 0.42
ACGTcount: A:0.80, C:0.07, G:0.03, T:0.10
Consensus pattern (10 bp):
AAAAAAAATC
Found at i:74984966 original size:6 final size:6
Alignment explanation
Indices: 74984933--74985040 Score: 65
Period size: 6 Copynumber: 17.7 Consensus size: 6
74984923 AAAGAAATTG
* * * ** *
74984933 AAAG-A AAACAA AAAGAA AACGAA GAAGAA AAAGAA ATTGCA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
** ** * * *
74984980 AAAGAA ATCGAA AAAGTG AGAGAA AAAGAA AATGAAGA AAAGAA AATTGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAG-A-A AAAGAA AA-AGAA
74985031 AAAGAA AAAG
1 AAAGAA AAAG
74985041 CGAAAAAAGA
Statistics
Matches: 73, Mismatches: 26, Indels: 7
0.69 0.25 0.07
Matches are distributed among these distances:
5 3 0.04
6 59 0.81
7 7 0.10
8 4 0.05
ACGTcount: A:0.70, C:0.04, G:0.19, T:0.06
Consensus pattern (6 bp):
AAAGAA
Found at i:74984994 original size:18 final size:18
Alignment explanation
Indices: 74984937--74984995 Score: 73
Period size: 18 Copynumber: 3.3 Consensus size: 18
74984927 AAATTGAAAG
* *
74984937 AAAACAAAAAGAAAACGA
1 AAAAGAAAAAGAAATCGA
* * *
74984955 AGAAGAAAAAGAAATTGC
1 AAAAGAAAAAGAAATCGA
74984973 AAAAGAAAAAGAAATCGA
1 AAAAGAAAAAGAAATCGA
74984991 AAAAG
1 AAAAG
74984996 TGAGAGAAAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.71, C:0.07, G:0.17, T:0.05
Consensus pattern (18 bp):
AAAAGAAAAAGAAATCGA
Found at i:74985022 original size:14 final size:13
Alignment explanation
Indices: 74985001--74985038 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
74984991 AAAAGTGAGA
74985001 GAAAAAGAAAA-T
1 GAAAAAGAAAATT
74985013 GAAGAAAAGAAAATT
1 G-A-AAAAGAAAATT
74985028 GAAAAAGAAAA
1 GAAAAAGAAAA
74985039 AGCGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 10 0.43
14 10 0.43
15 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (13 bp):
GAAAAAGAAAATT
Found at i:74985052 original size:21 final size:21
Alignment explanation
Indices: 74985002--74985052 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
74984992 AAAGTGAGAG
*
74985002 AAAAAGAAAATGAAGAAAAGA
1 AAAAAGAAAAAGAAGAAAAGA
** *
74985023 AAATTGAAAAAGAA-AAAGCGA
1 AAAAAGAAAAAGAAGAAA-AGA
74985044 AAAAAGAAA
1 AAAAAGAAA
74985053 TTGAAAGAGA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.06
Consensus pattern (21 bp):
AAAAAGAAAAAGAAGAAAAGA
Found at i:74985056 original size:27 final size:27
Alignment explanation
Indices: 74984954--74985058 Score: 77
Period size: 27 Copynumber: 3.8 Consensus size: 27
74984944 AAAGAAAACG
* *
74984954 AAGAAGAAAAAGAAATTGCAAAAGAAA
1 AAGAAGAAAAAAAAATTGAAAAAGAAA
*** **
74984981 AAGAAATCGAAAAAGTGAGAGAAAAAGAAA
1 AAG-AA--GAAAAAAAAATTGAAAAAGAAA
* *
74985011 ATGAAGAAAAGAAAATTGAAAAAGAAA
1 AAGAAGAAAAAAAAATTGAAAAAGAAA
*
74985038 AAG-CGAAAAAAGAAATTGAAA
1 AAGAAGAAAAAA-AAATTGAAA
74985059 GAGAGCTTGA
Statistics
Matches: 59, Mismatches: 15, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
26 6 0.10
27 30 0.51
28 2 0.03
29 2 0.03
30 19 0.32
ACGTcount: A:0.69, C:0.03, G:0.20, T:0.09
Consensus pattern (27 bp):
AAGAAGAAAAAAAAATTGAAAAAGAAA
Found at i:74985092 original size:33 final size:33
Alignment explanation
Indices: 74985055--74985117 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
74985045 AAAAGAAATT
74985055 GAAAGAGAG-CT-TGAAAAGAAATCAAGTGAAAAA
1 GAAAGAGAGTCTGT-AAAAGAAA-CAAGTGAAAAA
*
74985088 GAAAGAGAGTCTGTAAAAGAAACGAGTGAA
1 GAAAGAGAGTCTGTAAAAGAAACAAGTGAA
74985118 GTGAGTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.54, C:0.06, G:0.27, T:0.13
Consensus pattern (33 bp):
GAAAGAGAGTCTGTAAAAGAAACAAGTGAAAAA
Found at i:74986923 original size:20 final size:20
Alignment explanation
Indices: 74986900--74986945 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
74986890 CCAGCTCGAG
*
74986900 TTAGCTCACATGAGCTTAAT
1 TTAGCTCACATGAGCTCAAT
***
74986920 TTAGCTCGTTTGAGCTCAAT
1 TTAGCTCACATGAGCTCAAT
74986940 TTAGCT
1 TTAGCT
74986946 TACTTTAGCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (20 bp):
TTAGCTCACATGAGCTCAAT
Found at i:74986927 original size:30 final size:30
Alignment explanation
Indices: 74986892--74986965 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
74986882 AGTTTTTCCC
74986892 AGCTCGAGTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-GTTGAGCTCA-ATTGAGCTTAATTT
* * *
74986922 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGGTTGAGCTCAATTGAGCTTAATTT
*
74986952 AGCTCGTTTGAGCT
1 AGCTCGGTTGAGCT
74986966 TGGCTTAAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
29 3 0.08
30 36 0.92
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (30 bp):
AGCTCGGTTGAGCTCAATTGAGCTTAATTT
Found at i:74989885 original size:40 final size:40
Alignment explanation
Indices: 74989835--74990817 Score: 1756
Period size: 40 Copynumber: 24.6 Consensus size: 40
74989825 TTGAATGCTG
* * * * * *
74989835 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
** * * * *
74989875 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
74989915 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
74989955 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
74989995 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
74990035 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
74990075 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
74990115 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
74990155 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
74990195 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
74990235 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
74990275 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
74990315 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
74990355 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
74990395 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
74990435 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
74990475 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
74990515 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
74990555 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
74990595 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
74990635 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
74990675 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
74990715 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
74990755 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
74990794 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
74990818 TGAACGAGGA
Statistics
Matches: 921, Mismatches: 19, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
39 35 0.04
40 878 0.95
41 8 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:74992622 original size:47 final size:47
Alignment explanation
Indices: 74992453--74992658 Score: 252
Period size: 47 Copynumber: 4.4 Consensus size: 47
74992443 NNNNNNNNNN
**
74992453 TGTATATATGTGA-ATAGGACCTAATGGCCGATGTGATGAATGTGAGTG
1 TGTATATATGTGATA-AGG-CCTAATGGCCGATGTGATGAATGTGAAAG
* *
74992501 TATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
** *
74992548 TGTATATGCGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * * * *
74992595 TGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
74992642 TGCATAAATGTGATAAG
1 TGTATATATGTGATAAG
74992659 TCCCGAAGGG
Statistics
Matches: 137, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
47 121 0.88
48 15 0.11
49 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
Found at i:74992832 original size:37 final size:37
Alignment explanation
Indices: 74992776--74992854 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
74992766 TCGAGCTCTA
* * *
74992776 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
74992813 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
74992850 AAGAC
1 AAGAC
74992855 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:74995080 original size:29 final size:29
Alignment explanation
Indices: 74995047--74995120 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
74995037 GTTGTGAGAT
* *
74995047 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
74995076 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
74995105 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
74995121 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:74995458 original size:40 final size:40
Alignment explanation
Indices: 74995414--74995681 Score: 242
Period size: 40 Copynumber: 6.7 Consensus size: 40
74995404 CATTTGAATG
*
74995414 ATATCCGGGCTAAGTCCCGAAGGCAATT-GAGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGCTAGTGA-T
* * * *
74995454 ATATCCGGGCTAAGACCCGAAGGC-ATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGC-TAGTGAT
* *
74995494 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTGAT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGCTAG-TGAT
* * * *
74995534 ATATCCGGGCTAAGACCCGAAGGC-ATTGGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGCTAGTGA-T
* * * *
74995574 AAATCCGGGCTAAATTCCGAAGAGC-ATTCGTGCTAGTGAG
1 ATATCCGGGCTAAGTCCCGAAG-GCAATTCGTGCTAGTGAT
* * * * *
74995614 GTATCCGGACTAAGTTCCGAAGAGC-ATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAG-GCAATTCGTGCTAGTGAT
*
74995654 ATATCCGGGCTAGGTCCCGAAGAGCAAT
1 ATATCCGGGCTAAGTCCCGAAG-GCAAT
74995682 CATGCTGGTG
Statistics
Matches: 194, Mismatches: 26, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
39 10 0.05
40 162 0.84
41 22 0.11
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCAATTCGTGCTAGTGAT
Found at i:74995627 original size:120 final size:120
Alignment explanation
Indices: 74995414--74995681 Score: 276
Period size: 120 Copynumber: 2.2 Consensus size: 120
74995404 CATTTGAATG
* * *
74995414 ATATCCGGGCTAAGTCCCGAAGGCAATTGAGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCAATTGAGCGAGTGACTAAATCCGGGCTAAGACCCGAAGGCA
* * * * *
74995479 TTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG-GCAATT-GTGCAAGTTGAT
66 TTCGTGCGAAGTGAGATATCCGGACTAAGACCCGAAGAGC-ATTCGTGC-AGGTGAT
* * * *
74995534 ATATCCGGGCTAAGACCCGAAGGC-ATTGGTGCGAGTTACTAAATCCGGGCTAA-ATTCCGAAGA
1 ATATCCGGGCTAAGTCCCGAAGGCAATT-GAGCGAGTGACTAAATCCGGGCTAAGA-CCCGAAG-
* * ** * *
74995597 GCATTCGTGC-TAGTGAGGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTGGTGTT
63 GCATTCGTGCGAAGTGAGATATCCGGACTAAGACCCGAAGAGCATTCGTGCAGGTGAT
*
74995654 ATATCCGGGCTAGGTCCCGAAGAGCAAT
1 ATATCCGGGCTAAGTCCCGAAG-GCAAT
74995682 CATGCTGGTG
Statistics
Matches: 121, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
119 4 0.03
120 98 0.81
121 17 0.14
122 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAGTCCCGAAGGCAATTGAGCGAGTGACTAAATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAAGTGAGATATCCGGACTAAGACCCGAAGAGCATTCGTGCAGGTGAT
Found at i:74995688 original size:40 final size:40
Alignment explanation
Indices: 74995615--74995691 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
74995605 GCTAGTGAGG
* * *
74995615 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTGGTGTTA
1 TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTGTTA
* *
74995655 TATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTG
74995692 ACATGTATTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
TATCCGGACTAAGTCCCGAAGAGCAATCATGCTGGTGTTA
Found at i:74998936 original size:37 final size:37
Alignment explanation
Indices: 74998880--74998958 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
74998870 TCGAGCTCTA
* * *
74998880 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
74998917 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
74998954 AAGAC
1 AAGAC
74998959 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:75002494 original size:187 final size:187
Alignment explanation
Indices: 75002179--75002549 Score: 672
Period size: 187 Copynumber: 2.0 Consensus size: 187
75002169 TAATTTGGGA
* *
75002179 AAAGTATAGGGGCAAAATAAAAATTTTTGCCAAAATGTGTCATTGGACTAATTTGATTAGTATAT
1 AAAGTATAGGGGCAAAATAAAAATTTTTACCAAAATGTGTCATTGGACTAATTTGATTACTATAT
* *
75002244 TGTTTTAATAAGTTAAATGTGATGTTATAGATGATGAAAAATGAGATTCGGGCTTAGAACGAGGA
66 TGTTTTAATAAGTTAAATGTGATGTTATAGATGATGAAAAACGAGATTCGAGCTTAGAACGAGGA
75002309 AAAACGAGAAATTGATGTTTAGGCCTCTTTTACCAATTTGGTGTCGAGGTAAGTGGC
131 AAAACGAGAAATTGATGTTTAGGCCTCTTTTACCAATTTGGTGTCGAGGTAAGTGGC
*
75002366 AAAGTATAGGGGCAAAATCAGAAA-TTTTACCAAAATGTGTCATTGGACTAATTTGATTACTATA
1 AAAGTATAGGGGCAAAAT-AAAAATTTTTACCAAAATGTGTCATTGGACTAATTTGATTACTATA
75002430 TTGTTTTAATAAGTTAAATGTGATGTTATAGATGATGAAAAACGAGATTCGAGCTTAGAACGAGG
65 TTGTTTTAATAAGTTAAATGTGATGTTATAGATGATGAAAAACGAGATTCGAGCTTAGAACGAGG
*
75002495 AAAAATGAGAAATTGATGTTTAGGCCTCTTTTACCAATTTGGTGTCGAGGTAAGT
130 AAAAACGAGAAATTGATGTTTAGGCCTCTTTTACCAATTTGGTGTCGAGGTAAGT
75002550 TCGTATGATA
Statistics
Matches: 177, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
187 173 0.98
188 4 0.02
ACGTcount: A:0.36, C:0.09, G:0.23, T:0.33
Consensus pattern (187 bp):
AAAGTATAGGGGCAAAATAAAAATTTTTACCAAAATGTGTCATTGGACTAATTTGATTACTATAT
TGTTTTAATAAGTTAAATGTGATGTTATAGATGATGAAAAACGAGATTCGAGCTTAGAACGAGGA
AAAACGAGAAATTGATGTTTAGGCCTCTTTTACCAATTTGGTGTCGAGGTAAGTGGC
Found at i:75003965 original size:43 final size:44
Alignment explanation
Indices: 75003904--75004036 Score: 151
Period size: 51 Copynumber: 2.9 Consensus size: 44
75003894 TAAATCTGAA
* *
75003904 CTCGTTGAGTGGTTCGAGTTCATTATGGATGTG-AGCATCCGAG
1 CTCGTTGAGTGGTCCGAGTTCATTATGGATGTGTAACATCCGAG
75003947 CTCGTTGAGTGGTCCGAGTTCATGATGGATGCGATGCATGTAACATCCGAG
1 CTCGTTGAGTGGTCCGAGTTCAT--T--ATG-GATG--TGTAACATCCGAG
* * *
75003998 CTCGTTAAGTGGTCCGAGTTCGTTATGGATGTGTTACAT
1 CTCGTTGAGTGGTCCGAGTTCATTATGGATGTGTAACAT
75004037 GTTATGAGTT
Statistics
Matches: 77, Mismatches: 5, Indels: 15
0.79 0.05 0.15
Matches are distributed among these distances:
43 22 0.29
44 7 0.09
45 1 0.01
46 4 0.05
47 6 0.08
48 4 0.05
49 1 0.01
50 2 0.03
51 30 0.39
ACGTcount: A:0.20, C:0.17, G:0.31, T:0.32
Consensus pattern (44 bp):
CTCGTTGAGTGGTCCGAGTTCATTATGGATGTGTAACATCCGAG
Found at i:75008104 original size:34 final size:34
Alignment explanation
Indices: 75008066--75008133 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
75008056 ATAAGTTTAA
75008066 CATGGCATAATCCAACCACAACTTGGCCAAAGCC
1 CATGGCATAATCCAACCACAACTTGGCCAAAGCC
75008100 CATGGCATAATCCAACCACAACTTGGCCAAAGCC
1 CATGGCATAATCCAACCACAACTTGGCCAAAGCC
75008134 TAAGCATTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.35, G:0.15, T:0.15
Consensus pattern (34 bp):
CATGGCATAATCCAACCACAACTTGGCCAAAGCC
Found at i:75011803 original size:40 final size:40
Alignment explanation
Indices: 75011729--75011870 Score: 209
Period size: 40 Copynumber: 3.6 Consensus size: 40
75011719 AACCCAAGTA
* *
75011729 CCTTCGGGATTTAGC-CGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTC-ACTAGCACAAATG
*
75011768 CCTTCGGGTCTTAGCTCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTCACTAGCACAAATG
75011808 CCTTCGGGACTTAG-TCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCT-CGGATATAGTCACTAGCACAAATG
*
75011848 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCTCGGATAT
75011871 CATTCGAATA
Statistics
Matches: 94, Mismatches: 5, Indels: 7
0.89 0.05 0.07
Matches are distributed among these distances:
39 14 0.15
40 79 0.84
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCTCGGATATAGTCACTAGCACAAATG
Found at i:75022534 original size:26 final size:27
Alignment explanation
Indices: 75022505--75022599 Score: 88
Period size: 27 Copynumber: 3.4 Consensus size: 27
75022495 TCGGGTTTTT
75022505 TGTGT-TTCTGTGATTTTTAAAATTTG
1 TGTGTGTTCTGTGATTTTTAAAATTTG
* *
75022531 TGTGTGTTCTG-G-TTGGTTAAAATATATATT
1 TGTGTGTTCTGTGATT--TTTAAA-AT-T-TG
*
75022561 TCTGTGTTTCTGTGATTTTTAAAATTTG
1 TGTGTG-TTCTGTGATTTTTAAAATTTG
75022589 TGTGTGTTCTG
1 TGTGTGTTCTG
75022600 GTTGGTTAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 17
0.70 0.08 0.22
Matches are distributed among these distances:
25 2 0.04
26 6 0.11
27 15 0.28
28 8 0.15
29 2 0.04
30 8 0.15
31 10 0.19
32 1 0.02
33 2 0.04
ACGTcount: A:0.18, C:0.05, G:0.22, T:0.55
Consensus pattern (27 bp):
TGTGTGTTCTGTGATTTTTAAAATTTG
Found at i:75022595 original size:58 final size:58
Alignment explanation
Indices: 75022505--75022617 Score: 226
Period size: 58 Copynumber: 1.9 Consensus size: 58
75022495 TCGGGTTTTT
75022505 TGTGTTTCTGTGATTTTTAAAATTTGTGTGTGTTCTGGTTGGTTAAAATATATATTTC
1 TGTGTTTCTGTGATTTTTAAAATTTGTGTGTGTTCTGGTTGGTTAAAATATATATTTC
75022563 TGTGTTTCTGTGATTTTTAAAATTTGTGTGTGTTCTGGTTGGTTAAAATATATAT
1 TGTGTTTCTGTGATTTTTAAAATTTGTGTGTGTTCTGGTTGGTTAAAATATATAT
75022618 ATTTTAGTAG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.21, C:0.04, G:0.21, T:0.53
Consensus pattern (58 bp):
TGTGTTTCTGTGATTTTTAAAATTTGTGTGTGTTCTGGTTGGTTAAAATATATATTTC
Found at i:75022608 original size:26 final size:26
Alignment explanation
Indices: 75022521--75022611 Score: 85
Period size: 26 Copynumber: 3.3 Consensus size: 26
75022511 TCTGTGATTT
75022521 TTAAAATTTGTGTGTGTTCTGGTTGG
1 TTAAAATTTGTGTGTGTTCTGGTTGG
* * *
75022547 TTAAAATATATATTTCTGTGTTTCTGTGATT-T
1 TT-AAA-AT-T-TGTGTGTG-TTCTG-G-TTGG
75022579 TTAAAATTTGTGTGTGTTCTGGTTGG
1 TTAAAATTTGTGTGTGTTCTGGTTGG
75022605 TTAAAAT
1 TTAAAAT
75022612 ATATATATTT
Statistics
Matches: 51, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
25 2 0.04
26 10 0.20
27 8 0.16
28 8 0.16
29 2 0.04
30 8 0.16
31 8 0.16
32 3 0.06
33 2 0.04
ACGTcount: A:0.22, C:0.04, G:0.22, T:0.52
Consensus pattern (26 bp):
TTAAAATTTGTGTGTGTTCTGGTTGG
Found at i:75024094 original size:27 final size:26
Alignment explanation
Indices: 75024042--75024101 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
75024032 CCACATATAT
*
75024042 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
75024068 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
75024095 ATATCTG
1 ATATCTG
75024102 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:75024428 original size:29 final size:28
Alignment explanation
Indices: 75024386--75024442 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 28
75024376 TTTTCATCTC
*
75024386 AGCAGGAAATCCCCAACCATAGTGGGCT
1 AGCAGGAAATCCCCAACCATAATGGGCT
75024414 NAGCAGGAAATCCCCAACCATAATGGGCT
1 -AGCAGGAAATCCCCAACCATAATGGGCT
75024443 TGGAGCTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.33, C:0.28, G:0.23, T:0.14
Consensus pattern (28 bp):
AGCAGGAAATCCCCAACCATAATGGGCT
Found at i:75026563 original size:47 final size:47
Alignment explanation
Indices: 75026439--75026565 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 47
75026429 ATTGATAAGG
* * * * *
75026439 ACCTACACCATGGCTCATAGCCAAATCAAGCTAACTTATCCCGGAGT
1 ACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTCATCCCGGAAT
* * * * * *
75026486 ATCTATACCATGGCTTGTAACCAAATCAAGGTAACTCCTCTCTGAAT
1 ACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTCATCCCGGAAT
*
75026533 ACCTATACCATGGCCCGTAGCCAAATCAAGGTA
1 ACCTATACCATGGCTCGTAGCCAAATCAAGGTA
75026566 TTATTCACAC
Statistics
Matches: 65, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
47 65 1.00
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (47 bp):
ACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTCATCCCGGAAT
Found at i:75029792 original size:23 final size:24
Alignment explanation
Indices: 75029764--75029810 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
75029754 TTTCATCTTG
* * *
75029764 TGAATATATCAAAATATC-ATCTA
1 TGAATAAAACAAAAAATCGATCTA
75029787 TGAATAAAACAAAAAATCGATCTA
1 TGAATAAAACAAAAAATCGATCTA
75029811 GATATGGTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.53, C:0.13, G:0.06, T:0.28
Consensus pattern (24 bp):
TGAATAAAACAAAAAATCGATCTA
Found at i:75031463 original size:47 final size:48
Alignment explanation
Indices: 75031272--75031486 Score: 297
Period size: 48 Copynumber: 4.5 Consensus size: 48
75031262 GACATTGCTG
* * * *
75031272 TTATGTGAGCCACTGTAAGTCCATGTCTAGGACATGGCATCAGTATTA
1 TTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTA
* *
75031320 TTATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTG
1 TTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTA
*
75031368 TTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTA
1 TTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTA
* * * *
75031416 TTATGAGAGCCAGTGTAAGA-TATGTCTGGGACATGGCATCGGTATTA
1 TTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTA
* * *
75031463 TTATGAGAGCCAATGAAAGACCAT
1 TTATGTGAGCCAGTGTAAGACCAT
75031487 ATCTATGATA
Statistics
Matches: 151, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
47 43 0.28
48 108 0.72
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (48 bp):
TTATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTA
Done.